Citrus Sinensis ID: 028673

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFCWTRITADNTIILL
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEcccEEEEEEccccccccEEEccHHHHHHHHHHHcccccccccccccccEEEEEcccccHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEcccccccccccccccEEEEcccccccccHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEcccEEEEEEccccccccEEHHHHHHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHHHHcccEEEccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccccccccccccEEEEEcEEEccHHHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHEEEHccccEEcc
Coil and Loop (DISEMBL)
meadrlnspstsVINLEVLGhqlqfsqdpnskhlgttvWDASVVFVKYLEKncrkgrfcpsklkgkrVIELGAGCGVAGFGMALLGcnvittdqieVLPLLKRNvewntsrisqmnpgsdllgSIQAVeldwgnedhikavappfdyiigTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFCWtritadntiill
Flexible Loop (DISEMBL)
meadrlnspstSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKncrkgrfcpsklkgkrVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRisqmnpgsdLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFCWTRITADNTIILL
Low Complexity Region (SEG)
MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVmfslsmfsltffCWTRITADNTIILL
Disordered region (IsUnstruct)
*************INLEVLGHQLQF******KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFCWTRITADNTIIL*
Disordered Region (DISOPRED)
**********TSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFCWTRITADNTIILL
Disordered Region (DISEMBL)
**********TSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFCWTRITADNTIILL
Disordered Region (DISPRO)
*****L*SPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFCWTRITADNTII**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFCWTRITADNTIILL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q8C436	228	Protein-lysine methyltran	yes	no	0.697	0.627	0.384	4e-18
Q9H867	229	Protein-lysine methyltran	yes	no	0.702	0.628	0.371	4e-18
Q8WXB1	218	Protein-lysine methyltran	no	no	0.756	0.711	0.324	9e-15
A4IGU3	215	Protein-lysine methyltran	no	no	0.751	0.716	0.308	1e-14
A6NDL7	271	Putative methyltransferas	no	no	0.751	0.568	0.327	5e-14
Q58DC7	290	Protein-lysine methyltran	yes	no	0.702	0.496	0.335	2e-13
Q8CDZ2	244	Protein-lysine methyltran	no	no	0.702	0.590	0.341	2e-13
Q28IN4	224	Protein-lysine methyltran	no	no	0.619	0.566	0.342	3e-13
Q5BLD8	218	Protein-lysine methyltran	yes	no	0.526	0.495	0.410	4e-13
A4FV98	226	Protein-lysine methyltran	no	no	0.687	0.623	0.335	8e-13

>sp|Q8C436|MT21D_MOUSE Protein-lysine methyltransferase METTL21D OS=Mus musculus GN=Mettl21d PE=2 SV=2

 Score = 91.3 bits (225), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 13/156 (8%)

Query: 27  QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
           Q   S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct: 31  QQYGSGGVGCVVWDAAIVLSKYLETPGFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89

Query: 87  CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
            +VI TD  E+  LLK N++ N   ++         GS+QA  L WG +  I+ +  P D
Sbjct: 90  ADVIVTDLEELQDLLKMNIDMNKHLVT---------GSVQAKVLKWGED--IEDLMSP-D 137

Query: 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182
           YI+  D +Y E  LEPLL+T+  LSG +T I+  + 
Sbjct: 138 YILMADCIYYEESLEPLLKTLKDLSGSETCIICCYE 173

Probable methyltransferase.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9H867|MT21D_HUMAN Protein-lysine methyltransferase METTL21D OS=Homo sapiens GN=METTL21D PE=1 SV=2

 Score = 91.3 bits (225), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 83/156 (53%), Gaps = 12/156 (7%)

Query: 27  QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
           Q  +S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct: 31  QQYSSGGVGCVVWDAAIVLSKYLETPEFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89

Query: 87  CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
            +V+ TD  E+  LLK N+  N   ++         GS+QA  L WG E  I+    P D
Sbjct: 90  ADVVVTDLEELQDLLKMNINMNKHLVT---------GSVQAKVLKWGEE--IEGFPSPPD 138

Query: 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182
           +I+  D +Y E  LEPLL+T+  +SG +T I+  + 
Sbjct: 139 FILMADCIYYEESLEPLLKTLKDISGFETCIICCYE 174

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2

 Score = 80.1 bits (196), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 85/188 (45%), Gaps = 33/188 (17%)

Query: 21  HQLQFSQDPNSKHLGTT--VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVA 78
           H +Q  QD   +HLG    VWDA++V   YLE           +L+G+  +ELGAG G+ 
Sbjct: 29  HTIQIRQD--WRHLGVAAVVWDAAIVLSTYLEMGA-------VELRGRSAVELGAGTGLV 79

Query: 79  GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138
           G   ALLG +V  TD+   L  LK NV        Q N    +       EL WG   ++
Sbjct: 80  GIVAALLGAHVTITDRKVALEFLKSNV--------QANLPPHIQTKTVVKELTWGQ--NL 129

Query: 139 KAVAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFCWTRIT 197
            + +P  FD I+G D++Y E     LLQT+  L    + IL+            C  R  
Sbjct: 130 GSFSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLA-----------CRIRYE 178

Query: 198 ADNTIILL 205
            DN  + +
Sbjct: 179 RDNNFLAM 186

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 21/175 (12%)

Query: 5   RLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLK 64
           R +  S S    + + H ++  QD     +   VWDA++V   YLE            L+
Sbjct: 16  RFHDSSAS---FKFVNHNIEIKQDWKQLGVAAVVWDAALVLCMYLESE-------GIHLQ 65

Query: 65  GKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGS 124
              VIELGAG G+ G   ALLG  V  TD+   +  L+ NV  N  +        D L  
Sbjct: 66  NSSVIELGAGTGLVGIVAALLGAQVTITDRDLAMEFLRMNVRDNIPK--------DSLHR 117

Query: 125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179
           +    L+WG           +D+I+G D++Y E     LLQT   LS  ++ IL+
Sbjct: 118 VSVRALNWGKS---LEEFSTYDFILGADIIYLEETFPDLLQTFLHLSSQQSVILL 169

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6NDL7|MT21E_HUMAN Putative methyltransferase-like protein 21E pseudogene OS=Homo sapiens GN=METTL21EP PE=5 SV=2

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 17/171 (9%)

Query: 10  STSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVI 69
           +TS  +   +GH+++ ++  +    G  VW +++V   +LE N ++       +  K VI
Sbjct: 69  TTSWESFHFIGHEIRITEAMDC--YGAVVWPSALVLCYFLETNAKQ-----YNMVDKNVI 121

Query: 70  ELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE 129
           E+GAG G+     +LLG +V  TD  E+L  L+ N+  NT   S+  P        Q  E
Sbjct: 122 EIGAGTGLVSIVASLLGAHVTATDLPELLGNLQYNISRNTKMKSKHLP--------QVKE 173

Query: 130 LDWGN--EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178
           L WG   + +    +  FDYI+  DVVYA   LE LL T   L    T IL
Sbjct: 174 LSWGVALDTNFPRSSNNFDYILAADVVYAHPFLEELLITFDHLCKETTIIL 224

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q58DC7|MT21E_BOVIN Protein-lysine methyltransferase METTL21E OS=Bos taurus GN=METTL21E PE=2 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 17/161 (10%)

Query: 20  GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAG 79
           GH+++ ++  +    G  VW +++V   +LE N ++       L  K VIE+GAG G+  
Sbjct: 79  GHEIRINEATDC--YGAVVWPSALVLCYFLETNVKQ-----YNLVDKNVIEIGAGTGLVS 131

Query: 80  FGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--EDH 137
              +LLG +V  TD  E+L  L+ N+  NT   ++  P        Q  EL WG   + +
Sbjct: 132 IVASLLGAHVTATDLPELLGNLQYNISRNTKTKAKHLP--------QVKELSWGVALDKN 183

Query: 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178
               +  FDYI+  DVVYA   LE LL T   L    T IL
Sbjct: 184 FPRASINFDYILAADVVYAHPFLEELLVTFDHLCKETTVIL 224

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8CDZ2|MT21E_MOUSE Protein-lysine methyltransferase METTL21E OS=Mus musculus GN=Mettl21e PE=2 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 17/161 (10%)

Query: 20  GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAG 79
           GH++Q ++  +    G  VW +++V   +LE + ++       +  K VIE+GAG G+  
Sbjct: 52  GHEIQITEGKDC--YGAFVWPSALVLCYFLETHAKQ-----YNMVDKNVIEIGAGTGLVS 104

Query: 80  FGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--EDH 137
              +LLG  VI TD    LP L  N+++N SR ++M          Q  EL WG   + +
Sbjct: 105 IVASLLGARVIATD----LPELLGNLQYNISRNTKMKCKH----LPQVKELSWGVALDRN 156

Query: 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178
               +  FDYI+  DVVYA   LE LL T   L    T IL
Sbjct: 157 FPRSSNNFDYILAADVVYAHPFLEELLMTFDHLCKETTIIL 197

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q28IN4|MT21B_XENTR Protein-lysine methyltransferase METTL21B OS=Xenopus tropicalis GN=mettl21b PE=2 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 19/146 (13%)

Query: 34  LGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTD 93
           +   VWDA++    Y E+  +K  F     KGK+VIELGAG G+ G  ++LLG +V  TD
Sbjct: 53  VAAPVWDAALFLCGYFEE--QKLDF-----KGKKVIELGAGTGIVGILVSLLGGHVTLTD 105

Query: 94  QIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV 153
               L  +++NV  N   +S  NP        Q   L WG +   +     +D+++G D+
Sbjct: 106 LPHALSQIQKNVSAN---VSSNNPP-------QVCALSWGLDQ--EKFPQDYDFVLGADI 153

Query: 154 VYAEHLLEPLLQTIFALSGPKTTILV 179
           VY       L+QT+  L GP+T+I +
Sbjct: 154 VYLHDTYPLLIQTLQYLCGPQTSIFL 179

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5BLD8|MT21A_DANRE Protein-lysine methyltransferase METTL21A OS=Danio rerio GN=mettl21a PE=2 SV=1

 Score = 74.7 bits (182), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 63  LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 122
           LKGKRVIELGAG G+ G   ALLG NV  TD+   L  L  NV  N  +  Q        
Sbjct: 64  LKGKRVIELGAGTGLVGIVAALLGANVTITDREPALEFLTANVHENIPQGRQK------- 116

Query: 123 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179
            ++Q  EL WG    +      +D I+G D+VY E     LLQT+  LS   T +L+
Sbjct: 117 -AVQVSELTWGENLDLYPQG-GYDLILGADIVYLEETFPALLQTLEHLSSGDTVVLL 171

Probable methyltransferase.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4FV98|MT21B_BOVIN Protein-lysine methyltransferase METTL21B OS=Bos taurus GN=METTL21B PE=2 SV=1

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 20/161 (12%)

Query: 20  GHQLQFSQDPNSK-HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVA 78
           GH L  +++  S+  +   VWDA++    Y E             +GK+VIELGAG G+ 
Sbjct: 37  GHVLNITENFGSRLGVAARVWDAALSLCNYFESQN-------VDFRGKKVIELGAGTGIV 89

Query: 79  GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138
           G   AL G +V  TD   VL  ++ NV+ N        PG    G  Q   L WG + H+
Sbjct: 90  GILAALQGGDVTITDLPLVLEQIQGNVQANVP------PG----GRAQVRALSWGIDQHV 139

Query: 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179
                 +D ++G D+VY E     LL T+  L GP  TI +
Sbjct: 140 --FPGDYDLVLGADIVYLEPTFPLLLGTLRHLCGPHGTIYL 178

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
296087474	364	unnamed protein product [Vitis vinifera]	0.892	0.502	0.836	7e-88
225465726	314	PREDICTED: methyltransferase-like protei	0.892	0.582	0.836	1e-87
225436496	314	PREDICTED: methyltransferase-like protei	0.892	0.582	0.830	3e-87
255565427	314	conserved hypothetical protein [Ricinus	0.917	0.598	0.781	8e-82
449496188	309	PREDICTED: methyltransferase-like protei	0.887	0.588	0.775	3e-81
449456044	309	PREDICTED: methyltransferase-like protei	0.887	0.588	0.775	3e-81
297849112	322	hypothetical protein ARALYDRAFT_888039 [	0.892	0.568	0.754	8e-81
42571401	315	S-adenosylmethionine-dependent methyltra	0.887	0.577	0.754	2e-79
224106834	249	predicted protein [Populus trichocarpa]	0.892	0.734	0.819	3e-79
226501136	297	tumor-related protein [Zea mays] gi|1956	0.892	0.616	0.754	9e-79

>gi|296087474|emb|CBI34063.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 153/183 (83%), Positives = 167/183 (91%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSP+TS I  EVLGHQLQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKGRF P
Sbjct: 51  MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 110

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD
Sbjct: 111 SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 170

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180
             GS+Q  ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTIL+ 
Sbjct: 171 SFGSVQVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLG 230

Query: 181 FSL 183
           + +
Sbjct: 231 YEI 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465726|ref|XP_002263990.1| PREDICTED: methyltransferase-like protein 21D-like [Vitis vinifera]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 153/183 (83%), Positives = 167/183 (91%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSP+TS I  EVLGHQLQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKGRF P
Sbjct: 1   MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 120

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180
             GS+Q  ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTIL+ 
Sbjct: 121 SFGSVQVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLG 180

Query: 181 FSL 183
           + +
Sbjct: 181 YEI 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436496|ref|XP_002273361.1| PREDICTED: methyltransferase-like protein 21D [Vitis vinifera] gi|297734922|emb|CBI17156.3| unnamed protein product [Vitis vinifera]

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 167/183 (91%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSP+TS I  EVLGHQLQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKGRF P
Sbjct: 1   MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 120

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180
             GS++  ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTIL+ 
Sbjct: 121 SFGSVEVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLG 180

Query: 181 FSL 183
           + +
Sbjct: 181 YEI 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565427|ref|XP_002523704.1| conserved hypothetical protein [Ricinus communis] gi|223537008|gb|EEF38644.1| conserved hypothetical protein [Ricinus communis]

 Score =  308 bits (789), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 147/188 (78%), Positives = 161/188 (85%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSPS+ VI LEV+ HQLQF QDPNSKHLGTTVWDAS+VF K+LEKNCRKGRF P
Sbjct: 1   MEHDRLNSPSSCVITLEVMSHQLQFCQDPNSKHLGTTVWDASMVFAKFLEKNCRKGRFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+V+ TDQ EVLPLL RNVE NTSRI QM+  S 
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVVATDQKEVLPLLMRNVERNTSRIMQMDTNSV 120

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180
              SI+  ELDWGNEDHI+AV PPFDYIIGTDVVY EHLLEPLLQTIFALSGPKTTI++ 
Sbjct: 121 SFRSIKVEELDWGNEDHIRAVDPPFDYIIGTDVVYTEHLLEPLLQTIFALSGPKTTIMMG 180

Query: 181 FSLSMFSL 188
           + +   S+
Sbjct: 181 YEIRSTSV 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496188|ref|XP_004160067.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 142/183 (77%), Positives = 163/183 (89%), Gaps = 1/183 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           MEADRLNSPST  + +EVLGH+L+F QDPNSKHLGTTVWDAS+VFVK+LE+NCRKG+F P
Sbjct: 1   MEADRLNSPSTFTMTMEVLGHELRFYQDPNSKHLGTTVWDASLVFVKFLERNCRKGKFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCG+AGFGMALLGC+V+ TDQ EVLP+L RN+E NT  ++QMNP SD
Sbjct: 61  SKLKGKRVIELGAGCGLAGFGMALLGCDVVATDQREVLPILSRNIERNTPSLAQMNP-SD 119

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180
             GSI+A ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLLEPLL TI ALSGPKTTI++ 
Sbjct: 120 SFGSIRAAELDWGNEDHIKAVGPPFDFIIGTDVVYAEHLLEPLLMTIHALSGPKTTIMLG 179

Query: 181 FSL 183
           + +
Sbjct: 180 YEI 182

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456044|ref|XP_004145760.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 142/183 (77%), Positives = 163/183 (89%), Gaps = 1/183 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           MEADRLNSPST  + +EVLGH+L+F QDPNSKHLGTTVWDAS+VFVK+LE+NCRKG+F P
Sbjct: 1   MEADRLNSPSTFTMTMEVLGHELRFYQDPNSKHLGTTVWDASLVFVKFLERNCRKGKFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCG+AGFGMALLGC+V+ TDQ EVLP+L RN+E NT  ++QMNP SD
Sbjct: 61  SKLKGKRVIELGAGCGLAGFGMALLGCDVVATDQREVLPILSRNIERNTPSLAQMNP-SD 119

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180
             GSI+A ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLLEPLL TI ALSGPKTTI++ 
Sbjct: 120 SFGSIRAAELDWGNEDHIKAVGPPFDFIIGTDVVYAEHLLEPLLMTIHALSGPKTTIMLG 179

Query: 181 FSL 183
           + +
Sbjct: 180 YEI 182

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849112|ref|XP_002892437.1| hypothetical protein ARALYDRAFT_888039 [Arabidopsis lyrata subsp. lyrata] gi|297338279|gb|EFH68696.1| hypothetical protein ARALYDRAFT_888039 [Arabidopsis lyrata subsp. lyrata]

 Score =  305 bits (780), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 138/183 (75%), Positives = 159/183 (86%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           M+ DRLNSPST  + +EVLGH+L F+QDPNSKHLGTTVWDAS+VF KYL KNCRKGRF P
Sbjct: 1   MDPDRLNSPSTCTVTIEVLGHELNFAQDPNSKHLGTTVWDASMVFAKYLGKNCRKGRFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTS I QM PGS 
Sbjct: 61  SKLKGKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSTILQMTPGSA 120

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180
             GS++  ELDWGNEDHI+AV PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT+++ 
Sbjct: 121 SFGSLRVAELDWGNEDHIRAVGPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLG 180

Query: 181 FSL 183
           + +
Sbjct: 181 YEI 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571401|ref|NP_973791.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332190127|gb|AEE28248.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/183 (75%), Positives = 158/183 (86%), Gaps = 1/183 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           M+ DRLNSPST  + +EVLGH+L F+QDPNSKHLGTTVWDAS+VF KYL KN RKGRF  
Sbjct: 1   MDPDRLNSPSTCTVTIEVLGHELDFAQDPNSKHLGTTVWDASMVFAKYLGKNSRKGRFSS 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTSRI QMNPGS 
Sbjct: 61  SKLKGKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSRIVQMNPGS- 119

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180
             GS++  ELDWGNEDHI AV PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT+++ 
Sbjct: 120 AFGSLRVAELDWGNEDHITAVEPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLG 179

Query: 181 FSL 183
           + +
Sbjct: 180 YEI 182

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106834|ref|XP_002314301.1| predicted protein [Populus trichocarpa] gi|222850709|gb|EEE88256.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 150/183 (81%), Positives = 162/183 (88%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLN PSTS I  EVLGHQLQFSQDPNSKHLGTTVWDAS+V VK+LE+NCR+GRFCP
Sbjct: 1   MEPDRLNYPSTSAITFEVLGHQLQFSQDPNSKHLGTTVWDASMVLVKFLERNCRRGRFCP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+VI TDQIEVLPLL RN E NTSRI+Q +  SD
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVIATDQIEVLPLLMRNAERNTSRITQKDSNSD 120

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180
             GSIQ  ELDWGNEDHI+AV PPFDYIIGTDVVYAEHLLEPLLQT+ ALSGPKTTIL+ 
Sbjct: 121 SFGSIQVAELDWGNEDHIRAVDPPFDYIIGTDVVYAEHLLEPLLQTLLALSGPKTTILLG 180

Query: 181 FSL 183
           + +
Sbjct: 181 YEI 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501136|ref|NP_001147353.1| tumor-related protein [Zea mays] gi|195610456|gb|ACG27058.1| tumor-related protein [Zea mays] gi|413924052|gb|AFW63984.1| tumor protein [Zea mays]

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 138/183 (75%), Positives = 160/183 (87%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           M+ DRLNSP+TS I+LEV+GH+L  SQDPNSKHLGTTVWDAS+VFVK+LEKN RKGRFCP
Sbjct: 1   MDYDRLNSPNTSAISLEVMGHRLHISQDPNSKHLGTTVWDASMVFVKFLEKNSRKGRFCP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCG+AGFGM LLGC+V TTDQ+EVLPLL RNVE N S ISQ N  +D
Sbjct: 61  SKLKGKRVIELGAGCGLAGFGMTLLGCDVTTTDQVEVLPLLMRNVERNRSWISQSNSDTD 120

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180
            +GSI   ELDWGN++HIKAV PPFDYIIGTDV+Y+EHLL+PL++TI ALSGPKT IL+ 
Sbjct: 121 TIGSITVAELDWGNKEHIKAVEPPFDYIIGTDVIYSEHLLQPLMETITALSGPKTKILLG 180

Query: 181 FSL 183
           + +
Sbjct: 181 YEI 183

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2197234	316	AT1G73320 "AT1G73320" [Arabido	0.8	0.518	0.342	1.5e-21
TAIR|locus:2167618	234	AT5G44170 "AT5G44170" [Arabido	0.770	0.675	0.348	1.9e-19
RGD|1306228	274	Mettl21d "methyltransferase li	0.678	0.507	0.401	2.5e-19
MGI|MGI:2684917	228	Mettl21d "methyltransferase li	0.678	0.609	0.407	5.1e-19
UNIPROTKB|Q9H867	229	METTL21D "Protein-lysine methy	0.682	0.611	0.381	2.2e-18
ZFIN|ZDB-GENE-050320-145	218	mettl21a "methyltransferase li	0.697	0.655	0.383	3.6e-18
ZFIN|ZDB-GENE-060825-19	223	mettl21d "methyltransferase li	0.653	0.600	0.380	1.2e-17
UNIPROTKB|Q8WXB1	218	METTL21A "Protein-lysine methy	0.682	0.642	0.351	1.3e-15
MGI|MGI:1914349	218	Mettl21a "methyltransferase li	0.692	0.651	0.356	1.3e-15
RGD|1311824	218	Mettl21a "methyltransferase li	0.692	0.651	0.343	1.3e-15

TAIR|locus:2197234 AT1G73320 "AT1G73320" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 61/178 (34%), Positives = 97/178 (54%)

Query:     6 LNSPSTSVINLEVLGHQLQFSQDPNSKHL----GTTVWDASVVFVKYLEKNCRKGRFCPS 61
             L + S+  + L+  GH L   Q P S +     G+ +WD+ VV  K+LE +         
Sbjct:    86 LVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWDSGVVLGKFLEHSVDSKVL--- 142

Query:    62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDL 121
              L+GK+++ELG+GCG+ G   ALLG N + TD  + L LLK+N++ N  R        + 
Sbjct:   143 SLEGKKIVELGSGCGLVGCIAALLGGNAVLTDLPDRLRLLKKNIQTNLHR-------GNT 195

Query:   122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179
              GS    EL WG++     + P  DY++G+DV+Y+E  +  L++T+  L   +TTI +
Sbjct:   196 RGSAIVQELVWGDDPDPDLIEPFPDYVLGSDVIYSEEAVHHLVKTLLQLCSDQTTIFL 253

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2167618 AT5G44170 "AT5G44170" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 62/178 (34%), Positives = 89/178 (50%)

Query:    13 VINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEK----NCRKGRFCPSK------ 62
             VI+L V G +L   QD  S H+GT+VW  S++  K+ E+    +       P+       
Sbjct:     8 VIDLTVNGTKLSIQQDNGSMHVGTSVWPCSLILSKFAERWSTLDSSSSTTSPNPYAELFD 67

Query:    63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDL 121
              + +R IELG GCGVAG    LLG   ++ TD   V+P LK N++ N + +     G  L
Sbjct:    68 FRRRRGIELGTGCGVAGMAFYLLGLTEIVLTDIAPVMPALKHNLKRNKTAL-----GKSL 122

Query:   122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179
               SI    + W N D I A+ PPFD +I  DVVY E  +  L+  +  L      +L+
Sbjct:   123 KTSI----VYWNNRDQISALKPPFDLVIAADVVYIEESVGQLVTAMELLVADDGAVLL 176

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|1306228 Mettl21d "methyltransferase like 21D" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 61/152 (40%), Positives = 83/152 (54%)

Query:    27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
             Q   S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct:    77 QQYGSGGVGCVVWDAAIVLAKYLETPGFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 135

Query:    87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
              +VI TD  E+  LLK N+  N   ++         GS+QA  L WG  D I+ +  P D
Sbjct:   136 ADVIVTDLEELQDLLKMNINMNKHLVT---------GSVQAKVLKWG--DDIEDLMSP-D 183

Query:   147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178
             YI+  D +Y E  LEPLL+T+  LSG +T+I+
Sbjct:   184 YILMADCIYYEESLEPLLKTLKDLSGSETSII 215

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2684917 Mettl21d "methyltransferase like 21D" [Mus musculus (taxid:10090)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 62/152 (40%), Positives = 84/152 (55%)

Query:    27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
             Q   S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct:    31 QQYGSGGVGCVVWDAAIVLSKYLETPGFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89

Query:    87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
              +VI TD  E+  LLK N++ N   ++         GS+QA  L WG ED I+ +  P D
Sbjct:    90 ADVIVTDLEELQDLLKMNIDMNKHLVT---------GSVQAKVLKWG-ED-IEDLMSP-D 137

Query:   147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178
             YI+  D +Y E  LEPLL+T+  LSG +T I+
Sbjct:   138 YILMADCIYYEESLEPLLKTLKDLSGSETCII 169

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018023 "peptidyl-lysine trimethylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q9H867 METTL21D "Protein-lysine methyltransferase METTL21D" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 58/152 (38%), Positives = 82/152 (53%)

Query:    27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
             Q  +S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct:    31 QQYSSGGVGCVVWDAAIVLSKYLETPEFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89

Query:    87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
              +V+ TD  E+  LLK N+  N   ++         GS+QA  L WG E  I+    P D
Sbjct:    90 ADVVVTDLEELQDLLKMNINMNKHLVT---------GSVQAKVLKWGEE--IEGFPSPPD 138

Query:   147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178
             +I+  D +Y E  LEPLL+T+  +SG +T I+
Sbjct:   139 FILMADCIYYEESLEPLLKTLKDISGFETCII 170

GO:0005575 "cellular_component" evidence=ND

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0018023 "peptidyl-lysine trimethylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-050320-145 mettl21a "methyltransferase like 21A" [Danio rerio (taxid:7955)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 61/159 (38%), Positives = 80/159 (50%)

Query:    21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
             H+++ SQD     +   VWDA+VV   +LE     G+     LKGKRVIELGAG G+ G 
Sbjct:    29 HRIRLSQDWKRLGVAAVVWDAAVVLCMFLEM----GKV---DLKGKRVIELGAGTGLVGI 81

Query:    81 GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140
               ALLG NV  TD+   L  L  NV  N  +  Q         ++Q  EL WG    +  
Sbjct:    82 VAALLGANVTITDREPALEFLTANVHENIPQGRQK--------AVQVSELTWGENLDLYP 133

Query:   141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179
                 +D I+G D+VY E     LLQT+  LS   T +L+
Sbjct:   134 QGG-YDLILGADIVYLEETFPALLQTLEHLSSGDTVVLL 171

GO:0006479 "protein methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 56/147 (38%), Positives = 78/147 (53%)

Query:    34 LGTTVWDASVVFVKYLEKN--CRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVIT 91
             +G  VWDA++V  KYLE    C  G    S    K +IELGAG G+ G   A LG NV  
Sbjct:    33 VGCVVWDAAIVLSKYLETEQFCSIGSGV-SMWSSKNIIELGAGTGLVGLVAASLGANVTL 91

Query:    92 TDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 151
             TD  ++ PLL+ N++ N   I          GS+ A  L WG   ++    P   YI+  
Sbjct:    92 TDLEDLQPLLQLNIKKNQQLIHT--------GSVTAKVLKWGA--NVDDFLPHPHYILMA 141

Query:   152 DVVYAEHLLEPLLQTIFALSGPKTTIL 178
             D +Y E  +EPL++T+  L+GP+T I+
Sbjct:   142 DCIYYEQSVEPLVETLKLLAGPETCII 168

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8WXB1 METTL21A "Protein-lysine methyltransferase METTL21A" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 57/162 (35%), Positives = 82/162 (50%)

Query:    21 HQLQFSQDPNSKHLGTT--VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVA 78
             H +Q  QD   +HLG    VWDA++V   YLE           +L+G+  +ELGAG G+ 
Sbjct:    29 HTIQIRQD--WRHLGVAAVVWDAAIVLSTYLEMGA-------VELRGRSAVELGAGTGLV 79

Query:    79 GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138
             G   ALLG +V  TD+   L  LK NV+ N      + P       ++  EL WG   ++
Sbjct:    80 GIVAALLGAHVTITDRKVALEFLKSNVQAN------LPPHIQTKTVVK--ELTWGQ--NL 129

Query:   139 KAVAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179
              + +P  FD I+G D++Y E     LLQT+  L    + IL+
Sbjct:   130 GSFSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILL 171

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0006479 "protein methylation" evidence=IDA

GO:0018022 "peptidyl-lysine methylation" evidence=IDA

MGI|MGI:1914349 Mettl21a "methyltransferase like 21A" [Mus musculus (taxid:10090)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 57/160 (35%), Positives = 78/160 (48%)

Query:    21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
             H +Q  QD     +   VWDA+VV   YLE           +L+G   +ELGAG G+ G 
Sbjct:    29 HTIQIRQDWRQLGVAAVVWDAAVVLSMYLEMGA-------VELRGCSAVELGAGTGLVGI 81

Query:    81 GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140
               ALLG  V  TD+   L  LK NVE N      + P + +       EL WG   ++++
Sbjct:    82 VAALLGAQVTITDRKVALEFLKSNVEANLP--PHIQPKAVVK------ELTWGQ--NLES 131

Query:   141 VAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179
              +P  FD I+G DV+Y E     LLQT+  L    + IL+
Sbjct:   132 FSPGEFDLILGADVIYLEDTFTDLLQTLGHLCSNNSVILL 171

GO:0005575 "cellular_component" evidence=ND

GO:0006479 "protein methylation" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

RGD|1311824 Mettl21a "methyltransferase like 21A" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 55/160 (34%), Positives = 77/160 (48%)

Query:    21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
             H +Q  QD     +   VWDA++V   YLE           +L+G   +ELGAG G+ G 
Sbjct:    29 HTIQIRQDWGRLGVAAVVWDAAIVLSTYLEMGA-------VELRGCSAVELGAGTGLVGI 81

Query:    81 GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140
               ALLG +V  TD+   L  LK NVE N      + P       +   EL WG   ++ +
Sbjct:    82 VAALLGAHVTITDRKVALEFLKSNVEANLP--PHIQP------KVVVKELTWGQ--NLDS 131

Query:   141 VAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179
              +P  FD I+G D++Y E     LLQT+  L    + IL+
Sbjct:   132 FSPGEFDLILGADIIYLEDTFTDLLQTLGHLCSNNSVILL 171

GO:0006479 "protein methylation" evidence=ISO

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	8e-33
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	6e-07
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	5e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	6e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.002

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score =  115 bits (290), Expect = 8e-33
 Identities = 56/150 (37%), Positives = 74/150 (49%), Gaps = 17/150 (11%)

Query: 35  GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITT 92
           G  VWDA+VV  KYLE    K     + L G  V+ELG+G G+ G  +ALL  G +V  T
Sbjct: 18  GGHVWDAAVVLSKYLEM---KITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTIT 74

Query: 93  DQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP-PFDYIIGT 151
           D  E + L+K+N+E N            L   + A  LDWG +       P P D I+  
Sbjct: 75  DLEEAIELMKKNIELNG-----------LSSKVTAKVLDWGEDLPDDVFDPHPVDLILAA 123

Query: 152 DVVYAEHLLEPLLQTIFALSGPKTTILVMF 181
           D VY E     L +T+  L G +T ILV +
Sbjct: 124 DCVYNEDSFPLLEKTLNDLLGKETVILVAY 153

Length = 170

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 28/143 (19%)

Query: 39  WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEV 97
           W    V  +Y++ +       P  ++GKRV++LGAG G+     A  G   V+  D    
Sbjct: 61  WAGGQVLARYIDDH-------PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW 113

Query: 98  L-PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA 156
           L   ++ N   N   I      +DL+GS                  P FD ++  D+ Y 
Sbjct: 114 LEQAIRLNAAANGVSILFT--HADLIGS-----------------PPAFDLLLAGDLFYN 154

Query: 157 EHLLEPLLQTIFALSGPKTTILV 179
               + L+     L+     +LV
Sbjct: 155 HTEADRLIPWKDRLAEAGAAVLV 177

Length = 218

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 18/73 (24%)

Query: 63  LKGKRVIELGAGCGVAGFGMALLG-CNVITTD-QIEVLPLLKRN-------VEWNTSRIS 113
           L+GK V++LGAG G+   G ALLG   V+  D   E L + + N       VE+  + +S
Sbjct: 44  LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVS 103

Query: 114 Q---------MNP 117
                     MNP
Sbjct: 104 DFRGKFDTVIMNP 116

Length = 198

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 32/126 (25%)

Query: 57  RFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMN 116
           R  P    G RV+++G G G+    +   G +V   D                       
Sbjct: 15  RLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVD----------------------- 51

Query: 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEP--LLQTIFALSGPK 174
                      +     +      +A  +D I   +V+  EHL +P  LLQ +  L  P 
Sbjct: 52  -----PSPAAVLIFSLFDAPDPAVLAGKYDLITAFEVL--EHLPDPPALLQQLRELLKPG 104

Query: 175 TTILVM 180
             +L+ 
Sbjct: 105 GVLLIS 110

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 21/119 (17%)

Query: 64  KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120
            G RV+++G G G     +A L  G  V   D   E+L L + N +              
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK------------LA 48

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179
           L   I  V+ D  +      +   FD +    +      L  LL  + +L  P   +++
Sbjct: 49  LGPRITFVQGDAPDAL---DLLEGFDAVF---IGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.97
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.82
COG4123	248	Predicted O-methyltransferase [General function pr	99.82
COG3897	218	Predicted methyltransferase [General function pred	99.8
KOG3201	201	consensus Uncharacterized conserved protein [Funct	99.8
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.78
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.77
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.76
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.76
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.75
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.75
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.74
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.71
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.7
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.7
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.69
PRK11207	197	tellurite resistance protein TehB; Provisional	99.67
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.65
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.65
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.65
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.64
PRK14967	223	putative methyltransferase; Provisional	99.64
PLN02244	340	tocopherol O-methyltransferase	99.63
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.63
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.61
PRK12335	287	tellurite resistance protein TehB; Provisional	99.6
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.6
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.6
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.6
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.6
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.59
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.58
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.58
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.58
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.57
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.57
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.57
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.57
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.56
PRK14968	188	putative methyltransferase; Provisional	99.56
PLN02336	475	phosphoethanolamine N-methyltransferase	99.55
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.55
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.55
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.54
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.54
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.54
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.53
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.52
COG2890	280	HemK Methylase of polypeptide chain release factor	99.52
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.51
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.51
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.5
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.5
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.5
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.49
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.49
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.49
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.49
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.49
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.49
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.48
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.48
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.48
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.48
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.47
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.46
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.46
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.45
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.44
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.44
PRK08317	241	hypothetical protein; Provisional	99.44
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.44
PLN02490	340	MPBQ/MSBQ methyltransferase	99.43
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.43
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.43
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.43
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.42
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.42
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.42
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.41
PRK04266	226	fibrillarin; Provisional	99.41
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.41
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.41
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.4
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.4
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.4
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.39
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.39
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.37
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.37
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.36
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.35
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.35
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.35
PRK07402	196	precorrin-6B methylase; Provisional	99.35
PRK05785	226	hypothetical protein; Provisional	99.34
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.34
PLN02336	475	phosphoethanolamine N-methyltransferase	99.34
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.32
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.32
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.31
PRK06922	677	hypothetical protein; Provisional	99.31
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.31
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.31
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.3
PRK06202	232	hypothetical protein; Provisional	99.29
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.29
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.29
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.29
KOG1271	227	consensus Methyltransferases [General function pre	99.28
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.28
KOG2920	282	consensus Predicted methyltransferase [General fun	99.28
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.28
PLN02672	1082	methionine S-methyltransferase	99.27
PHA03412	241	putative methyltransferase; Provisional	99.26
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.26
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.26
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.26
KOG4300	252	consensus Predicted methyltransferase [General fun	99.25
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.25
PHA03411	279	putative methyltransferase; Provisional	99.25
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.24
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.23
PLN03075	296	nicotianamine synthase; Provisional	99.23
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.23
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.22
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.21
KOG2904	328	consensus Predicted methyltransferase [General fun	99.21
TIGR03438	301	probable methyltransferase. This model represents	99.21
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.2
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.19
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.19
PTZ00146	293	fibrillarin; Provisional	99.19
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.18
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.18
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.18
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.17
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.17
PRK04457	262	spermidine synthase; Provisional	99.17
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.17
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.14
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.14
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.14
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.11
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.1
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.08
PLN02476	278	O-methyltransferase	99.07
TIGR00438	188	rrmJ cell division protein FtsJ.	99.07
COG4122	219	Predicted O-methyltransferase [General function pr	99.05
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.04
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.03
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.03
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.02
PRK00811	283	spermidine synthase; Provisional	99.01
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	99.0
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.99
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.98
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.98
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.96
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.96
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.94
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.94
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.92
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.92
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.91
PRK04148	134	hypothetical protein; Provisional	98.9
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.89
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.87
KOG3010	261	consensus Methyltransferase [General function pred	98.86
KOG2899	288	consensus Predicted methyltransferase [General fun	98.85
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.84
KOG2361	264	consensus Predicted methyltransferase [General fun	98.83
PRK03612	521	spermidine synthase; Provisional	98.83
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.82
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.79
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.77
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.76
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.75
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.75
COG2520	341	Predicted methyltransferase [General function pred	98.75
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.73
PRK01581	374	speE spermidine synthase; Validated	98.73
PLN02366	308	spermidine synthase	98.68
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.67
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.65
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.6
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.59
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.58
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.56
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.55
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.5
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.46
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.43
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.43
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.41
COG4076	252	Predicted RNA methylase [General function predicti	98.37
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.35
PLN02823	336	spermine synthase	98.34
COG2521	287	Predicted archaeal methyltransferase [General func	98.34
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.33
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.33
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.31
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.29
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.29
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.27
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.25
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.25
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.25
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.23
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.21
KOG1501	636	consensus Arginine N-methyltransferase [General fu	98.2
KOG2940	325	consensus Predicted methyltransferase [General fun	98.19
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.17
PRK00536	262	speE spermidine synthase; Provisional	98.17
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.16
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.14
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.12
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.11
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.09
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.06
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.0
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.97
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.93
KOG2497	262	consensus Predicted methyltransferase [General fun	97.92
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.92
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.9
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.88
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.85
PRK10742	250	putative methyltransferase; Provisional	97.84
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.83
PF13679	141	Methyltransf_32: Methyltransferase domain	97.82
PHA01634	156	hypothetical protein	97.8
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.79
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.78
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.76
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.72
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.72
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.7
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.66
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.65
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.6
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.59
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.57
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.47
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.4
KOG2730	263	consensus Methylase [General function prediction o	97.35
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.26
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.24
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.13
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.12
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.98
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.98
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.88
COG1568	354	Predicted methyltransferases [General function pre	96.87
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.87
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.83
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.8
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.71
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.64
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.6
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.58
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.58
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.42
KOG2078	495	consensus tRNA modification enzyme [RNA processing	96.29
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.26
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.15
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.06
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.06
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.04
KOG1227	351	consensus Putative methyltransferase [General func	96.01
PRK11524	284	putative methyltransferase; Provisional	95.87
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.87
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	95.76
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.75
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.71
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	95.55
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	95.49
PRK13699	227	putative methylase; Provisional	95.43
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.42
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.28
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.09
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.09
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	95.06
COG0286	489	HsdM Type I restriction-modification system methyl	94.73
PLN02668	386	indole-3-acetate carboxyl methyltransferase	94.69
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.53
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	94.53
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	94.51
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	94.46
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	94.42
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	94.33
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.28
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.12
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	94.01
KOG1331	293	consensus Predicted methyltransferase [General fun	93.85
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	93.82
KOG4058	199	consensus Uncharacterized conserved protein [Funct	93.81
COG2961	279	ComJ Protein involved in catabolism of external DN	93.62
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.62
KOG3924	419	consensus Putative protein methyltransferase invol	93.43
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.36
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.07
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.06
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.03
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	92.87
PRK10458	467	DNA cytosine methylase; Provisional	92.78
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	92.73
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	92.69
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	92.59
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	92.53
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.45
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	92.38
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	91.67
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.65
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.44
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	91.29
PRK12548	289	shikimate 5-dehydrogenase; Provisional	91.29
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	91.23
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	90.98
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	90.69
PF03269	177	DUF268: Caenorhabditis protein of unknown function	90.66
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	90.6
PLN02586	360	probable cinnamyl alcohol dehydrogenase	90.6
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	90.45
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	90.43
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	90.32
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	90.17
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	90.08
PRK06124	256	gluconate 5-dehydrogenase; Provisional	89.51
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	89.49
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	89.43
KOG3115	249	consensus Methyltransferase-like protein [General	89.3
KOG2912	419	consensus Predicted DNA methylase [Function unknow	88.86
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	88.8
PRK11524	284	putative methyltransferase; Provisional	88.7
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	88.5
COG1565	370	Uncharacterized conserved protein [Function unknow	88.16
COG3392	330	Adenine-specific DNA methylase [DNA replication, r	88.11
COG1255	129	Uncharacterized protein conserved in archaea [Func	88.01
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.98
PRK07326	237	short chain dehydrogenase; Provisional	87.94
PRK06139	330	short chain dehydrogenase; Provisional	87.93
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	87.85
PLN02178	375	cinnamyl-alcohol dehydrogenase	87.7
PLN02740	381	Alcohol dehydrogenase-like	87.68
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	87.19
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	87.16
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	87.0
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.98
PLN02514	357	cinnamyl-alcohol dehydrogenase	86.86
PRK08265	261	short chain dehydrogenase; Provisional	86.68
PRK05867	253	short chain dehydrogenase; Provisional	86.65
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	86.34
PRK07109	334	short chain dehydrogenase; Provisional	86.26
PRK06701	290	short chain dehydrogenase; Provisional	86.18
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	86.17
PRK08324	681	short chain dehydrogenase; Validated	85.92
PRK08213	259	gluconate 5-dehydrogenase; Provisional	85.85
PRK07063	260	short chain dehydrogenase; Provisional	85.85
PRK05854	313	short chain dehydrogenase; Provisional	85.74
PRK06949	258	short chain dehydrogenase; Provisional	85.58
PRK08339	263	short chain dehydrogenase; Provisional	85.2
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	85.14
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	85.1
COG3315	297	O-Methyltransferase involved in polyketide biosynt	84.7
PRK07523	255	gluconate 5-dehydrogenase; Provisional	84.64
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	84.62
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.45
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	84.42
PRK05876	275	short chain dehydrogenase; Provisional	84.39
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	84.19
PRK08862	227	short chain dehydrogenase; Provisional	84.18
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	84.1
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.9
PRK08267	260	short chain dehydrogenase; Provisional	83.89
PRK07097	265	gluconate 5-dehydrogenase; Provisional	83.71
PRK07806	248	short chain dehydrogenase; Provisional	83.65
PRK07062	265	short chain dehydrogenase; Provisional	83.65
COG4798	238	Predicted methyltransferase [General function pred	83.35
PRK05866	293	short chain dehydrogenase; Provisional	83.23
PRK07814	263	short chain dehydrogenase; Provisional	83.2
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	83.14
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	83.1
PRK06172	253	short chain dehydrogenase; Provisional	82.82
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	82.57
PRK11730	715	fadB multifunctional fatty acid oxidation complex	82.47
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	82.36
PRK09242	257	tropinone reductase; Provisional	82.32
PRK07035	252	short chain dehydrogenase; Provisional	82.22
PRK08085	254	gluconate 5-dehydrogenase; Provisional	82.12
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	82.05
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	81.98
PRK06194	287	hypothetical protein; Provisional	81.97
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	81.91
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.86
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	81.67
PRK06181	263	short chain dehydrogenase; Provisional	81.6
PRK06125	259	short chain dehydrogenase; Provisional	81.58
PRK05872	296	short chain dehydrogenase; Provisional	81.54
PRK07478	254	short chain dehydrogenase; Provisional	81.41
PRK07774	250	short chain dehydrogenase; Provisional	81.4
KOG3350	217	consensus Uncharacterized conserved protein [Funct	81.34
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	81.28
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	81.23
KOG0725	270	consensus Reductases with broad range of substrate	81.08
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	81.03
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	81.02
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	80.97
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.96
PRK07890	258	short chain dehydrogenase; Provisional	80.96
PLN03209	576	translocon at the inner envelope of chloroplast su	80.96
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	80.85
PRK09291	257	short chain dehydrogenase; Provisional	80.79
PRK08589	272	short chain dehydrogenase; Validated	80.77
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	80.77
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	80.75
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	80.74
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	80.71
COG4301	321	Uncharacterized conserved protein [Function unknow	80.69
PRK08703	239	short chain dehydrogenase; Provisional	80.51
PRK08306	296	dipicolinate synthase subunit A; Reviewed	80.14
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	80.05

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.97  E-value=5.2e-31  Score=200.04  Aligned_cols=165  Identities=38%  Similarity=0.608  Sum_probs=101.3

Q ss_pred             CeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcch
Q 028673           20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEV   97 (205)
Q Consensus        20 ~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~   97 (205)
                      +..+.|++.. ..++|..+|+++.+|++||..+.... +....+++++|||||||+|++|+++++.  +++|++||++++
T Consensus         3 ~~~l~i~e~~-~~~~G~~vW~aa~~La~~l~~~~~~~-~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~   80 (173)
T PF10294_consen    3 NKTLQIEEDW-GDGTGGKVWPAALVLARYLLSHSESE-FNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEV   80 (173)
T ss_dssp             ---------------------HHHHHHHHHHH--------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-H
T ss_pred             cccccccccc-ccCCcEEEechHHHHHHHHHHhcccc-cchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchh
Confidence            4567788777 45899999999999999999853111 1145778999999999999999999999  567999999669


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcE
Q 028673           98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT  176 (205)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~  176 (205)
                      ++.++.|++.|+.         ....++.+..++|++..... ....+||+|+++||+|+.+.+++|++++.+++++++.
T Consensus        81 l~~l~~Ni~~N~~---------~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~  151 (173)
T PF10294_consen   81 LELLRRNIELNGS---------LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK  151 (173)
T ss_dssp             HHHHHHHHHTT-----------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred             hHHHHHHHHhccc---------cccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence            9999999999963         12467999999999853211 2245899999999999999999999999999999999


Q ss_pred             EEEEEeeccchhHHHHHHhh
Q 028673          177 ILVMFSLSMFSLTFFCWTRI  196 (205)
Q Consensus       177 ~~i~~~~r~~~~~~~~~~~~  196 (205)
                      ++++++.|...... +++++
T Consensus       152 vl~~~~~R~~~~~~-F~~~~  170 (173)
T PF10294_consen  152 VLLAYKRRRKSEQE-FFDRL  170 (173)
T ss_dssp             EEEEEE-S-TGGCH-HHHHH
T ss_pred             EEEEeCEecHHHHH-HHHHh
Confidence            99999999765543 33444

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.82  E-value=2.1e-19  Score=136.05  Aligned_cols=137  Identities=25%  Similarity=0.339  Sum_probs=107.3

Q ss_pred             EEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE--EEEEcC-cchH
Q 028673           22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVL   98 (205)
Q Consensus        22 ~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~--v~~~D~-~~~l   98 (205)
                      ++++.+.++.+..+ .+-.++.+|++++...           ++++|||+|||+|.+|+.+++.+..  |+++|+ +.++
T Consensus         1 ~~~~~~~~gvFs~~-~~d~~t~lL~~~l~~~-----------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~   68 (170)
T PF05175_consen    1 ELEFITHPGVFSPP-RLDAGTRLLLDNLPKH-----------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL   68 (170)
T ss_dssp             EEEEEEETTSTTTT-SHHHHHHHHHHHHHHH-----------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH
T ss_pred             CEEEEECCCeeCCC-CCCHHHHHHHHHHhhc-----------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence            46788888766533 4456788999999875           5789999999999999999998765  999999 7899


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc-----ChHhHHHHHHHhhCC
Q 028673           99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGP  173 (205)
Q Consensus        99 ~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~  173 (205)
                      +.+++|++.|+.            .++++...|+.+..    ...+||+|++|++++...     ....+++...++|+|
T Consensus        69 ~~a~~n~~~n~~------------~~v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~  132 (170)
T PF05175_consen   69 ELAKRNAERNGL------------ENVEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP  132 (170)
T ss_dssp             HHHHHHHHHTTC------------TTEEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE
T ss_pred             HHHHHHHHhcCc------------cccccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccC
Confidence            999999999964            22777776665432    257999999999977644     367889999999999


Q ss_pred             CcEEEEEEeeccc
Q 028673          174 KTTILVMFSLSMF  186 (205)
Q Consensus       174 ~g~~~i~~~~r~~  186 (205)
                      ||.++++......
T Consensus       133 ~G~l~lv~~~~~~  145 (170)
T PF05175_consen  133 GGRLFLVINSHLG  145 (170)
T ss_dssp             EEEEEEEEETTSC
T ss_pred             CCEEEEEeecCCC
Confidence            9999998875443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.82  E-value=1.2e-19  Score=143.02  Aligned_cols=140  Identities=24%  Similarity=0.289  Sum_probs=117.6

Q ss_pred             EcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-
Q 028673           18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-   94 (205)
Q Consensus        18 ~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~-   94 (205)
                      +.+..+.|.|.+.+...|..    +++|++|....           ..++|||||||+|++|+++|++ . ++++++|+ 
T Consensus        13 ~~~~~~~I~q~~~~~~~~~D----aiLL~~~~~~~-----------~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq   77 (248)
T COG4123          13 FTFKQFFIIQDRCGFRYGTD----AILLAAFAPVP-----------KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQ   77 (248)
T ss_pred             ccccceEEEeCCCccccccH----HHHHHhhcccc-----------cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeC
Confidence            35778999999999999988    99999999543           3789999999999999999988 3 57999999 


Q ss_pred             cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc----------------
Q 028673           95 IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----------------  158 (205)
Q Consensus        95 ~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~----------------  158 (205)
                      +++.+.|++|++.|.           +.+++++.+.|..+...... ..+||+|++|+++|...                
T Consensus        78 ~~~a~~A~~nv~ln~-----------l~~ri~v~~~Di~~~~~~~~-~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~  145 (248)
T COG4123          78 EEAAEMAQRNVALNP-----------LEERIQVIEADIKEFLKALV-FASFDLIICNPPYFKQGSRLNENPLRAIARHEI  145 (248)
T ss_pred             HHHHHHHHHHHHhCc-----------chhceeEehhhHHHhhhccc-ccccCEEEeCCCCCCCccccCcChhhhhhhhhh
Confidence            789999999999995           46899999988776643322 33799999999998732                


Q ss_pred             --ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          159 --LLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       159 --~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                        .++.+++...+++||+|.++++++.-
T Consensus       146 ~~~le~~i~~a~~~lk~~G~l~~V~r~e  173 (248)
T COG4123         146 TLDLEDLIRAAAKLLKPGGRLAFVHRPE  173 (248)
T ss_pred             cCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence              36789999999999999999998743

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.80  E-value=9.6e-20  Score=136.77  Aligned_cols=158  Identities=22%  Similarity=0.349  Sum_probs=124.9

Q ss_pred             CCCCCCCccEEEEEEcCeEEEEEeCCC--------CccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCc
Q 028673            4 DRLNSPSTSVINLEVLGHQLQFSQDPN--------SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC   75 (205)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~i~q~~~--------~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGt   75 (205)
                      ..+..|...++.+...+..-...+...        ..-++...|.+++.||+|+..+       |+..+|++|||+|+|+
T Consensus        18 ~~~p~p~~Pe~rl~la~~~~~l~~~~~e~l~~ig~pPpfwa~~WagG~~lAR~i~~~-------PetVrgkrVLd~gags   90 (218)
T COG3897          18 GLLPPPHVPEIRLHLADEAHELWDRAKEELRLIGLPPPFWAFAWAGGQVLARYIDDH-------PETVRGKRVLDLGAGS   90 (218)
T ss_pred             ccCCCCCCchhheeecccccchHhHhHHHHHhcCCCchHHHHHHhhhHHHHHHHhcC-------ccccccceeeeccccc
Confidence            344555566777766654433333221        2347889999999999999998       8899999999999999


Q ss_pred             cHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEccc
Q 028673           76 GVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV  153 (205)
Q Consensus        76 Gl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~  153 (205)
                      |+.++++++.|+. |+++|+ +..++.++.|++.|+.             .+.+...|...      .++.||+|+++|+
T Consensus        91 gLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-------------~i~~~~~d~~g------~~~~~Dl~LagDl  151 (218)
T COG3897          91 GLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-------------SILFTHADLIG------SPPAFDLLLAGDL  151 (218)
T ss_pred             ChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-------------eeEEeeccccC------CCcceeEEEeece
Confidence            9999999999997 999999 7788999999999975             45555544332      3568999999999


Q ss_pred             ccCCcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          154 VYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       154 ~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      +|.......++....++...|-.+++..+.|..-
T Consensus       152 fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l  185 (218)
T COG3897         152 FYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL  185 (218)
T ss_pred             ecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence            9999999999997777777777778778877764

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=1.8e-20  Score=136.48  Aligned_cols=142  Identities=27%  Similarity=0.422  Sum_probs=114.1

Q ss_pred             ccccc-ccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCC-ccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHH
Q 028673           33 HLGTT-VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAG-CGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEW  107 (205)
Q Consensus        33 ~~g~~-~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcG-tGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~  107 (205)
                      .||.. +||++.+||.++.+.       +..++|++|||||.| ||+.|+++|....  .|..||. +++++..++....
T Consensus         4 ntgnvciwpseeala~~~l~~-------~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~   76 (201)
T KOG3201|consen    4 NTGNVCIWPSEEALAWTILRD-------PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNS   76 (201)
T ss_pred             CCCcEEecccHHHHHHHHHhc-------hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhc
Confidence            45655 999999999999987       678899999999999 6999999998754  5999999 7788888888777


Q ss_pred             hhhhhccCCCCCCCCCceEEEE-eecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          108 NTSRISQMNPGSDLLGSIQAVE-LDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       108 n~~~~~~~~~~~~~~~~i~~~~-~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      |...         ....+.+.. ..|+..  ......+||+|+++||+|..+..+.|.++++.+|+|.|..++..|+|..
T Consensus        77 n~~s---------~~tsc~vlrw~~~~aq--sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~  145 (201)
T KOG3201|consen   77 NMAS---------SLTSCCVLRWLIWGAQ--SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ  145 (201)
T ss_pred             cccc---------ccceehhhHHHHhhhH--HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc
Confidence            7431         112232222 222322  2233568999999999999999999999999999999999999999999


Q ss_pred             hhHHHH
Q 028673          187 SLTFFC  192 (205)
Q Consensus       187 ~~~~~~  192 (205)
                      ++..|.
T Consensus       146 sL~kF~  151 (201)
T KOG3201|consen  146 SLQKFL  151 (201)
T ss_pred             hHHHHH
Confidence            998765

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.78  E-value=7.5e-19  Score=136.60  Aligned_cols=111  Identities=19%  Similarity=0.229  Sum_probs=94.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +.|++|||+|||-|+++..+|+.|++|+++|. +++++.++..+..++.             .++....   ..+++...
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv-------------~i~y~~~---~~edl~~~  121 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV-------------NIDYRQA---TVEDLASA  121 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc-------------cccchhh---hHHHHHhc
Confidence            68999999999999999999999999999999 7899999999988865             2233332   22223333


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      .++||+|+|.+++.|..+.+.+++.+.+++||||.++++...|+....
T Consensus       122 ~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~  169 (243)
T COG2227         122 GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAY  169 (243)
T ss_pred             CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHH
Confidence            479999999999999999999999999999999999999999988654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.77  E-value=3.1e-18  Score=139.30  Aligned_cols=140  Identities=23%  Similarity=0.304  Sum_probs=103.5

Q ss_pred             cCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cc
Q 028673           19 LGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IE   96 (205)
Q Consensus        19 ~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~   96 (205)
                      ...++.|.-+|+ -.+|+-..+.+.+..++|...         ..++++|||+|||||+++++++++|++ |+++|+ |.
T Consensus       126 ~~~~~~I~idPg-~AFGTG~H~TT~lcl~~l~~~---------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~  195 (295)
T PF06325_consen  126 PPDEIVIEIDPG-MAFGTGHHPTTRLCLELLEKY---------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPL  195 (295)
T ss_dssp             STTSEEEEESTT-SSS-SSHCHHHHHHHHHHHHH---------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCH
T ss_pred             CCCcEEEEECCC-CcccCCCCHHHHHHHHHHHHh---------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHH
Confidence            455667777884 334444458899999999875         557889999999999999999999995 999999 88


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcE
Q 028673           97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT  176 (205)
Q Consensus        97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~  176 (205)
                      +++.+++|++.|+.           ..++.+.     ....  ....+||+|++|   -..+.+..+...+.++++|||.
T Consensus       196 Av~~a~~N~~~N~~-----------~~~~~v~-----~~~~--~~~~~~dlvvAN---I~~~vL~~l~~~~~~~l~~~G~  254 (295)
T PF06325_consen  196 AVEAARENAELNGV-----------EDRIEVS-----LSED--LVEGKFDLVVAN---ILADVLLELAPDIASLLKPGGY  254 (295)
T ss_dssp             HHHHHHHHHHHTT------------TTCEEES-----CTSC--TCCS-EEEEEEE---S-HHHHHHHHHHCHHHEEEEEE
T ss_pred             HHHHHHHHHHHcCC-----------CeeEEEE-----Eecc--cccccCCEEEEC---CCHHHHHHHHHHHHHhhCCCCE
Confidence            99999999999976           2344442     1111  123799999998   2234455677778888999999


Q ss_pred             EEEEEeeccchhH
Q 028673          177 ILVMFSLSMFSLT  189 (205)
Q Consensus       177 ~~i~~~~r~~~~~  189 (205)
                      ++++--.......
T Consensus       255 lIlSGIl~~~~~~  267 (295)
T PF06325_consen  255 LILSGILEEQEDE  267 (295)
T ss_dssp             EEEEEEEGGGHHH
T ss_pred             EEEccccHHHHHH
Confidence            9999887766544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=5e-18  Score=137.11  Aligned_cols=140  Identities=24%  Similarity=0.302  Sum_probs=106.2

Q ss_pred             eEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchH
Q 028673           21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVL   98 (205)
Q Consensus        21 ~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l   98 (205)
                      ..+.++-+|+ .-+|+-..+.+.+..+++.+.         ..++++|||+|||+|+++|++++.|+. |+++|+ |.++
T Consensus       129 ~~~~i~lDPG-lAFGTG~HpTT~lcL~~Le~~---------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV  198 (300)
T COG2264         129 DELNIELDPG-LAFGTGTHPTTSLCLEALEKL---------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV  198 (300)
T ss_pred             CceEEEEccc-cccCCCCChhHHHHHHHHHHh---------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH
Confidence            4677777884 344555558899999999875         458899999999999999999999996 999999 7799


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673           99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus        99 ~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                      +.++.|+++|+..           ..++...   ...... ....+||+|++|  | -.+.+..|...+..+++|||.++
T Consensus       199 ~aa~eNa~~N~v~-----------~~~~~~~---~~~~~~-~~~~~~DvIVAN--I-LA~vl~~La~~~~~~lkpgg~lI  260 (300)
T COG2264         199 EAARENARLNGVE-----------LLVQAKG---FLLLEV-PENGPFDVIVAN--I-LAEVLVELAPDIKRLLKPGGRLI  260 (300)
T ss_pred             HHHHHHHHHcCCc-----------hhhhccc---ccchhh-cccCcccEEEeh--h-hHHHHHHHHHHHHHHcCCCceEE
Confidence            9999999999752           1111111   222111 124699999998  3 33556688889999999999999


Q ss_pred             EEEeeccchh
Q 028673          179 VMFSLSMFSL  188 (205)
Q Consensus       179 i~~~~r~~~~  188 (205)
                      ++--...+..
T Consensus       261 lSGIl~~q~~  270 (300)
T COG2264         261 LSGILEDQAE  270 (300)
T ss_pred             EEeehHhHHH
Confidence            9987666643

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.76  E-value=1.2e-17  Score=131.67  Aligned_cols=150  Identities=31%  Similarity=0.465  Sum_probs=120.5

Q ss_pred             CccccccccccHHHHHHHHhhhccCCCCCCCC--C--CCCeEEEeCCCccHHHHHHHH-hCCEEEEEcCcchHHHHHHHH
Q 028673           31 SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSK--L--KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNV  105 (205)
Q Consensus        31 ~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~--~--~~~~VLdlGcGtGl~sl~~a~-~g~~v~~~D~~~~l~~~~~n~  105 (205)
                      .......+|+++-.++.++.............  +  +..+|||||+|||+.|+.+|. .+++|+.+|.+..+..++.|.
T Consensus        49 ~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~  128 (248)
T KOG2793|consen   49 EQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNR  128 (248)
T ss_pred             ccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhh
Confidence            34577899999999999998764321110011  1  245699999999999999998 577899999998888898888


Q ss_pred             HHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC-ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          106 EWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       106 ~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~-fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..|.....+      ....+.+..++|++........+. ||+|+++||+|.++.++.++.+++.++..++.++++++.|
T Consensus       129 ~~~~~~l~~------~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr  202 (248)
T KOG2793|consen  129 DKNNIALNQ------LGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR  202 (248)
T ss_pred             hhhhhhhhh------cCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence            777664432      234799999999998766554455 9999999999999999999999999999899999999999


Q ss_pred             cc
Q 028673          185 MF  186 (205)
Q Consensus       185 ~~  186 (205)
                      ..
T Consensus       203 ~~  204 (248)
T KOG2793|consen  203 RD  204 (248)
T ss_pred             cc
Confidence            85

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=3.6e-17  Score=131.55  Aligned_cols=142  Identities=20%  Similarity=0.273  Sum_probs=108.7

Q ss_pred             EEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC
Q 028673           17 EVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ   94 (205)
Q Consensus        17 ~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~   94 (205)
                      ...++.++|...|+.++.+ .+..+|.+|++.+..          ...+ +|||||||.|.+|+.+++...  +++++|.
T Consensus       123 ~~~~~~~~~~t~pGVFS~~-~lD~GS~lLl~~l~~----------~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDv  190 (300)
T COG2813         123 YLLGHELTFKTLPGVFSRD-KLDKGSRLLLETLPP----------DLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDV  190 (300)
T ss_pred             hhccCceEEEeCCCCCcCC-CcChHHHHHHHhCCc----------cCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEec
Confidence            3448899999999766655 677788899888844          3344 999999999999999999975  6999999


Q ss_pred             -cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC-----hHhHHHHHH
Q 028673           95 -IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----LEPLLQTIF  168 (205)
Q Consensus        95 -~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~-----~~~ll~~~~  168 (205)
                       ..+++.+++|++.|+.            .+..+..-+..+     ...++||+||+|++++.-..     ...+++...
T Consensus       191 n~~Av~~ar~Nl~~N~~------------~~~~v~~s~~~~-----~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~  253 (300)
T COG2813         191 NARAVESARKNLAANGV------------ENTEVWASNLYE-----PVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAA  253 (300)
T ss_pred             CHHHHHHHHHhHHHcCC------------CccEEEEecccc-----cccccccEEEeCCCccCCcchhHHHHHHHHHHHH
Confidence             6699999999999965            122222221111     12348999999999997432     347999999


Q ss_pred             HhhCCCcEEEEEEeeccchh
Q 028673          169 ALSGPKTTILVMFSLSMFSL  188 (205)
Q Consensus       169 ~~l~~~g~~~i~~~~r~~~~  188 (205)
                      ++|++||.++|+.. |....
T Consensus       254 ~~L~~gGeL~iVan-~~l~y  272 (300)
T COG2813         254 RHLKPGGELWIVAN-RHLPY  272 (300)
T ss_pred             HhhccCCEEEEEEc-CCCCh
Confidence            99999999999998 44433

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.75  E-value=4.7e-17  Score=136.64  Aligned_cols=148  Identities=14%  Similarity=0.144  Sum_probs=111.4

Q ss_pred             cEEEEEEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEE
Q 028673           12 SVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNV   89 (205)
Q Consensus        12 ~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g--~~v   89 (205)
                      ..+.+.+.+..+++...++.+.. ..+..++.+|.+++...           .+.+|||||||+|.+|+.+++++  ++|
T Consensus       188 ~~~~~~~~~~~~~~~~~~gVFs~-~~LD~GtrllL~~lp~~-----------~~~~VLDLGCGtGvi~i~la~~~P~~~V  255 (378)
T PRK15001        188 QTVSWKLEGTDWTIHNHANVFSR-TGLDIGARFFMQHLPEN-----------LEGEIVDLGCGNGVIGLTLLDKNPQAKV  255 (378)
T ss_pred             ceeEEEEcCceEEEEecCCccCC-CCcChHHHHHHHhCCcc-----------cCCeEEEEeccccHHHHHHHHhCCCCEE
Confidence            45667788899999988876554 46778888888888432           24589999999999999999884  579


Q ss_pred             EEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc-----ChHhH
Q 028673           90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LLEPL  163 (205)
Q Consensus        90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~l  163 (205)
                      +++|. +.+++.+++|++.|+..         ...++++...|....    ....+||+|++|++++...     ....+
T Consensus       256 ~~vD~S~~Av~~A~~N~~~n~~~---------~~~~v~~~~~D~l~~----~~~~~fDlIlsNPPfh~~~~~~~~ia~~l  322 (378)
T PRK15001        256 VFVDESPMAVASSRLNVETNMPE---------ALDRCEFMINNALSG----VEPFRFNAVLCNPPFHQQHALTDNVAWEM  322 (378)
T ss_pred             EEEECCHHHHHHHHHHHHHcCcc---------cCceEEEEEcccccc----CCCCCEEEEEECcCcccCccCCHHHHHHH
Confidence            99999 67999999999988531         112455554333221    1235899999998887542     34578


Q ss_pred             HHHHHHhhCCCcEEEEEEeec
Q 028673          164 LQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       164 l~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ++.+.++|+|||.++++....
T Consensus       323 ~~~a~~~LkpGG~L~iV~nr~  343 (378)
T PRK15001        323 FHHARRCLKINGELYIVANRH  343 (378)
T ss_pred             HHHHHHhcccCCEEEEEEecC
Confidence            889999999999999997543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.74  E-value=1.4e-17  Score=117.16  Aligned_cols=104  Identities=24%  Similarity=0.297  Sum_probs=83.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHH--hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||||||+|..++.+++  .+++|+++|+ +++++.+++++....           ..+++++...|+ ..  ...
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----------~~~~i~~~~~d~-~~--~~~   66 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-----------LSDRITFVQGDA-EF--DPD   66 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-----------TTTTEEEEESCC-HG--GTT
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-----------CCCCeEEEECcc-cc--Ccc
Confidence            468999999999999999999  6889999999 889999999996653           257899999777 11  122


Q ss_pred             CCCCccEEEEcc-cccC---CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          141 VAPPFDYIIGTD-VVYA---EHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       141 ~~~~fD~Ii~~d-~~y~---~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ...+||+|++.. +..+   .+....+++.+.++|+|||++++..
T Consensus        67 ~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   67 FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            345799999998 3321   2345688999999999999999875

...

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.71  E-value=1.8e-17  Score=129.97  Aligned_cols=111  Identities=19%  Similarity=0.312  Sum_probs=86.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEE-EEeecCCCCCccc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-VELDWGNEDHIKA  140 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~-~~~dw~~~~~~~~  140 (205)
                      +.|++|||+|||+|++|..+|+.|++|+++|. +++++.|++..+.+-.          ....+.. ..++-.+.+.   
T Consensus        88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~----------~~~~~~y~l~~~~~~~E~---  154 (282)
T KOG1270|consen   88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPV----------LEGAIAYRLEYEDTDVEG---  154 (282)
T ss_pred             cCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCch----------hccccceeeehhhcchhh---
Confidence            34688999999999999999999999999999 8899999988444321          1111111 1122222222   


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ..++||.|++++++.|..+++.+++.+.++|+|+|.++++...|..
T Consensus       155 ~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~  200 (282)
T KOG1270|consen  155 LTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTI  200 (282)
T ss_pred             cccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence            2346999999999999999999999999999999999999887765

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.70  E-value=3.4e-16  Score=116.27  Aligned_cols=107  Identities=22%  Similarity=0.279  Sum_probs=91.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHH-h--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~-~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+|||+|||+|..++.+++ .  +++++++|+ +++++.++.+++.++.            +++++...|+.+.... 
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------------~ni~~~~~d~~~l~~~-   69 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------------DNIEFIQGDIEDLPQE-   69 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------------TTEEEEESBTTCGCGC-
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------------cccceEEeehhccccc-
Confidence            578999999999999999994 4  568999999 8899999999988764            4799999888774321 


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      . ..+||+|+++.++++......+++.+.++|+++|.+++.....
T Consensus        70 ~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~  113 (152)
T PF13847_consen   70 L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNH  113 (152)
T ss_dssp             S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEH
T ss_pred             c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECCh
Confidence            1 2799999999999999999999999999999999999998873

...

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.70  E-value=9.7e-16  Score=116.88  Aligned_cols=116  Identities=20%  Similarity=0.188  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (205)
                      +.+|.+++...           ++++|||+|||+|.+++.++..+.+|+++|+ +++++.+++|++.++.          
T Consensus         8 ~~~l~~~l~~~-----------~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------   66 (179)
T TIGR00537         8 SLLLEANLREL-----------KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV----------   66 (179)
T ss_pred             HHHHHHHHHhc-----------CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence            45666776432           5678999999999999999999889999999 8899999999987743          


Q ss_pred             CCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC---------------------hHhHHHHHHHhhCCCcEEEE
Q 028673          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------LEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       121 ~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------------------~~~ll~~~~~~l~~~g~~~i  179 (205)
                         ++++...|+.+..     .++||+|+++++++....                     ++.+++.+.++|+|||.+++
T Consensus        67 ---~~~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~  138 (179)
T TIGR00537        67 ---GLDVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL  138 (179)
T ss_pred             ---ceEEEEccccccc-----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence               4666666654432     348999999988764321                     45688899999999999999


Q ss_pred             EEeeccc
Q 028673          180 MFSLSMF  186 (205)
Q Consensus       180 ~~~~r~~  186 (205)
                      .......
T Consensus       139 ~~~~~~~  145 (179)
T TIGR00537       139 IQSSLNG  145 (179)
T ss_pred             EEeccCC
Confidence            8765543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.69  E-value=1.6e-16  Score=131.12  Aligned_cols=110  Identities=15%  Similarity=0.230  Sum_probs=90.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++.+|||+|||+|.++..+++.|++|+++|. +++++.++.++..+..           ..++.+...+..+   +...
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----------~~~i~~~~~dae~---l~~~  195 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV-----------TSTIEYLCTTAEK---LADE  195 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-----------ccceeEEecCHHH---hhhc
Confidence            46789999999999999999999999999999 8899999988665421           2356666644333   2223


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      .++||+|++.++++|..+.+.+++.+.++|+|||.++++...|..
T Consensus       196 ~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~  240 (322)
T PLN02396        196 GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTM  240 (322)
T ss_pred             cCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCH
Confidence            568999999999999999999999999999999999999876653

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.67  E-value=1.3e-15  Score=118.03  Aligned_cols=101  Identities=20%  Similarity=0.276  Sum_probs=82.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+.+|||+|||+|..++.+++.|.+|+++|. +++++.++++++.++.            .++++...|+.+..    ..
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~~----~~   93 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL------------DNLHTAVVDLNNLT----FD   93 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CcceEEecChhhCC----cC
Confidence            5679999999999999999999999999999 7899999998877643            24666665554332    24


Q ss_pred             CCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEE
Q 028673          143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ++||+|+++.++++.  ...+.+++.+.++|+|||.+++.
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            579999999988764  35779999999999999996554

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.65  E-value=2.2e-15  Score=116.51  Aligned_cols=101  Identities=16%  Similarity=0.218  Sum_probs=79.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+.+|||+|||+|..++.++++|.+|+++|+ +++++.++++++.++.             .+.....+.....    ..
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~~----~~   92 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL-------------PLRTDAYDINAAA----LN   92 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC-------------CceeEeccchhcc----cc
Confidence            4579999999999999999999999999999 7899999988877643             2444444433221    23


Q ss_pred             CCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEE
Q 028673          143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ++||+|+++.++++.  +..+.+++.+.++|+|||.+++..
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            579999999988764  456789999999999999966553

Part of a tellurite-reducing operon tehA and tehB

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.65  E-value=9.9e-16  Score=123.16  Aligned_cols=109  Identities=23%  Similarity=0.284  Sum_probs=90.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..++.+++.|.+|+++|+ +++++.++++++..+.           ..++++...+..+...  ...
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~-----------~~~v~~~~~d~~~l~~--~~~  110 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV-----------SDNMQFIHCAAQDIAQ--HLE  110 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccceEEEEcCHHHHhh--hcC
Confidence            4579999999999999999999999999999 8899999999887643           3467777766554321  124


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ++||+|++..++++......+++.+.++|+|||.+++.+..+.
T Consensus       111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~  153 (255)
T PRK11036        111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN  153 (255)
T ss_pred             CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence            6899999999999988889999999999999999998865543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.65  E-value=4.3e-15  Score=121.46  Aligned_cols=138  Identities=21%  Similarity=0.302  Sum_probs=99.3

Q ss_pred             eEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchH
Q 028673           21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVL   98 (205)
Q Consensus        21 ~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l   98 (205)
                      ....+.-+|+ ..+|+..++.+.+..+++...         ..++++|||+|||+|.+++.+++.|+ +|+++|+ +.++
T Consensus       126 ~~~~i~ldpg-~aFgtG~h~tt~l~l~~l~~~---------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al  195 (288)
T TIGR00406       126 DALIIMLDPG-LAFGTGTHPTTSLCLEWLEDL---------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV  195 (288)
T ss_pred             CcEEEEECCC-CcccCCCCHHHHHHHHHHHhh---------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH
Confidence            3455666663 334444557777777777553         33678999999999999999999887 6999999 7899


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673           99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus        99 ~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                      +.+++|+..|+.           ..++.+...+   ..  .....+||+|+++-.   .+.+..++..+.++|+|||.++
T Consensus       196 ~~a~~n~~~n~~-----------~~~~~~~~~~---~~--~~~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li  256 (288)
T TIGR00406       196 ESARKNAELNQV-----------SDRLQVKLIY---LE--QPIEGKADVIVANIL---AEVIKELYPQFSRLVKPGGWLI  256 (288)
T ss_pred             HHHHHHHHHcCC-----------CcceEEEecc---cc--cccCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcEEE
Confidence            999999998864           2334444322   11  112468999999732   3445688899999999999999


Q ss_pred             EEEeeccch
Q 028673          179 VMFSLSMFS  187 (205)
Q Consensus       179 i~~~~r~~~  187 (205)
                      ++...+...
T Consensus       257 ~sgi~~~~~  265 (288)
T TIGR00406       257 LSGILETQA  265 (288)
T ss_pred             EEeCcHhHH
Confidence            987655443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.64  E-value=5.2e-15  Score=123.37  Aligned_cols=134  Identities=13%  Similarity=0.110  Sum_probs=98.7

Q ss_pred             EEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchH
Q 028673           22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVL   98 (205)
Q Consensus        22 ~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l   98 (205)
                      .+++...++.+.. ..+..++..|.+.+...           ...+|||||||+|.+++.+++++.  +|+++|+ +.++
T Consensus       166 ~l~i~~~pgvFs~-~~lD~gt~lLl~~l~~~-----------~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al  233 (342)
T PRK09489        166 GLTVKTLPGVFSR-DGLDVGSQLLLSTLTPH-----------TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL  233 (342)
T ss_pred             CEEEEeCCCCCCC-CCCCHHHHHHHHhcccc-----------CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            4667777765443 34556677777776432           234799999999999999998854  7999999 7799


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC-----cChHhHHHHHHHhhCC
Q 028673           99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----HLLEPLLQTIFALSGP  173 (205)
Q Consensus        99 ~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~ll~~~~~~l~~  173 (205)
                      +.++.|++.|+.             ..++...|...     ...++||+|+++++++..     ...+.+++.+.++|+|
T Consensus       234 ~~A~~nl~~n~l-------------~~~~~~~D~~~-----~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp  295 (342)
T PRK09489        234 ESSRATLAANGL-------------EGEVFASNVFS-----DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS  295 (342)
T ss_pred             HHHHHHHHHcCC-------------CCEEEEccccc-----ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc
Confidence            999999999854             12333322221     124689999999987652     3457899999999999


Q ss_pred             CcEEEEEEeecc
Q 028673          174 KTTILVMFSLSM  185 (205)
Q Consensus       174 ~g~~~i~~~~r~  185 (205)
                      ||.++++.....
T Consensus       296 gG~L~iVan~~l  307 (342)
T PRK09489        296 GGELRIVANAFL  307 (342)
T ss_pred             CCEEEEEEeCCC
Confidence            999999987443

>PRK14967 putative methyltransferase; Provisional

Probab=99.64  E-value=8.5e-15  Score=115.52  Aligned_cols=133  Identities=19%  Similarity=0.239  Sum_probs=96.2

Q ss_pred             EEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHH
Q 028673           23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL  100 (205)
Q Consensus        23 ~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~  100 (205)
                      +.+.+.++.+....    .+..+++++...        ...++.+|||+|||+|.+++.+++.++ +|+++|+ +++++.
T Consensus         7 ~~~~~~~g~~~p~~----ds~~l~~~l~~~--------~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~   74 (223)
T PRK14967          7 DALLRAPGVYRPQE----DTQLLADALAAE--------GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS   74 (223)
T ss_pred             ceeecCCCCcCCCC----cHHHHHHHHHhc--------ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence            34455554333332    367788887653        233567999999999999999998876 7999999 789999


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC---------------------
Q 028673          101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------  159 (205)
Q Consensus       101 ~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------------------  159 (205)
                      +++|+..++.             ++.+...|+.+..    ...+||+|+++.+++....                     
T Consensus        75 a~~n~~~~~~-------------~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (223)
T PRK14967         75 ARLNALLAGV-------------DVDVRRGDWARAV----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAV  137 (223)
T ss_pred             HHHHHHHhCC-------------eeEEEECchhhhc----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHH
Confidence            9999988743             3566666654421    2468999999877553221                     


Q ss_pred             hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          160 LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       160 ~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ++.+++.+.++|++||.+++.....
T Consensus       138 ~~~~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967        138 LDRLCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEecc
Confidence            4567888899999999999876544

>PLN02244 tocopherol O-methyltransferase

Probab=99.63  E-value=8.8e-15  Score=122.25  Aligned_cols=106  Identities=15%  Similarity=0.089  Sum_probs=89.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .++.+|||+|||+|..+..+++. +++|+++|+ +.+++.++++++.++.           .+++++...|..+.   +.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----------~~~v~~~~~D~~~~---~~  182 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----------SDKVSFQVADALNQ---PF  182 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcCcccC---CC
Confidence            46789999999999999999986 789999999 7899999998887643           34678877665543   23


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .+++||+|++..++++..+...+++.+.++|+|||.++++..
T Consensus       183 ~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        183 EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            457899999999999988899999999999999999998753

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.63  E-value=1.6e-15  Score=102.92  Aligned_cols=93  Identities=18%  Similarity=0.264  Sum_probs=76.5

Q ss_pred             EEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCcc
Q 028673           69 IELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD  146 (205)
Q Consensus        69 LdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD  146 (205)
                      ||+|||+|..+..+++. +.+|+++|. +++++.++++....               .+.+...+..+.   +..+++||
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---------------~~~~~~~d~~~l---~~~~~sfD   62 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---------------GVSFRQGDAEDL---PFPDNSFD   62 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---------------TEEEEESBTTSS---SS-TT-EE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---------------CchheeehHHhC---cccccccc
Confidence            89999999999999999 788999999 78899888876544               344666554444   44578999


Q ss_pred             EEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       147 ~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      +|+++.++++.+....+++.+.+.|||||.+++
T Consensus        63 ~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   63 VVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            999999999999999999999999999999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.61  E-value=1.6e-14  Score=114.46  Aligned_cols=108  Identities=17%  Similarity=0.186  Sum_probs=81.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+|||+|||||.++..+++. +  .+|+++|+ ++|++.+++.+...+.            .++++...|..+   ++
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------------~~i~~v~~da~~---lp  111 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------------QNIEFVQGDAED---LP  111 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE-BTTB-----
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------------CCeeEEEcCHHH---hc
Confidence            6789999999999999999876 3  47999999 8899999999887643            368888855444   44


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ..+++||.|.++-.+.+..+.+..++.+.+.|||||++++..-.+-.
T Consensus       112 ~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~  158 (233)
T PF01209_consen  112 FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR  158 (233)
T ss_dssp             S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred             CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence            45689999999988888889999999999999999998887665544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.60  E-value=2.5e-14  Score=116.96  Aligned_cols=101  Identities=22%  Similarity=0.338  Sum_probs=82.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++++|||+|||+|..++.+++.|.+|+++|. +.+++.++++++.++.             ++++...|.....    ..
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-------------~v~~~~~D~~~~~----~~  182 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-------------NIRTGLYDINSAS----IQ  182 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEechhccc----cc
Confidence            4569999999999999999999999999999 7899999999887743             4566555544322    25


Q ss_pred             CCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEE
Q 028673          143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ++||+|+++.++++.  +....+++.+.++|+|||.+++..
T Consensus       183 ~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        183 EEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             CCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            689999999988764  467789999999999999977654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.60  E-value=2.6e-14  Score=114.61  Aligned_cols=130  Identities=23%  Similarity=0.306  Sum_probs=94.3

Q ss_pred             EEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHH
Q 028673           22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLP   99 (205)
Q Consensus        22 ~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~   99 (205)
                      ...+..+|+ -.+|...++.+..+.+++...         ..++++|||+|||+|.+++.+++.|+. |+++|+ +.+++
T Consensus        87 ~~~i~i~p~-~afgtg~h~tt~~~l~~l~~~---------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~  156 (250)
T PRK00517         87 EINIELDPG-MAFGTGTHPTTRLCLEALEKL---------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVE  156 (250)
T ss_pred             eEEEEECCC-CccCCCCCHHHHHHHHHHHhh---------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHH
Confidence            444555553 233444467778888887653         336789999999999999999998875 999999 78999


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          100 LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       100 ~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      .+++|++.|+.           ...+.+..   +        +.+||+|+++-   ..+.+..+++.+.++|+|||.+++
T Consensus       157 ~A~~n~~~~~~-----------~~~~~~~~---~--------~~~fD~Vvani---~~~~~~~l~~~~~~~LkpgG~lil  211 (250)
T PRK00517        157 AARENAELNGV-----------ELNVYLPQ---G--------DLKADVIVANI---LANPLLELAPDLARLLKPGGRLIL  211 (250)
T ss_pred             HHHHHHHHcCC-----------CceEEEcc---C--------CCCcCEEEEcC---cHHHHHHHHHHHHHhcCCCcEEEE
Confidence            99999998853           11222211   1        12799999872   234466888999999999999999


Q ss_pred             EEeeccc
Q 028673          180 MFSLSMF  186 (205)
Q Consensus       180 ~~~~r~~  186 (205)
                      +......
T Consensus       212 sgi~~~~  218 (250)
T PRK00517        212 SGILEEQ  218 (250)
T ss_pred             EECcHhh
Confidence            8665443

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.60  E-value=1.6e-14  Score=110.33  Aligned_cols=99  Identities=19%  Similarity=0.234  Sum_probs=80.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++++|||+|||+|.+++.++..+  ++|+++|. +++++.+++|++.++.            +++++...+..+..    
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------------~~i~~i~~d~~~~~----  105 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------------NNVEIVNGRAEDFQ----  105 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------------CCeEEEecchhhcc----
Confidence            57899999999999999998764  47999999 7899999999988753            35788887765532    


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..++||+|++..    ...++.+++.+.++|+|||.+++...
T Consensus       106 ~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138       106 HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence            246899999864    34677889999999999999988754

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.60  E-value=3.1e-14  Score=109.18  Aligned_cols=100  Identities=19%  Similarity=0.260  Sum_probs=82.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|..++.+++.  +++|+++|. +++++.+++|++.++.            +++.+...+..+..   .
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------------~~i~~~~~d~~~~~---~  109 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------------KNVTVVHGRAEEFG---Q  109 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------------CCEEEEeccHhhCC---C
Confidence            3789999999999999999864  568999999 7899999999998854            34788776655432   2


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                       .++||+|+++.    ...++.+++.+.++|+|||.+++....
T Consensus       110 -~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        110 -EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             -CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence             56899999974    356789999999999999999988654

>TIGR00452 methyltransferase, putative

Probab=99.60  E-value=1.9e-14  Score=118.45  Aligned_cols=107  Identities=17%  Similarity=0.156  Sum_probs=80.9

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ...++++|||+|||+|..+..++..|+ .|+++|. +.++..++.......           ...++.+...+..+..  
T Consensus       118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~-----------~~~~v~~~~~~ie~lp--  184 (314)
T TIGR00452       118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD-----------NDKRAILEPLGIEQLH--  184 (314)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc-----------cCCCeEEEECCHHHCC--
Confidence            356789999999999999999998887 4999999 667655432211110           0134566665544432  


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                       . ..+||+|+++.++||......+++.+++.|+|||.+++...
T Consensus       185 -~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       185 -E-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             -C-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence             2 34899999999999999999999999999999999998743

Known examples to date are restricted to the proteobacteria.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.59  E-value=2.9e-14  Score=118.19  Aligned_cols=106  Identities=19%  Similarity=0.191  Sum_probs=81.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++++|||+|||+|..+..++..|+. |+++|. +.++..++..  ....         ....++.+...+..+..   
T Consensus       120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~--~~~~---------~~~~~i~~~~~d~e~lp---  185 (322)
T PRK15068        120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAV--RKLL---------GNDQRAHLLPLGIEQLP---  185 (322)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHH--HHhc---------CCCCCeEEEeCCHHHCC---
Confidence            457899999999999999999998875 999998 5555433222  1111         01235777776655442   


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      . ..+||+|++..++||..+...+++.+++.|+|||.+++...
T Consensus       186 ~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~  227 (322)
T PRK15068        186 A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL  227 (322)
T ss_pred             C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence            2 56899999999999999999999999999999999998753

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.58  E-value=2.5e-14  Score=109.40  Aligned_cols=103  Identities=24%  Similarity=0.306  Sum_probs=80.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..+..++||||||.|.-++.+|++|..|+++|. +.+++.+++-++..++             .++....|..+..    
T Consensus        28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l-------------~i~~~~~Dl~~~~----   90 (192)
T PF03848_consen   28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL-------------DIRTRVADLNDFD----   90 (192)
T ss_dssp             TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT--------------TEEEEE-BGCCBS----
T ss_pred             hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc-------------eeEEEEecchhcc----
Confidence            446789999999999999999999999999999 6789888887776654             3777777766543    


Q ss_pred             CCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          141 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .+..||+|++.-++++  .+..+.+++.+.+.++|||.+++..
T Consensus        91 ~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   91 FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             -TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            2468999998766654  6677889999999999999988754

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.58  E-value=6.6e-14  Score=112.47  Aligned_cols=107  Identities=17%  Similarity=0.246  Sum_probs=92.5

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           60 PSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ...-+|.+|||+|||-|.+++.+|+. |.+|+++++ +++.+.+++.++.-+.           ..++++...||.+.. 
T Consensus        68 l~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----------~~~v~v~l~d~rd~~-  135 (283)
T COG2230          68 LGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----------EDNVEVRLQDYRDFE-  135 (283)
T ss_pred             cCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----------CcccEEEeccccccc-
Confidence            35668999999999999999999987 799999999 7799999998888754           468999999999875 


Q ss_pred             cccCCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          138 IKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                           ++||-|++-+++.+..  ..+.+++.+.++|+|||.+++-.-.
T Consensus       136 -----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~  178 (283)
T COG2230         136 -----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT  178 (283)
T ss_pred             -----cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence                 3599999999998854  5999999999999999997766543

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.58  E-value=5.4e-14  Score=113.44  Aligned_cols=109  Identities=19%  Similarity=0.139  Sum_probs=85.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+|||+|||||..+..+++. +  .+|+++|. ++|++.++++......         ....++++...+..+.   +
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---------~~~~~i~~~~~d~~~l---p  140 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---------SCYKNIEWIEGDATDL---P  140 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---------ccCCCeEEEEcccccC---C
Confidence            5789999999999999988875 4  47999999 7899999876542110         0123577777554433   3


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..+++||+|+++.++++..+...+++.+.+.|+|||.+++....+
T Consensus       141 ~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        141 FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            345689999999999998899999999999999999999886544

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.57  E-value=5.7e-14  Score=113.43  Aligned_cols=106  Identities=16%  Similarity=0.158  Sum_probs=83.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++.+|||+|||+|..+..+++. +++|+++|+ +++++.++++....              .++.+...|..+.   +
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~i~~~~~D~~~~---~  112 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--------------NKIEFEANDILKK---D  112 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--------------CceEEEECCcccC---C
Confidence            346789999999999999888764 779999999 78999888765432              3567777555432   2


Q ss_pred             cCCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          140 AVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..+.+||+|++.+++++..  ....+++.+.++|+|||.++++....
T Consensus       113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            2356899999999887754  77899999999999999999987643

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.57  E-value=5.3e-14  Score=113.91  Aligned_cols=121  Identities=17%  Similarity=0.191  Sum_probs=90.7

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (205)
                      .+-....+++...       ....+|.+|||||||.|-+++.+++. |++|+++.+ ++..+.+++.++..+.       
T Consensus        45 ~AQ~~k~~~~~~~-------~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-------  110 (273)
T PF02353_consen   45 EAQERKLDLLCEK-------LGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-------  110 (273)
T ss_dssp             HHHHHHHHHHHTT-------TT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-------
T ss_pred             HHHHHHHHHHHHH-------hCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-------
Confidence            3344555566554       34567899999999999999999988 999999999 7788999988887754       


Q ss_pred             CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                          .+++++...|+.+..      .+||.|++-+++.+.  ..++.+++.+.++|+|||.+++-.-.+
T Consensus       111 ----~~~v~v~~~D~~~~~------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~  169 (273)
T PF02353_consen  111 ----EDRVEVRLQDYRDLP------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH  169 (273)
T ss_dssp             ----SSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred             ----CCceEEEEeeccccC------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence                567888888876553      399999999999886  678999999999999999998765443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.57  E-value=3.7e-14  Score=111.87  Aligned_cols=106  Identities=15%  Similarity=0.221  Sum_probs=89.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      +|.+|||+|||||-.++.+++..  ++|+++|+ +.|++.+++.+..-+.            .++++..   ++.+.++.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------------~~i~fv~---~dAe~LPf  115 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------------QNVEFVV---GDAENLPF  115 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------------cceEEEE---echhhCCC
Confidence            68999999999999999999885  57999999 7899999998776432            1267777   44445556


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .+.+||+|.++-.+.+..+++..|+.+.+.|||||++++..-.+
T Consensus       116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            78899999999999999999999999999999999887776544

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.3e-13  Score=103.64  Aligned_cols=105  Identities=29%  Similarity=0.373  Sum_probs=78.5

Q ss_pred             EcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-c
Q 028673           18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-I   95 (205)
Q Consensus        18 ~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~   95 (205)
                      +...++.++|+++.....      +.+|.. ...        ..+.+|++|+|||||||.+|+.++.+|++ |+++|+ +
T Consensus        14 f~~p~~~LEQY~Tp~~~A------a~il~~-a~~--------~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~   78 (198)
T COG2263          14 FPNPKLGLEQYRTPAPLA------AYILWV-AYL--------RGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDP   78 (198)
T ss_pred             CCCCCccceecCCChHHH------HHHHHH-HHH--------cCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCH
Confidence            344567788888643332      111111 111        46789999999999999999999999986 999999 8


Q ss_pred             chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC
Q 028673           96 EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA  156 (205)
Q Consensus        96 ~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~  156 (205)
                      ++++.+++|++.+             ..++.+...|..+.      ..++|.++.|+++-.
T Consensus        79 ~a~ei~r~N~~~l-------------~g~v~f~~~dv~~~------~~~~dtvimNPPFG~  120 (198)
T COG2263          79 EALEIARANAEEL-------------LGDVEFVVADVSDF------RGKFDTVIMNPPFGS  120 (198)
T ss_pred             HHHHHHHHHHHhh-------------CCceEEEEcchhhc------CCccceEEECCCCcc
Confidence            9999999999885             35688888666554      468899999888744

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.56  E-value=9.3e-15  Score=103.51  Aligned_cols=106  Identities=21%  Similarity=0.248  Sum_probs=84.3

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           65 GKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      |.+|||+|||+|..++.+++.+ .+++++|+ +.+++.++.|+..++.           .+++++...|+.+... ....
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----------~~~~~~~~~D~~~~~~-~~~~   68 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----------DDRVEVIVGDARDLPE-PLPD   68 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----------TTTEEEEESHHHHHHH-TCTT
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----------CceEEEEECchhhchh-hccC
Confidence            4689999999999999999999 78999999 8899999999998854           4568888877755431 1235


Q ss_pred             CCccEEEEcccccCCc--------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          143 PPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ++||+|++++++....        ....+++.+.++|+|||.+++..+
T Consensus        69 ~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   69 GKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             T-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            7999999998887532        346789999999999999998765

...

>PRK14968 putative methyltransferase; Provisional

Probab=99.56  E-value=9.3e-14  Score=106.24  Aligned_cols=120  Identities=22%  Similarity=0.266  Sum_probs=90.4

Q ss_pred             cccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCC
Q 028673           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (205)
Q Consensus        39 W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (205)
                      ++.+.+|++++...           ++++|||+|||+|..++.++..+.+|+++|+ +++++.+++|+..++..      
T Consensus         9 ~~~~~~l~~~~~~~-----------~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------   71 (188)
T PRK14968          9 AEDSFLLAENAVDK-----------KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR------   71 (188)
T ss_pred             chhHHHHHHhhhcc-----------CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC------
Confidence            45567777777532           6789999999999999999999889999999 78999999999887531      


Q ss_pred             CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc---------------------ChHhHHHHHHHhhCCCcE
Q 028673          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------------------LLEPLLQTIFALSGPKTT  176 (205)
Q Consensus       118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------------~~~~ll~~~~~~l~~~g~  176 (205)
                          ...+.+...|+.+..    ...+||+|+++++++...                     .+..+++.+.++|+|+|.
T Consensus        72 ----~~~~~~~~~d~~~~~----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~  143 (188)
T PRK14968         72 ----NNGVEVIRSDLFEPF----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGR  143 (188)
T ss_pred             ----CcceEEEeccccccc----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence                011666666654432    233799999988765421                     245688999999999999


Q ss_pred             EEEEEee
Q 028673          177 ILVMFSL  183 (205)
Q Consensus       177 ~~i~~~~  183 (205)
                      +++....
T Consensus       144 ~~~~~~~  150 (188)
T PRK14968        144 ILLLQSS  150 (188)
T ss_pred             EEEEEcc
Confidence            8887653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.55  E-value=1.2e-13  Score=120.31  Aligned_cols=107  Identities=19%  Similarity=0.235  Sum_probs=88.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..++.+++. +++|+++|+ +++++.+++|+...             ..++.+...|+.+..   ..
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------------~~~v~~~~~d~~~~~---~~  329 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------------KCSVEFEVADCTKKT---YP  329 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------------CCceEEEEcCcccCC---CC
Confidence            5679999999999999988875 778999999 78999998876422             235778787765432   23


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      +++||+|++.+++++....+.+++.+.+.|+|||.+++....+..
T Consensus       330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~  374 (475)
T PLN02336        330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSP  374 (475)
T ss_pred             CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence            468999999999999999999999999999999999999765543

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.55  E-value=5.6e-14  Score=112.67  Aligned_cols=101  Identities=16%  Similarity=0.091  Sum_probs=81.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+.+|||+|||+|..+..+++.+.+|+++|+ +++++.++++...                 ..+...|....   +..+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~-----------------~~~~~~d~~~~---~~~~  101 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAA-----------------DHYLAGDIESL---PLAT  101 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCC-----------------CCEEEcCcccC---cCCC
Confidence            4678999999999999999988999999999 7898888775321                 23444444332   2335


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .+||+|+++.++++..+...+++.+.+.|+|||.++++....
T Consensus       102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258        102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            689999999999888899999999999999999999986543

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.55  E-value=1.1e-13  Score=109.46  Aligned_cols=104  Identities=14%  Similarity=0.141  Sum_probs=84.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++++|||+|||+|..+..+++. +  .+|+++|+ +++++.++++++.++.            +++++...|..+..   
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~---  109 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------------HNVELVHGNAMELP---  109 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------------CceEEEEechhcCC---
Confidence            5789999999999999999875 3  47999999 7899999999876532            35777776554432   


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ....+||+|+++.++.+......+++.+.++|+|||.+++...
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       110 FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            2356899999998888888889999999999999999988764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.54  E-value=1.7e-13  Score=111.12  Aligned_cols=105  Identities=21%  Similarity=0.194  Sum_probs=85.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-CC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .++.+|||+|||+|..++.+++. +.  +|+++|. +++++.+++|+..++.            .++++...++.+.   
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------------~~v~~~~~d~~~l---  140 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------------TNVEFRLGEIEAL---  140 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------------CCEEEEEcchhhC---
Confidence            36789999999999988877764 44  6999999 8899999999877643            3567777655433   


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +..+++||+|+++.++++....+.+++.+.++|+|||+++++..
T Consensus       141 ~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        141 PVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             CCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            22346899999998888888888999999999999999999754

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.54  E-value=1.5e-13  Score=110.57  Aligned_cols=99  Identities=17%  Similarity=0.166  Sum_probs=79.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .++.+|||+|||+|..+..+++.  +.+|+++|+ +.+++.++++..                 ++.+...|..+..   
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------------~~~~~~~d~~~~~---   89 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------------DCQFVEADIASWQ---   89 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------------CCeEEECchhccC---
Confidence            35789999999999999999876  468999999 789988887531                 3455554433221   


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                       ...+||+|+++.++++......+++.+.+.|+|||.+++..+
T Consensus        90 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         90 -PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             -CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence             235899999999998888889999999999999999998754

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.54  E-value=2.8e-15  Score=103.27  Aligned_cols=95  Identities=16%  Similarity=0.202  Sum_probs=61.0

Q ss_pred             EEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc-CCCC
Q 028673           69 IELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPP  144 (205)
Q Consensus        69 LdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~-~~~~  144 (205)
                      ||+|||+|..+..+...  +.+++++|+ +.|++.+++.+.....              .......+...+.... ..++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~   66 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN--------------DNFERLRFDVLDLFDYDPPES   66 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----------------EEEEE--SSS---CCC---
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--------------cceeEEEeecCChhhcccccc
Confidence            79999999999999888  667999999 7899888877776532              1222222232222111 1259


Q ss_pred             ccEEEEcccccCCcChHhHHHHHHHhhCCCcEE
Q 028673          145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI  177 (205)
Q Consensus       145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~  177 (205)
                      ||+|+++.++++.+..+.+++.+.++|+|||.+
T Consensus        67 fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   67 FDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             cceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.53  E-value=1.3e-13  Score=110.77  Aligned_cols=97  Identities=21%  Similarity=0.195  Sum_probs=78.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .++.+|||+|||+|.++..+++.  +.+|+++|. +.|++.++++                   ++++...|..+.   .
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d~~~~---~   85 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------------GVDARTGDVRDW---K   85 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------------CCcEEEcChhhC---C
Confidence            35789999999999999999987  678999999 7788887652                   245555444322   1


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                       ..++||+|+++.++++......+++.+.+.|+|||.+++..+
T Consensus        86 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         86 -PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             -CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence             246899999999999988899999999999999999998754

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.52  E-value=3e-14  Score=106.01  Aligned_cols=99  Identities=23%  Similarity=0.209  Sum_probs=79.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++++|||+|||+|..+..+++.|.+|+++|. +.+++.      .+                ......+-.   ....
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~----------------~~~~~~~~~---~~~~   74 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN----------------VVFDNFDAQ---DPPF   74 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT----------------SEEEEEECH---THHC
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh----------------hhhhhhhhh---hhhc
Confidence            346789999999999999999999999999999 667666      11                122221111   1122


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..++||+|++++++++..+...+++.+.++|+|||.++++.+.+.
T Consensus        75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            357999999999999999999999999999999999999999875

...

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=2.6e-13  Score=110.30  Aligned_cols=99  Identities=22%  Similarity=0.321  Sum_probs=78.6

Q ss_pred             eEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      +|||||||||.+++.+++.+.  +|+++|+ +++++.|++|+..|+.            .++.+...||-..-     .+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------------~~~~~~~~dlf~~~-----~~  175 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------------VRVLVVQSDLFEPL-----RG  175 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------------ccEEEEeeeccccc-----CC
Confidence            799999999999999999876  7999999 8899999999999964            24444444666542     44


Q ss_pred             CccEEEEcccccCCc-------------------------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          144 PFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +||+|++|+++-..+                         .+..++..+...|+|+|.+++...
T Consensus       176 ~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g  239 (280)
T COG2890         176 KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG  239 (280)
T ss_pred             ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence            999999999875543                         134567777888999988887766

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.51  E-value=1.8e-13  Score=107.84  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=85.6

Q ss_pred             CeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++|||+|||+|..+..+++..  .+|+++|+ +++++.+++++...+.           .+++.+...|.....    ..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----------~~~i~~~~~d~~~~~----~~   65 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----------QGRIRIFYRDSAKDP----FP   65 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC----CC
Confidence            479999999999999998763  57999999 7899999999877643           356788776664331    13


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ++||+|++..++++....+.+++.+.++|+|||.+++....
T Consensus        66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            58999999999999888999999999999999999988653

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.51  E-value=1.6e-13  Score=109.89  Aligned_cols=106  Identities=16%  Similarity=0.247  Sum_probs=83.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh----CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .+.+|||+|||+|..++.+++.    +.+|+++|. ++|++.+++++..++.           ..++++...+..+..  
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----------~~~v~~~~~d~~~~~--  122 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDIA--  122 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCChhhCC--
Confidence            5679999999999999888762    568999999 8899999999987643           246777775554332  


Q ss_pred             ccCCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          139 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                         .+.+|+|+++-++++.+  ....+++.+.+.|+|||.++++...+.
T Consensus       123 ---~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~  168 (247)
T PRK15451        123 ---IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF  168 (247)
T ss_pred             ---CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence               24699999988877643  346899999999999999999976543

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.50  E-value=6.3e-14  Score=114.39  Aligned_cols=106  Identities=17%  Similarity=0.177  Sum_probs=86.2

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ...++++.|||+|||||++|+.+|+.|++ |+++|.+++.+.+.+.+..|+.           .+.+++......+.   
T Consensus        56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~-----------~~ii~vi~gkvEdi---  121 (346)
T KOG1499|consen   56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGL-----------EDVITVIKGKVEDI---  121 (346)
T ss_pred             hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCc-----------cceEEEeecceEEE---
Confidence            45789999999999999999999999996 9999999988999999999965           45688888554444   


Q ss_pred             ccCCCCccEEEEccc---ccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          139 KAVAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~---~y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      ..+.++.|+|++-..   +++++.++.++-.--+.|+|||.++=
T Consensus       122 ~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  122 ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence            222579999987654   44467777888888888999998763

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.50  E-value=1.4e-12  Score=92.87  Aligned_cols=101  Identities=25%  Similarity=0.266  Sum_probs=77.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|..++.+++..  .+|+++|+ +.+++.+++|++.++.            .++++...+.....  ..
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~~~--~~   84 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------------SNIVIVEGDAPEAL--ED   84 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------------CceEEEeccccccC--hh
Confidence            46799999999999999999873  57999999 7899999999887743            24566554433211  11


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ..++||+|++...   ......+++.+.+.|+|||.+++..
T Consensus        85 ~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        85 SLPEPDRVFIGGS---GGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             hcCCCCEEEECCc---chhHHHHHHHHHHHcCCCCEEEEEe
Confidence            2358999998643   2455789999999999999998864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.50  E-value=4.5e-13  Score=106.18  Aligned_cols=109  Identities=18%  Similarity=0.173  Sum_probs=88.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|..+..+++.+++|+++|. +++++.++.++..++.             ++++...++.+...  .
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~~~--~  110 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL-------------KIDYRQTTAEELAA--E  110 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC-------------ceEEEecCHHHhhh--h
Confidence            346789999999999999999999999999999 7788999888776532             35565555543321  1


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..++||+|+++.++.+......+++.+.++|+|||.++++...+.
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~  155 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRN  155 (233)
T ss_pred             cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCC
Confidence            246899999999999988999999999999999999999876543

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.49  E-value=9.6e-14  Score=105.45  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=77.2

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      .++||+|||.|.++..+|.++.+++++|+ +.+++.+++.+...              +++++...+..+..    +.++
T Consensus        45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~--------------~~V~~~~~dvp~~~----P~~~  106 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL--------------PHVEWIQADVPEFW----PEGR  106 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---------------SSEEEEES-TTT-------SS-
T ss_pred             ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC--------------CCeEEEECcCCCCC----CCCC
Confidence            47999999999999999999988999999 78999999876532              46888887665442    4679


Q ss_pred             ccEEEEcccccCCcC---hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          145 FDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       145 fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ||+|+.+.++|+...   +..++..+...|+|||.++++..
T Consensus       107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            999999999999765   44677888888999999999886

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.49  E-value=1e-12  Score=111.60  Aligned_cols=119  Identities=21%  Similarity=0.245  Sum_probs=88.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~  140 (205)
                      ++++|||+|||||.+++.++..|+ +|+++|. +.+++.+++|++.|+..          ..++++...|..+.- ....
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----------~~~v~~i~~D~~~~l~~~~~  289 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----------LSKAEFVRDDVFKLLRTYRD  289 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CCcEEEEEccHHHHHHHHHh
Confidence            578999999999999998887777 6999999 78999999999999641          135777776654321 1111


Q ss_pred             CCCCccEEEEcccccCCc---------ChHhHHHHHHHhhCCCcEEEEEEeeccchhHHHH
Q 028673          141 VAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFC  192 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~---------~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~~~~  192 (205)
                      ...+||+|++.++.|...         .+..+++...++|+|||.++.+......+.+.|.
T Consensus       290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~  350 (396)
T PRK15128        290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQ  350 (396)
T ss_pred             cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHH
Confidence            245899999988776543         3556666778899999999987765555555443

>TIGR00740 methyltransferase, putative

Probab=99.49  E-value=5.9e-13  Score=106.04  Aligned_cols=107  Identities=13%  Similarity=0.090  Sum_probs=84.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh----CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++.+|||+|||+|..+..+++.    +.+|+++|+ ++|++.+++++...+.           ..++.+...|+.+..  
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--  119 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHVE--  119 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhCC--
Confidence            5679999999999999988874    568999999 8899999998876421           235778776665442  


Q ss_pred             ccCCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          139 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                         .+.+|+|+++.++++..  ....+++.+.+.|+|||.++++...+..
T Consensus       120 ---~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~  166 (239)
T TIGR00740       120 ---IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE  166 (239)
T ss_pred             ---CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCC
Confidence               23689999988877643  4568999999999999999999876543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.49  E-value=9.3e-13  Score=101.10  Aligned_cols=99  Identities=21%  Similarity=0.250  Sum_probs=77.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+.+|||+|||+|.+++.+++.+  .+|+++|. +++++.+++|++.++.            .++++...+...     .
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------------~~i~~~~~d~~~-----~   93 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------------GNIDIIPGEAPI-----E   93 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------------CCeEEEecCchh-----h
Confidence            67799999999999999999875  47999999 7899999999988753            246666544311     1


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ...+||+|+++..   ...+..+++.+.+.|+|||.+++...
T Consensus        94 ~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         94 LPGKADAIFIGGS---GGNLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             cCcCCCEEEECCC---ccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence            2357999998743   24577899999999999999988754

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.49  E-value=3.4e-13  Score=103.70  Aligned_cols=113  Identities=19%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++++||||+||+|.+|+.++++|+ +|+++|. +.+++.+++|++.|+.           .+++++...|..+.-...
T Consensus        47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----------~~~~~~~~~D~~~~l~~~  115 (189)
T TIGR00095        47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----------GEQAEVVRNSALRALKFL  115 (189)
T ss_pred             hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------cccEEEEehhHHHHHHHh
Confidence            35788999999999999999999998 5999999 7899999999999854           235677775553221101


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHH--hhCCCcEEEEEEeecc
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILVMFSLSM  185 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~i~~~~r~  185 (205)
                      ....+++.|+..|+.|.....+.+++.+..  +++++|.+++.+..+.
T Consensus       116 ~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~~~  163 (189)
T TIGR00095       116 AKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDREP  163 (189)
T ss_pred             hccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecCCC
Confidence            112234445555888887888888887755  5788888777766543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.49  E-value=4.7e-13  Score=109.19  Aligned_cols=104  Identities=16%  Similarity=0.191  Sum_probs=81.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +.+|||+|||+|.+++.+++.  +.+|+++|+ +++++.+++|++.++.           .+++.+...|+.+..    .
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----------~~~i~~~~~D~~~~~----~  186 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIQSDLFAAL----P  186 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhcc----C
Confidence            468999999999999999987  458999999 7899999999998854           346788887764321    2


Q ss_pred             CCCccEEEEcccccCCc-------------------------ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          142 APPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ..+||+|+++++.....                         ....+++.+.++|+|||.+++....
T Consensus       187 ~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~  253 (284)
T TIGR03533       187 GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN  253 (284)
T ss_pred             CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            34799999997754321                         1246678888899999999987764

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.48  E-value=6e-13  Score=107.31  Aligned_cols=106  Identities=21%  Similarity=0.215  Sum_probs=77.7

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .+++|++|||+|||.|..+..++..|++ |+++|- +..  .++-.+-+....         ....+....+...+.   
T Consensus       112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf--~~QF~~i~~~lg---------~~~~~~~lplgvE~L---  177 (315)
T PF08003_consen  112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF--YLQFEAIKHFLG---------QDPPVFELPLGVEDL---  177 (315)
T ss_pred             CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH--HHHHHHHHHHhC---------CCccEEEcCcchhhc---
Confidence            3679999999999999999999999997 999997 432  222222222110         011233333333333   


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      +. .+.||+|++..|+||..++-..++.++..|++||.+++-.
T Consensus       178 p~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  178 PN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             cc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence            33 5689999999999999999999999999999999998764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.48  E-value=1.5e-12  Score=110.01  Aligned_cols=119  Identities=17%  Similarity=0.180  Sum_probs=87.9

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCC
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (205)
                      .+..+.+.+....         .++.+|||+|||+|.+++.+++.  +++|+++|+ +++++.+++|++.++        
T Consensus       237 eTE~LVe~aL~~l---------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--------  299 (423)
T PRK14966        237 ETEHLVEAVLARL---------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--------  299 (423)
T ss_pred             cHHHHHHHhhhcc---------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------
Confidence            3567777776531         14568999999999999998875  567999999 889999999998874        


Q ss_pred             CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc-------------------------ChHhHHHHHHHhhC
Q 028673          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSG  172 (205)
Q Consensus       118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~  172 (205)
                           .++.+...|+.+.. .. ...+||+|++|++.....                         .+..+++.+.++|+
T Consensus       300 -----~rV~fi~gDl~e~~-l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk  372 (423)
T PRK14966        300 -----ARVEFAHGSWFDTD-MP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA  372 (423)
T ss_pred             -----CcEEEEEcchhccc-cc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC
Confidence                 25788887775432 11 134799999998754321                         13366777778899


Q ss_pred             CCcEEEEEEee
Q 028673          173 PKTTILVMFSL  183 (205)
Q Consensus       173 ~~g~~~i~~~~  183 (205)
                      |||.+++....
T Consensus       373 pgG~lilEiG~  383 (423)
T PRK14966        373 EGGFLLLEHGF  383 (423)
T ss_pred             CCcEEEEEECc
Confidence            99998876654

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.48  E-value=2.7e-13  Score=104.85  Aligned_cols=107  Identities=15%  Similarity=0.103  Sum_probs=83.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+.+|||||||+|.+++.++.++ ++|+++|. +++++.+++|++.++.            .++.+...|+.+..  ...
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------------~~v~~~~~D~~~~l--~~~  118 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------------GNARVVNTNALSFL--AQP  118 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEEchHHHHH--hhc
Confidence            56799999999999999765555 57999999 8899999999998853            35777776664321  112


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHh--hCCCcEEEEEEeecc
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILVMFSLSM  185 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~--l~~~g~~~i~~~~r~  185 (205)
                      ..+||+|+++++ |.....+.+++.+...  ++|++.+|+.+..+.
T Consensus       119 ~~~fDlV~~DPP-y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~  163 (199)
T PRK10909        119 GTPHNVVFVDPP-FRKGLLEETINLLEDNGWLADEALIYVESEVEN  163 (199)
T ss_pred             CCCceEEEECCC-CCCChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence            346999999777 6777788888888774  789999999987653

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.48  E-value=9.5e-13  Score=103.27  Aligned_cols=100  Identities=15%  Similarity=0.140  Sum_probs=76.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC---EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++.+|||+|||+|..+..+++...   +|+++|. +++++.+++|++.++.            +++++...|..+.. 
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------------~~v~~~~~d~~~~~-  141 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------------DNVIVIVGDGTQGW-  141 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------------CCeEEEECCcccCC-
Confidence            44678999999999999999998743   4999999 8899999999988753            45777776554321 


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                        ....+||+|+++...      ..+.+.+.+.|+|||++++...
T Consensus       142 --~~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       142 --EPLAPYDRIYVTAAG------PKIPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             --cccCCCCEEEEcCCc------ccccHHHHHhcCcCcEEEEEEc
Confidence              123589999987543      3345667888999999888754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.47  E-value=1.4e-12  Score=104.63  Aligned_cols=122  Identities=16%  Similarity=0.107  Sum_probs=85.9

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCC
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (205)
                      .+..|.+.+....      .....+.+|||+|||+|.+++.+++.  +.+|+++|+ +++++.+++|++.|+        
T Consensus        69 ~Te~Lv~~~l~~~------~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--------  134 (251)
T TIGR03704        69 RTEFLVDEAAALA------RPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--------  134 (251)
T ss_pred             cHHHHHHHHHHhh------cccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------
Confidence            3556666665431      01112458999999999999999876  458999999 889999999998873        


Q ss_pred             CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc--------------------------ChHhHHHHHHHhh
Q 028673          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALS  171 (205)
Q Consensus       118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~ll~~~~~~l  171 (205)
                             +++...|+.+.... ...++||+|++++++....                          .+..+++.+.++|
T Consensus       135 -------~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L  206 (251)
T TIGR03704       135 -------GTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL  206 (251)
T ss_pred             -------CEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence                   25566666442211 1135799999998765321                          1346777888999


Q ss_pred             CCCcEEEEEEeec
Q 028673          172 GPKTTILVMFSLS  184 (205)
Q Consensus       172 ~~~g~~~i~~~~r  184 (205)
                      +|||.+++.+...
T Consensus       207 ~~gG~l~l~~~~~  219 (251)
T TIGR03704       207 APGGHLLVETSER  219 (251)
T ss_pred             CCCCEEEEEECcc
Confidence            9999999887643

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.46  E-value=2.4e-12  Score=100.31  Aligned_cols=100  Identities=19%  Similarity=0.187  Sum_probs=75.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .++.+|||+|||+|..+..+++.   +.+|+++|. +++++.+++|++.++.           ..++++...|..+..  
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----------~~~v~~~~~d~~~~~--  137 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----------WGVVEVYHGDGKRGL--  137 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEECCcccCC--
Confidence            35679999999999999888875   358999999 8899999999987753           235677775544321  


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                       ....+||.|+++..+.      .+.+.+.+.|+|||++++...
T Consensus       138 -~~~~~fD~Ii~~~~~~------~~~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        138 -EKHAPFDAIIVTAAAS------TIPSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             -ccCCCccEEEEccCcc------hhhHHHHHhcCcCcEEEEEEc
Confidence             1245899999986543      334567788999999988654

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.46  E-value=5.1e-13  Score=103.86  Aligned_cols=111  Identities=14%  Similarity=-0.026  Sum_probs=82.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeec-CCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw-~~~~~~~  139 (205)
                      .+.+|||+|||+|..+..+++..  .+|+++|. +++++.++++++.++.            .++.+...++ ..... .
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~l~~-~  106 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------------TNLRLLCGDAVEVLLD-M  106 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------------CCEEEEecCHHHHHHH-H
Confidence            46789999999999999998763  46999999 8899999999987743            4577888666 32211 0


Q ss_pred             cCCCCccEEEEcccccCC---c-----ChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          140 AVAPPFDYIIGTDVVYAE---H-----LLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~---~-----~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      ....+||.|+++.+....   +     ..+.+++.+.++|+|||.++++...+...
T Consensus       107 ~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~  162 (202)
T PRK00121        107 FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYA  162 (202)
T ss_pred             cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHH
Confidence            224689999987433211   1     25789999999999999999987654443

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.45  E-value=2.3e-12  Score=100.96  Aligned_cols=114  Identities=16%  Similarity=0.192  Sum_probs=81.6

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCC
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (205)
                      ++..+..++...       ....++.+|||+|||+|..+..+++. +  .+|+++|. +++++.+++|++.++.      
T Consensus        60 ~~p~~~~~~~~~-------l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------  126 (212)
T PRK13942         60 SAIHMVAIMCEL-------LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------  126 (212)
T ss_pred             CcHHHHHHHHHH-------cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence            345555555554       23446789999999999999988876 3  57999999 8899999999987753      


Q ss_pred             CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                            .++.+...|-...   .....+||.|++....      ..+.+.+.+.|+|||++++...
T Consensus       127 ------~~v~~~~gd~~~~---~~~~~~fD~I~~~~~~------~~~~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        127 ------DNVEVIVGDGTLG---YEENAPYDRIYVTAAG------PDIPKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             ------CCeEEEECCcccC---CCcCCCcCEEEECCCc------ccchHHHHHhhCCCcEEEEEEc
Confidence                  3577777553322   1224689999986433      2334567778999999888653

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.44  E-value=2.5e-12  Score=105.05  Aligned_cols=104  Identities=16%  Similarity=0.223  Sum_probs=81.3

Q ss_pred             CeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+|||+|||+|.+++.+++..  .+|+++|+ +++++.+++|++.++.           ..++.+...||.+..    ..
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----------~~~v~~~~~d~~~~~----~~  180 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----------EHRVEFIQSNLFEPL----AG  180 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhccC----cC
Confidence            689999999999999999874  57999999 7899999999998853           235888887776432    12


Q ss_pred             CCccEEEEcccccCCc-------------------------ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          143 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .+||+|+++++.....                         .+..+++.+.++|+|||.+++.....
T Consensus       181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~  247 (284)
T TIGR00536       181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW  247 (284)
T ss_pred             CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence            3799999987654321                         24467788888999999998877643

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.44  E-value=1.4e-12  Score=107.52  Aligned_cols=103  Identities=17%  Similarity=0.197  Sum_probs=80.5

Q ss_pred             CeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+|||+|||+|.+++.+++.  +.+|+++|+ +++++.+++|++.++.           .+++.+...|+.+..    ..
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----------~~~i~~~~~D~~~~l----~~  199 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIESDLFAAL----PG  199 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCcEEEEECchhhhC----CC
Confidence            68999999999999999987  458999999 8899999999998853           346888887764321    13


Q ss_pred             CCccEEEEcccccCCc-------------------------ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .+||+|+++++.....                         ....+++.+.++|+|||.+++....
T Consensus       200 ~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~  265 (307)
T PRK11805        200 RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN  265 (307)
T ss_pred             CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            4799999987653211                         1346788888899999999987654

>PRK08317 hypothetical protein; Provisional

Probab=99.44  E-value=4.6e-12  Score=100.09  Aligned_cols=105  Identities=20%  Similarity=0.154  Sum_probs=83.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++.+|||+|||+|..+..++...   .+|+++|. +.+++.++++....             ..++.+...+..... 
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------------~~~~~~~~~d~~~~~-   82 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------------GPNVEFVRGDADGLP-   82 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------------CCceEEEecccccCC-
Confidence            3467899999999999999888763   47999999 77888888773222             235677665554332 


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                        ....+||+|++..++.+......+++.+.++|+|||.++++..
T Consensus        83 --~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         83 --FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             --CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence              2356899999999999888999999999999999999988764

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.44  E-value=8.4e-13  Score=111.06  Aligned_cols=157  Identities=20%  Similarity=0.109  Sum_probs=111.9

Q ss_pred             EEEEcCeEEEEEeCCC-CccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEE
Q 028673           15 NLEVLGHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITT   92 (205)
Q Consensus        15 ~~~~~~~~~~i~q~~~-~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~   92 (205)
                      .+.+.++...+..+.. +-.||..+|  -...-+++..          ..+|++||++.|-||..|+.+|..|| +||.+
T Consensus       179 ~~~i~E~g~kf~v~~~~g~kTGfFlD--qR~~R~~l~~----------~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~V  246 (393)
T COG1092         179 EVVIEENGVKFLVDLVDGLKTGFFLD--QRDNRRALGE----------LAAGKRVLNLFSYTGGFSVHAALGGASEVTSV  246 (393)
T ss_pred             cEEEEeCCeEEEEecCCcccceeeHH--hHHHHHHHhh----------hccCCeEEEecccCcHHHHHHHhcCCCceEEE
Confidence            3445555566665554 446776555  3333333422          33599999999999999999999999 69999


Q ss_pred             cC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-CcccCCCCccEEEEcccccCCc---------ChH
Q 028673           93 DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAEH---------LLE  161 (205)
Q Consensus        93 D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~~~~~fD~Ii~~d~~y~~~---------~~~  161 (205)
                      |. ..+++.+++|++.|+..          ..++.++..|.-+.- .......+||+|+.-++-|...         .+.
T Consensus       247 D~S~~al~~a~~N~~LNg~~----------~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~  316 (393)
T COG1092         247 DLSKRALEWARENAELNGLD----------GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYK  316 (393)
T ss_pred             eccHHHHHHHHHHHHhcCCC----------ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHH
Confidence            99 67999999999999862          233455553322111 1122345999999988887732         356


Q ss_pred             hHHHHHHHhhCCCcEEEEEEeeccchhHHHHH
Q 028673          162 PLLQTIFALSGPKTTILVMFSLSMFSLTFFCW  193 (205)
Q Consensus       162 ~ll~~~~~~l~~~g~~~i~~~~r~~~~~~~~~  193 (205)
                      .++..+.++|+|||+++++...+..+.+.|.-
T Consensus       317 ~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~  348 (393)
T COG1092         317 DLNDLALRLLAPGGTLVTSSCSRHFSSDLFLE  348 (393)
T ss_pred             HHHHHHHHHcCCCCEEEEEecCCccCHHHHHH
Confidence            78888899999999999999999988876543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.43  E-value=1.2e-12  Score=108.81  Aligned_cols=101  Identities=14%  Similarity=0.103  Sum_probs=80.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+.+|||+|||+|..++.+++.  +.+|+++|. +++++.++++...+               ++.+...|..+.   ..
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~---------------~i~~i~gD~e~l---p~  174 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------------ECKIIEGDAEDL---PF  174 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc---------------CCeEEeccHHhC---CC
Confidence            4679999999999999888875  457999999 78999888875432               356666554432   22


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..++||+|+++.++++....+.+++.+.+.|+|||.+++..+
T Consensus       175 ~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            356899999999998888889999999999999999988654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.43  E-value=4e-12  Score=115.36  Aligned_cols=114  Identities=23%  Similarity=0.170  Sum_probs=89.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++++|||||||||.+|+.+++.|++ |+++|+ +.+++.+++|++.|+..          .+++++...|..+..  ...
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----------~~~v~~i~~D~~~~l--~~~  605 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----------GRQHRLIQADCLAWL--KEA  605 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----------ccceEEEEccHHHHH--HHc
Confidence            5789999999999999999999885 999999 78999999999999641          136788886654321  112


Q ss_pred             CCCccEEEEcccccCCc-----------ChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          142 APPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~-----------~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      ..+||+|++.++.+...           .+..++..+.++|+|||.++++...+.....
T Consensus       606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~  664 (702)
T PRK11783        606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD  664 (702)
T ss_pred             CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh
Confidence            45899999987765421           2457888889999999999998776665543

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.43  E-value=1.6e-12  Score=102.81  Aligned_cols=100  Identities=16%  Similarity=0.088  Sum_probs=80.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+++|||+|||+|..+..+++.+.  +|+++|. +++++.++.+...                ++.+...|..+..   .
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~----------------~~~~~~~d~~~~~---~   94 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE----------------NVQFICGDAEKLP---L   94 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC----------------CCeEEecchhhCC---C
Confidence            457899999999999999998864  4899999 7787777664331                3566665554432   2


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..++||+|+++.++++......+++.+.++|+|||.++++..
T Consensus        95 ~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072        95 EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            356899999999999988899999999999999999998764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.43  E-value=5.2e-12  Score=99.99  Aligned_cols=105  Identities=15%  Similarity=0.157  Sum_probs=85.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+|||+|||+|..+..++..+   .+|+++|. +.+++.+++++..++.           ..++.+...+..+..   
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---  116 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----------SGNVEFVQGDAEALP---  116 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----------ccCeEEEecccccCC---
Confidence            56899999999999999999876   67999999 7899999998866422           245677776665432   


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ....+||+|+++.++++......+++.+.++|+|||.+++...
T Consensus       117 ~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        117 FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            2346899999998888888999999999999999999988754

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.42  E-value=3.4e-12  Score=100.45  Aligned_cols=109  Identities=20%  Similarity=0.185  Sum_probs=87.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ..+.+|||+|||+|..+..+++.+++++++|. +.+++.++.++..++.            .++.+...+..+...  ..
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~~--~~  109 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL------------LKIEYRCTSVEDLAE--KG  109 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEeCCHHHhhc--CC
Confidence            45789999999999999999988889999999 7799999988876632            135555544433321  11


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..+||+|+++.++++......+++.+.+.|++||.++++...+.
T Consensus       110 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~  153 (224)
T TIGR01983       110 AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRT  153 (224)
T ss_pred             CCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence            36899999999999999999999999999999999998875443

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.42  E-value=2.6e-12  Score=108.84  Aligned_cols=100  Identities=17%  Similarity=0.170  Sum_probs=79.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++.+|||+|||+|.+++.+++. |++|+++|+ +++++.++++++..               .+++...|+.+.    
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l---------------~v~~~~~D~~~l----  225 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL---------------PVEIRLQDYRDL----  225 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC---------------eEEEEECchhhc----
Confidence            346789999999999999989875 789999999 78999998876321               255555554332    


Q ss_pred             cCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                        .++||.|++..++++.  ...+.+++.+.++|+|||.+++...
T Consensus       226 --~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        226 --NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             --CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence              3589999999988875  3467899999999999999998754

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.42  E-value=4.9e-12  Score=101.08  Aligned_cols=121  Identities=19%  Similarity=0.227  Sum_probs=89.7

Q ss_pred             cccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccC
Q 028673           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (205)
Q Consensus        39 W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (205)
                      ++.+..+.+++....        ...+.+|||+|||+|..++.+++.  +.+|+++|. +.+++.++.|+..++.     
T Consensus        70 ~~~~~~l~~~~l~~~--------~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----  136 (251)
T TIGR03534        70 RPDTEELVEAALERL--------KKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-----  136 (251)
T ss_pred             CCChHHHHHHHHHhc--------ccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----
Confidence            345666666665531        123568999999999999999987  457999999 8899999999988753     


Q ss_pred             CCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC--------------------------hHhHHHHHHH
Q 028673          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTIFA  169 (205)
Q Consensus       116 ~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------------~~~ll~~~~~  169 (205)
                             .++.+...++.+..    ...+||+|++++++.....                          +..+++.+.+
T Consensus       137 -------~~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~  205 (251)
T TIGR03534       137 -------DNVTFLQSDWFEPL----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR  205 (251)
T ss_pred             -------CeEEEEECchhccC----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH
Confidence                   35777777665421    2468999999887654211                          2357788889


Q ss_pred             hhCCCcEEEEEEee
Q 028673          170 LSGPKTTILVMFSL  183 (205)
Q Consensus       170 ~l~~~g~~~i~~~~  183 (205)
                      +|+|||.+++....
T Consensus       206 ~L~~gG~~~~~~~~  219 (251)
T TIGR03534       206 LLKPGGWLLLEIGY  219 (251)
T ss_pred             hcccCCEEEEEECc
Confidence            99999999987654

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.41  E-value=4.6e-12  Score=98.14  Aligned_cols=104  Identities=20%  Similarity=0.294  Sum_probs=79.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++.+|||+|||+|.+++.+++. +  .+|+++|. +++++.+++|++.++.           .+++.+...+..+.  
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----------~~~v~~~~~d~~~~--  104 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----------LNNIVLIKGEAPEI--  104 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CCCeEEEEechhhh--
Confidence            447789999999999999999875 3  47999999 8899999999998852           24567766554332  


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .....++||.|+++.   ....+..+++.+.++|+|||.+++..
T Consensus       105 l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377        105 LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence            112235899999853   33567889999999999999998743

>PRK04266 fibrillarin; Provisional

Probab=99.41  E-value=4e-12  Score=100.31  Aligned_cols=106  Identities=16%  Similarity=0.067  Sum_probs=73.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..++.+|||+|||+|..++.+++..  .+|+++|. ++|++.+.++++..              .++.+...|..+....
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------------~nv~~i~~D~~~~~~~  135 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------------KNIIPILADARKPERY  135 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------------CCcEEEECCCCCcchh
Confidence            3467899999999999999999873  47999999 78998887776532              2456665454332111


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .....+||+|++.-  -.+.....+++.+.+.|+|||.++++.+.
T Consensus       136 ~~l~~~~D~i~~d~--~~p~~~~~~L~~~~r~LKpGG~lvI~v~~  178 (226)
T PRK04266        136 AHVVEKVDVIYQDV--AQPNQAEIAIDNAEFFLKDGGYLLLAIKA  178 (226)
T ss_pred             hhccccCCEEEECC--CChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            11234699998631  11222345689999999999999996443

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.41  E-value=4.4e-13  Score=92.69  Aligned_cols=92  Identities=25%  Similarity=0.304  Sum_probs=71.4

Q ss_pred             EEEeCCCccHHHHHHHHhC-----CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           68 VIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        68 VLdlGcGtGl~sl~~a~~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      |||+|||+|.....+++..     .+++++|+ ++|++.++++.+..+.             ++++...|..+.   ...
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-------------~~~~~~~D~~~l---~~~   64 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-------------KVRFVQADARDL---PFS   64 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-------------TSEEEESCTTCH---HHH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-------------ceEEEECCHhHC---ccc
Confidence            7999999999999999874     67999999 8899999998876432             578888776553   334


Q ss_pred             CCCccEEEEccc-ccC--CcChHhHHHHHHHhhCCCc
Q 028673          142 APPFDYIIGTDV-VYA--EHLLEPLLQTIFALSGPKT  175 (205)
Q Consensus       142 ~~~fD~Ii~~d~-~y~--~~~~~~ll~~~~~~l~~~g  175 (205)
                      .++||+|+++.. +.+  .+....+++.+.++++|||
T Consensus        65 ~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   65 DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            669999999544 544  3467799999999999987

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.41  E-value=2.5e-12  Score=101.11  Aligned_cols=99  Identities=21%  Similarity=0.291  Sum_probs=77.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++++|||+|||+|..+..++..+.+|+++|+ +++++.+++++..++.           ..++.+...++.+..     
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~~~-----  117 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV-----------AGNVEFEVNDLLSLC-----  117 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChhhCC-----
Confidence            46789999999999999999999889999999 8899999998876632           235777775554432     


Q ss_pred             CCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEE
Q 028673          142 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~  178 (205)
                       ++||+|++++++++.  .....+++.+.+++++++.+.
T Consensus       118 -~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~  155 (219)
T TIGR02021       118 -GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT  155 (219)
T ss_pred             -CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence             689999999998664  345677888888887654433

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.40  E-value=8.7e-12  Score=101.11  Aligned_cols=120  Identities=19%  Similarity=0.267  Sum_probs=87.7

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (205)
                      +.+..+.+++...       ....++.+|||+|||+|.+++.++...  .+|+++|+ +.+++.+++|+..+        
T Consensus        91 ~~te~l~~~~~~~-------~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~--------  155 (275)
T PRK09328         91 PETEELVEWALEA-------LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG--------  155 (275)
T ss_pred             CCcHHHHHHHHHh-------ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC--------
Confidence            3455666666532       123356789999999999999999875  57999999 78999999998822        


Q ss_pred             CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc--------------------------ChHhHHHHHHHh
Q 028673          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFAL  170 (205)
Q Consensus       117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~ll~~~~~~  170 (205)
                          ...++.+...|+.+..    ...+||+|++++++....                          .+..+++.+.++
T Consensus       156 ----~~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~  227 (275)
T PRK09328        156 ----LGARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY  227 (275)
T ss_pred             ----CCCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh
Confidence                1246788887774432    146899999987754321                          134677777899


Q ss_pred             hCCCcEEEEEEe
Q 028673          171 SGPKTTILVMFS  182 (205)
Q Consensus       171 l~~~g~~~i~~~  182 (205)
                      |+|||.+++...
T Consensus       228 Lk~gG~l~~e~g  239 (275)
T PRK09328        228 LKPGGWLLLEIG  239 (275)
T ss_pred             cccCCEEEEEEC
Confidence            999999998664

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.40  E-value=9.6e-12  Score=97.31  Aligned_cols=100  Identities=18%  Similarity=0.164  Sum_probs=76.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++|++.++.            .++++...|..+..   .
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~---~  140 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL------------HNVSVRHGDGWKGW---P  140 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC------------CceEEEECCcccCC---C
Confidence            346789999999999999988888778999999 8899999999987743            34677665543221   1


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ...+||+|++...+      ..+.+.+.+.|+|||.+++...
T Consensus       141 ~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        141 AYAPFDRILVTAAA------PEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             cCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEEEEc
Confidence            23689999987533      3345667889999999988776

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.40  E-value=6.6e-12  Score=103.55  Aligned_cols=103  Identities=15%  Similarity=0.183  Sum_probs=83.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..++.+++..  .+++++|.+++++.+++|++..+.           .+++++...|..+..     
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl-----------~~rv~~~~~d~~~~~-----  212 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES-----  212 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCc-----------cceEEEEecCccCCC-----
Confidence            45799999999999999999885  479999998899999999988753           357888886654321     


Q ss_pred             CCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .+.+|+|+.+.++|+...  ...+++.+.+.|+|||++++...
T Consensus       213 ~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       213 YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            134799999988886543  45799999999999999999865

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.39  E-value=6.8e-12  Score=98.19  Aligned_cols=127  Identities=17%  Similarity=0.080  Sum_probs=83.6

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccC---C
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---N  116 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---~  116 (205)
                      ....|.+++...        ...++.+|||+|||.|.-++.+|.+|.+|+++|+ +.+++.+..   .++......   +
T Consensus        19 p~~~l~~~~~~l--------~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~   87 (213)
T TIGR03840        19 VNPLLVKHWPAL--------GLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGE   87 (213)
T ss_pred             CCHHHHHHHHhh--------CCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceecccc
Confidence            456777777542        1125679999999999999999999999999999 778886532   222110000   0


Q ss_pred             CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEE
Q 028673          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .+.....++++...|..+...  ...++||.|+...++.+  .+..+..++.+.++|+|||.+++.
T Consensus        88 ~~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840        88 FTRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             ceeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            000113457777766655431  11357999998776654  344567899999999999974444

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.39  E-value=8.6e-12  Score=103.90  Aligned_cols=108  Identities=18%  Similarity=0.122  Sum_probs=84.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++.+|||.|||||.+.+.++..+++|+++|+ +.|++.++.|++.++.            .++++...|..+.   +..
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~------------~~i~~~~~D~~~l---~~~  245 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGI------------EDFFVKRGDATKL---PLS  245 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCC------------CCCeEEecchhcC---Ccc
Confidence            35779999999999999999999999999999 7899999999988754            2356666554433   222


Q ss_pred             CCCccEEEEcccccCC---------cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          142 APPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..+||+|++++++-..         .....+++.+.+.|+|||.+++..+.+.
T Consensus       246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~  298 (329)
T TIGR01177       246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI  298 (329)
T ss_pred             cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence            4689999998765321         1257889999999999999998887653

This family is found exclusively in the Archaea.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.37  E-value=6e-12  Score=110.20  Aligned_cols=105  Identities=20%  Similarity=0.298  Sum_probs=79.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|.+++.+++.  +++|+++|+ +++++.+++|+..++.           .+++.+...|+.+..    
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----------~~~v~~~~~D~~~~~----  202 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----------TDRIQIIHSNWFENI----  202 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----------ccceeeeecchhhhC----
Confidence            3468999999999999988865  568999999 7899999999988753           346778777764321    


Q ss_pred             CCCCccEEEEcccccCCcC--------------------------hHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~--------------------------~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...+||+|++++++.....                          +..+++.+.++|+|||.+++....
T Consensus       203 ~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~  271 (506)
T PRK01544        203 EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF  271 (506)
T ss_pred             cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence            1358999999887654211                          234667778899999999987653

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.37  E-value=3.9e-12  Score=98.29  Aligned_cols=110  Identities=10%  Similarity=-0.071  Sum_probs=81.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ...+|||||||+|..++.+++..  .+|+++|+ +++++.+++++..++.            .++.+...|..+......
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------------~ni~~i~~d~~~~~~~~~   83 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------------KNLHVLCGDANELLDKFF   83 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------------CCEEEEccCHHHHHHhhC
Confidence            45689999999999999999874  46999999 7899999999887643            368888866654321112


Q ss_pred             CCCCccEEEEcccccC-Cc-------ChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYA-EH-------LLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~-~~-------~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ....+|.|+.+-+.-+ ..       ..+.+++.+.+.|+|||.+++....+.
T Consensus        84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~  136 (194)
T TIGR00091        84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP  136 (194)
T ss_pred             CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            2357999988743221 11       126799999999999999999876554

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=9.7e-12  Score=95.67  Aligned_cols=101  Identities=21%  Similarity=0.257  Sum_probs=80.0

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ...++.+|||+|||+|..+-.+|+...+|+.+|. ++..+.|++|++..+.            .++.+...|-...   .
T Consensus        69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~------------~nV~v~~gDG~~G---~  133 (209)
T COG2518          69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY------------ENVTVRHGDGSKG---W  133 (209)
T ss_pred             CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC------------CceEEEECCcccC---C
Confidence            4557899999999999999999999889999999 8899999999998864            4577777543333   2


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ....+||.|+.+      ...+.+-+.+.+.|++||++++-..
T Consensus       134 ~~~aPyD~I~Vt------aaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         134 PEEAPYDRIIVT------AAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCCcCEEEEe------eccCCCCHHHHHhcccCCEEEEEEc
Confidence            334699999887      3445555666778999999887765

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.35  E-value=1.3e-11  Score=101.88  Aligned_cols=105  Identities=17%  Similarity=0.216  Sum_probs=73.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++.+|||+|||+|.+++.+++.|.+|+++|+ ++|++.+++++.......       ....++.+...|+.+.      
T Consensus       143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~-------~~~~~~~f~~~Dl~~l------  209 (315)
T PLN02585        143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAAL-------PPEVLPKFEANDLESL------  209 (315)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccccc-------ccccceEEEEcchhhc------
Confidence            46789999999999999999999999999999 789999999887542100       0012456666554321      


Q ss_pred             CCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +++||+|++.++++|...  ...+++.+.++ .+ |.++++..
T Consensus       210 ~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~-g~liIs~~  250 (315)
T PLN02585        210 SGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AE-KRLIISFA  250 (315)
T ss_pred             CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cC-CEEEEEeC
Confidence            468999999999876432  33566666654 44 44556554

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.35  E-value=1.9e-11  Score=92.21  Aligned_cols=103  Identities=24%  Similarity=0.280  Sum_probs=82.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..+|.+++|+|||||.+++.++..+.  +|+++|. +++++.+++|+++.+.            +++++...+   ..+.
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------------~n~~vv~g~---Ap~~   96 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------------DNLEVVEGD---APEA   96 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------------CcEEEEecc---chHh
Confidence            34688999999999999999996654  6999999 8899999999999864            678888743   3222


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .....+||.|+...-    ..++.+++.+...|+|||++++..-.
T Consensus        97 L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          97 LPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             hcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            212237999998743    68899999999999999999887653

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.35  E-value=1.1e-12  Score=100.38  Aligned_cols=111  Identities=26%  Similarity=0.316  Sum_probs=81.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Ccc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~  139 (205)
                      ++|.+||||.||||.+|+.+..+|++ |+++|. +.++..+++|++.-+.           .+++.+...|....- ...
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----------~~~~~v~~~d~~~~l~~~~  109 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----------EDKIRVIKGDAFKFLLKLA  109 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------------GGGEEEEESSHHHHHHHHH
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----------CcceeeeccCHHHHHHhhc
Confidence            58999999999999999999999985 999999 7899999999987653           235666664432221 111


Q ss_pred             cCCCCccEEEEcccccCCcC-hHhHHHHHH--HhhCCCcEEEEEEeecc
Q 028673          140 AVAPPFDYIIGTDVVYAEHL-LEPLLQTIF--ALSGPKTTILVMFSLSM  185 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~-~~~ll~~~~--~~l~~~g~~~i~~~~r~  185 (205)
                      ....+||+|++ |+-|.... .+.+++.+.  .+|+++|.+++.+..+.
T Consensus       110 ~~~~~fDiIfl-DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~  157 (183)
T PF03602_consen  110 KKGEKFDIIFL-DPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKE  157 (183)
T ss_dssp             HCTS-EEEEEE---STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTS
T ss_pred             ccCCCceEEEE-CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCC
Confidence            13579999988 67777776 488999887  57899999999988774

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.35  E-value=3.3e-11  Score=93.19  Aligned_cols=104  Identities=20%  Similarity=0.278  Sum_probs=77.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|..++.+++.  +.+|+++|. +++++.+++|++.++.            .++++...|..+.  ...
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------------~~v~~~~~d~~~~--~~~  105 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------------KNVEVIEGSAPEC--LAQ  105 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CCeEEEECchHHH--Hhh
Confidence            5789999999999999999875  467999999 8899999999988753            3567766554321  111


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ....+|.++..    ....++.+++.+.++|+|||.+++......
T Consensus       106 ~~~~~d~v~~~----~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  146 (196)
T PRK07402        106 LAPAPDRVCIE----GGRPIKEILQAVWQYLKPGGRLVATASSLE  146 (196)
T ss_pred             CCCCCCEEEEE----CCcCHHHHHHHHHHhcCCCeEEEEEeecHH
Confidence            12346766542    234568999999999999999998876543

>PRK05785 hypothetical protein; Provisional

Probab=99.34  E-value=1.8e-11  Score=96.76  Aligned_cols=88  Identities=16%  Similarity=0.238  Sum_probs=70.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+.+|||+|||||..+..+++. +.+|+++|. ++|++.++..   .                 .....+..   .++..
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---~-----------------~~~~~d~~---~lp~~  107 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---D-----------------DKVVGSFE---ALPFR  107 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---c-----------------ceEEechh---hCCCC
Confidence            3679999999999999999988 678999999 7899987753   1                 11232222   23344


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCC
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK  174 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~  174 (205)
                      +++||+|+++..+++..+.+.+++.+.+.|+|.
T Consensus       108 d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        108 DKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             CCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence            679999999999999899999999999999994

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.34  E-value=3.5e-11  Score=104.06  Aligned_cols=125  Identities=15%  Similarity=0.143  Sum_probs=90.2

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (205)
                      +..|.+.+....       ...++.+|||+|||+|.+++.+++.+.+|+++|. ++|++.+++|++.|+.          
T Consensus       282 ~e~l~~~vl~~l-------~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~----------  344 (443)
T PRK13168        282 NQKMVARALEWL-------DPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL----------  344 (443)
T ss_pred             HHHHHHHHHHHh-------cCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC----------
Confidence            445555555431       2335679999999999999999999989999999 7899999999998864          


Q ss_pred             CCCceEEEEeecCCCCC-cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          121 LLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       121 ~~~~i~~~~~dw~~~~~-~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                        .++++...|+.+... ......+||+|+++++ |..  ....++.+.+ ++|++.+|++........+
T Consensus       345 --~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP-r~g--~~~~~~~l~~-~~~~~ivyvSCnp~tlaRD  408 (443)
T PRK13168        345 --DNVTFYHANLEEDFTDQPWALGGFDKVLLDPP-RAG--AAEVMQALAK-LGPKRIVYVSCNPATLARD  408 (443)
T ss_pred             --CceEEEEeChHHhhhhhhhhcCCCCEEEECcC-CcC--hHHHHHHHHh-cCCCeEEEEEeChHHhhcc
Confidence              358888887754321 1112357999998655 432  3456666666 5889999999875555443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.34  E-value=9.9e-12  Score=108.34  Aligned_cols=103  Identities=21%  Similarity=0.159  Sum_probs=79.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++++|||+|||+|..+..+++.+.+|+++|+ +++++.++.   .+.           ...++.+...+..... .+...
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~-----------~~~~i~~~~~d~~~~~-~~~~~  101 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---ING-----------HYKNVKFMCADVTSPD-LNISD  101 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhc-----------cCCceEEEEecccccc-cCCCC
Confidence            5679999999999999999999889999999 778765443   221           1246777776664322 22235


Q ss_pred             CCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEE
Q 028673          143 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .+||+|+++.++++...  ...+++.+.+.|+|||.+++..
T Consensus       102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            68999999999987654  5789999999999999998864

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.32  E-value=5.4e-11  Score=93.18  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=82.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC---EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+|||+|||+|..+..+++.+.   +++++|. +.+++.++++...              ..++.+...+..+..   
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--------------~~~i~~~~~d~~~~~---  101 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--------------PLNIEFIQADAEALP---  101 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--------------CCCceEEecchhcCC---
Confidence            678999999999999999887754   7999999 7788888877651              134667665554432   


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...++||+|+++..+.+......+++.+.++|+|||.+++....
T Consensus       102 ~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       102 FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            22458999999988888888999999999999999999987653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.32  E-value=7.5e-12  Score=101.59  Aligned_cols=106  Identities=23%  Similarity=0.321  Sum_probs=83.9

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..++.++.|||+|||+|+++..+++.|++ |++++.++|.+.+++-++.|..           .++|.++.....+.+  
T Consensus       173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~-----------~~rItVI~GKiEdie--  239 (517)
T KOG1500|consen  173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNL-----------ADRITVIPGKIEDIE--  239 (517)
T ss_pred             ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCc-----------cceEEEccCcccccc--
Confidence            57899999999999999999999999996 9999999999999999998843           578999995555543  


Q ss_pred             ccCCCCccEEEEcccccC---CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~---~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        .+++.|+||+-+.-|.   +..++.-+- .++.|+|+|..+-..
T Consensus       240 --LPEk~DviISEPMG~mL~NERMLEsYl~-Ark~l~P~GkMfPT~  282 (517)
T KOG1500|consen  240 --LPEKVDVIISEPMGYMLVNERMLESYLH-ARKWLKPNGKMFPTV  282 (517)
T ss_pred             --CchhccEEEeccchhhhhhHHHHHHHHH-HHhhcCCCCcccCcc
Confidence              4679999998765554   333333322 347899999877553

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.31  E-value=5.1e-11  Score=98.70  Aligned_cols=109  Identities=14%  Similarity=0.087  Sum_probs=82.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|.+++.+++.+.+|+++|. +++++.+++|++.|+.            .++++...|..+...  ...
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l------------~~v~~~~~D~~~~~~--~~~  238 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL------------TNVQFQALDSTQFAT--AQG  238 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEcCHHHHHH--hcC
Confidence            5689999999999999999999989999999 8899999999999864            367887766544321  123


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      .+||+|+.+++  .......+++.+.+ ++|+..+|++........+
T Consensus       239 ~~~D~Vv~dPP--r~G~~~~~~~~l~~-~~~~~ivyvsc~p~t~~rd  282 (315)
T PRK03522        239 EVPDLVLVNPP--RRGIGKELCDYLSQ-MAPRFILYSSCNAQTMAKD  282 (315)
T ss_pred             CCCeEEEECCC--CCCccHHHHHHHHH-cCCCeEEEEECCcccchhH
Confidence            47999999877  23445566666555 5688889988776555444

>PRK06922 hypothetical protein; Provisional

Probab=99.31  E-value=1.4e-11  Score=108.81  Aligned_cols=106  Identities=19%  Similarity=0.204  Sum_probs=79.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .++.+|||+|||+|..+..+++.  +.+|+++|+ +.|++.++++...++             .++.+...|..+... .
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-------------~~ie~I~gDa~dLp~-~  482 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-------------RSWNVIKGDAINLSS-S  482 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------------CCeEEEEcchHhCcc-c
Confidence            35789999999999998888875  458999999 779999998865542             245555544433221 1


Q ss_pred             cCCCCccEEEEcccccCC-------------cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~-------------~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..+++||+|+++.++++.             .....+++.+.+.|+|||.+++...
T Consensus       483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            235689999998877532             3457889999999999999999864

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.31  E-value=3.5e-11  Score=94.55  Aligned_cols=125  Identities=18%  Similarity=0.065  Sum_probs=82.6

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccC---CC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---NP  117 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---~~  117 (205)
                      ...|.+|+...        ...++.+|||+|||.|.-++.+|.+|.+|+++|+ +.+++.+..   .++......   ..
T Consensus        23 ~~~L~~~~~~~--------~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~   91 (218)
T PRK13255         23 NPLLQKYWPAL--------ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEF   91 (218)
T ss_pred             CHHHHHHHHhh--------CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccc
Confidence            55667776532        1224679999999999999999999999999999 778886532   232210000   00


Q ss_pred             CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEE
Q 028673          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      ......++++...|..+...  .....||.|+..-++.+  .+..+..++.+.++|+|||+.++
T Consensus        92 ~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255         92 EHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             cccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            01123456766655554421  11357999998776654  34567889999999999997444

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.31  E-value=2.1e-11  Score=96.28  Aligned_cols=94  Identities=20%  Similarity=0.276  Sum_probs=71.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++++...+.           .+++.+...++..      .
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~------~  124 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL-----------AGNITFEVGDLES------L  124 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccCcEEEEcCchh------c
Confidence            35679999999999999999999999999999 7899999998876532           2356777755322      2


Q ss_pred             CCCccEEEEcccccCC--cChHhHHHHHHHhhCC
Q 028673          142 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGP  173 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~  173 (205)
                      .++||+|++++++++.  .....+++.+.+++++
T Consensus       125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~  158 (230)
T PRK07580        125 LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRG  158 (230)
T ss_pred             cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCC
Confidence            4689999999998653  3455677777776643

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.30  E-value=1.9e-11  Score=99.14  Aligned_cols=156  Identities=22%  Similarity=0.181  Sum_probs=101.3

Q ss_pred             EEEEEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEE
Q 028673           14 INLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITT   92 (205)
Q Consensus        14 ~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~   92 (205)
                      ..++-.|..+.+.-. .+-.||..+.  -...-+++...          .+|++||++-|-||..|+.+++.|| +|+.+
T Consensus        86 ~~v~E~gl~f~v~l~-~gqktGlFlD--qR~nR~~v~~~----------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~V  152 (286)
T PF10672_consen   86 FTVEENGLKFRVDLT-DGQKTGLFLD--QRENRKWVRKY----------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSV  152 (286)
T ss_dssp             EEEEETTEEEEEESS-SSSSTSS-GG--GHHHHHHHHHH----------CTTCEEEEET-TTTHHHHHHHHTTESEEEEE
T ss_pred             eEEEECCEEEEEEcC-CCCcceEcHH--HHhhHHHHHHH----------cCCCceEEecCCCCHHHHHHHHCCCCEEEEE
Confidence            344444544444322 2556776544  22233444332          2689999999999999999999998 59999


Q ss_pred             cC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc------ChHhHHH
Q 028673           93 DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------LLEPLLQ  165 (205)
Q Consensus        93 D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~------~~~~ll~  165 (205)
                      |. ..+++.+++|++.|+..          ..++++...|.-+.-.......+||+||+-++-|...      .+..++.
T Consensus       153 D~S~~al~~a~~N~~lNg~~----------~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~  222 (286)
T PF10672_consen  153 DSSKRALEWAKENAALNGLD----------LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLR  222 (286)
T ss_dssp             ES-HHHHHHHHHHHHHTT-C----------CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence            99 67999999999999752          2467777755433211111245899999988877643      4567888


Q ss_pred             HHHHhhCCCcEEEEEEeeccchhHHHH
Q 028673          166 TIFALSGPKTTILVMFSLSMFSLTFFC  192 (205)
Q Consensus       166 ~~~~~l~~~g~~~i~~~~r~~~~~~~~  192 (205)
                      .+.++++|||.++++......+.++|.
T Consensus       223 ~a~~ll~~gG~l~~~scs~~i~~~~l~  249 (286)
T PF10672_consen  223 RAMKLLKPGGLLLTCSCSHHISPDFLL  249 (286)
T ss_dssp             HHHHTEEEEEEEEEEE--TTS-HHHHH
T ss_pred             HHHHhcCCCCEEEEEcCCcccCHHHHH
Confidence            888999999999999888777766543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK06202 hypothetical protein; Provisional

Probab=99.29  E-value=3e-11  Score=95.80  Aligned_cols=102  Identities=16%  Similarity=0.140  Sum_probs=73.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh----C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL----G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~----g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ++.+|||+|||+|.++..+++.    |  .+|+++|. ++|++.++++...++               +.+...+-....
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---------------~~~~~~~~~~l~  124 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---------------VTFRQAVSDELV  124 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---------------CeEEEEeccccc
Confidence            5579999999999998888753    3  47999999 889999988755432               333333322222


Q ss_pred             CcccCCCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                         ..+++||+|+++.++++...  ...+++.+.+.++  |.+++..-.|.
T Consensus       125 ---~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        125 ---AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             ---ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence               23568999999999988665  3578888888887  56666665555

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.29  E-value=3.5e-11  Score=81.74  Aligned_cols=100  Identities=21%  Similarity=0.264  Sum_probs=78.5

Q ss_pred             eEEEeCCCccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           67 RVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      +|+|+|||+|..+..+++ .+.+++++|. ++++..++++...+.            ..++.+...++.+...  ...++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~   66 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------------ADNVEVLKGDAEELPP--EADES   66 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------------ccceEEEEcChhhhcc--ccCCc
Confidence            589999999999998887 4557999999 677777775333332            2457777766665532  13568


Q ss_pred             ccEEEEcccccC-CcChHhHHHHHHHhhCCCcEEEEE
Q 028673          145 FDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       145 fD~Ii~~d~~y~-~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ||+|+++.++++ ......+++.+.+.++++|.+++.
T Consensus        67 ~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          67 FDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999999988 888899999999999999999887

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.29  E-value=6.6e-11  Score=100.17  Aligned_cols=109  Identities=11%  Similarity=0.061  Sum_probs=84.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+.+|||||||+|.+++.++..+.+|+++|+ +++++.+++|++.|+.            +++++...|..+...  ...
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~------------~~~~~~~~d~~~~~~--~~~  298 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL------------DNLSFAALDSAKFAT--AQM  298 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHHHH--hcC
Confidence            4678999999999999999998989999999 8899999999999864            367787766543221  112


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      .+||+|+..++ | ....+.+++.+.+ ++|++.+|++........+
T Consensus       299 ~~~D~vi~DPP-r-~G~~~~~l~~l~~-~~p~~ivyvsc~p~TlaRD  342 (374)
T TIGR02085       299 SAPELVLVNPP-R-RGIGKELCDYLSQ-MAPKFILYSSCNAQTMAKD  342 (374)
T ss_pred             CCCCEEEECCC-C-CCCcHHHHHHHHh-cCCCeEEEEEeCHHHHHHH
Confidence            46999999766 4 3566777777765 6899999999875555444

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.29  E-value=4.4e-11  Score=93.10  Aligned_cols=95  Identities=17%  Similarity=0.148  Sum_probs=68.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|..+..+++.  +.+++++|+ +++++.++++..                 ++.+...+..+    +.
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------------~~~~~~~d~~~----~~  101 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------------NINIIQGSLFD----PF  101 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------------CCcEEEeeccC----CC
Confidence            5678999999999999999876  578999999 789999887532                 23445544433    12


Q ss_pred             CCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEE
Q 028673          141 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .+++||+|+++.++++..  ....+++.+.+.+  ++.++++.
T Consensus       102 ~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       102 KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence            356899999999998753  3455666666665  34555543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.28  E-value=4.2e-12  Score=94.79  Aligned_cols=128  Identities=24%  Similarity=0.312  Sum_probs=90.2

Q ss_pred             ccc---ccHHHHHHHHhhhccCCCCCCCCCCC-CeEEEeCCCccHHHHHHHHhCCE--EEEEcC-cchHHHHHHHHHHhh
Q 028673           37 TVW---DASVVFVKYLEKNCRKGRFCPSKLKG-KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNT  109 (205)
Q Consensus        37 ~~W---~~~~~La~~l~~~~~~~~~~~~~~~~-~~VLdlGcGtGl~sl~~a~~g~~--v~~~D~-~~~l~~~~~n~~~n~  109 (205)
                      .+|   ++...+.+|+.......+    ..+. .+|||||||.|.+-..+++.|.+  .+++|+ +.++++|+.-+++++
T Consensus        40 EvWFg~~ae~riv~wl~d~~~~~r----v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~  115 (227)
T KOG1271|consen   40 EVWFGEDAEERIVDWLKDLIVISR----VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG  115 (227)
T ss_pred             ceecCCcHHHHHHHHHHhhhhhhh----hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence            556   556778888877642111    1122 39999999999999999998864  999999 779999776666665


Q ss_pred             hhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC--------cChHhHHHHHHHhhCCCcEEEEEE
Q 028673          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--------HLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~--------~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .           .+.|.+.++|..++.   ....+||+|+--..+-..        .-+..-+..+.++|+|||+++|..
T Consensus       116 ~-----------~n~I~f~q~DI~~~~---~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS  181 (227)
T KOG1271|consen  116 F-----------SNEIRFQQLDITDPD---FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS  181 (227)
T ss_pred             C-----------CcceeEEEeeccCCc---ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence            4           345999999988763   235678888644333221        112345678889999999999886


Q ss_pred             e
Q 028673          182 S  182 (205)
Q Consensus       182 ~  182 (205)
                      .
T Consensus       182 C  182 (227)
T KOG1271|consen  182 C  182 (227)
T ss_pred             c
Confidence            5

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.28  E-value=3.7e-11  Score=95.45  Aligned_cols=104  Identities=14%  Similarity=0.077  Sum_probs=79.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-c
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-~  138 (205)
                      +.++|||+|||+|..++.++..   +.+|+++|. +++++.+++|++.++.           .+++++...+..+.-. +
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----------~~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----------DHKINFIQSDALSALDQL  136 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEccHHHHHHHH
Confidence            5789999999999988888764   357999999 8899999999999865           3578888866654311 1


Q ss_pred             c--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .  ...++||+|+..   -....+..+++.+.++++|||.+++-.
T Consensus       137 ~~~~~~~~fD~VfiD---a~k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        137 LNNDPKPEFDFAFVD---ADKPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             HhCCCCCCCCEEEEC---CCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            1  114589999885   224566788899999999999877643

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=99.28  E-value=9.8e-13  Score=104.85  Aligned_cols=162  Identities=21%  Similarity=0.254  Sum_probs=107.4

Q ss_pred             CCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHH-HHHHHHH
Q 028673           30 NSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLP-LLKRNVE  106 (205)
Q Consensus        30 ~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~-~~~~n~~  106 (205)
                      +....|.++|.|+..|..++.... ..   .-.+.+++|||||||+|++++.+.+.|+ ++.+.|+ .+.++ ..-.|+.
T Consensus        86 ~vyEGg~k~wecS~dl~~~l~~e~-~~---~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~  161 (282)
T KOG2920|consen   86 GVYEGGLKLWECSVDLLPYLKEEI-GA---QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNIL  161 (282)
T ss_pred             ceeecceEEeecHHHHHHHHHHHh-hh---heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeeccccee
Confidence            345789999999999999998542 00   2356789999999999999999999995 6999999 56653 2223333


Q ss_pred             HhhhhhccCCCCCCCCCceEEEEe---ecCCCCCcccCCCCccEEEEcccccCCcChHhH-HHHHHHhhCCCcEEEEEEe
Q 028673          107 WNTSRISQMNPGSDLLGSIQAVEL---DWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL-LQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       107 ~n~~~~~~~~~~~~~~~~i~~~~~---dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l-l~~~~~~l~~~g~~~i~~~  182 (205)
                      .|...-.+.+   +......+..-   ||.....   ...+||+|+++.++|.....+.+ ......+++++|.++++..
T Consensus       162 ~~~~~~~~~~---e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK  235 (282)
T KOG2920|consen  162 VNSHAGVEEK---ENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAK  235 (282)
T ss_pred             cchhhhhhhh---hcccceeccccccccchhhhc---cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhH
Confidence            3321100000   00011112222   4522210   01389999999999999998888 6666777899999999988


Q ss_pred             eccchh----HHHHHHhhhccCc
Q 028673          183 LSMFSL----TFFCWTRITADNT  201 (205)
Q Consensus       183 ~r~~~~----~~~~~~~~~~~~~  201 (205)
                      .-++..    ..|.|+.+..++.
T Consensus       236 ~~yFgVgg~i~~f~~~~~~~~d~  258 (282)
T KOG2920|consen  236 KLYFGVGGGIEEFNSKLMFDEDV  258 (282)
T ss_pred             hhccCcCcchhhhcccccccCCc
Confidence            777754    3455555555443

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.28  E-value=2e-11  Score=92.53  Aligned_cols=112  Identities=24%  Similarity=0.330  Sum_probs=82.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .+.|.+||||-||+|.+|+.+..+|+. ++++|. ..++..+++|++.-+.           ..+.++...|-...-...
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----------~~~~~~~~~da~~~L~~~  109 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----------EGEARVLRNDALRALKQL  109 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----------ccceEEEeecHHHHHHhc
Confidence            478999999999999999999999986 999999 7899999999887642           245566554433110011


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHH----HhhCCCcEEEEEEeecc
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIF----ALSGPKTTILVMFSLSM  185 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~----~~l~~~g~~~i~~~~r~  185 (205)
                      ...++||+|+. |+-|.....+.....+.    .+|+|++.+++......
T Consensus       110 ~~~~~FDlVfl-DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~  158 (187)
T COG0742         110 GTREPFDLVFL-DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDV  158 (187)
T ss_pred             CCCCcccEEEe-CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc
Confidence            11235999998 78888777754444444    56999999999888663

>PLN02672 methionine S-methyltransferase

Probab=99.27  E-value=7.9e-11  Score=109.75  Aligned_cols=140  Identities=19%  Similarity=0.121  Sum_probs=94.8

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhcc--
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQ--  114 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~--  114 (205)
                      +.+..|.+.+....      ...+++++|||||||+|.+++.+++..  ++|+++|+ +++++.+++|++.|+..-..  
T Consensus       100 peTE~lve~L~~~~------~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~  173 (1082)
T PLN02672        100 DWSFTFYEGLNRHP------DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLP  173 (1082)
T ss_pred             hhHHHHHHHHHhcc------cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccc
Confidence            34667777754321      123456799999999999999999874  47999999 88999999999998531000  


Q ss_pred             --CCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC---------------------------------
Q 028673          115 --MNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------------------  159 (205)
Q Consensus       115 --~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------------------------------  159 (205)
                        ........+++.+...||.+..  .....+||+||+|+++-....                                 
T Consensus       174 ~~~~~~~~l~~rV~f~~sDl~~~~--~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~  251 (1082)
T PLN02672        174 VYDGEGKTLLDRVEFYESDLLGYC--RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQ  251 (1082)
T ss_pred             ccccccccccccEEEEECchhhhc--cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCC
Confidence              0000012346888888886542  111236999999988532110                                 


Q ss_pred             -----hHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          160 -----LEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       160 -----~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                           +..++....++|+|||.+++....+...
T Consensus       252 dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~  284 (1082)
T PLN02672        252 FGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQ  284 (1082)
T ss_pred             cHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence                 1456677778899999999888755543

>PHA03412 putative methyltransferase; Provisional

Probab=99.26  E-value=5e-11  Score=93.66  Aligned_cols=92  Identities=17%  Similarity=0.161  Sum_probs=66.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-----CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+.+|||+|||+|.+++.+++.     ..+|+++|+ +.+++.+++|+.                 ++.+...|..... 
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------------~~~~~~~D~~~~~-  110 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------------EATWINADALTTE-  110 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------------CCEEEEcchhccc-
Confidence            3679999999999999999874     347999999 789999998753                 2345554443221 


Q ss_pred             cccCCCCccEEEEcccccCCc------------ChHhHHHHHHHhhCCCcE
Q 028673          138 IKAVAPPFDYIIGTDVVYAEH------------LLEPLLQTIFALSGPKTT  176 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~------------~~~~ll~~~~~~l~~~g~  176 (205)
                         ...+||+||+|++++...            .+..+++...+++++|+.
T Consensus       111 ---~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        111 ---FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             ---ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence               245899999999998421            144578888886766664

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.26  E-value=1.1e-10  Score=100.57  Aligned_cols=105  Identities=21%  Similarity=0.226  Sum_probs=77.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      +|.+|||+|||+|..++.++..+  .+|+++|. +++++.+++|++.++.             .+.+...|..+.... .
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------------~~~~~~~D~~~~~~~-~  309 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------------KATVIVGDARDPAQW-W  309 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CeEEEEcCcccchhh-c
Confidence            67899999999999999999875  47999999 7899999999998854             245555554432211 1


Q ss_pred             CCCCccEEEEcccccCCc----------------------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ...+||.|++..+.....                      ....+++.+.++|+|||.++++..
T Consensus       310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            245799999765543210                      123688888999999999988764

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=6.1e-12  Score=90.59  Aligned_cols=107  Identities=21%  Similarity=0.315  Sum_probs=79.7

Q ss_pred             CeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cch
Q 028673           20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEV   97 (205)
Q Consensus        20 ~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~   97 (205)
                      ...+.++|+++..+..       ..+..-+...       ..+++|++++|||||+|.+++..+..+.+ |+++|+ |++
T Consensus        18 Kpk~~LEQY~T~p~iA-------asM~~~Ih~T-------ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeA   83 (185)
T KOG3420|consen   18 KPKLLLEQYPTRPHIA-------ASMLYTIHNT-------YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEA   83 (185)
T ss_pred             ccchhhhhCCCcHHHH-------HHHHHHHHhh-------hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHH
Confidence            3466778888654433       1233334333       46789999999999999999999888887 999999 899


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC
Q 028673           98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA  156 (205)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~  156 (205)
                      ++.+.+|++.-.+             ++++.+.+..+..   .....||..+.++++--
T Consensus        84 LEIf~rNaeEfEv-------------qidlLqcdildle---~~~g~fDtaviNppFGT  126 (185)
T KOG3420|consen   84 LEIFTRNAEEFEV-------------QIDLLQCDILDLE---LKGGIFDTAVINPPFGT  126 (185)
T ss_pred             HHHHhhchHHhhh-------------hhheeeeeccchh---ccCCeEeeEEecCCCCc
Confidence            9999999987643             4566666666554   23478999999988754

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.26  E-value=9.6e-11  Score=101.37  Aligned_cols=105  Identities=18%  Similarity=0.137  Sum_probs=78.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+ +++++.+++|++.++.            .++.+...|..+...  
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~~--  315 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------------TNIETKALDARKVHE--  315 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCCcccccc--
Confidence            5789999999999999999875   357999999 7899999999998864            247777766554321  


Q ss_pred             cCCCCccEEEEcccccCCcC----------------------hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAEHL----------------------LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~----------------------~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ....+||+|++..+.+....                      ...+++.+.++|+|||.++.+..
T Consensus       316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc  380 (444)
T PRK14902        316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC  380 (444)
T ss_pred             hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence            11258999998655332111                      13578888999999999886543

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.25  E-value=4.8e-11  Score=90.90  Aligned_cols=114  Identities=15%  Similarity=0.017  Sum_probs=86.5

Q ss_pred             eEEEeCCCccHHHHHH-HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceE-EEEeecCCCCCcccCCC
Q 028673           67 RVIELGAGCGVAGFGM-ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ-AVELDWGNEDHIKAVAP  143 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~-a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~-~~~~dw~~~~~~~~~~~  143 (205)
                      .|||+|||||..=-+. .+.+.+||++|- +.|-+.+.+.++.+..            .++. +...+-.+..+  ..+.
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~------------~~~~~fvva~ge~l~~--l~d~  144 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP------------LQVERFVVADGENLPQ--LADG  144 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC------------cceEEEEeechhcCcc--cccC
Confidence            5899999999643333 245789999999 7799999999888843            2333 44433333332  2468


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH-HHHHH
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT-FFCWT  194 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~-~~~~~  194 (205)
                      ++|.|++.-++...++....++.+.++|+|||++++..+.+.+... .+.|+
T Consensus       145 s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q  196 (252)
T KOG4300|consen  145 SYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQ  196 (252)
T ss_pred             CeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHH
Confidence            9999999999999999999999999999999999998887766442 34553

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.25  E-value=1.7e-10  Score=99.50  Aligned_cols=107  Identities=14%  Similarity=0.094  Sum_probs=81.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-CcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~~  141 (205)
                      .+.+|||+|||+|.+++.+++.+.+|+++|. +++++.+++|++.|+.            .++++...|+.+.. .....
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~------------~nv~~~~~d~~~~l~~~~~~  359 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI------------ANVEFLAGTLETVLPKQPWA  359 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC------------CceEEEeCCHHHHHHHHHhc
Confidence            4579999999999999999998889999999 8899999999998864            46788887664321 11112


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..+||+|+..++-  ......+++.+.+ ++|++.+|++.....
T Consensus       360 ~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvsc~p~t  400 (431)
T TIGR00479       360 GQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVSCNPAT  400 (431)
T ss_pred             CCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEcCCHHH
Confidence            3579999986653  2445777777665 778898888865433

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PHA03411 putative methyltransferase; Provisional

Probab=99.25  E-value=5.5e-11  Score=95.42  Aligned_cols=99  Identities=17%  Similarity=0.122  Sum_probs=73.7

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ..+|||+|||+|.+++.++++  +.+|+++|+ +.+++.+++|..                 ++.+...|..+..    .
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------------~v~~v~~D~~e~~----~  123 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------------EAEWITSDVFEFE----S  123 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------------CCEEEECchhhhc----c
Confidence            468999999999999988876  458999999 789998887631                 2455554443321    2


Q ss_pred             CCCccEEEEcccccCCcC--------------------hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAEHL--------------------LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~--------------------~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..+||+|++++++++...                    +..+++....+|+|+|.+++++..+
T Consensus       124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~  186 (279)
T PHA03411        124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR  186 (279)
T ss_pred             cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence            358999999999987211                    3566777788899999998887643

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.24  E-value=2.1e-10  Score=94.93  Aligned_cols=100  Identities=23%  Similarity=0.198  Sum_probs=73.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++.+|||+|||+|..++.+++..   ..|+++|. +++++.+++|++.++.            +++.+...|..+.. 
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------------~nV~~i~gD~~~~~-  144 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------------ENVIFVCGDGYYGV-  144 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCChhhcc-
Confidence            3367899999999999999999764   25999999 8899999999988753            35666665433221 


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                        ....+||+|+++.      ..+.+...+.+.|+|||.+++...
T Consensus       145 --~~~~~fD~Ii~~~------g~~~ip~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        145 --PEFAPYDVIFVTV------GVDEVPETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             --cccCCccEEEECC------chHHhHHHHHHhcCCCCEEEEEeC
Confidence              1235799999862      223344566788999999888653

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.23  E-value=1.7e-10  Score=90.53  Aligned_cols=108  Identities=16%  Similarity=0.187  Sum_probs=85.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh--------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeec
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL--------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW  132 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~--------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw  132 (205)
                      ...+.+|||++||||-+++.+.+.        ..+|+..|+ ++|+...++..+.....         ...++.+..   
T Consensus        98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---------~~~~~~w~~---  165 (296)
T KOG1540|consen   98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---------ASSRVEWVE---  165 (296)
T ss_pred             CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---------cCCceEEEe---
Confidence            336789999999999999888765        246999999 89999999887664331         122366666   


Q ss_pred             CCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          133 GNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       133 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ++.+.++..+..||....+--|-+..+++..+++.++.|||||++++..
T Consensus       166 ~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe  214 (296)
T KOG1540|consen  166 GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE  214 (296)
T ss_pred             CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            3444455667899999998888888999999999999999999988554

>PLN03075 nicotianamine synthase; Provisional

Probab=99.23  E-value=1.6e-10  Score=93.95  Aligned_cols=104  Identities=12%  Similarity=0.029  Sum_probs=80.8

Q ss_pred             CCCeEEEeCCCcc-HHHHHHHH-h--CCEEEEEcC-cchHHHHHHHHHH-hhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           64 KGKRVIELGAGCG-VAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        64 ~~~~VLdlGcGtG-l~sl~~a~-~--g~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++|+|+|||.| +.++.++. +  +.+++++|. +++++.++++++. .+           ..+++++...|..+.. 
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g-----------L~~rV~F~~~Da~~~~-  190 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD-----------LSKRMFFHTADVMDVT-  190 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC-----------ccCCcEEEECchhhcc-
Confidence            6689999999965 65666653 3  457999999 8899999999865 32           2457899887766532 


Q ss_pred             cccCCCCccEEEEcccccC-CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 IKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~-~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        ....+||+|++.-++|. .+....+++.+.+.|+|||.+++-.
T Consensus       191 --~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        191 --ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             --cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence              12468999999944555 4789999999999999999999885

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.23  E-value=5.7e-11  Score=96.01  Aligned_cols=118  Identities=16%  Similarity=0.155  Sum_probs=78.0

Q ss_pred             CCCeEEEeCCCccH----HHHHHHHh-------CCEEEEEcC-cchHHHHHHHHHHh----hhhh-------ccCCC---
Q 028673           64 KGKRVIELGAGCGV----AGFGMALL-------GCNVITTDQ-IEVLPLLKRNVEWN----TSRI-------SQMNP---  117 (205)
Q Consensus        64 ~~~~VLdlGcGtGl----~sl~~a~~-------g~~v~~~D~-~~~l~~~~~n~~~n----~~~~-------~~~~~---  117 (205)
                      ++.+|+|+|||||-    +++.++..       +.+|+++|+ ++|++.|++.+-..    ....       .....   
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            34689999999995    45555543       247999999 78999998764110    0000       00000   


Q ss_pred             -CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          118 -GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       118 -~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                       +.....++.+...|..+..   ...++||+|++..++.+..  ....+++.+.+.|+|||.+++...-.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~---~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~  245 (264)
T smart00138      179 VKPELKERVRFAKHNLLAES---PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES  245 (264)
T ss_pred             EChHHhCcCEEeeccCCCCC---CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence             0011235677776555432   2356899999998886653  45689999999999999999976533

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.22  E-value=1.8e-12  Score=100.09  Aligned_cols=98  Identities=19%  Similarity=0.269  Sum_probs=75.1

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEE-eecCCCCCcccCCC
Q 028673           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-LDWGNEDHIKAVAP  143 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~-~dw~~~~~~~~~~~  143 (205)
                      +++||||||||+.|..+-.+..+.+++|+ .+|++.+.+.=-               .+...... ..+...    ....
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~---------------YD~L~~Aea~~Fl~~----~~~e  187 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL---------------YDTLYVAEAVLFLED----LTQE  187 (287)
T ss_pred             ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc---------------hHHHHHHHHHHHhhh----ccCC
Confidence            58999999999999999999999999999 668877654210               00000000 001111    2356


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +||+|.+.||+-+...++.++..+..+|+|||.+.++.+
T Consensus       188 r~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE  226 (287)
T COG4976         188 RFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVE  226 (287)
T ss_pred             cccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence            899999999999999999999999999999999999865

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.21  E-value=3.5e-10  Score=91.45  Aligned_cols=108  Identities=17%  Similarity=0.157  Sum_probs=78.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      +|.+|||+|||+|..++.++.+   ...|+++|. +.+++.+++|++.++.            .++.+...|.....   
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~---  135 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------------LNVAVTNFDGRVFG---  135 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEecCCHHHhh---
Confidence            6789999999999999988875   247999999 7899999999998864            34666665543321   


Q ss_pred             cCCCCccEEEEcccccCCc----------------------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          140 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ....+||.|+...+.....                      ....+++.+.++++|||.++.+...-..
T Consensus       136 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       136 AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            1234699999855433211                      1235888888999999998877554433

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.21  E-value=4.6e-10  Score=88.97  Aligned_cols=112  Identities=16%  Similarity=0.180  Sum_probs=83.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe----ecCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL----DWGN  134 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~----dw~~  134 (205)
                      .+++..+||+|||+|.+|+.++..  ..+|+++|. +.++..+.+|+..+..           .+.+.++..    +|.+
T Consensus       146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----------~g~i~v~~~~me~d~~~  214 (328)
T KOG2904|consen  146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----------SGRIEVIHNIMESDASD  214 (328)
T ss_pred             hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----------cCceEEEeccccccccc
Confidence            345568999999999999988754  456999999 6799999999999865           567777743    4444


Q ss_pred             CCCcccCCCCccEEEEcccccCCcC--------------------------hHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          135 EDHIKAVAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       135 ~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------------~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ...  ...+++|++++|+++-..++                          +..++.-+.++|+|||.+++....|..
T Consensus       215 ~~~--l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~  290 (328)
T KOG2904|consen  215 EHP--LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKE  290 (328)
T ss_pred             ccc--cccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccccc
Confidence            432  34579999999988755332                          223455566789999999999985544

>TIGR03438 probable methyltransferase

Probab=99.21  E-value=1.6e-10  Score=95.18  Aligned_cols=112  Identities=14%  Similarity=0.068  Sum_probs=77.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .+.+|||||||||..+..+++.   +.+|+++|+ ++|++.+++++.....           ..++.....|..+.....
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----------~~~v~~i~gD~~~~~~~~  131 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----------QLEVHGICADFTQPLALP  131 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----------CceEEEEEEcccchhhhh
Confidence            4578999999999999988876   467999999 7899999988775421           123555565554432111


Q ss_pred             cC--CCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          140 AV--APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       140 ~~--~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ..  .....+++...++++.  +....+++.+++.|+|||.+++....+..
T Consensus       132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~  182 (301)
T TIGR03438       132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKD  182 (301)
T ss_pred             cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence            11  1123344554566654  34567999999999999999988765444

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.20  E-value=2.9e-10  Score=85.91  Aligned_cols=98  Identities=15%  Similarity=0.145  Sum_probs=68.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|.++..+++++.+|+++|+ +.+++.+++|+...              +++++...|..+..   ...
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~--------------~~v~ii~~D~~~~~---~~~   75 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA--------------DNLTVIHGDALKFD---LPK   75 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC--------------CCEEEEECchhcCC---ccc
Confidence            5679999999999999999999889999999 77999999887532              35777776665443   223


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHh--hCCCcEEEEEE
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILVMF  181 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~--l~~~g~~~i~~  181 (205)
                      .+||.|+++.+++.   ..+++..+.+.  +.++|.+++-.
T Consensus        76 ~~~d~vi~n~Py~~---~~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       76 LQPYKVVGNLPYNI---STPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             cCCCEEEECCCccc---HHHHHHHHHhcCCCcceEEEEEEH
Confidence            36999998765442   23444444332  23566665543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.19  E-value=1.1e-10  Score=91.01  Aligned_cols=101  Identities=24%  Similarity=0.324  Sum_probs=72.5

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+|.+|||+|||||..+..++.. |.  +|+++|. ++..+.+++|++..+.            .++.+...|-... 
T Consensus        69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------------~nv~~~~gdg~~g-  135 (209)
T PF01135_consen   69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------------DNVEVVVGDGSEG-  135 (209)
T ss_dssp             TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------------HSEEEEES-GGGT-
T ss_pred             hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------------CceeEEEcchhhc-
Confidence            4557889999999999999999987 43  5999999 8899999999998764            3678877553322 


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                        .....+||.|+.+-.+      +.+-..+.+.|++||++++-..
T Consensus       136 --~~~~apfD~I~v~~a~------~~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  136 --WPEEAPFDRIIVTAAV------PEIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             --TGGG-SEEEEEESSBB------SS--HHHHHTEEEEEEEEEEES
T ss_pred             --cccCCCcCEEEEeecc------chHHHHHHHhcCCCcEEEEEEc
Confidence              2234689999998443      2344556677899999888665

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.19  E-value=4.2e-10  Score=96.88  Aligned_cols=109  Identities=17%  Similarity=0.125  Sum_probs=80.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      +|.+|||+|||+|..++.++..   +.+|+++|+ +++++.+++|++..+.            .++.+...|......  
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------------~~v~~~~~Da~~l~~--  302 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------------SSIEIKIADAERLTE--  302 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhhhhh--
Confidence            6789999999999999988876   457999999 7899999999988754            246777766554321  


Q ss_pred             cCCCCccEEEEcccccCCc----------------------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          140 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ...++||.|++..+.....                      ....++..+.++|+|||.++.+...-..
T Consensus       303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  371 (431)
T PRK14903        303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK  371 (431)
T ss_pred             hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence            1245799999854442211                      1246688888999999998888764433

>PTZ00146 fibrillarin; Provisional

Probab=99.19  E-value=3.9e-10  Score=91.45  Aligned_cols=132  Identities=12%  Similarity=0.057  Sum_probs=84.5

Q ss_pred             ccccccc-HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhh
Q 028673           35 GTTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNT  109 (205)
Q Consensus        35 g~~~W~~-~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~  109 (205)
                      -.++|+- ---||..+......    ....++.+|||||||+|..+..++...   ..|+++|+ +.+++.+...++.. 
T Consensus       106 eyR~w~p~rSKlaa~i~~g~~~----l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-  180 (293)
T PTZ00146        106 EYRVWNPFRSKLAAAIIGGVAN----IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-  180 (293)
T ss_pred             eeeeeCCcccHHHHHHHCCcce----eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-
Confidence            3678854 22455444332111    123467899999999999999999873   36999999 66654444333221 


Q ss_pred             hhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                                   .++..+..|...........+.||+|++.-  ..++....++..+.++|||+|.++++.+.+..
T Consensus       181 -------------~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv--a~pdq~~il~~na~r~LKpGG~~vI~ika~~i  242 (293)
T PTZ00146        181 -------------PNIVPIIEDARYPQKYRMLVPMVDVIFADV--AQPDQARIVALNAQYFLKNGGHFIISIKANCI  242 (293)
T ss_pred             -------------CCCEEEECCccChhhhhcccCCCCEEEEeC--CCcchHHHHHHHHHHhccCCCEEEEEEecccc
Confidence                         245666655443322222335799998853  34555556777899999999999997665544

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.18  E-value=6.1e-10  Score=96.09  Aligned_cols=107  Identities=21%  Similarity=0.173  Sum_probs=78.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      +|.+|||+|||+|..++.+++. +  .+|+++|. +++++.+++|++.++.            .++.+...|..+.....
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~~  319 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------------KSIKILAADSRNLLELK  319 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CeEEEEeCChhhccccc
Confidence            5789999999999999999876 2  47999999 7899999999998864            34677765554332110


Q ss_pred             -cCCCCccEEEEcccc------cCCcC----------------hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 -AVAPPFDYIIGTDVV------YAEHL----------------LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 -~~~~~fD~Ii~~d~~------y~~~~----------------~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                       ....+||.|++..+.      .....                ...+++.+.++++|||.++.+..
T Consensus       320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc  385 (434)
T PRK14901        320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC  385 (434)
T ss_pred             ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence             124579999974332      11111                35778888999999999887754

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.18  E-value=2.7e-10  Score=95.84  Aligned_cols=109  Identities=15%  Similarity=0.070  Sum_probs=82.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+..+||||||+|...+.+|+..  ..++|+|+ +.++..+.+++..++.            .++.+...|...... ..
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------------~NV~~i~~DA~~ll~-~~  188 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------------KNLLIINYDARLLLE-LL  188 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHhhh-hC
Confidence            35689999999999999999885  46999999 7899999999888754            468888877654321 12


Q ss_pred             CCCCccEEEEcccccCCc------ChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .++++|.|+.+-+.-+..      ..+.+++.+.++|+|||.+.+..-...
T Consensus       189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~  239 (390)
T PRK14121        189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL  239 (390)
T ss_pred             CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence            357899999874433221      126899999999999999998755333

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.18  E-value=1.6e-10  Score=95.26  Aligned_cols=84  Identities=18%  Similarity=0.116  Sum_probs=59.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEe-ecCCCC-C
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVEL-DWGNED-H  137 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~i~~~~~-dw~~~~-~  137 (205)
                      .+.+|||||||+|.+...++.+  +.+++++|+ +.+++.+++|++.| +.           .+++.+... +-.+.. .
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----------~~~I~~~~~~~~~~i~~~  182 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----------NGAIRLRLQKDSKAIFKG  182 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----------cCcEEEEEccchhhhhhc
Confidence            4578999999999777666654  678999999 88999999999999 44           345665431 111111 1


Q ss_pred             cccCCCCccEEEEcccccCCc
Q 028673          138 IKAVAPPFDYIIGTDVVYAEH  158 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~  158 (205)
                      ......+||+|++|+++|...
T Consensus       183 i~~~~~~fDlivcNPPf~~s~  203 (321)
T PRK11727        183 IIHKNERFDATLCNPPFHASA  203 (321)
T ss_pred             ccccCCceEEEEeCCCCcCcc
Confidence            111246899999999988743

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.17  E-value=4.2e-10  Score=91.35  Aligned_cols=94  Identities=13%  Similarity=0.117  Sum_probs=68.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-----CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+.+|||+|||+|..+..+++..     .+|+++|+ +++++.++++.                 .++.+...+..+.  
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------------~~~~~~~~d~~~l--  145 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------------PQVTFCVASSHRL--  145 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------------CCCeEEEeecccC--
Confidence            34689999999999998887652     36999999 77888876542                 2355666554432  


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                       +..+++||+|++.   +.    +..++.+.+.|+|||.++++.+..
T Consensus       146 -p~~~~sfD~I~~~---~~----~~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        146 -PFADQSLDAIIRI---YA----PCKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             -CCcCCceeEEEEe---cC----CCCHHHHHhhccCCCEEEEEeCCC
Confidence             2335689999975   32    234578889999999999987643

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.17  E-value=7.2e-10  Score=93.13  Aligned_cols=107  Identities=12%  Similarity=0.044  Sum_probs=80.6

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc-----
Q 028673           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-----  139 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~-----  139 (205)
                      .+|||||||+|.+|+.+++...+|+++|. +++++.+++|++.|+.            .++.+...|..+.....     
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~------------~~v~~~~~d~~~~~~~~~~~~~  266 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI------------DNVQIIRMSAEEFTQAMNGVRE  266 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEEcCHHHHHHHHhhccc
Confidence            46999999999999999988878999999 8899999999999964            35777776654321100     


Q ss_pred             c---C-----CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          140 A---V-----APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       140 ~---~-----~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      .   .     ...||+|+.-++  .....+.+++.+.+   +++.+|++........+
T Consensus       267 ~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~ivYvsC~p~tlaRD  319 (353)
T TIGR02143       267 FRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YERILYISCNPETLKAN  319 (353)
T ss_pred             cccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCcEEEEEcCHHHHHHH
Confidence            0   0     124899999666  45667777777755   78999999876665554

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK04457 spermidine synthase; Provisional

Probab=99.17  E-value=2.3e-10  Score=92.32  Aligned_cols=108  Identities=10%  Similarity=0.082  Sum_probs=78.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++|||||||+|.++..+++.  +.+|+++|+ +++++.+++++..+.           ..+++++...|..+.-  ..
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-----------~~~rv~v~~~Da~~~l--~~  132 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE-----------NGERFEVIEADGAEYI--AV  132 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC-----------CCCceEEEECCHHHHH--Hh
Confidence            4578999999999999988876  457999999 889999999876542           1346777775543321  12


Q ss_pred             CCCCccEEEEcccccCCc------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          141 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ...+||+|+.. . |+..      ....+++.+.+.|+|||.+++....+..
T Consensus       133 ~~~~yD~I~~D-~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~  182 (262)
T PRK04457        133 HRHSTDVILVD-G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK  182 (262)
T ss_pred             CCCCCCEEEEe-C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence            24589999974 2 3322      2368999999999999999886554443

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.17  E-value=3.2e-10  Score=88.60  Aligned_cols=100  Identities=15%  Similarity=0.105  Sum_probs=71.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-  138 (205)
                      .++.+|||||||||..+..+++..   .+|+++|+.++.         +             ..++.+...|+.+.... 
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~---------~-------------~~~v~~i~~D~~~~~~~~  107 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD---------P-------------IVGVDFLQGDFRDELVLK  107 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc---------C-------------CCCcEEEecCCCChHHHH
Confidence            357799999999999999888873   369999994421         0             12467888777664310 


Q ss_pred             ----ccCCCCccEEEEcccccCCcC-----------hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          139 ----KAVAPPFDYIIGTDVVYAEHL-----------LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       139 ----~~~~~~fD~Ii~~d~~y~~~~-----------~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                          .....+||+|+++.+.+....           .+.+++.+.++|+|||.+++.....
T Consensus       108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188        108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence                122568999999765544322           2468899999999999999975443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.14  E-value=1e-09  Score=92.48  Aligned_cols=104  Identities=14%  Similarity=0.115  Sum_probs=78.1

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-ccc---
Q 028673           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA---  140 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-~~~---  140 (205)
                      .+||||+||+|.+|+.+++...+|+++|. +++++.+++|++.|+.            +++++...|..+.-. ...   
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~------------~~v~~~~~d~~~~l~~~~~~~~  275 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI------------DNVQIIRMSAEEFTQAMNGVRE  275 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEECCHHHHHHHHhhccc
Confidence            57999999999999999988778999999 8899999999999964            367777766543211 000   


Q ss_pred             ---------CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          141 ---------VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       141 ---------~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                               ...+||+|+.-++ + ....+.+++.+.+   +++.+|++......
T Consensus       276 ~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC~p~tl  325 (362)
T PRK05031        276 FNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISCNPETL  325 (362)
T ss_pred             ccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEeCHHHH
Confidence                     0225899999655 5 4666777777765   68889998776443

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.14  E-value=1.2e-09  Score=94.04  Aligned_cols=120  Identities=14%  Similarity=0.078  Sum_probs=81.3

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (205)
                      .++..++.++..           .+|.+|||+|||+|..++.++.. + .+|+++|. +++++.+++|++.++.      
T Consensus       225 ~~s~~~~~~L~~-----------~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~------  287 (426)
T TIGR00563       225 ASAQWVATWLAP-----------QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL------  287 (426)
T ss_pred             HHHHHHHHHhCC-----------CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC------
Confidence            456666666632           25789999999999999999876 3 57999999 7899999999998864      


Q ss_pred             CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEccc------ccCCcC----------------hHhHHHHHHHhhCCC
Q 028673          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV------VYAEHL----------------LEPLLQTIFALSGPK  174 (205)
Q Consensus       117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~------~y~~~~----------------~~~ll~~~~~~l~~~  174 (205)
                           ...+.....|...... .....+||.|++..+      +.....                ...+++.+.++|+||
T Consensus       288 -----~~~v~~~~~d~~~~~~-~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg  361 (426)
T TIGR00563       288 -----TIKAETKDGDGRGPSQ-WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG  361 (426)
T ss_pred             -----CeEEEEeccccccccc-cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                 1122223333221111 012457999986322      222111                257888999999999


Q ss_pred             cEEEEEEe
Q 028673          175 TTILVMFS  182 (205)
Q Consensus       175 g~~~i~~~  182 (205)
                      |.++++..
T Consensus       362 G~lvystc  369 (426)
T TIGR00563       362 GTLVYATC  369 (426)
T ss_pred             cEEEEEeC
Confidence            99988754

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.14  E-value=2.1e-09  Score=93.11  Aligned_cols=122  Identities=18%  Similarity=0.096  Sum_probs=85.0

Q ss_pred             cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhh
Q 028673           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRI  112 (205)
Q Consensus        37 ~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~  112 (205)
                      .+++.+..++..+..          ..+|.+|||+|||+|..++.++..   +.+|+++|. +++++.+++|++.++.  
T Consensus       233 ~vqd~~s~l~~~~l~----------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--  300 (445)
T PRK14904        233 SVQNPTQALACLLLN----------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI--  300 (445)
T ss_pred             EEeCHHHHHHHHhcC----------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--
Confidence            456544445444432          236789999999999999888864   357999999 7899999999988764  


Q ss_pred             ccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccc------cC-C--------c-------ChHhHHHHHHHh
Q 028673          113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV------YA-E--------H-------LLEPLLQTIFAL  170 (205)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~------y~-~--------~-------~~~~ll~~~~~~  170 (205)
                                .++++...|.....    ...+||.|+.-.+.      .. +        .       ....++..+.++
T Consensus       301 ----------~~v~~~~~Da~~~~----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~  366 (445)
T PRK14904        301 ----------TIIETIEGDARSFS----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL  366 (445)
T ss_pred             ----------CeEEEEeCcccccc----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence                      35677775554432    24579999863221      10 0        0       123588889999


Q ss_pred             hCCCcEEEEEEeec
Q 028673          171 SGPKTTILVMFSLS  184 (205)
Q Consensus       171 l~~~g~~~i~~~~r  184 (205)
                      ++|||+++++...-
T Consensus       367 lkpgG~lvystcs~  380 (445)
T PRK14904        367 LKPGGVLVYATCSI  380 (445)
T ss_pred             cCCCcEEEEEeCCC
Confidence            99999999887543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.11  E-value=2.5e-10  Score=87.64  Aligned_cols=99  Identities=19%  Similarity=0.178  Sum_probs=80.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .-.+|.|||||+|...-.++++  ++.++++|- ++|++.++..                 ..++++...|..+..    
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----------------lp~~~f~~aDl~~w~----   88 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----------------LPDATFEEADLRTWK----   88 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----------------CCCCceecccHhhcC----
Confidence            3468999999999999999987  678999999 8899887643                 234566665544443    


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...+.|++++|-++.+-.++..++..+...|.|||.+-+-.+.
T Consensus        89 p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd  131 (257)
T COG4106          89 PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD  131 (257)
T ss_pred             CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence            3458999999999999999999999999999999998777653

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.10  E-value=4.4e-10  Score=85.37  Aligned_cols=96  Identities=17%  Similarity=0.199  Sum_probs=70.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +|.+|||||||.|.+-..+.. ++.+.+++|+ ++.+..+.+    ++               +.+.+.|..+.-. ...
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG---------------v~Viq~Dld~gL~-~f~   72 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG---------------VSVIQGDLDEGLA-DFP   72 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC---------------CCEEECCHHHhHh-hCC
Confidence            478999999999977666664 6788999999 554433332    22               5677877665421 234


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +++||+||.+.++-....++.+++.+.+   -|...+++++
T Consensus        73 d~sFD~VIlsqtLQ~~~~P~~vL~EmlR---Vgr~~IVsFP  110 (193)
T PF07021_consen   73 DQSFDYVILSQTLQAVRRPDEVLEEMLR---VGRRAIVSFP  110 (193)
T ss_pred             CCCccEEehHhHHHhHhHHHHHHHHHHH---hcCeEEEEec
Confidence            7899999999999988888888776644   4667888876

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.08  E-value=4.6e-10  Score=87.22  Aligned_cols=105  Identities=17%  Similarity=0.150  Sum_probs=81.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-c
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-~  138 (205)
                      +.++|||+||++|..++.+|+.   +++|+.+|. ++..+.+++|++..+.           .+++++...+..+.-. +
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----------~~~I~~~~gda~~~l~~l  113 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----------DDRIEVIEGDALEVLPEL  113 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----------GGGEEEEES-HHHHHHHH
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----------CCcEEEEEeccHhhHHHH
Confidence            5679999999999999999975   578999999 8899999999998865           4578998866544211 1


Q ss_pred             cc--CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          139 KA--VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       139 ~~--~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..  ..++||+|+.-   .....+...++.+.+++++||.+++-.-
T Consensus       114 ~~~~~~~~fD~VFiD---a~K~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  114 ANDGEEGQFDFVFID---ADKRNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             HHTTTTTSEEEEEEE---STGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             HhccCCCceeEEEEc---ccccchhhHHHHHhhhccCCeEEEEccc
Confidence            11  13589999985   3567788889999999999998777644

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02476 O-methyltransferase

Probab=99.07  E-value=1.5e-09  Score=87.77  Aligned_cols=104  Identities=13%  Similarity=0.191  Sum_probs=80.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~  138 (205)
                      +.++|||+|+|+|..++.+|+.   +.+|+.+|. ++.++.+++|++.++.           .+++++...+..+.- .+
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----------~~~I~li~GdA~e~L~~l  186 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----------SHKVNVKHGLAAESLKSM  186 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence            5689999999999999999974   446999999 8899999999999865           457888875543321 11


Q ss_pred             --ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 --KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 --~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        ....++||+|+.-   -....+...++.+.++++|||.+++-.
T Consensus       187 ~~~~~~~~FD~VFID---a~K~~Y~~y~e~~l~lL~~GGvIV~DN  228 (278)
T PLN02476        187 IQNGEGSSYDFAFVD---ADKRMYQDYFELLLQLVRVGGVIVMDN  228 (278)
T ss_pred             HhcccCCCCCEEEEC---CCHHHHHHHHHHHHHhcCCCcEEEEec
Confidence              0113589999885   345678899999999999999977653

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.07  E-value=7.1e-09  Score=79.60  Aligned_cols=101  Identities=18%  Similarity=0.145  Sum_probs=67.6

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ...++.+|||+|||+|.++..+++..   .+|+++|++++.       ..               .++.+...|..+...
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~~---------------~~i~~~~~d~~~~~~   86 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------PI---------------ENVDFIRGDFTDEEV   86 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------cC---------------CCceEEEeeCCChhH
Confidence            34578899999999999999888763   369999994321       01               235666666654321


Q ss_pred             c-----ccCCCCccEEEEcccccC-----Cc------ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          138 I-----KAVAPPFDYIIGTDVVYA-----EH------LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       138 ~-----~~~~~~fD~Ii~~d~~y~-----~~------~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .     ....++||+|++..+.+.     ..      ..+.+++.+.++|+|||.+++....
T Consensus        87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438        87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence            0     012457999998643211     11      1367889999999999999996543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.05  E-value=2.2e-09  Score=83.78  Aligned_cols=106  Identities=19%  Similarity=0.146  Sum_probs=83.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEE-eecCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-LDWGNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~-~dw~~~~~~  138 (205)
                      ..++|||+|+++|+.++.+|..   ..++|.+|. ++..+.|++|++.-+.           .+++.... +|+.+.-..
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----------~~~i~~~~~gdal~~l~~  127 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----------DDRIELLLGGDALDVLSR  127 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------cceEEEEecCcHHHHHHh
Confidence            5689999999999999999975   347999999 8899999999999865           34566666 355443211


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                       ...++||+|+.-   ......+..++.+.++|+|||.+++-.-..
T Consensus       128 -~~~~~fDliFID---adK~~yp~~le~~~~lLr~GGliv~DNvl~  169 (219)
T COG4122         128 -LLDGSFDLVFID---ADKADYPEYLERALPLLRPGGLIVADNVLF  169 (219)
T ss_pred             -ccCCCccEEEEe---CChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence             246799999985   667888999999999999999887764433

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.04  E-value=1.4e-09  Score=92.15  Aligned_cols=97  Identities=20%  Similarity=0.225  Sum_probs=74.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +.+|||++||+|..|+.+++. ++ +|+++|+ +++++.+++|++.|+.            .++.+...|.....  .. 
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------------~~~~v~~~Da~~~l--~~-  122 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------------ENEKVFNKDANALL--HE-  122 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CceEEEhhhHHHHH--hh-
Confidence            468999999999999999875 43 6999999 8899999999999964            23455554443221  11 


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ..+||+|+.. + |  .....++....+.++++|.++++
T Consensus       123 ~~~fD~V~lD-P-~--Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        123 ERKFDVVDID-P-F--GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             cCCCCEEEEC-C-C--CCcHHHHHHHHHHhcCCCEEEEE
Confidence            3579999994 4 3  55578888877778999999999

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.03  E-value=5.2e-09  Score=82.32  Aligned_cols=131  Identities=17%  Similarity=0.108  Sum_probs=87.3

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhh--cc-C
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI--SQ-M  115 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~--~~-~  115 (205)
                      .....|.+|+...        ...++.+||..|||.|.-.+.+|..|.+|+++|+ +.+++.+.+   .|+...  .+ .
T Consensus        27 ~pnp~L~~~~~~l--------~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~   95 (226)
T PRK13256         27 SPNEFLVKHFSKL--------NINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS---QNTINYEVIHGN   95 (226)
T ss_pred             CCCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH---HcCCCcceeccc
Confidence            3466777777553        1225679999999999999999999999999999 668777644   221110  00 0


Q ss_pred             CCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       116 ~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .........+++...|+-+........++||+|+-.-++..  ++....-.+.+.++|+|||.+++..
T Consensus        96 ~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256         96 DYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             ccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            00011234678888666654321122358999876655543  5667788999999999999866654

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=3.7e-09  Score=79.13  Aligned_cols=128  Identities=17%  Similarity=0.179  Sum_probs=90.2

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCC
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (205)
                      .+..|.+.|+.....-    .....+-++|||||+|.++-.+++. +  +-+.+||+ |++++...+.++.|+.      
T Consensus        24 DTFlLlDaLekd~~eL----~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------   93 (209)
T KOG3191|consen   24 DTFLLLDALEKDAAEL----KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------   93 (209)
T ss_pred             hhhHHHHHHHHHHHHH----hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC------
Confidence            3666777776542100    0001457999999999999999876 3  34899999 8999999999999964      


Q ss_pred             CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC---------------------cChHhHHHHHHHhhCCCc
Q 028673          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------------------HLLEPLLQTIFALSGPKT  175 (205)
Q Consensus       117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~---------------------~~~~~ll~~~~~~l~~~g  175 (205)
                             .+++...|....-    .+++.|+++.++++--.                     +..+.++..+..+|+|.|
T Consensus        94 -------~~~~V~tdl~~~l----~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~G  162 (209)
T KOG3191|consen   94 -------HIDVVRTDLLSGL----RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRG  162 (209)
T ss_pred             -------ccceeehhHHhhh----ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCc
Confidence                   3555554443321    23688988888765331                     125578888888999999


Q ss_pred             EEEEEEeeccchhH
Q 028673          176 TILVMFSLSMFSLT  189 (205)
Q Consensus       176 ~~~i~~~~r~~~~~  189 (205)
                      .+|+..-.++...+
T Consensus       163 v~Ylv~~~~N~p~e  176 (209)
T KOG3191|consen  163 VFYLVALRANKPKE  176 (209)
T ss_pred             eEEeeehhhcCHHH
Confidence            99999988777554

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=5.5e-09  Score=82.39  Aligned_cols=103  Identities=17%  Similarity=0.054  Sum_probs=81.1

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+|.+|||.|.|+|.++.++|.. |.  +|+..|+ ++.++.|++|++..+.           .+++.....|..+..
T Consensus        91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----------~d~v~~~~~Dv~~~~  159 (256)
T COG2519          91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----------GDRVTLKLGDVREGI  159 (256)
T ss_pred             CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----------ccceEEEeccccccc
Confidence            4557899999999999999999974 44  6999999 8899999999998754           344666665544433


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                         . ...||.|+.     +...+...++.+...|+|||.+.+-.+.
T Consensus       160 ---~-~~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         160 ---D-EEDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             ---c-ccccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence               1 238998887     3456778999999999999998777663

>PRK00811 spermidine synthase; Provisional

Probab=99.01  E-value=2.8e-09  Score=87.00  Aligned_cols=110  Identities=14%  Similarity=0.018  Sum_probs=75.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++||+||||+|..+..+.+. + .+|+++|+ +++++.+++++.......       ...+++++...|....-  ..
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-------~~d~rv~v~~~Da~~~l--~~  146 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-------YDDPRVELVIGDGIKFV--AE  146 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-------ccCCceEEEECchHHHH--hh
Confidence            4579999999999999988876 4 46999999 889999999876432100       01346777775543321  11


Q ss_pred             CCCCccEEEEc--ccccCCc--ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~--d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..++||+|++.  ++.....  ....+++.+++.|+|||.+++-..
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            35689999984  2211111  125788999999999999887543

>TIGR00478 tly hemolysin TlyA family protein

Probab=99.00  E-value=7.3e-09  Score=81.71  Aligned_cols=114  Identities=18%  Similarity=0.151  Sum_probs=74.0

Q ss_pred             cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHH-HHHHHHHhhhhhc
Q 028673           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL-LKRNVEWNTSRIS  113 (205)
Q Consensus        37 ~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~-~~~n~~~n~~~~~  113 (205)
                      .+..++.-|.+.+...       ...+++++|||+|||||.++..+++.|+ +|+++|. ++++.. ++.+.+-..    
T Consensus        55 ~vsr~~~kL~~~l~~~-------~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~----  123 (228)
T TIGR00478        55 FVSRGGEKLKEALEEF-------NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKV----  123 (228)
T ss_pred             hhhhhHHHHHHHHHhc-------CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeE----
Confidence            5677888899888775       3456889999999999999999999987 5999999 655543 333211000    


Q ss_pred             cCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       114 ~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                              .....+...+|.+..   ..-..+|++++|        +..++..+.+++++ |.+++-.
T Consensus       124 --------~~~~ni~~~~~~~~~---~d~~~~DvsfiS--------~~~~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       124 --------LERTNIRYVTPADIF---PDFATFDVSFIS--------LISILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             --------eecCCcccCCHhHcC---CCceeeeEEEee--------hHhHHHHHHHHhCc-CeEEEEc
Confidence                    011122244455442   112367777665        22368888889988 6655444

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.99  E-value=3.6e-09  Score=81.67  Aligned_cols=96  Identities=18%  Similarity=0.204  Sum_probs=67.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+.+|||+|||+|..+..+++. +.+++++|. +++++.++.    +               ++.+...+..+... ...
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~---------------~~~~~~~d~~~~l~-~~~   72 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R---------------GVNVIQGDLDEGLE-AFP   72 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c---------------CCeEEEEEhhhccc-ccC
Confidence            4679999999999998888754 557999999 777776643    1               13455555443110 123


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +++||+|+++.++++..+...+++.+.+.++   .++++.+
T Consensus        73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p  110 (194)
T TIGR02081        73 DKSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFP  110 (194)
T ss_pred             CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcC
Confidence            4689999999999998888888887776654   4555544

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.98  E-value=3.8e-09  Score=85.14  Aligned_cols=76  Identities=20%  Similarity=0.249  Sum_probs=60.3

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.+++++...              +++++...|..+..    
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~--------------~~v~ii~~D~~~~~----   88 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA--------------GNVEIIEGDALKVD----   88 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC--------------CCEEEEEeccccCC----
Confidence            346789999999999999999999889999999 77999988876532              35788887665542    


Q ss_pred             CCCCccEEEEcccccC
Q 028673          141 VAPPFDYIIGTDVVYA  156 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~  156 (205)
                       .+.||.|++|.+++.
T Consensus        89 -~~~~d~Vv~NlPy~i  103 (258)
T PRK14896         89 -LPEFNKVVSNLPYQI  103 (258)
T ss_pred             -chhceEEEEcCCccc
Confidence             235899999888654

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.98  E-value=2.2e-09  Score=83.02  Aligned_cols=97  Identities=21%  Similarity=0.166  Sum_probs=70.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHH--hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .+|.+|+|+.||.|..++.+|+  .++.|+++|+ |.+++.+++|++.|+.           .+++.+...|..+...  
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----------~~~i~~~~~D~~~~~~--  166 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----------ENRIEVINGDAREFLP--  166 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------------TTTEEEEES-GGG-----
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----------CCeEEEEcCCHHHhcC--
Confidence            3578999999999999999999  5667999999 8999999999999965           4678888877665532  


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                        ...||.|+++-+    .....++..+..+++++|.+-
T Consensus       167 --~~~~drvim~lp----~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  167 --EGKFDRVIMNLP----ESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             --TT-EEEEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred             --ccccCEEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence              568999999732    333467777888888888653

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.96  E-value=8.8e-09  Score=82.08  Aligned_cols=99  Identities=18%  Similarity=0.121  Sum_probs=76.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ..++|+|+|+|+|..++.+++.  +.+++..|.|++++.+++   .               +++++...|+-+.     .
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~---~---------------~rv~~~~gd~f~~-----~  156 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE---A---------------DRVEFVPGDFFDP-----L  156 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH---T---------------TTEEEEES-TTTC-----C
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc---c---------------cccccccccHHhh-----h
Confidence            3468999999999999999987  457999999998888877   1               4789999776622     2


Q ss_pred             CCCccEEEEcccccCCc--ChHhHHHHHHHhhCCC--cEEEEEEeeccc
Q 028673          142 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPK--TTILVMFSLSMF  186 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~--g~~~i~~~~r~~  186 (205)
                      +. +|+++.+.++++..  ....+++.+++.++||  |+++|.......
T Consensus       157 P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~  204 (241)
T PF00891_consen  157 PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD  204 (241)
T ss_dssp             SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred             cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence            33 99999999998754  4558999999999988  999999876433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.96  E-value=5.7e-09  Score=90.01  Aligned_cols=100  Identities=18%  Similarity=0.212  Sum_probs=71.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC------CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      +++.|+|+|||+|.++..+++.+      .+|++++. +.++..++..++.|+.           .++|+++..|..+.+
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----------~~~V~vi~~d~r~v~  254 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----------GDKVTVIHGDMREVE  254 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----------TTTEEEEES-TTTSC
T ss_pred             cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----------CCeEEEEeCcccCCC
Confidence            46899999999999999888775      26999999 6677777776677753           578999997766654


Q ss_pred             CcccCCCCccEEEEccccc--CCcChHhHHHHHHHhhCCCcEEE
Q 028673          137 HIKAVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y--~~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                          .+.+.|+||+--.-+  ..+..+..+....+.|+|+|.++
T Consensus       255 ----lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  255 ----LPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             ----HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             ----CCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence                245999998743222  23466777888889999998754

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.94  E-value=7.8e-09  Score=87.22  Aligned_cols=99  Identities=20%  Similarity=0.229  Sum_probs=77.3

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           65 GKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      +.+|||+.||+|..|+.+++.  |+ +|+++|+ +++++.+++|++.|+.            .++.+...|.....  ..
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------------~~~~v~~~Da~~~l--~~  110 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------------ENIEVPNEDAANVL--RY  110 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEchhHHHHH--HH
Confidence            358999999999999999987  55 5999999 8899999999999964            24566665444331  11


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ...+||+|.. |+ |  ....+++..+.+.++++|.++++.
T Consensus       111 ~~~~fDvIdl-DP-f--Gs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       111 RNRKFHVIDI-DP-F--GTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             hCCCCCEEEe-CC-C--CCcHHHHHHHHHhcccCCEEEEEe
Confidence            1357999988 66 5  344688999999999999999984

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.94  E-value=1.3e-08  Score=83.49  Aligned_cols=80  Identities=19%  Similarity=0.201  Sum_probs=63.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|.++..++..+.+|+++|+ +.+++.+++++..++.           .+++++...|..+.+    
T Consensus        34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-----------~~~v~ii~~Dal~~~----   98 (294)
T PTZ00338         34 IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-----------ASKLEVIEGDALKTE----   98 (294)
T ss_pred             CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-----------CCcEEEEECCHhhhc----
Confidence            346789999999999999999999889999999 7899999999876532           246888887665433    


Q ss_pred             CCCCccEEEEcccccCC
Q 028673          141 VAPPFDYIIGTDVVYAE  157 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~  157 (205)
                       ..+||.|++|-+++-.
T Consensus        99 -~~~~d~VvaNlPY~Is  114 (294)
T PTZ00338         99 -FPYFDVCVANVPYQIS  114 (294)
T ss_pred             -ccccCEEEecCCcccC
Confidence             2468999987666643

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.92  E-value=1.4e-08  Score=82.51  Aligned_cols=76  Identities=16%  Similarity=0.144  Sum_probs=58.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++.+|||+|||+|.++..+++.+.+|+++|. +++++.+++++..               +++.+...|+.+... .  
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---------------~~v~~i~~D~~~~~~-~--  102 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---------------DNLTIIEGDALKVDL-S--  102 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---------------CceEEEEChhhcCCH-H--
Confidence            46789999999999999999999889999999 7899998876532               257888877665431 1  


Q ss_pred             CCCccEEEEcccccC
Q 028673          142 APPFDYIIGTDVVYA  156 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~  156 (205)
                      ...+|.|++|.+++.
T Consensus       103 ~~~~~~vv~NlPY~i  117 (272)
T PRK00274        103 ELQPLKVVANLPYNI  117 (272)
T ss_pred             HcCcceEEEeCCccc
Confidence            111589999877543

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=9.8e-09  Score=88.08  Aligned_cols=126  Identities=15%  Similarity=0.070  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (205)
                      +..|.++....       .....+.+|||+-||.|.+|+.+|+...+|+++|+ +++++.|++|++.|+.          
T Consensus       278 ~ekl~~~a~~~-------~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i----------  340 (432)
T COG2265         278 AEKLYETALEW-------LELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI----------  340 (432)
T ss_pred             HHHHHHHHHHH-------HhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC----------
Confidence            44555555554       23335679999999999999999999999999999 8999999999999975          


Q ss_pred             CCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       121 ~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                        .|+++...+-.+..........||.|+..++=  ...-+.+++.+.++ +|..++|++...-....+
T Consensus       341 --~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR--~G~~~~~lk~l~~~-~p~~IvYVSCNP~TlaRD  404 (432)
T COG2265         341 --DNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR--AGADREVLKQLAKL-KPKRIVYVSCNPATLARD  404 (432)
T ss_pred             --CcEEEEeCCHHHHhhhccccCCCCEEEECCCC--CCCCHHHHHHHHhc-CCCcEEEEeCCHHHHHHH
Confidence              45788775554443222224578999986432  24445777777665 477788988765444433

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.91  E-value=1.1e-08  Score=81.60  Aligned_cols=103  Identities=16%  Similarity=0.041  Sum_probs=79.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~  138 (205)
                      .-++|||+|+++|+.++.+|+.   +.+|+.+|. ++..+.|++|++..+.           .++|++...+..+.- .+
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----------~~~I~~~~G~a~e~L~~l  147 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----------AHKIDFREGPALPVLDQM  147 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeccHHHHHHHH
Confidence            4579999999999999999865   458999999 7889999999998864           467888886554321 11


Q ss_pred             cc---CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          139 KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       139 ~~---~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ..   ..++||+|+.-   .....+...++.+.+++++||.+++-
T Consensus       148 ~~~~~~~~~fD~iFiD---adK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        148 IEDGKYHGTFDFIFVD---ADKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             HhccccCCcccEEEec---CCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence            11   13589999985   44677788888889999999987654

>PRK04148 hypothetical protein; Provisional

Probab=98.90  E-value=8.1e-09  Score=74.46  Aligned_cols=80  Identities=21%  Similarity=0.230  Sum_probs=55.0

Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccH-HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCC
Q 028673           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL  121 (205)
Q Consensus        44 ~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl-~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~  121 (205)
                      .+++|+..+.       ...++++|||+|||+|. ++..+++.|.+|+++|+ +++++.++.+    +            
T Consensus         3 ~i~~~l~~~~-------~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~------------   59 (134)
T PRK04148          3 TIAEFIAENY-------EKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G------------   59 (134)
T ss_pred             HHHHHHHHhc-------ccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C------------
Confidence            3677776652       23356899999999996 99999999999999999 7776666543    2            


Q ss_pred             CCceEEEEeecCCCCCcccCCCCccEEEEc
Q 028673          122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGT  151 (205)
Q Consensus       122 ~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~  151 (205)
                         +++...|+.+....  .-..+|+|.+.
T Consensus        60 ---~~~v~dDlf~p~~~--~y~~a~liysi   84 (134)
T PRK04148         60 ---LNAFVDDLFNPNLE--IYKNAKLIYSI   84 (134)
T ss_pred             ---CeEEECcCCCCCHH--HHhcCCEEEEe
Confidence               36666565544311  12356666664

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.89  E-value=8.4e-09  Score=79.53  Aligned_cols=106  Identities=18%  Similarity=0.192  Sum_probs=79.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      +..-|||+|||||+.|-.+...|...+++|+ +.|++.+.+.  .-               .-++...|.++.  ++..+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~--e~---------------egdlil~DMG~G--lpfrp  110 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER--EL---------------EGDLILCDMGEG--LPFRP  110 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh--hh---------------hcCeeeeecCCC--CCCCC
Confidence            4567999999999999999999988999999 8899988861  11               124566666744  44557


Q ss_pred             CCccEEEEcccccCC-------cC----hHhHHHHHHHhhCCCcEEEEEEeeccchh
Q 028673          143 PPFDYIIGTDVVYAE-------HL----LEPLLQTIFALSGPKTTILVMFSLSMFSL  188 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~-------~~----~~~ll~~~~~~l~~~g~~~i~~~~r~~~~  188 (205)
                      +.||-+|+-..+.+.       +.    +..++.++..+++++++.++-+...+...
T Consensus       111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q  167 (270)
T KOG1541|consen  111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ  167 (270)
T ss_pred             CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence            899998877666431       11    33578889999999999998876555543

>TIGR00417 speE spermidine synthase

Probab=98.87  E-value=2.3e-08  Score=81.10  Aligned_cols=112  Identities=13%  Similarity=-0.021  Sum_probs=74.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++||+||||+|..+..+++..  .+|+++|+ +++++.+++++......        ....++++...|..+.  ...
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~--------~~~~~v~i~~~D~~~~--l~~  141 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS--------YDDPRVDLQIDDGFKF--LAD  141 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc--------ccCCceEEEECchHHH--HHh
Confidence            34699999999999888887764  46999999 78999999887543210        0123556655332211  111


Q ss_pred             CCCCccEEEEcccccC--CcC--hHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYA--EHL--LEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~--~~~--~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ...+||+|++...-..  ...  ...+++.++++|+|||.+++......
T Consensus       142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~  190 (270)
T TIGR00417       142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPW  190 (270)
T ss_pred             CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcc
Confidence            2468999998533111  111  35788999999999999988754333

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.86  E-value=3.4e-09  Score=82.73  Aligned_cols=104  Identities=16%  Similarity=0.183  Sum_probs=71.1

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      +.++|+|||+|..++.+|..-.+|++||. ++|++.+++.-...-.    ..       ......   .+...+...+++
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~----~t-------~~~ms~---~~~v~L~g~e~S  100 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC----HT-------PSTMSS---DEMVDLLGGEES  100 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc----cC-------Cccccc---cccccccCCCcc
Confidence            37999999999989999988778999999 7799977764222110    00       011111   111122223679


Q ss_pred             ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .|+|+++-++|+.+. +.+.+.+.+.|++.|.++.+-..+
T Consensus       101 VDlI~~Aqa~HWFdl-e~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  101 VDLITAAQAVHWFDL-ERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             eeeehhhhhHHhhch-HHHHHHHHHHcCCCCCEEEEEEcc
Confidence            999999999987654 899999999998777554444444

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.85  E-value=2.2e-08  Score=78.29  Aligned_cols=121  Identities=17%  Similarity=0.327  Sum_probs=77.8

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhh------------------hccCCCC
Q 028673           60 PSKLKGKRVIELGAGCGVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSR------------------ISQMNPG  118 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~------------------~~~~~~~  118 (205)
                      .+.++++.+||+||-+|.+++.+|+. |++ |+++|+ +..++.|++|++.-...                  +++.+..
T Consensus        54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a  133 (288)
T KOG2899|consen   54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA  133 (288)
T ss_pred             ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence            35667889999999999999999976 776 999999 66889999988642110                  0000000


Q ss_pred             -----CCCCCceEEEEeec--CCCCCcccCCCCccEEEEcccccC------CcChHhHHHHHHHhhCCCcEEEEE
Q 028673          119 -----SDLLGSIQAVELDW--GNEDHIKAVAPPFDYIIGTDVVYA------EHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       119 -----~~~~~~i~~~~~dw--~~~~~~~~~~~~fD~Ii~~d~~y~------~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                           .+...++.+.....  ...+-+....+.||+|+|-.+--+      .+-+..+++.+.++|.|||.+++.
T Consensus       134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence                 01111121111000  001111234578999998776533      445778999999999999988775

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.84  E-value=5.1e-08  Score=82.00  Aligned_cols=146  Identities=18%  Similarity=0.143  Sum_probs=87.3

Q ss_pred             EEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-c
Q 028673           17 EVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-I   95 (205)
Q Consensus        17 ~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~   95 (205)
                      .+.+..+++...++++.  ..-+.....|.+++....       ...++ +||||-||+|.+|+.+|+.+.+|+++|. +
T Consensus       159 ~~~~~~~~~~~~~~sFf--QvN~~~~~~l~~~~~~~l-------~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~  228 (352)
T PF05958_consen  159 EIQDKGLSFRISPGSFF--QVNPEQNEKLYEQALEWL-------DLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVE  228 (352)
T ss_dssp             -ECCCTEEEEEETTS-----SBHHHHHHHHHHHHHHC-------TT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-H
T ss_pred             eeeccceEEEECCCcCc--cCcHHHHHHHHHHHHHHh-------hcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCH
Confidence            34455566666665433  223334556666665542       22233 7999999999999999999999999999 8


Q ss_pred             chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-------------cccCCCCccEEEEcccccCCcChHh
Q 028673           96 EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-------------IKAVAPPFDYIIGTDVVYAEHLLEP  162 (205)
Q Consensus        96 ~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-------------~~~~~~~fD~Ii~~d~~y~~~~~~~  162 (205)
                      ++++.|++|++.|+.            .++++...+-.+...             .......+|+|+.-++=-  ...+.
T Consensus       229 ~av~~A~~Na~~N~i------------~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~--G~~~~  294 (352)
T PF05958_consen  229 EAVEDARENAKLNGI------------DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRA--GLDEK  294 (352)
T ss_dssp             HHHHHHHHHHHHTT--------------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT---SCHH
T ss_pred             HHHHHHHHHHHHcCC------------CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCC--CchHH
Confidence            899999999999976            467777654332211             011123689888854322  34456


Q ss_pred             HHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          163 LLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       163 ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      +++.+.+   +.-.+|++-.......+
T Consensus       295 ~~~~~~~---~~~ivYvSCnP~tlaRD  318 (352)
T PF05958_consen  295 VIELIKK---LKRIVYVSCNPATLARD  318 (352)
T ss_dssp             HHHHHHH---SSEEEEEES-HHHHHHH
T ss_pred             HHHHHhc---CCeEEEEECCHHHHHHH
Confidence            6666654   35677887665554443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.83  E-value=1.1e-08  Score=79.96  Aligned_cols=108  Identities=16%  Similarity=0.188  Sum_probs=79.5

Q ss_pred             eEEEeCCCccHHHHHHHHhC----CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cccc
Q 028673           67 RVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA  140 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~  140 (205)
                      +|||+|||.|-...-+.+-.    -.|.+.|. |.+++..++|...+.             .++.....|...+. ..+.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------------~~~~afv~Dlt~~~~~~~~  140 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-------------SRVEAFVWDLTSPSLKEPP  140 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-------------hhhcccceeccchhccCCC
Confidence            79999999998777776653    35999999 889999998876552             23444444444443 2233


Q ss_pred             CCCCccEEEEccccc--CCcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          141 VAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y--~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      ..+++|+|.+--++-  +++.....++.+.+++||||.+++.+..|+-.
T Consensus       141 ~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dl  189 (264)
T KOG2361|consen  141 EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDL  189 (264)
T ss_pred             CcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchH
Confidence            467899997765553  36678899999999999999999987766553

>PRK03612 spermidine synthase; Provisional

Probab=98.83  E-value=1.8e-08  Score=88.88  Aligned_cols=116  Identities=18%  Similarity=0.096  Sum_probs=76.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      +.++|||+|||+|..+..+++..  .+|+++|+ +++++.+++|...+.....     .-..+++++...|-.+.  ...
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-----~~~dprv~vi~~Da~~~--l~~  369 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG-----ALDDPRVTVVNDDAFNW--LRK  369 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc-----ccCCCceEEEEChHHHH--HHh
Confidence            46799999999999998888875  47999999 8899999986432211000     01124677777554322  112


Q ss_pred             CCCCccEEEEcccccCCc-----ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          141 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ..++||+|++...-....     .-+++++.++++|+|||.+++.......
T Consensus       370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~  420 (521)
T PRK03612        370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF  420 (521)
T ss_pred             CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCccc
Confidence            246899999963221111     1236889999999999999886544433

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.82  E-value=5.5e-08  Score=77.14  Aligned_cols=96  Identities=23%  Similarity=0.182  Sum_probs=75.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+..++||||+|.|-++..++..-.+|++||. +.|...+++    .+.              -.+...+|.+.      
T Consensus        93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg~--------------~vl~~~~w~~~------  148 (265)
T PF05219_consen   93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KGF--------------TVLDIDDWQQT------  148 (265)
T ss_pred             ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CCC--------------eEEehhhhhcc------
Confidence            35678999999999999999998889999999 556444433    322              12233446543      


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +.+||+|.|-.++=....+..|++.+++.|+|+|.++++.-
T Consensus       149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvV  189 (265)
T PF05219_consen  149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVV  189 (265)
T ss_pred             CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence            35899999999999899999999999999999999998854

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.79  E-value=7.2e-08  Score=76.89  Aligned_cols=106  Identities=19%  Similarity=0.141  Sum_probs=74.1

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      +..+|.+|||-|.|+|.++.++++. |  .+|+..|. ++..+.|++|++.++.           .+++++...|..+.-
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----------~~~v~~~~~Dv~~~g  105 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----------DDNVTVHHRDVCEEG  105 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----------CTTEEEEES-GGCG-
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----------CCCceeEecceeccc
Confidence            4558999999999999999999975 3  47999999 8899999999999865           467899988875422


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhh-CCCcEEEEEEe
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTILVMFS  182 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l-~~~g~~~i~~~  182 (205)
                      ........+|.|+. |    ...+...+..+.+.| ++||.+.+-.|
T Consensus       106 ~~~~~~~~~DavfL-D----lp~Pw~~i~~~~~~L~~~gG~i~~fsP  147 (247)
T PF08704_consen  106 FDEELESDFDAVFL-D----LPDPWEAIPHAKRALKKPGGRICCFSP  147 (247)
T ss_dssp             -STT-TTSEEEEEE-E----SSSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred             ccccccCcccEEEE-e----CCCHHHHHHHHHHHHhcCCceEEEECC
Confidence            11122467998877 3    234556777778888 78887655443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.77  E-value=8.7e-08  Score=79.05  Aligned_cols=118  Identities=19%  Similarity=0.197  Sum_probs=88.5

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (205)
                      ...||+.+..-       ....+|..|||=-||||-+-+.+...|++++++|+ ..|++-++.|++.-+.          
T Consensus       182 ~P~lAR~mVNL-------a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i----------  244 (347)
T COG1041         182 DPRLARAMVNL-------ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI----------  244 (347)
T ss_pred             CHHHHHHHHHH-------hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc----------
Confidence            45677777654       34557889999999999999999999999999999 6799999999988753          


Q ss_pred             CCCceEEEEe-ecCCCCCcccCCCCccEEEEcccccCCc----------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          121 LLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVVYAEH----------LLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       121 ~~~~i~~~~~-dw~~~~~~~~~~~~fD~Ii~~d~~y~~~----------~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                        ....+... |..+.   +.....+|.|+. |+.|-..          ....+++.+.+.|++||.+.+..+
T Consensus       245 --~~~~~~~~~Da~~l---pl~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         245 --EDYPVLKVLDATNL---PLRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             --CceeEEEecccccC---CCCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence              12222222 33333   333446999887 6666532          266788888999999999999988

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.76  E-value=7.4e-08  Score=74.21  Aligned_cols=109  Identities=16%  Similarity=0.121  Sum_probs=76.5

Q ss_pred             eEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-----
Q 028673           67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-----  138 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-----  138 (205)
                      +|||||||||--+..+|+.-.  ...-+|. ++.+..++..+...+..           ....-..+|.......     
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-----------Nv~~P~~lDv~~~~w~~~~~~   96 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-----------NVRPPLALDVSAPPWPWELPA   96 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-----------ccCCCeEeecCCCCCcccccc
Confidence            699999999999999998744  5778899 55666777766655431           1112233443333111     


Q ss_pred             ccCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          139 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      .....+||.|++..+++-.  +..+.|++...++|++||.+++--+....
T Consensus        97 ~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~  146 (204)
T PF06080_consen   97 PLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD  146 (204)
T ss_pred             ccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC
Confidence            1135689999999999874  45678999999999999998888665443

The function of this family is unknown.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=7.5e-08  Score=82.55  Aligned_cols=125  Identities=13%  Similarity=0.078  Sum_probs=93.6

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (205)
                      ++.+|-.++..+.       ....++.++|+.||||.+|+.+|+...+|+++++ +++++-|+.|+..|++         
T Consensus       367 ~aevLys~i~e~~-------~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi---------  430 (534)
T KOG2187|consen  367 AAEVLYSTIGEWA-------GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI---------  430 (534)
T ss_pred             HHHHHHHHHHHHh-------CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc---------
Confidence            4677778887763       3445688999999999999999999999999999 8999999999999987         


Q ss_pred             CCCCceEEEEeecCCCCCcccCC--CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          120 DLLGSIQAVELDWGNEDHIKAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       120 ~~~~~i~~~~~dw~~~~~~~~~~--~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                         .+++++...-.+........  ..-+++...|+-- ......+++.+..+-++.-.+|++-..+.
T Consensus       431 ---sNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~~t  494 (534)
T KOG2187|consen  431 ---SNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNPHT  494 (534)
T ss_pred             ---cceeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCHHH
Confidence               57788875333332111111  2345455445443 56778899999998888899999877664

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.75  E-value=1.3e-07  Score=76.04  Aligned_cols=75  Identities=19%  Similarity=0.236  Sum_probs=55.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|.++..+++.+.+|+++|. +.+++.++.++...              .++++...|..+...   
T Consensus        27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~--------------~~v~v~~~D~~~~~~---   89 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLY--------------ERLEVIEGDALKVDL---   89 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcC--------------CcEEEEECchhcCCh---
Confidence            346789999999999999999999989999999 77888888765321              357777766554431   


Q ss_pred             CCCCcc---EEEEccccc
Q 028673          141 VAPPFD---YIIGTDVVY  155 (205)
Q Consensus       141 ~~~~fD---~Ii~~d~~y  155 (205)
                        ..+|   +|+++-+++
T Consensus        90 --~~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        90 --PDFPKQLKVVSNLPYN  105 (253)
T ss_pred             --hHcCCcceEEEcCChh
Confidence              1455   788875533

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.75  E-value=7.4e-08  Score=79.84  Aligned_cols=106  Identities=20%  Similarity=0.123  Sum_probs=80.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .|.+|+|+-||.|..++.+|++|+. |+++|+ |.+++.+++|+++|+.           ...+....+|-....   ..
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----------~~~v~~i~gD~rev~---~~  253 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----------EGRVEPILGDAREVA---PE  253 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----------cceeeEEeccHHHhh---hc
Confidence            4889999999999999999999987 999999 8999999999999975           345777776655443   22


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      .+.+|-|+++-+-    ....++....++++++|.+..-...+...
T Consensus       254 ~~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~  295 (341)
T COG2520         254 LGVADRIIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPEDD  295 (341)
T ss_pred             cccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence            2689999998333    33456666667777788766655444443

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.73  E-value=4.7e-08  Score=76.76  Aligned_cols=128  Identities=20%  Similarity=0.182  Sum_probs=85.5

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhc--cCCC
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS--QMNP  117 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~--~~~~  117 (205)
                      ....|.+|+...        ....+.+||.-|||.|.-.+.+|..|.+|+++|+ +.+++.+.+   .|+..-.  ....
T Consensus        22 ~~p~L~~~~~~l--------~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~---e~~~~~~~~~~~~   90 (218)
T PF05724_consen   22 PNPALVEYLDSL--------ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFE---ENNLEPTVTSVGG   90 (218)
T ss_dssp             STHHHHHHHHHH--------TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHH---HCTTEEECTTCTT
T ss_pred             CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHH---HhccCCCcccccc
Confidence            377888888762        1235679999999999999999999999999999 677777632   2211000  0000


Q ss_pred             -CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEE-EEEE
Q 028673          118 -GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTI-LVMF  181 (205)
Q Consensus       118 -~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~-~i~~  181 (205)
                       .....++|++...|.-+...  ...++||+|+-.-++..  ++..+.-.+.+.++|+|||.+ +++.
T Consensus        91 ~~~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l  156 (218)
T PF05724_consen   91 FKRYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL  156 (218)
T ss_dssp             EEEETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred             eeeecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence             00123467777755544321  12247999987665543  677888999999999999993 4443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK01581 speE spermidine synthase; Validated

Probab=98.73  E-value=8.3e-08  Score=80.10  Aligned_cols=107  Identities=19%  Similarity=0.112  Sum_probs=72.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHH---HhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVE---WNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~---~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++||++|||+|.....+.+..  .+|+++|+ +++++.++....   .|...        -..+++++...|..+.- 
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~--------~~DpRV~vvi~Da~~fL-  220 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA--------FFDNRVNVHVCDAKEFL-  220 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc--------CCCCceEEEECcHHHHH-
Confidence            45799999999998877777764  47999999 789999996311   11100        11357777775544321 


Q ss_pred             cccCCCCccEEEEcccccCCc------C-hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          138 IKAVAPPFDYIIGTDVVYAEH------L-LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~------~-~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                       ....++||+|++. +. .+.      . -..+++.+++.|+|||.+++...
T Consensus       221 -~~~~~~YDVIIvD-l~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        221 -SSPSSLYDVIIID-FP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             -HhcCCCccEEEEc-CC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence             2234689999985 22 211      1 24688999999999999877644

>PLN02366 spermidine synthase

Probab=98.68  E-value=2e-07  Score=76.86  Aligned_cols=108  Identities=15%  Similarity=0.011  Sum_probs=73.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++||++|||.|.....+++..  .+|+++|+ +++++.+++.+......        -..+++++...|-...-. ..
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--------~~dpRv~vi~~Da~~~l~-~~  161 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--------FDDPRVNLHIGDGVEFLK-NA  161 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--------cCCCceEEEEChHHHHHh-hc
Confidence            46799999999999988888873  36999999 77999999987542110        113577887755322110 01


Q ss_pred             CCCCccEEEEcccccCCc-----ChHhHHHHHHHhhCCCcEEEEEE
Q 028673          141 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ..++||+|++ |..-...     .-..+++.++++|+|||.++.-.
T Consensus       162 ~~~~yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        162 PEGTYDAIIV-DSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             cCCCCCEEEE-cCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            1458999997 3321111     13468899999999999986643

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.67  E-value=1e-07  Score=72.65  Aligned_cols=107  Identities=18%  Similarity=0.181  Sum_probs=71.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCE-----------EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEee
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCN-----------VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD  131 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~-----------v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~d  131 (205)
                      ++..|||--||+|.+.+.++..+..           ++++|+ +++++.++.|++..+.           ...+.+...|
T Consensus        28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----------~~~i~~~~~D   96 (179)
T PF01170_consen   28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----------EDYIDFIQWD   96 (179)
T ss_dssp             TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------------CGGEEEEE--
T ss_pred             CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----------CCceEEEecc
Confidence            5679999999999999998876443           679999 8899999999988754           3457777766


Q ss_pred             cCCCCCcccCCCCccEEEEcccccCC--------cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          132 WGNEDHIKAVAPPFDYIIGTDVVYAE--------HLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       132 w~~~~~~~~~~~~fD~Ii~~d~~y~~--------~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..+..   .....+|.|++++++-..        ..+..+++.+.+.+++ ..+++....+.
T Consensus        97 ~~~l~---~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~  154 (179)
T PF01170_consen   97 ARELP---LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRE  154 (179)
T ss_dssp             GGGGG---GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCC
T ss_pred             hhhcc---cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHH
Confidence            55543   335689999998877552        2234566677777777 44555444333

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.65  E-value=5.3e-08  Score=72.72  Aligned_cols=77  Identities=21%  Similarity=0.055  Sum_probs=55.8

Q ss_pred             eEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCc
Q 028673           67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF  145 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~f  145 (205)
                      .|+|+.||.|--++.+|+.+.+|+++|+ +.-++.++.|++.-+.           .+++++...||.+..........+
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv-----------~~~I~~i~gD~~~~~~~~~~~~~~   70 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV-----------ADNIDFICGDFFELLKRLKSNKIF   70 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT------------GGGEEEEES-HHHHGGGB------
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCCHHHHHhhccccccc
Confidence            6999999999999999999999999999 8899999999998865           368999999887753222112228


Q ss_pred             cEEEEcccc
Q 028673          146 DYIIGTDVV  154 (205)
Q Consensus       146 D~Ii~~d~~  154 (205)
                      |+|+++++-
T Consensus        71 D~vFlSPPW   79 (163)
T PF09445_consen   71 DVVFLSPPW   79 (163)
T ss_dssp             SEEEE---B
T ss_pred             cEEEECCCC
Confidence            999998765

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.60  E-value=2.1e-07  Score=77.43  Aligned_cols=141  Identities=16%  Similarity=0.075  Sum_probs=81.3

Q ss_pred             ccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccH-HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhc
Q 028673           36 TTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS  113 (205)
Q Consensus        36 ~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl-~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~  113 (205)
                      ..-|--++++..|+...       ....++.+|||||||-|- +.-.....-..++++|+ +++++.|++..+.......
T Consensus        41 fNNwvKs~LI~~~~~~~-------~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~  113 (331)
T PF03291_consen   41 FNNWVKSVLIQKYAKKV-------KQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNN  113 (331)
T ss_dssp             HHHHHHHHHHHHHCHCC-------CCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT
T ss_pred             HhHHHHHHHHHHHHHhh-------hccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccc
Confidence            34577788888887643       122267899999999864 34333333346999999 7789988887743221000


Q ss_pred             cCCCCCCCCCceEEEEeecCCCC---CcccCCCCccEEEEcccccC----CcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          114 QMNPGSDLLGSIQAVELDWGNED---HIKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       114 ~~~~~~~~~~~i~~~~~dw~~~~---~~~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ....  ...-...+...|-....   .......+||+|=+--++|+    .+....+++.+..+|+|||.++.+.+-..
T Consensus       114 ~~~~--~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~  190 (331)
T PF03291_consen  114 SKQY--RFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD  190 (331)
T ss_dssp             -HTS--EECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred             cccc--cccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence            0000  00011233332222110   01111358999988877766    34456799999999999999999987544

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.59  E-value=5.6e-07  Score=66.72  Aligned_cols=119  Identities=13%  Similarity=0.138  Sum_probs=82.8

Q ss_pred             cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEEcC-cchHHHHHHHHHHhhhhh
Q 028673           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRI  112 (205)
Q Consensus        37 ~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~  112 (205)
                      .+=++|-.+|+-|.+..       +.-.|..|||+|.|||.+.-.+.++|.   .++++++ ++....+.+..       
T Consensus        28 aI~PsSs~lA~~M~s~I-------~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------   93 (194)
T COG3963          28 AILPSSSILARKMASVI-------DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------   93 (194)
T ss_pred             eecCCcHHHHHHHHhcc-------CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------
Confidence            45577888888887752       344678999999999999999999875   3999999 77666555432       


Q ss_pred             ccCCCCCCCCCceEEEEeecCCCCC--cccCCCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEE
Q 028673          113 SQMNPGSDLLGSIQAVELDWGNEDH--IKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~dw~~~~~--~~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i  179 (205)
                                +.+.+.+.|--+...  .....+.||.|+++=++-....  --++++.+...+..||.++-
T Consensus        94 ----------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963          94 ----------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             ----------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence                      233444544333321  1123567999999977765433  34788888888888777553

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=6.8e-07  Score=68.62  Aligned_cols=110  Identities=20%  Similarity=0.242  Sum_probs=74.9

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCE---EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-GCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~---v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..+|.+.||+|+|||.++-.+++. |+.   ++++|. ++.++..++|+...-.. ++. ..--...++.+...|-... 
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~-~e~-~~~~~~~~l~ivvGDgr~g-  156 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITT-SES-SSKLKRGELSIVVGDGRKG-  156 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccC-chh-hhhhccCceEEEeCCcccc-
Confidence            557899999999999999888855 443   599999 99999999999865310 000 0001123455555443333 


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                        .....+||.|.+.      .....+.+.+...|+++|++++-..
T Consensus       157 --~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  157 --YAEQAPYDAIHVG------AAASELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             --CCccCCcceEEEc------cCccccHHHHHHhhccCCeEEEeec
Confidence              2345699999876      4556677777778889998877643

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.56  E-value=3.4e-07  Score=70.79  Aligned_cols=109  Identities=14%  Similarity=0.064  Sum_probs=75.9

Q ss_pred             CeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           66 KRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ..+||||||.|-..+.+|+...  .++|+|+ ...+..+...+...+.            .|+.+...|....-.....+
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------------~Nv~~~~~da~~~l~~~~~~   86 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL------------KNVRFLRGDARELLRRLFPP   86 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT------------SSEEEEES-CTTHHHHHSTT
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc------------cceEEEEccHHHHHhhcccC
Confidence            3799999999999999998754  6999999 7778877777776653            58888886655532112235


Q ss_pred             CCccEEEEc--ccccCCc------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          143 PPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       143 ~~fD~Ii~~--d~~y~~~------~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      +++|-|..+  |+-....      .-+.+++.+++.|+|||.+.+..-....
T Consensus        87 ~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y  138 (195)
T PF02390_consen   87 GSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEY  138 (195)
T ss_dssp             TSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHH
T ss_pred             CchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHH
Confidence            688888665  3322211      3458999999999999999888765544

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.55  E-value=4.2e-06  Score=76.47  Aligned_cols=153  Identities=13%  Similarity=0.031  Sum_probs=96.7

Q ss_pred             EEEEEEcCeEEEEEeCCCCccc---cc----cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 028673           13 VINLEVLGHQLQFSQDPNSKHL---GT----TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (205)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~---g~----~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~   85 (205)
                      .+.+.+.....++.-+..+...   |.    ..-+--..||.-|.....      -...+..++|-+||+|.+.+.+|..
T Consensus       138 ~i~~~~~~~~~~l~ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~------w~~~~~~l~DP~CGSGTilIEAa~~  211 (702)
T PRK11783        138 RINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLRSG------WPQEGTPLLDPMCGSGTLLIEAAMM  211 (702)
T ss_pred             EEEEEEeCCEEEEEEECCCCchhhccCccCCCCCCCcHHHHHHHHHHcC------CCCCCCeEEccCCCccHHHHHHHHH
Confidence            4555566666777666543321   11    122223456665554310      1124678999999999999988753


Q ss_pred             C--------------------------------------------CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673           86 G--------------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (205)
Q Consensus        86 g--------------------------------------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (205)
                      +                                            .+++++|+ +++++.++.|+..++.          
T Consensus       212 ~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~----------  281 (702)
T PRK11783        212 AADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGV----------  281 (702)
T ss_pred             HhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCC----------
Confidence            1                                            25899999 8899999999999865          


Q ss_pred             CCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC----cChHhHHHHHHHhhC---CCcEEEEEEee
Q 028673          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSG---PKTTILVMFSL  183 (205)
Q Consensus       121 ~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~---~~g~~~i~~~~  183 (205)
                       .+.+.+...|+.+.... ...++||+|++|+++...    .....+.+.+.+.++   +|+.+++....
T Consensus       282 -~~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~  349 (702)
T PRK11783        282 -AELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSSS  349 (702)
T ss_pred             -CcceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence             34678888777665321 113479999999887542    223344444444433   78887776653

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.50  E-value=7.6e-07  Score=72.64  Aligned_cols=84  Identities=21%  Similarity=0.236  Sum_probs=49.3

Q ss_pred             CCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeecCC-C-CCc
Q 028673           65 GKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGN-E-DHI  138 (205)
Q Consensus        65 ~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~i~~~~~dw~~-~-~~~  138 (205)
                      ..++||+|+|. .+..+..++ .|-+++|||+ +.+++.|++|++.| .+           .++|.+....-.. . ...
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----------~~~I~l~~~~~~~~i~~~i  171 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----------ESRIELRKQKNPDNIFDGI  171 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------------TTTEEEEE--ST-SSTTTS
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----------ccceEEEEcCCccccchhh
Confidence            45899999997 466776665 4789999999 78999999999999 43           5678876643211 1 111


Q ss_pred             ccCCCCccEEEEcccccCCcC
Q 028673          139 KAVAPPFDYIIGTDVVYAEHL  159 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~  159 (205)
                      ....+.||+.+|++++|....
T Consensus       172 ~~~~e~~dftmCNPPFy~s~~  192 (299)
T PF05971_consen  172 IQPNERFDFTMCNPPFYSSQE  192 (299)
T ss_dssp             TT--S-EEEEEE-----SS--
T ss_pred             hcccceeeEEecCCccccChh
Confidence            223468999999999997443

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.46  E-value=9.2e-07  Score=67.61  Aligned_cols=96  Identities=20%  Similarity=0.281  Sum_probs=68.6

Q ss_pred             eEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           67 RVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      +++|+|+|.|.+|+.+|-..  .+|+++|- ..=+..++.-+..-+.            +++.+......+    .....
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------------~nv~v~~~R~E~----~~~~~  114 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------------SNVEVINGRAEE----PEYRE  114 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------------SSEEEEES-HHH----TTTTT
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------------CCEEEEEeeecc----cccCC
Confidence            79999999999999999764  46999998 5434444444443332            367888865554    22467


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +||+|++-    ....+..+++.+..+++++|.+++.-.
T Consensus       115 ~fd~v~aR----Av~~l~~l~~~~~~~l~~~G~~l~~KG  149 (184)
T PF02527_consen  115 SFDVVTAR----AVAPLDKLLELARPLLKPGGRLLAYKG  149 (184)
T ss_dssp             -EEEEEEE----SSSSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             CccEEEee----hhcCHHHHHHHHHHhcCCCCEEEEEcC
Confidence            89999985    456788999999999999998766544

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.43  E-value=1.2e-06  Score=65.63  Aligned_cols=83  Identities=11%  Similarity=-0.016  Sum_probs=62.5

Q ss_pred             EEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHH
Q 028673           90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIF  168 (205)
Q Consensus        90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~  168 (205)
                      +++|. ++|++.++++......         ....++++...|..+.   +..+++||+|+++.++.+..+...+++.++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~---------~~~~~i~~~~~d~~~l---p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~   68 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKAR---------SCYKCIEWIEGDAIDL---PFDDCEFDAVTMGYGLRNVVDRLRAMKEMY   68 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccc---------cCCCceEEEEechhhC---CCCCCCeeEEEecchhhcCCCHHHHHHHHH
Confidence            47999 7899999876543211         0123577877655443   344668999999999988889999999999


Q ss_pred             HhhCCCcEEEEEEeec
Q 028673          169 ALSGPKTTILVMFSLS  184 (205)
Q Consensus       169 ~~l~~~g~~~i~~~~r  184 (205)
                      +.|+|||.+++..-.+
T Consensus        69 rvLkpGG~l~i~d~~~   84 (160)
T PLN02232         69 RVLKPGSRVSILDFNK   84 (160)
T ss_pred             HHcCcCeEEEEEECCC
Confidence            9999999998886543

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.43  E-value=2.1e-06  Score=70.01  Aligned_cols=118  Identities=16%  Similarity=0.126  Sum_probs=77.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC---Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~---~~  138 (205)
                      ++..+++||||-|--.+-.-+.|.. ++++|+ +-.++.|++..+........      ..-.+.+...|.....   ..
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~------~~f~a~f~~~Dc~~~~l~d~~  190 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKK------FIFTAVFIAADCFKERLMDLL  190 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhc------ccceeEEEEeccchhHHHHhc
Confidence            4678999999998655555566765 999999 55889888776643211000      0012345554433221   11


Q ss_pred             ccCCCCccEEEEcccccC----CcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          139 KAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      ...+++||+|-+--++|+    .+...-++..+.++|+|||.++-+.|.+..-
T Consensus       191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~I  243 (389)
T KOG1975|consen  191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVI  243 (389)
T ss_pred             cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHH
Confidence            222445999977766655    3456678999999999999999998866543

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.41  E-value=2.2e-06  Score=67.63  Aligned_cols=109  Identities=12%  Similarity=-0.008  Sum_probs=78.6

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCE--EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ..+||||||.|-.-+.+|+...+  ++|+|+ ...+..+.+.+...++            .|+.+...|.......-..+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------------~Nlri~~~DA~~~l~~~~~~  117 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------------KNLRLLCGDAVEVLDYLIPD  117 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------------CcEEEEcCCHHHHHHhcCCC
Confidence            57999999999999999999875  999999 7777666666665542            26788776655443333334


Q ss_pred             CCccEEEEc--ccccCCc------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          143 PPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       143 ~~fD~Ii~~--d~~y~~~------~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ++.|-|..+  |+-.-..      ..+.+++.+.+.|+|||.+.+..-....
T Consensus       118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y  169 (227)
T COG0220         118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY  169 (227)
T ss_pred             CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence            588888665  2222211      2458999999999999999998765553

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.37  E-value=6.1e-07  Score=67.76  Aligned_cols=97  Identities=21%  Similarity=0.222  Sum_probs=72.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      ...+.|||+|+|.+|..+|....+|++++. |...+.+++|+..++.            .++.+...|..+-+     -.
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~------------~n~evv~gDA~~y~-----fe   95 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD------------VNWEVVVGDARDYD-----FE   95 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC------------cceEEEeccccccc-----cc
Confidence            367999999999999999999778999999 8888999999877763            57888886554433     13


Q ss_pred             CccEEEEc--ccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673          144 PFDYIIGT--DVVYAEHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       144 ~fD~Ii~~--d~~y~~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                      .-|+|+|-  |...-.+..-++++.+.+.|+.+++++
T Consensus        96 ~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076          96 NADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             ccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence            56878764  222334445577777777888777765

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.35  E-value=1.4e-06  Score=67.31  Aligned_cols=119  Identities=15%  Similarity=0.142  Sum_probs=67.8

Q ss_pred             CCeEEEeCCCcc--HHHH--HHHHh-----C--CEEEEEcC-cchHHHHHHHHH-Hhhhh----------h-ccCCC---
Q 028673           65 GKRVIELGAGCG--VAGF--GMALL-----G--CNVITTDQ-IEVLPLLKRNVE-WNTSR----------I-SQMNP---  117 (205)
Q Consensus        65 ~~~VLdlGcGtG--l~sl--~~a~~-----g--~~v~~~D~-~~~l~~~~~n~~-~n~~~----------~-~~~~~---  117 (205)
                      .-+|+-.||+||  ..|+  .+...     +  .+|+|||+ +.+++.|++=+= .+...          . ...+.   
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            458999999999  3444  44441     2  26999999 778887764220 00000          0 00000   


Q ss_pred             -CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          118 -GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       118 -~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                       +......|.+...+..+.   .....+||+|+|-.++-+  .+....+++.+++.|+|||.+++...-.-.
T Consensus       112 v~~~lr~~V~F~~~NL~~~---~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l~  180 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLDP---DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESLP  180 (196)
T ss_dssp             E-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--ST
T ss_pred             EChHHcCceEEEecccCCC---CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccCC
Confidence             012345678888777661   223568999999998833  556679999999999999999998654444

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PLN02823 spermine synthase

Probab=98.34  E-value=3e-06  Score=70.67  Aligned_cols=106  Identities=18%  Similarity=0.200  Sum_probs=72.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++||.||+|.|..+..+.+..  .+|+++|+ +++++.+++++..+...        -..+++++...|-...  +..
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--------~~dprv~v~~~Da~~~--L~~  172 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--------FCDKRLELIINDARAE--LEK  172 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--------ccCCceEEEEChhHHH--Hhh
Confidence            35789999999999888777753  46999999 88999999987654211        0135677776443322  122


Q ss_pred             CCCCccEEEEcccccCCc--------ChHhHHH-HHHHhhCCCcEEEEEE
Q 028673          141 VAPPFDYIIGTDVVYAEH--------LLEPLLQ-TIFALSGPKTTILVMF  181 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~--------~~~~ll~-~~~~~l~~~g~~~i~~  181 (205)
                      ..++||+|+. |+. .+.        .-..+++ .+++.|+|||.+++-.
T Consensus       173 ~~~~yDvIi~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        173 RDEKFDVIIG-DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             CCCCccEEEe-cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            3468999997 432 210        1236777 8899999999876643

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.34  E-value=7.9e-07  Score=69.36  Aligned_cols=107  Identities=20%  Similarity=0.190  Sum_probs=75.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +|.+|||-+.|.|..++.+.++|| .|+.++. +.++++++.|==..+.          ....+.++..|..+.-. ...
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l----------~~~~i~iilGD~~e~V~-~~~  202 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL----------FEIAIKIILGDAYEVVK-DFD  202 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc----------cccccEEecccHHHHHh-cCC
Confidence            688999999999999999999999 6999999 8888888765211110          01235666644333211 123


Q ss_pred             CCCccEEEEcccccCCc---ChHhHHHHHHHhhCCCcEEEEEE
Q 028673          142 APPFDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~---~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      +.+||+||--++-+...   .-+.+.+.+.+.|+|||.++--.
T Consensus       203 D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv  245 (287)
T COG2521         203 DESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV  245 (287)
T ss_pred             ccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence            66899998866666532   24578999999999999976543

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.33  E-value=5.3e-07  Score=69.93  Aligned_cols=107  Identities=17%  Similarity=0.057  Sum_probs=70.6

Q ss_pred             CCCeEEEeCCCccHHHHHH-HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGM-ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~-a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ...+.||.|||.|.++-.+ .....+|-.+|. +..++.|++.+.....            ...++......+.   .+.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~------------~v~~~~~~gLQ~f---~P~  119 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP------------RVGEFYCVGLQDF---TPE  119 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC------------CEEEEEES-GGG-------
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC------------CcceEEecCHhhc---cCC
Confidence            4568999999999999755 455567999999 7788888876544211            1233444333322   233


Q ss_pred             CCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          142 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..+||+|++-.|+-|-  .++-.+++.++..|+|+|.+++-.+.-.
T Consensus       120 ~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~  165 (218)
T PF05891_consen  120 EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSS  165 (218)
T ss_dssp             TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence            5699999999999764  4566899999999999999988765433

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.33  E-value=2.4e-05  Score=61.65  Aligned_cols=133  Identities=19%  Similarity=0.191  Sum_probs=84.9

Q ss_pred             ccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHh
Q 028673           32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN  108 (205)
Q Consensus        32 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n  108 (205)
                      .+.+...++.++.=+.|+.++        .++.|++||=+|=+ =+.|+++|..  .++|+.+|+ +.+++.+++.++..
T Consensus        20 ~DQ~~~T~eT~~~Ra~~~~~~--------gdL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~   90 (243)
T PF01861_consen   20 LDQGYATPETTLRRAALMAER--------GDLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEE   90 (243)
T ss_dssp             GT---B-HHHHHHHHHHHHHT--------T-STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHhc--------CcccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc
Confidence            345667778888888899885        67899999999843 3667777765  457999999 66999999999988


Q ss_pred             hhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCC-CcEEEEEEeeccch
Q 028673          109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILVMFSLSMFS  187 (205)
Q Consensus       109 ~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~-~g~~~i~~~~r~~~  187 (205)
                      +.             .+++...|..+.-+. ...++||+++. |+.|-.+....++....+.|+. |+..|+++..+..+
T Consensus        91 gl-------------~i~~~~~DlR~~LP~-~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s  155 (243)
T PF01861_consen   91 GL-------------PIEAVHYDLRDPLPE-ELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS  155 (243)
T ss_dssp             T---------------EEEE---TTS---T-TTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--
T ss_pred             CC-------------ceEEEEecccccCCH-HHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc
Confidence            75             478888887766422 23579998887 8889888888899888888874 54889999888754


Q ss_pred             h
Q 028673          188 L  188 (205)
Q Consensus       188 ~  188 (205)
                      .
T Consensus       156 ~  156 (243)
T PF01861_consen  156 P  156 (243)
T ss_dssp             H
T ss_pred             H
Confidence            4

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.31  E-value=5.8e-06  Score=68.31  Aligned_cols=110  Identities=18%  Similarity=0.202  Sum_probs=70.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  133 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~  133 (205)
                      .+.+|+|-.||+|.+-+.+.+.         ..+++++|+ +.++..++.|+..++...          ....+...|.-
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~----------~~~~i~~~d~l  115 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN----------SNINIIQGDSL  115 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC----------BGCEEEES-TT
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc----------ccccccccccc
Confidence            5678999999999877777652         346999999 789999999987765421          12234443322


Q ss_pred             CCCCcccCCCCccEEEEcccccCC--c-------------------ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          134 NEDHIKAVAPPFDYIIGTDVVYAE--H-------------------LLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       134 ~~~~~~~~~~~fD~Ii~~d~~y~~--~-------------------~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..... ....+||+|++++++-..  .                   ..-.++..+.+.|+++|++.+..+..
T Consensus       116 ~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~  186 (311)
T PF02384_consen  116 ENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG  186 (311)
T ss_dssp             TSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred             ccccc-ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence            22111 124689999999887433  0                   01146777888899999988888754

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.29  E-value=6.7e-06  Score=66.35  Aligned_cols=119  Identities=14%  Similarity=0.118  Sum_probs=76.7

Q ss_pred             CCeEEEeCCCcc--HHHH--HHHHhC-------CEEEEEcC-cchHHHHHHHHHH--hh---hhh-------ccCC-C--
Q 028673           65 GKRVIELGAGCG--VAGF--GMALLG-------CNVITTDQ-IEVLPLLKRNVEW--NT---SRI-------SQMN-P--  117 (205)
Q Consensus        65 ~~~VLdlGcGtG--l~sl--~~a~~g-------~~v~~~D~-~~~l~~~~~n~~~--n~---~~~-------~~~~-~--  117 (205)
                      .-+|+-.||+||  -.|+  .+....       .+|+|||+ ..+++.|+.=+=.  +.   ...       .+.. +  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            458999999999  4444  444432       25999999 6688887642211  10   000       0000 0  


Q ss_pred             --CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccc-cC-CcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          118 --GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV-YA-EHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       118 --~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~-y~-~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                        +......|.+..++......   ..+.||+|+|-+|+ |. ...-..+++.++..|+|||.+++...-...
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~  246 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP  246 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence              11234456666655554432   45689999999887 33 556679999999999999999998765554

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.29  E-value=1.5e-05  Score=69.43  Aligned_cols=105  Identities=17%  Similarity=0.218  Sum_probs=72.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      +|.+|||++||.|-=+..+|.. +  ..|++.|+ +.-++.+++|+++.++            .++.+...|-.....  
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------------~nv~v~~~D~~~~~~--  178 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------------SNVALTHFDGRVFGA--  178 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCchhhhhh--
Confidence            6789999999999888888865 2  36999999 7788999999998764            345665544332211  


Q ss_pred             cCCCCccEEEEccc------ccCCc----------------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDV------VYAEH----------------LLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~------~y~~~----------------~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .....||.|+.--+      +....                .-..++....++|+|||+++.+..
T Consensus       179 ~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC  243 (470)
T PRK11933        179 ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC  243 (470)
T ss_pred             hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence            12357999984211      11110                124678888889999999876654

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.27  E-value=7.9e-06  Score=72.36  Aligned_cols=81  Identities=15%  Similarity=0.049  Sum_probs=52.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC----------CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeec
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG----------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW  132 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g----------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw  132 (205)
                      .+.+|||.|||+|.+.+.++...          ..++++|+ +.+++.++.|+...+.            ..+.+...+.
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------------~~~~i~~~d~   98 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------------LEINVINFNS   98 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------------CCceeeeccc
Confidence            45689999999998888777532          24899999 7899999998876531            0122222221


Q ss_pred             CCCCC--cccCCCCccEEEEcccccC
Q 028673          133 GNEDH--IKAVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       133 ~~~~~--~~~~~~~fD~Ii~~d~~y~  156 (205)
                      -....  .....++||+||+|+++-.
T Consensus        99 l~~~~~~~~~~~~~fD~IIgNPPy~~  124 (524)
T TIGR02987        99 LSYVLLNIESYLDLFDIVITNPPYGR  124 (524)
T ss_pred             ccccccccccccCcccEEEeCCCccc
Confidence            11100  0111358999999998854

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.25  E-value=7.1e-06  Score=64.02  Aligned_cols=95  Identities=20%  Similarity=0.244  Sum_probs=66.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +++++|+|+|.|++|+.+|-..  .+|+.+|- ..=+..++.-...-+            .+++++......+..   . 
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~------------L~nv~i~~~RaE~~~---~-  131 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG------------LENVEIVHGRAEEFG---Q-  131 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC------------CCCeEEehhhHhhcc---c-
Confidence            6899999999999999998654  35999997 443334443333322            235777775444443   1 


Q ss_pred             CCC-ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          142 APP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       142 ~~~-fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      ..+ ||+|.+-    ....+..+.+.+..++++||.++.
T Consensus       132 ~~~~~D~vtsR----Ava~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         132 EKKQYDVVTSR----AVASLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             ccccCcEEEee----hccchHHHHHHHHHhcccCCcchh
Confidence            123 9999884    446788999999999999888653

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=2.1e-05  Score=62.99  Aligned_cols=79  Identities=15%  Similarity=0.087  Sum_probs=59.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|+|.|.++..+++++++|+++++ +.+++.+++....              .++++++..|.-..+-...
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--------------~~n~~vi~~DaLk~d~~~l   93 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP--------------YDNLTVINGDALKFDFPSL   93 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc--------------ccceEEEeCchhcCcchhh
Confidence            345789999999999999999999999999999 6788888876541              2467888866665541111


Q ss_pred             CCCCccEEEEcccccC
Q 028673          141 VAPPFDYIIGTDVVYA  156 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~  156 (205)
                       . .++.|++|=+++-
T Consensus        94 -~-~~~~vVaNlPY~I  107 (259)
T COG0030          94 -A-QPYKVVANLPYNI  107 (259)
T ss_pred             -c-CCCEEEEcCCCcc
Confidence             1 6888999865553

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.25  E-value=6.2e-06  Score=67.32  Aligned_cols=117  Identities=23%  Similarity=0.250  Sum_probs=74.7

Q ss_pred             CeEEEeCCCcc--HHHHHH--HHh------CCEEEEEcC-cchHHHHHHHHHHh----hhhh-------cc-CCC-----
Q 028673           66 KRVIELGAGCG--VAGFGM--ALL------GCNVITTDQ-IEVLPLLKRNVEWN----TSRI-------SQ-MNP-----  117 (205)
Q Consensus        66 ~~VLdlGcGtG--l~sl~~--a~~------g~~v~~~D~-~~~l~~~~~n~~~n----~~~~-------~~-~~~-----  117 (205)
                      -+|+-.||.||  ..|+++  ...      ..+|+|||+ +.+++.|+.-+=..    +...       .. .++     
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~  196 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV  196 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence            58999999999  444444  332      136999999 77998887653110    0000       00 000     


Q ss_pred             --CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          118 --GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       118 --~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                        +......|.+...+..+.. . ...++||+|+|-.++.+  .+....+++.+.+.|+|||.+++...-.
T Consensus       197 ~v~~~lr~~V~F~~~NL~~~~-~-~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEs  265 (287)
T PRK10611        197 RVRQELANYVDFQQLNLLAKQ-W-AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSEN  265 (287)
T ss_pred             EEChHHHccCEEEcccCCCCC-C-ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence              0123345667766655422 1 12468999999887744  4567899999999999999988876533

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.23  E-value=5e-06  Score=64.68  Aligned_cols=114  Identities=18%  Similarity=0.272  Sum_probs=57.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHH-HhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMA-LLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a-~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..++..++|||||.|-+-+.+| ..+++ ++++++ +...+.++...+..........   ....++.+...|..+.+..
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g---~~~~~v~l~~gdfl~~~~~  116 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG---KRPGKVELIHGDFLDPDFV  116 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT---B---EEEEECS-TTTHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh---cccccceeeccCccccHhH
Confidence            3357799999999998877666 44665 999999 7666666554433211000000   0123455555444432211


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      ...-..-|+|+++...|.++....+ ......+++|.+++-
T Consensus       117 ~~~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  117 KDIWSDADVVFVNNTCFDPDLNLAL-AELLLELKPGARIIS  156 (205)
T ss_dssp             HHHGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT-EEEE
T ss_pred             hhhhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCCCEEEE
Confidence            1111357999999999977766666 444455777777653

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.21  E-value=1.4e-05  Score=63.77  Aligned_cols=96  Identities=21%  Similarity=0.307  Sum_probs=69.9

Q ss_pred             cccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhh
Q 028673           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSR  111 (205)
Q Consensus        33 ~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~  111 (205)
                      +.|.++-.-+.++...+...        ..-++..|||+|-|||.++..+...|++|+++++ +.|+..+++.+..-   
T Consensus        35 d~GQHilkNp~v~~~I~~ka--------~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gt---  103 (315)
T KOG0820|consen   35 DFGQHILKNPLVIDQIVEKA--------DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGT---  103 (315)
T ss_pred             ccchhhhcCHHHHHHHHhcc--------CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCC---
Confidence            45666555566655555442        3446678999999999999999999999999999 88888887765432   


Q ss_pred             hccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcc
Q 028673          112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD  152 (205)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d  152 (205)
                              +.....++...|.-..+     .+.||.+|++-
T Consensus       104 --------p~~~kLqV~~gD~lK~d-----~P~fd~cVsNl  131 (315)
T KOG0820|consen  104 --------PKSGKLQVLHGDFLKTD-----LPRFDGCVSNL  131 (315)
T ss_pred             --------CccceeeEEecccccCC-----CcccceeeccC
Confidence                    23457788886655443     45799888853

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=98.20  E-value=3.5e-06  Score=71.20  Aligned_cols=96  Identities=16%  Similarity=0.134  Sum_probs=64.0

Q ss_pred             eEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      .|||+|+|||++|+++++.|+. |++++. ..|.+.+++-...|+.           .++|.++.-.-.+.....  ..+
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----------SdkI~vInkrStev~vg~--~~R  135 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----------SDKINVINKRSTEVKVGG--SSR  135 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----------ccceeeeccccceeeecC--cch
Confidence            5899999999999999999986 999999 8899999999999965           567777763222221111  234


Q ss_pred             ccEEEEccccc---CCcChHhHHHHHHHhhCCCc
Q 028673          145 FDYIIGTDVVY---AEHLLEPLLQTIFALSGPKT  175 (205)
Q Consensus       145 fD~Ii~~d~~y---~~~~~~~ll~~~~~~l~~~g  175 (205)
                      -|+++..+..-   -+..++.+-.....++++|.
T Consensus       136 adI~v~e~fdtEligeGalps~qhAh~~L~~~nc  169 (636)
T KOG1501|consen  136 ADIAVREDFDTELIGEGALPSLQHAHDMLLVDNC  169 (636)
T ss_pred             hhhhhHhhhhhhhhccccchhHHHHHHHhcccCC
Confidence            56555542211   12344444445555566653

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.19  E-value=5e-06  Score=64.85  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=76.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+.++|||||.|.++-.+...+-. ++.+|. -.|++.++.. +.+               .+... .-.++.+.++...
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp---------------~i~~~-~~v~DEE~Ldf~e  135 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDP---------------SIETS-YFVGDEEFLDFKE  135 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCC---------------ceEEE-EEecchhcccccc
Confidence            467999999999999988888764 999999 5687776642 112               22222 2224455555567


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      +++|+||++--+++..+++.-...++..+||+|.++-+.
T Consensus       136 ns~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasm  174 (325)
T KOG2940|consen  136 NSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASM  174 (325)
T ss_pred             cchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHH
Confidence            899999999999999999999999999999999887653

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.17  E-value=0.00012  Score=61.53  Aligned_cols=148  Identities=13%  Similarity=0.048  Sum_probs=97.2

Q ss_pred             EEEEEEcCeEEEEEeCCCCcccccccccc-------HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 028673           13 VINLEVLGHQLQFSQDPNSKHLGTTVWDA-------SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (205)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~~W~~-------~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~   85 (205)
                      .+...+.+..+++.-+.++...-.+-|+-       -..||.-|..-       ..-..+..++|-=||+|.+.|.+|..
T Consensus       140 ~i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~l-------agw~~~~pl~DPmCGSGTi~IEAAl~  212 (381)
T COG0116         140 RINVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLL-------AGWKPDEPLLDPMCGSGTILIEAALI  212 (381)
T ss_pred             EEEEEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHH-------cCCCCCCccccCCCCccHHHHHHHHh
Confidence            34455666777777666544322223311       12344444332       12224468999999999999999988


Q ss_pred             CC-----------------------------------------EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCC
Q 028673           86 GC-----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG  123 (205)
Q Consensus        86 g~-----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  123 (205)
                      +.                                         .++++|+ +.+++.|+.|+...++           .+
T Consensus       213 ~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv-----------~d  281 (381)
T COG0116         213 AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGV-----------GD  281 (381)
T ss_pred             ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC-----------Cc
Confidence            74                                         2779999 8899999999999876           56


Q ss_pred             ceEEEEeecCCCCCcccCCCCccEEEEcccccC----Cc----ChHhHHHHHHHhhCCCcEEEEEE
Q 028673          124 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EH----LLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       124 ~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~----~~----~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .|.+...|..+....   ...+|+||+|+++-.    ..    .+..+.+.+++.++.-+..+++.
T Consensus       282 ~I~f~~~d~~~l~~~---~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         282 LIEFKQADATDLKEP---LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             eEEEEEcchhhCCCC---CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            788888777665421   168999999987633    11    34455566667776666655553

>PRK00536 speE spermidine synthase; Provisional

Probab=98.17  E-value=2.8e-05  Score=62.64  Aligned_cols=104  Identities=7%  Similarity=-0.107  Sum_probs=75.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .-++||=+|.|-|...-.+.+...+|+.+|+ +++++.+++-+......  .      ..+++++..  |-.    ....
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~--~------~DpRv~l~~--~~~----~~~~  137 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEV--K------NNKNFTHAK--QLL----DLDI  137 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHh--h------cCCCEEEee--hhh----hccC
Confidence            3479999999999999999998778999999 77999999866543221  1      234666654  211    1123


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ++||+||. |..+.    +.+.+.+++.|+|||.++.-......
T Consensus       138 ~~fDVIIv-Ds~~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~  176 (262)
T PRK00536        138 KKYDLIIC-LQEPD----IHKIDGLKRMLKEDGVFISVAKHPLL  176 (262)
T ss_pred             CcCCEEEE-cCCCC----hHHHHHHHHhcCCCcEEEECCCCccc
Confidence            68999996 65543    57778999999999998876554443

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.16  E-value=3.8e-05  Score=62.11  Aligned_cols=115  Identities=11%  Similarity=-0.028  Sum_probs=88.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      +..+|||+.||.|..=+-+... .   .+|...|+ +..++..++-++.++.           .+.+++...|..+.+.+
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----------~~i~~f~~~dAfd~~~l  203 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----------EDIARFEQGDAFDRDSL  203 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----------ccceEEEecCCCCHhHh
Confidence            3458999999999776655443 2   35999999 7789999999988865           34558888887777666


Q ss_pred             ccCCCCccEEEEcccccCCcC---hHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          139 KAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      ....+++++++.|.++-...+   ....++.+..++.|||.++.+-+...+.++
T Consensus       204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle  257 (311)
T PF12147_consen  204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLE  257 (311)
T ss_pred             hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchH
Confidence            666788999999988755444   445677888889999999988776666655

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=4.2e-05  Score=60.08  Aligned_cols=116  Identities=18%  Similarity=0.194  Sum_probs=79.1

Q ss_pred             cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cc-hHHHHHHHHHHhhhhhc
Q 028673           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IE-VLPLLKRNVEWNTSRIS  113 (205)
Q Consensus        37 ~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~-~l~~~~~n~~~n~~~~~  113 (205)
                      .+-+++.-|...+...       .-+++|++|||+|+-||-.+..+.+.||+ |+++|. -. .-..++.    +     
T Consensus        59 yVSRG~~KL~~ale~F-------~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d-----  122 (245)
T COG1189          59 YVSRGGLKLEKALEEF-------ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----D-----  122 (245)
T ss_pred             ccccHHHHHHHHHHhc-------CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----C-----
Confidence            3445688899999886       56789999999999999999999999986 999998 43 3233332    1     


Q ss_pred             cCCCCCCCCCceEEE-EeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          114 QMNPGSDLLGSIQAV-ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       114 ~~~~~~~~~~~i~~~-~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                               +++.+. ..+...... ....+..|+|++ |+-|  -....++..+..++++++.++.-.
T Consensus       123 ---------~rV~~~E~tN~r~l~~-~~~~~~~d~~v~-DvSF--ISL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         123 ---------PRVIVLERTNVRYLTP-EDFTEKPDLIVI-DVSF--ISLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             ---------CcEEEEecCChhhCCH-HHcccCCCeEEE-Eeeh--hhHHHHHHHHHHhcCCCceEEEEe
Confidence                     233332 222222221 112347888887 4444  466788889999999988766554

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.12  E-value=8.1e-05  Score=61.75  Aligned_cols=119  Identities=13%  Similarity=0.102  Sum_probs=71.8

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS  119 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~  119 (205)
                      +++.-|.+.+..............+|+++|||||++|-.+..+.++|++|+++|...+-+.    +..+           
T Consensus       187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~----L~~~-----------  251 (357)
T PRK11760        187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQS----LMDT-----------  251 (357)
T ss_pred             hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHh----hhCC-----------
Confidence            4455666665443111000012457899999999999999999999999999997433222    2222           


Q ss_pred             CCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCC--cEEEEEEee
Q 028673          120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK--TTILVMFSL  183 (205)
Q Consensus       120 ~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~--g~~~i~~~~  183 (205)
                         +++.....+--...  + ...++|.+++ |++-   .+..+.+.+.+.+..|  ..+++..+.
T Consensus       252 ---~~V~h~~~d~fr~~--p-~~~~vDwvVc-Dmve---~P~rva~lm~~Wl~~g~cr~aIfnLKl  307 (357)
T PRK11760        252 ---GQVEHLRADGFKFR--P-PRKNVDWLVC-DMVE---KPARVAELMAQWLVNGWCREAIFNLKL  307 (357)
T ss_pred             ---CCEEEEeccCcccC--C-CCCCCCEEEE-eccc---CHHHHHHHHHHHHhcCcccEEEEEEEc
Confidence               34555553322221  1 1568999888 6664   3446666666666544  356666554

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.11  E-value=4e-05  Score=59.85  Aligned_cols=105  Identities=18%  Similarity=0.179  Sum_probs=77.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-CC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~~  137 (205)
                      ...+++||||.=||+-++..|..   +.+|+++|+ ++..+...+-.+..+.           ..+|++....-.+. ++
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----------~~KI~~i~g~a~esLd~  140 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----------DHKITFIEGPALESLDE  140 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----------cceeeeeecchhhhHHH
Confidence            36789999999999888888865   778999999 6788888777776654           35677766443322 11


Q ss_pred             c--ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 I--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ~--~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      +  ....+.||+++.-   .+..+.....+.+.+++++||.+++-.
T Consensus       141 l~~~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  141 LLADGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             HHhcCCCCceeEEEEc---cchHHHHHHHHHHHhhcccccEEEEec
Confidence            1  1135689999885   556666788889999999999877653

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.09  E-value=1.2e-05  Score=58.50  Aligned_cols=44  Identities=30%  Similarity=0.413  Sum_probs=39.6

Q ss_pred             eEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhh
Q 028673           67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTS  110 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~  110 (205)
                      +|||+|||+|..++.+++.+.  +|+++|. +++.+.+++|++.|+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~   47 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL   47 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC
Confidence            489999999999999998876  5999999 8899999999998854

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.06  E-value=1.5e-05  Score=64.47  Aligned_cols=92  Identities=20%  Similarity=0.288  Sum_probs=65.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++..|||+|+|+|.++..+++.+.+|+++|. +..++.+++.+..              .+++++...|..+.+......
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~--------------~~~~~vi~~D~l~~~~~~~~~   95 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS--------------NPNVEVINGDFLKWDLYDLLK   95 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT--------------CSSEEEEES-TTTSCGGGHCS
T ss_pred             CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh--------------cccceeeecchhccccHHhhc
Confidence            7889999999999999999999989999999 7788888876552              257899887777655333223


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhC
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSG  172 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~  172 (205)
                      .....|++|-+ |  ..-..++..+...-+
T Consensus        96 ~~~~~vv~NlP-y--~is~~il~~ll~~~~  122 (262)
T PF00398_consen   96 NQPLLVVGNLP-Y--NISSPILRKLLELYR  122 (262)
T ss_dssp             SSEEEEEEEET-G--TGHHHHHHHHHHHGG
T ss_pred             CCceEEEEEec-c--cchHHHHHHHhhccc
Confidence            45667888754 4  233455555555333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.00  E-value=6.2e-06  Score=66.07  Aligned_cols=123  Identities=15%  Similarity=0.215  Sum_probs=71.4

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhh-hh-------ccCCCCCC--------C
Q 028673           60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTS-RI-------SQMNPGSD--------L  121 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~-~~-------~~~~~~~~--------~  121 (205)
                      +...+|.++||+|||.-+..+..|..-+ +|+++|+ +...+.+++=++.-+. .+       ....+...        .
T Consensus        52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l  131 (256)
T PF01234_consen   52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL  131 (256)
T ss_dssp             TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred             ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence            4566788999999999877666665555 5999999 6666655554432211 00       00000000        0


Q ss_pred             CCce-EEEEeecCCCCCccc---CCCCccEEEEcccccC----CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          122 LGSI-QAVELDWGNEDHIKA---VAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       122 ~~~i-~~~~~dw~~~~~~~~---~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ...| ++...|..+...+..   .+++||+|+++-|+-.    .+.+...++.+.++|||||.++++.-
T Consensus       132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~  200 (256)
T PF01234_consen  132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV  200 (256)
T ss_dssp             HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            1112 355666666554433   2346999999877743    34566788888889999999999864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=0.00026  Score=59.71  Aligned_cols=114  Identities=19%  Similarity=0.157  Sum_probs=77.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC----CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+|.+|||+.++.|-=+..+|.+.    ..|++.|. +.=++.++.|+++-+.            .++.+...|-.....
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------------~nv~~~~~d~~~~~~  222 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------------RNVIVVNKDARRLAE  222 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CceEEEecccccccc
Confidence            368899999999997777777653    45799999 6688999999998875            244555544333322


Q ss_pred             cccCCCCccEEEEccc------ccCC----------------cChHhHHHHHHHhhCCCcEEEEEEeeccchh
Q 028673          138 IKAVAPPFDYIIGTDV------VYAE----------------HLLEPLLQTIFALSGPKTTILVMFSLSMFSL  188 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~------~y~~----------------~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~  188 (205)
                      ......+||.|+.-.+      +...                .....+++...++++|||.++.+...-.+..
T Consensus       223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eE  295 (355)
T COG0144         223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEE  295 (355)
T ss_pred             cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhc
Confidence            2222336999975222      2110                1133688888899999999998876555543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.93  E-value=6.6e-05  Score=66.18  Aligned_cols=110  Identities=11%  Similarity=0.008  Sum_probs=73.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+..+||||||.|-..+.+|+...  .++++|+ ...+..+.+.+...+.            .|+.+...+....... .
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------------~N~~~~~~~~~~~~~~-~  413 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------------TNFLLFPNNLDLILND-L  413 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------------CeEEEEcCCHHHHHHh-c
Confidence            456899999999999999998866  4999999 6655555555544432            4566655443222111 2


Q ss_pred             CCCCccEEEEc--ccccCCc------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          141 VAPPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       141 ~~~~fD~Ii~~--d~~y~~~------~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      .+.++|-|..+  |+-....      ..+.+++.+++.|+|||.+.+..-....
T Consensus       414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y  467 (506)
T PRK01544        414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY  467 (506)
T ss_pred             CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence            34678888665  3332221      2458999999999999999988665443

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=97.92  E-value=8.9e-06  Score=65.29  Aligned_cols=124  Identities=23%  Similarity=0.213  Sum_probs=77.5

Q ss_pred             ccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhh
Q 028673           32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS  110 (205)
Q Consensus        32 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~  110 (205)
                      ..+|..+|++++.|.+++.++       +....+++|.++|||.++..+.+++..--|...|- ..+.-+...+...+..
T Consensus        65 ~~tg~~~w~~al~L~~~l~~~-------~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~~~~~  137 (262)
T KOG2497|consen   65 ARTGLSVWESALSLEADLRDK-------PDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCAGLLLEEIILLSRD  137 (262)
T ss_pred             HHhccccchHHHHHHHHHhhC-------cccccccchHhhccCHHHHHHHHHhcccceecCCccCcHHHHHHHHHhcccc
Confidence            468999999999999999987       45577889999999999988666665444444444 4343344443333321


Q ss_pred             hhccCCCCCCCCCceEEEEeecCCCCCccc-CCCCccEEEEcccccCCcChHhHHHHHHHhh
Q 028673          111 RISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALS  171 (205)
Q Consensus       111 ~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l  171 (205)
                      ..        ....-.....+|......+. ....+|+|+++|++|. .....+++....+|
T Consensus       138 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL  190 (262)
T KOG2497|consen  138 LS--------LEVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL  190 (262)
T ss_pred             cc--------ccccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence            10        01112222333332221111 1234999999999999 77777777777754

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.92  E-value=3.1e-05  Score=66.76  Aligned_cols=99  Identities=12%  Similarity=0.077  Sum_probs=63.9

Q ss_pred             eEEEeCCCccHHHHHHHHhCCEEEEE---cC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           67 RVIELGAGCGVAGFGMALLGCNVITT---DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g~~v~~~---D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+||+|||+|..|..+..++-.+..+   |. +..++.|.+   + |+               -....-.+ ...++..+
T Consensus       120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale---R-Gv---------------pa~~~~~~-s~rLPfp~  179 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE---R-GV---------------PAMIGVLG-SQRLPFPS  179 (506)
T ss_pred             EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh---c-Cc---------------chhhhhhc-cccccCCc
Confidence            68999999999999999888753333   33 223333322   1 11               11000001 12234557


Q ss_pred             CCccEEEEcccccCCcCh-HhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          143 PPFDYIIGTDVVYAEHLL-EPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~-~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..||+|-++.|+-..... .-++-.+.++|+|||.++++.+.-+
T Consensus       180 ~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  180 NAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             cchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence            899999999988653332 4578889999999999999987544

; GO: 0008168 methyltransferase activity

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.90  E-value=0.00017  Score=55.75  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=64.5

Q ss_pred             cccccH--HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhc
Q 028673           37 TVWDAS--VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS  113 (205)
Q Consensus        37 ~~W~~~--~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~  113 (205)
                      .-||--  ..+.+||...          ..+..|-|+|||-+.++..+ ..+..|...|+ ..           |     
T Consensus        53 ~~WP~nPvd~iI~~l~~~----------~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n-----  105 (219)
T PF05148_consen   53 KKWPVNPVDVIIEWLKKR----------PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N-----  105 (219)
T ss_dssp             CTSSS-HHHHHHHHHCTS-----------TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S-----
T ss_pred             hcCCCCcHHHHHHHHHhc----------CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C-----
Confidence            456543  3456666532          24568999999999887443 23456999998 42           1     


Q ss_pred             cCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc-hhHHHH
Q 028673          114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF-SLTFFC  192 (205)
Q Consensus       114 ~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~-~~~~~~  192 (205)
                                 -.+...|...   .+..++..|++|.+=.+- -.++..+++...+.|++||.++|+.....+ ....|.
T Consensus       106 -----------~~Vtacdia~---vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~  170 (219)
T PF05148_consen  106 -----------PRVTACDIAN---VPLEDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFI  170 (219)
T ss_dssp             -----------TTEEES-TTS----S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHH
T ss_pred             -----------CCEEEecCcc---CcCCCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHH
Confidence                       1234444333   344567899998873332 457889999999999999999999765444 444444


Q ss_pred             H
Q 028673          193 W  193 (205)
Q Consensus       193 ~  193 (205)
                      .
T Consensus       171 ~  171 (219)
T PF05148_consen  171 K  171 (219)
T ss_dssp             H
T ss_pred             H
Confidence            3

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.88  E-value=9.5e-05  Score=60.23  Aligned_cols=105  Identities=14%  Similarity=0.029  Sum_probs=74.1

Q ss_pred             CeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++||-+|-|.|...-.+.+..  .+++++|+ +++++.+++-+..-....       + .+++.+...|-.+.-  ....
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~-------~-dpRv~i~i~Dg~~~v--~~~~  147 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGA-------D-DPRVEIIIDDGVEFL--RDCE  147 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccccc-------C-CCceEEEeccHHHHH--HhCC
Confidence            599999999999999999887  46999999 789999998765432110       1 356777664433221  1223


Q ss_pred             CCccEEEEcccccCCcC-----hHhHHHHHHHhhCCCcEEEEEE
Q 028673          143 PPFDYIIGTDVVYAEHL-----LEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~-----~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .+||+|+.- +.-....     -..+.+.+++.|+++|.++.-.
T Consensus       148 ~~fDvIi~D-~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         148 EKFDVIIVD-STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             CcCCEEEEc-CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            489999974 3222111     3689999999999999877763

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.85  E-value=0.00017  Score=56.09  Aligned_cols=106  Identities=16%  Similarity=0.078  Sum_probs=65.1

Q ss_pred             EEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           68 VIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        68 VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      |.|+||--|.+++.+.+.|.  +++++|+ +.-++.++.|++.++.           .+++++...|--+  .+. ..+.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----------~~~i~~rlgdGL~--~l~-~~e~   66 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----------EDRIEVRLGDGLE--VLK-PGED   66 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------------TTTEEEEE-SGGG--G---GGG-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------cccEEEEECCccc--ccC-CCCC
Confidence            68999999999999999987  5999999 7799999999998854           4678887743211  111 1223


Q ss_pred             ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      .|.|+.+.+--  ..+..+++.....++....+++.-......+.
T Consensus        67 ~d~ivIAGMGG--~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR  109 (205)
T PF04816_consen   67 VDTIVIAGMGG--ELIIEILEAGPEKLSSAKRLILQPNTHAYELR  109 (205)
T ss_dssp             --EEEEEEE-H--HHHHHHHHHTGGGGTT--EEEEEESS-HHHHH
T ss_pred             CCEEEEecCCH--HHHHHHHHhhHHHhccCCeEEEeCCCChHHHH
Confidence            78887774432  23445555544445555566665554444444

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PRK10742 putative methyltransferase; Provisional

Probab=97.84  E-value=8e-05  Score=59.21  Aligned_cols=85  Identities=19%  Similarity=0.287  Sum_probs=56.7

Q ss_pred             eEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCc
Q 028673           67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF  145 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~f  145 (205)
                      +|||+-+|+|..|+.++.+|++|+++|. +.+...++.|++.-... .+...  ....++++...+-.+.  +.....+|
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~-~~~~~--~~~~ri~l~~~da~~~--L~~~~~~f  165 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYAD-AEIGG--WLQERLQLIHASSLTA--LTDITPRP  165 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhc-cccch--hhhceEEEEeCcHHHH--HhhCCCCC
Confidence            8999999999999999999999999999 77888888888763210 00000  0013455555333222  11123479


Q ss_pred             cEEEEcccccCC
Q 028673          146 DYIIGTDVVYAE  157 (205)
Q Consensus       146 D~Ii~~d~~y~~  157 (205)
                      |+|+. |+.|..
T Consensus       166 DVVYl-DPMfp~  176 (250)
T PRK10742        166 QVVYL-DPMFPH  176 (250)
T ss_pred             cEEEE-CCCCCC
Confidence            99997 666664

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.83  E-value=7.7e-05  Score=59.73  Aligned_cols=113  Identities=15%  Similarity=0.107  Sum_probs=76.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      +.++||=||-|.|...-.+.+..  .+|+++|+ +.+++.+++-+......        ...+++++...|-...  +..
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--------~~d~r~~i~~~Dg~~~--l~~  145 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--------LDDPRVRIIIGDGRKF--LKE  145 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--------GGSTTEEEEESTHHHH--HHT
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--------cCCCceEEEEhhhHHH--HHh
Confidence            56899999999998888888775  47999999 78999999887664321        1135777776433221  112


Q ss_pred             CCC-CccEEEEcccccC---C--cChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          141 VAP-PFDYIIGTDVVYA---E--HLLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       141 ~~~-~fD~Ii~~d~~y~---~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      ... +||+|+. |+.-.   .  -.-.++++.+++.|+|+|.+++-.......
T Consensus       146 ~~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~  197 (246)
T PF01564_consen  146 TQEEKYDVIIV-DLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH  197 (246)
T ss_dssp             SSST-EEEEEE-ESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT
T ss_pred             ccCCcccEEEE-eCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc
Confidence            233 8999987 33221   1  123589999999999999988877554443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.82  E-value=0.00029  Score=51.55  Aligned_cols=47  Identities=17%  Similarity=0.186  Sum_probs=38.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHH------hCCEEEEEcC-cchHHHHHHHHHHhh
Q 028673           63 LKGKRVIELGAGCGVAGFGMAL------LGCNVITTDQ-IEVLPLLKRNVEWNT  109 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~------~g~~v~~~D~-~~~l~~~~~n~~~n~  109 (205)
                      .+..+|+|+|||.|.+|..++.      .+.+|+++|. +..++.+....+...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            3567899999999999999998      3567999999 777777777666543

>PHA01634 hypothetical protein

Probab=97.80  E-value=4.2e-05  Score=54.29  Aligned_cols=51  Identities=14%  Similarity=0.240  Sum_probs=45.7

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhh
Q 028673           60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS  110 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~  110 (205)
                      .-++++++|+|+|++.|-.++..+.+||+ |++.+. +...+..+.|++.|.+
T Consensus        24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         24 MLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             heeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence            45778999999999999999999999997 999999 7788999999998853

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.79  E-value=0.00071  Score=48.29  Aligned_cols=104  Identities=22%  Similarity=0.226  Sum_probs=65.6

Q ss_pred             EEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC-
Q 028673           68 VIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA-  142 (205)
Q Consensus        68 VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~-  142 (205)
                      ++|+|||+|... .++...   ..++++|. +.++...+..... ..           ...+.+...+.... ...... 
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~-~~~~~~~  117 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG-----------LGLVDFVVADALGG-VLPFEDS  117 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC-----------CCceEEEEeccccC-CCCCCCC
Confidence            999999999876 444443   37899999 6666663333221 10           00145555554431 112222 


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ..||++ ......+.......+..+.+.++|+|.+++....+..
T Consensus       118 ~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         118 ASFDLV-ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             CceeEE-eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            479999 5544443333788999999999999999998776554

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.78  E-value=0.00016  Score=56.23  Aligned_cols=113  Identities=17%  Similarity=0.152  Sum_probs=73.2

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCC
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (205)
                      +|.+|.+||.......   .......++||+||=+.-..+  +..+. +|+.+|+ +.                      
T Consensus        31 SSK~lv~wL~~~~~~~---~~~~~~lrlLEVGals~~N~~--s~~~~fdvt~IDLns~----------------------   83 (219)
T PF11968_consen   31 SSKWLVEWLKELGVRP---KNGRPKLRLLEVGALSTDNAC--STSGWFDVTRIDLNSQ----------------------   83 (219)
T ss_pred             hhHHHHHHhhhhcccc---ccccccceEEeecccCCCCcc--cccCceeeEEeecCCC----------------------
Confidence            6889999997753211   011122589999996432222  22232 5999998 42                      


Q ss_pred             CCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChH---hHHHHHHHhhCCCcE-----EEEEEeecc
Q 028673          119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE---PLLQTIFALSGPKTT-----ILVMFSLSM  185 (205)
Q Consensus       119 ~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~---~ll~~~~~~l~~~g~-----~~i~~~~r~  185 (205)
                           ...+.+.|+-+..-.....++||+|.+|-++-+.....   .+++.+.++|+|+|.     ++++.|..-
T Consensus        84 -----~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C  153 (219)
T PF11968_consen   84 -----HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC  153 (219)
T ss_pred             -----CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence                 12344555554432223467899999999997655433   799999999999999     999987443

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.76  E-value=9.4e-06  Score=62.37  Aligned_cols=94  Identities=22%  Similarity=0.261  Sum_probs=72.6

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      ..++||||+|-|-++..++..-.+|++|+. ..|...+++.   |-               -.....+|.+.      +-
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk---~y---------------nVl~~~ew~~t------~~  168 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK---NY---------------NVLTEIEWLQT------DV  168 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc---CC---------------ceeeehhhhhc------Cc
Confidence            478999999999999999887777999999 5576655541   10               12345566654      34


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCC-CcEEEEEEe
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILVMFS  182 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~-~g~~~i~~~  182 (205)
                      +||+|.|-.++-.....-.|++.++..+.| +|+++++..
T Consensus       169 k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV  208 (288)
T KOG3987|consen  169 KLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV  208 (288)
T ss_pred             eeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence            899999988887777888999999999988 899888753

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.72  E-value=0.00024  Score=55.07  Aligned_cols=105  Identities=18%  Similarity=0.129  Sum_probs=76.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+|.+||++|=|.|++.-.+-.+.. +=+.++. |++++.++.+.-..             ..++.+....|.+..... 
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------------k~nViil~g~WeDvl~~L-  165 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------------KENVIILEGRWEDVLNTL-  165 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------------ccceEEEecchHhhhccc-
Confidence            3688999999999998887776655 3567777 88988888764322             357888999999875332 


Q ss_pred             CCCCccEEEEcccc-cCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVV-YAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~-y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .++.||-|+- |.+ -+-++...+.+.+.++|||+|.+-....
T Consensus       166 ~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg  207 (271)
T KOG1709|consen  166 PDKHFDGIYY-DTYSELYEDLRHFHQHVVRLLKPEGVFSYFNG  207 (271)
T ss_pred             cccCcceeEe-echhhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence            3567998875 333 2234556777888899999998766543

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.72  E-value=2.9e-05  Score=59.11  Aligned_cols=50  Identities=28%  Similarity=0.159  Sum_probs=35.8

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCC-CCCeEEEeCCCccHHHHHHHHhC---CEEEEEcCc
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKL-KGKRVIELGAGCGVAGFGMALLG---CNVITTDQI   95 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~-~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~~   95 (205)
                      +++.-|.+.+....      .... ++.+||||||++|-.+..+.+++   .+|+++|+.
T Consensus         4 Ra~~KL~ei~~~~~------~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~   57 (181)
T PF01728_consen    4 RAAFKLYEIDEKFK------IFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLG   57 (181)
T ss_dssp             THHHHHHHHHHTTS------SS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESS
T ss_pred             HHHHHHHHHHHHCC------CCCcccccEEEEcCCcccceeeeeeecccccceEEEEecc
Confidence            35566666666541      0112 45799999999999999999988   569999993

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.70  E-value=0.00058  Score=55.22  Aligned_cols=114  Identities=21%  Similarity=0.193  Sum_probs=71.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcc-hHHHHHHHHHHhhhh------h-----ccCC-------------
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSR------I-----SQMN-------------  116 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~-~l~~~~~n~~~n~~~------~-----~~~~-------------  116 (205)
                      ...+.+||-=|||.|.++..+|++|..+.+.|.+- |  ++..|.-.|...      +     ..++             
T Consensus        54 ~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~M--ll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i  131 (270)
T PF07942_consen   54 DRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFM--LLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI  131 (270)
T ss_pred             CCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHH--HHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence            33457899999999999999999999999999954 5  333444444311      0     0000             


Q ss_pred             C----C--CCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC---cChHhHHHHHHHhhCCCcEEEEE
Q 028673          117 P----G--SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       117 ~----~--~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      |    .  .....++.....|+.+........++||.|+.+   |..   +++-.-+++|.++|||||..+=.
T Consensus       132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~  201 (270)
T PF07942_consen  132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWINF  201 (270)
T ss_pred             CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEEec
Confidence            0    0  012334555554444333222224799999988   443   44557788999999999954433

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.66  E-value=0.0012  Score=51.68  Aligned_cols=134  Identities=13%  Similarity=0.111  Sum_probs=83.5

Q ss_pred             cccccccc-HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEEcC-cchHHHHHHHHHHh
Q 028673           34 LGTTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWN  108 (205)
Q Consensus        34 ~g~~~W~~-~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~--~v~~~D~-~~~l~~~~~n~~~n  108 (205)
                      ...++|+- ---||..+......    ....+|.+||-||+.+|..--.++.- |.  .|++++. +...+.+-.-++. 
T Consensus        46 ~eYR~W~P~RSKLaAai~~Gl~~----~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-  120 (229)
T PF01269_consen   46 VEYRVWNPFRSKLAAAILKGLEN----IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-  120 (229)
T ss_dssp             EEEEEE-TTT-HHHHHHHTT-S------S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-
T ss_pred             cceeecCchhhHHHHHHHcCccc----cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-
Confidence            35667843 23455555443111    23446889999999999776666654 43  5999999 6544433322221 


Q ss_pred             hhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       109 ~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                                   ..|+..+-.|-..+......-+..|+|++- + -.++..+-+.......||+||.++++...|...
T Consensus       121 -------------R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D-V-aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD  184 (229)
T PF01269_consen  121 -------------RPNIIPILEDARHPEKYRMLVEMVDVIFQD-V-AQPDQARIAALNARHFLKPGGHLIISIKARSID  184 (229)
T ss_dssp             -------------STTEEEEES-TTSGGGGTTTS--EEEEEEE---SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-
T ss_pred             -------------CCceeeeeccCCChHHhhcccccccEEEec-C-CChHHHHHHHHHHHhhccCCcEEEEEEecCccc
Confidence                         135676776767666665556789988884 3 356677788888899999999999999876653

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.65  E-value=0.00058  Score=54.43  Aligned_cols=96  Identities=15%  Similarity=0.094  Sum_probs=65.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      ....|-|+|||-+-++.   ..-.+|+..|+-.          .|                -++...|..+.   +..++
T Consensus       180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------~~----------------~~V~~cDm~~v---Pl~d~  227 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------VN----------------ERVIACDMRNV---PLEDE  227 (325)
T ss_pred             CceEEEecccchhhhhh---ccccceeeeeeec----------CC----------------CceeeccccCC---cCccC
Confidence            45689999999886554   3344588888722          11                24455454543   34577


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc-hhHHHH
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF-SLTFFC  192 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~-~~~~~~  192 (205)
                      +.|+++.+-.+ .-.++..+++.+.+.|++||.+||+.-...+ ....|+
T Consensus       228 svDvaV~CLSL-Mgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~  276 (325)
T KOG3045|consen  228 SVDVAVFCLSL-MGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFV  276 (325)
T ss_pred             cccEEEeeHhh-hcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHH
Confidence            89999876333 2457789999999999999999999764444 444443

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.60  E-value=0.00017  Score=59.15  Aligned_cols=44  Identities=11%  Similarity=0.018  Sum_probs=38.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHH
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEW  107 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~  107 (205)
                      ++..+||.+||.|--+..+++..   .+|+++|. +++++.+++++..
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~   66 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP   66 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence            56799999999999999999874   57999999 8899999887643

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.59  E-value=0.0011  Score=53.78  Aligned_cols=103  Identities=18%  Similarity=0.135  Sum_probs=62.9

Q ss_pred             CeEEEeCCCc-cHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHH-HhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           66 KRVIELGAGC-GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        66 ~~VLdlGcGt-Gl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++|+=||||. -+.++.+++.   ++.|+.+|+ +++++.+++-++ ..+.           ..++.+...|-.+..   
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----------~~~m~f~~~d~~~~~---  187 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----------SKRMSFITADVLDVT---  187 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------------SSEEEEES-GGGG----
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----------cCCeEEEecchhccc---
Confidence            5999999996 7888888864   456999999 889999988776 3333           357888875544332   


Q ss_pred             cCCCCccEEEEccccc-CCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVY-AEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y-~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..-..||+|+.+-.+. ..+.-..+++.+.+.++||+.+++=+.
T Consensus       188 ~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa  231 (276)
T PF03059_consen  188 YDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA  231 (276)
T ss_dssp             GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred             cccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence            2235899998887776 356778999999999999998877644

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.57  E-value=0.00055  Score=55.70  Aligned_cols=103  Identities=18%  Similarity=0.288  Sum_probs=58.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ++..++|||+|||+|....++... +  .+++++|. +.|++.++.-++.. .             ...  ...|.....
T Consensus        31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~-~-------------~~~--~~~~~~~~~   94 (274)
T PF09243_consen   31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG-P-------------NNR--NAEWRRVLY   94 (274)
T ss_pred             CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc-c-------------ccc--cchhhhhhh
Confidence            566789999999999766555432 2  25999999 67888777644332 1             000  111111100


Q ss_pred             c-ccCCCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          138 I-KAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       138 ~-~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      . .....+.|+|+++-++-....  ...+++.+...+++  .++++.+
T Consensus        95 ~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp  140 (274)
T PF09243_consen   95 RDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP  140 (274)
T ss_pred             cccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence            0 011223499999988866444  33555555555554  5544443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.47  E-value=0.00074  Score=56.03  Aligned_cols=109  Identities=12%  Similarity=0.070  Sum_probs=66.5

Q ss_pred             CCCeEEEeCCCccHHHH-HHH---Hh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEE--EEeecCC
Q 028673           64 KGKRVIELGAGCGVAGF-GMA---LL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA--VELDWGN  134 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl-~~a---~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~--~~~dw~~  134 (205)
                      .+..++|||||.|.=.- .+.   +.  ...++++|+ .++++.+..++....            .+.+.+  ...+..+
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~------------~p~l~v~~l~gdy~~  143 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN------------FSHVRCAGLLGTYDD  143 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc------------CCCeEEEEEEecHHH
Confidence            45689999999985322 222   22  346999999 678888888877221            233444  4444433


Q ss_pred             CCC-ccc--CCCCccEEEEc-ccccC--CcChHhHHHHHHH-hhCCCcEEEEEEeec
Q 028673          135 EDH-IKA--VAPPFDYIIGT-DVVYA--EHLLEPLLQTIFA-LSGPKTTILVMFSLS  184 (205)
Q Consensus       135 ~~~-~~~--~~~~fD~Ii~~-d~~y~--~~~~~~ll~~~~~-~l~~~g~~~i~~~~r  184 (205)
                      ... ++.  ......+++.- ..+-+  +.....+++.+++ .++|++.+++..-..
T Consensus       144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~  200 (319)
T TIGR03439       144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC  200 (319)
T ss_pred             HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence            211 111  12234555433 35544  4455589999999 999999999986533

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.40  E-value=0.0013  Score=50.89  Aligned_cols=99  Identities=18%  Similarity=0.199  Sum_probs=64.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-C--EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc-
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG-C--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g-~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~-  139 (205)
                      ++.+|+||||-.|-.+..+++.. .  +|+++|+.++-                      .-..+.+.+.|..+.+... 
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------------------~~~~V~~iq~d~~~~~~~~~  102 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------------------PIPGVIFLQGDITDEDTLEK  102 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------------------cCCCceEEeeeccCccHHHH
Confidence            56899999999999999999873 3  39999994421                      1234778888877765322 


Q ss_pred             ----cCCCCccEEEEcccccCC------------cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          140 ----AVAPPFDYIIGTDVVYAE------------HLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       140 ----~~~~~fD~Ii~~d~~y~~------------~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                          ....++|+|++ |.--..            ......++.....|+|+|.+++-.-.-.
T Consensus       103 l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~  163 (205)
T COG0293         103 LLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE  163 (205)
T ss_pred             HHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence                12334698885 332221            1122445555667899999887654333

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.35  E-value=8.9e-05  Score=57.57  Aligned_cols=81  Identities=19%  Similarity=0.107  Sum_probs=64.2

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-ccCC
Q 028673           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVA  142 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-~~~~  142 (205)
                      -..|+|--||.|--.+..|..|+.|+++|+ |.=+..++.|++.-|+           .++|++++.||-+.... ....
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI-----------~~rItFI~GD~ld~~~~lq~~K  163 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV-----------PDRITFICGDFLDLASKLKADK  163 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC-----------CceeEEEechHHHHHHHHhhhh
Confidence            357999999999999999999999999999 7789999999998876           35899999998776422 2223


Q ss_pred             CCccEEEEcccccC
Q 028673          143 PPFDYIIGTDVVYA  156 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~  156 (205)
                      ..+|+|..+++--.
T Consensus       164 ~~~~~vf~sppwgg  177 (263)
T KOG2730|consen  164 IKYDCVFLSPPWGG  177 (263)
T ss_pred             heeeeeecCCCCCC
Confidence            35778877765533

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.26  E-value=0.0089  Score=46.65  Aligned_cols=109  Identities=14%  Similarity=0.088  Sum_probs=72.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           65 GKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +.++.|+||-.|++++++.+.+.  .+++.|+ +..++.+.+|+..++.           .+++++...|-   ...-..
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----------~~~i~vr~~dg---l~~l~~   82 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----------SERIDVRLGDG---LAVLEL   82 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----------cceEEEeccCC---ccccCc
Confidence            45699999999999999998864  4999999 8899999999999853           56777777443   222223


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      +..+|+|+.+.+--  ..+..+++.-...++.--.+++.-..+...++
T Consensus        83 ~d~~d~ivIAGMGG--~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR  128 (226)
T COG2384          83 EDEIDVIVIAGMGG--TLIREILEEGKEKLKGVERLILQPNIHTYELR  128 (226)
T ss_pred             cCCcCEEEEeCCcH--HHHHHHHHHhhhhhcCcceEEECCCCCHHHHH
Confidence            45799988773321  23444455445555433345554444444443

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.24  E-value=0.008  Score=48.36  Aligned_cols=105  Identities=13%  Similarity=0.028  Sum_probs=69.5

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      +..+|.+|||-|+|+|.+|.++++.-   .+++..|+ ..-.+.+.+.++..+.           .+++++..-|....-
T Consensus       102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----------~~~vt~~hrDVc~~G  170 (314)
T KOG2915|consen  102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----------GDNVTVTHRDVCGSG  170 (314)
T ss_pred             cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----------CcceEEEEeecccCC
Confidence            34579999999999999999999874   36999999 5556677777777764           578888887776543


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .. .....+|.|+. |+.    .+-..+-.+.+.++.+|.-++++.
T Consensus       171 F~-~ks~~aDaVFL-DlP----aPw~AiPha~~~lk~~g~r~csFS  210 (314)
T KOG2915|consen  171 FL-IKSLKADAVFL-DLP----APWEAIPHAAKILKDEGGRLCSFS  210 (314)
T ss_pred             cc-ccccccceEEE-cCC----ChhhhhhhhHHHhhhcCceEEecc
Confidence            11 12456777765 322    222333334446666665555544

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.13  E-value=7.4e-05  Score=51.68  Aligned_cols=96  Identities=14%  Similarity=0.103  Sum_probs=35.2

Q ss_pred             EEeCCCccHHHHHHHHh---C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC-
Q 028673           69 IELGAGCGVAGFGMALL---G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-  141 (205)
Q Consensus        69 LdlGcGtGl~sl~~a~~---g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~-  141 (205)
                      ||+|+..|..++.+++.   +  .+++++|. +. .+..+++++..+.           ..++++...+-.+.  +... 
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----------~~~~~~~~g~s~~~--l~~~~   66 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----------SDRVEFIQGDSPDF--LPSLP   66 (106)
T ss_dssp             --------------------------EEEESS-------------GGG------------BTEEEEES-THHH--HHHHH
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----------CCeEEEEEcCcHHH--HHHcC
Confidence            69999999888777653   2  26999999 53 3344444443322           34577777433221  1111 


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      ..+||+|+. |--+..+....-++.+...++|||.+++
T Consensus        67 ~~~~dli~i-Dg~H~~~~~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   67 DGPIDLIFI-DGDHSYEAVLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             H--EEEEEE-ES---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCEEEEEE-CCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            368999987 4333334455667777778899998765

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.12  E-value=0.0027  Score=51.98  Aligned_cols=123  Identities=20%  Similarity=0.180  Sum_probs=79.9

Q ss_pred             cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhh
Q 028673           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRI  112 (205)
Q Consensus        37 ~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~  112 (205)
                      .+++.+-.++..+..          ..++.+|||++|+.|-=+..++..-   ..|++.|+ +.-+..++.|+++.+.  
T Consensus        68 ~vQd~sS~l~~~~L~----------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--  135 (283)
T PF01189_consen   68 YVQDESSQLVALALD----------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV--  135 (283)
T ss_dssp             EEHHHHHHHHHHHHT----------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---
T ss_pred             Eeccccccccccccc----------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--
Confidence            355555555555443          2267889999999998887777652   46999999 7788999999988764  


Q ss_pred             ccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEccc------ccCCc----------------ChHhHHHHHHHh
Q 028673          113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV------VYAEH----------------LLEPLLQTIFAL  170 (205)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~------~y~~~----------------~~~~ll~~~~~~  170 (205)
                                .++.+...|...... ......||.|+.-.+      +....                ....+++...++
T Consensus       136 ----------~~v~~~~~D~~~~~~-~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~  204 (283)
T PF01189_consen  136 ----------FNVIVINADARKLDP-KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKL  204 (283)
T ss_dssp             ----------SSEEEEESHHHHHHH-HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHC
T ss_pred             ----------ceEEEEeeccccccc-cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHh
Confidence                      345555533332211 112336999976222      11111                123678888889


Q ss_pred             h----CCCcEEEEEEe
Q 028673          171 S----GPKTTILVMFS  182 (205)
Q Consensus       171 l----~~~g~~~i~~~  182 (205)
                      +    +|||+++.+.-
T Consensus       205 ~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  205 LNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             EHHHBEEEEEEEEEES
T ss_pred             hcccccCCCeEEEEec
Confidence            9    99999887754

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.98  E-value=0.0039  Score=51.76  Aligned_cols=94  Identities=15%  Similarity=0.038  Sum_probs=65.8

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEEcC--cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      ...+|+|.|.|.+.-.+...-.+|-+++.  +.+++.+... . .+               |....   ++..  .. .+
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~-~-~g---------------V~~v~---gdmf--q~-~P  235 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYL-A-PG---------------VEHVA---GDMF--QD-TP  235 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhh-c-CC---------------cceec---cccc--cc-CC
Confidence            56899999999887777776566777766  4455544432 2 21               23333   2221  11 34


Q ss_pred             CccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          144 PFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +-|+|+.-.++++..  +..++++.+++.|+|+|.+++...
T Consensus       236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            668999999999854  456999999999999999999876

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.017  Score=44.53  Aligned_cols=133  Identities=14%  Similarity=0.121  Sum_probs=84.6

Q ss_pred             cccccc-HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-cchHHHHHHHHHHhhhh
Q 028673           36 TTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSR  111 (205)
Q Consensus        36 ~~~W~~-~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~  111 (205)
                      .+.|+. ---||..+.....    .....+|.+||=||+-+|..--..+.- | ..|++++. +.+...+-.-++.-   
T Consensus        51 YR~Wnp~RSKLaAaIl~Gl~----~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---  123 (231)
T COG1889          51 YREWNPRRSKLAAAILKGLK----NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---  123 (231)
T ss_pred             eeeeCcchhHHHHHHHcCcc----cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---
Confidence            457754 2234444443211    123457889999999999776666654 4 35999999 66443333222211   


Q ss_pred             hccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchh
Q 028673          112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSL  188 (205)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~  188 (205)
                                 .|+--+-.|...++.....-++.|+|+.-  +-.+...+-+.......|+++|.++++...|.-..
T Consensus       124 -----------~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D--VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdv  187 (231)
T COG1889         124 -----------PNIIPILEDARKPEKYRHLVEKVDVIYQD--VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDV  187 (231)
T ss_pred             -----------CCceeeecccCCcHHhhhhcccccEEEEe--cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccc
Confidence                       24555565656555444445567777663  33456677788888999999999999999888754

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.88  E-value=0.002  Score=52.41  Aligned_cols=39  Identities=28%  Similarity=0.348  Sum_probs=34.3

Q ss_pred             eEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHH
Q 028673           67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~  105 (205)
                      +|+||.||.|-+++.+.+.|.+ |.++|+ +.+++..+.|.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~   42 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANF   42 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhC
Confidence            6999999999999999999998 889999 77888877775

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.87  E-value=0.0076  Score=48.62  Aligned_cols=120  Identities=19%  Similarity=0.209  Sum_probs=83.7

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           60 PSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++.|+.|+=+| ---+.|++++..|.  +|..+|+ +..++...+-++.-+.            .++.+...|..++-
T Consensus       148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~------------~~ie~~~~Dlr~pl  214 (354)
T COG1568         148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY------------NNIEAFVFDLRNPL  214 (354)
T ss_pred             ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc------------cchhheeehhcccC
Confidence            4678899999999 56788888887764  5999999 5588888888777654            46788888887764


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhC-CCcEEEEEEeeccchhHHHHHHhh
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG-PKTTILVMFSLSMFSLTFFCWTRI  196 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~-~~g~~~i~~~~r~~~~~~~~~~~~  196 (205)
                      +. ....+||+.+. |+.+-...+..++..=...|+ +|+.=|+....|..+.+  .|.++
T Consensus       215 pe-~~~~kFDvfiT-DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressid--kW~ei  271 (354)
T COG1568         215 PE-DLKRKFDVFIT-DPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSID--KWREI  271 (354)
T ss_pred             hH-HHHhhCCeeec-CchhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHH--HHHHH
Confidence            22 23578997665 777766666666655444454 55555555556666655  66554

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.87  E-value=0.0081  Score=50.33  Aligned_cols=117  Identities=17%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             CeEEEeCCCccHHHHHHHHhC-C-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           66 KRVIELGAGCGVAGFGMALLG-C-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g-~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+||-||.|-|+..-.+.+.- . +|+.+|+ |+|++.+++|...-..     +..+-..+++++..-|-.+.-  ....
T Consensus       291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~-----N~~sf~dpRv~Vv~dDAf~wl--r~a~  363 (508)
T COG4262         291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRAL-----NQGSFSDPRVTVVNDDAFQWL--RTAA  363 (508)
T ss_pred             ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhh-----ccCCccCCeeEEEeccHHHHH--Hhhc
Confidence            579999999999888888773 3 6999999 8999999976643211     111123346666654332221  1124


Q ss_pred             CCccEEEEcccccCCcC-------hHhHHHHHHHhhCCCcEEEEEEeeccchhHHH
Q 028673          143 PPFDYIIGTDVVYAEHL-------LEPLLQTIFALSGPKTTILVMFSLSMFSLTFF  191 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~-------~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~~~  191 (205)
                      ..||.||.- .. ++..       -.++...+++.++++|.+++-....+...+.|
T Consensus       364 ~~fD~vIVD-l~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vf  417 (508)
T COG4262         364 DMFDVVIVD-LP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVF  417 (508)
T ss_pred             ccccEEEEe-CC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCcee
Confidence            589999874 22 2111       23677778889999999988877666655543

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.83  E-value=0.0032  Score=53.50  Aligned_cols=101  Identities=26%  Similarity=0.246  Sum_probs=71.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCC-ceEEEEeecCCCCCcc
Q 028673           65 GKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG-SIQAVELDWGNEDHIK  139 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~-~i~~~~~dw~~~~~~~  139 (205)
                      +.+|||-=||||+=|+..++-  +. +|++-|+ +++++.+++|++.|+..           + .+.+...|-...-.  
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~-----------~~~~~v~~~DAn~ll~--  116 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE-----------DERIEVSNMDANVLLY--  116 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S-----------GCCEEEEES-HHHHHC--
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc-----------CceEEEehhhHHHHhh--
Confidence            458999999999999999987  33 5999999 88999999999999762           2 45665533332211  


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .....||+|=. |++   ....+++....+..+.||.++++..
T Consensus       117 ~~~~~fD~IDl-DPf---GSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  117 SRQERFDVIDL-DPF---GSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             HSTT-EEEEEE---S---S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             hccccCCEEEe-CCC---CCccHhHHHHHHHhhcCCEEEEecc
Confidence            23678998854 333   4567899999999999999999864

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.80  E-value=0.0047  Score=52.20  Aligned_cols=105  Identities=19%  Similarity=0.169  Sum_probs=72.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhC-CEEEEEcC-cchHHHHH-HHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLK-RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g-~~v~~~D~-~~~l~~~~-~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ...+..++|+|||.|-+....+..+ +++++.|+ +.-+.... .++... +           ..+..+...+..+.   
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l-----------~~k~~~~~~~~~~~---  172 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY-L-----------DNKCNFVVADFGKM---  172 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH-h-----------hhhcceehhhhhcC---
Confidence            3345589999999999999999875 67999998 43222222 222111 1           11222323222222   


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      +..+..||.+.+.+..-+......+++.+.+.++|||.+....
T Consensus       173 ~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  173 PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKE  215 (364)
T ss_pred             CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHH
Confidence            2346789999999999999999999999999999999887653

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.71  E-value=0.0032  Score=52.40  Aligned_cols=106  Identities=13%  Similarity=0.254  Sum_probs=66.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++.-+++||+|.|.|....++-..-.   +++.++.+.++...-..+..|.                .....+|...+-
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv----------------~t~~td~r~s~v  173 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV----------------STEKTDWRASDV  173 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc----------------ccccCCCCCCcc
Confidence            567778999999998864443333211   3666666556666666666663                222355544321


Q ss_pred             c----c-cCCCCccEEEEcccccCCcC---hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          138 I----K-AVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       138 ~----~-~~~~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .    + .....|++++..+=+...+.   +...++.+..++.|||.++|+.+
T Consensus       174 t~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr  226 (484)
T COG5459         174 TEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER  226 (484)
T ss_pred             chhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence            1    0 11346888888876665443   34567777788899999998865

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.64  E-value=0.0049  Score=50.77  Aligned_cols=97  Identities=20%  Similarity=0.186  Sum_probs=62.7

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ...|.+||=+|||. |++.+..|+. |+ +|+.+|. ++-++.|++ +-.-.               +...... ...+.
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~---------------~~~~~~~-~~~~~  229 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV---------------TDPSSHK-SSPQE  229 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE---------------Eeecccc-ccHHH
Confidence            44688999999997 9999988876 77 4999999 778888887 22110               0000000 00010


Q ss_pred             c------ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 I------KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ~------~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      +      ......||+.+-+      .-.+.-+++....++.+|.+.++.
T Consensus       230 ~~~~v~~~~g~~~~d~~~dC------sG~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  230 LAELVEKALGKKQPDVTFDC------SGAEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             HHHHHHhhccccCCCeEEEc------cCchHHHHHHHHHhccCCEEEEec
Confidence            0      0112346666554      677788888888899999977764

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.60  E-value=0.0044  Score=48.73  Aligned_cols=84  Identities=15%  Similarity=0.185  Sum_probs=51.4

Q ss_pred             CCCeEEEeCCCccH-HH-HHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecC-CC-CCc
Q 028673           64 KGKRVIELGAGCGV-AG-FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG-NE-DHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl-~s-l~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~-~~-~~~  138 (205)
                      ++.++||+|.|.-. .- +-.-..|-+.+++|+ +.+++.|+.++..|--          +...++.....-. .. ...
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~----------l~~~I~lr~qk~~~~if~gi  147 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPG----------LERAIRLRRQKDSDAIFNGI  147 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcc----------hhhheeEEeccCcccccccc
Confidence            44578999887531 11 122245778999999 7799999999999821          1223333321100 00 111


Q ss_pred             ccCCCCccEEEEcccccCC
Q 028673          139 KAVAPPFDYIIGTDVVYAE  157 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~  157 (205)
                      ...++.||+.+||+++|..
T Consensus       148 ig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         148 IGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             ccccceeeeEecCCCcchh
Confidence            1225689999999999863

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.58  E-value=0.057  Score=47.73  Aligned_cols=102  Identities=25%  Similarity=0.333  Sum_probs=62.7

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC---
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE---  135 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~---  135 (205)
                      ...+.+|+=+|||. |+.++..|+. |++|+++|. ++.++.+++    .+.               ++...+-.+.   
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes----lGA---------------~~v~i~~~e~~~~  222 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES----MGA---------------EFLELDFEEEGGS  222 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC---------------eEEEecccccccc
Confidence            45688999999997 9999888865 899999999 766665554    222               1111110000   


Q ss_pred             ---------CC--------cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          136 ---------DH--------IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       136 ---------~~--------~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                               .+        +......+|+||.+--.-.......+.+...+.++|||.++....
T Consensus       223 ~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        223 GDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             ccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                     00        000114689999873332222332335888899999998776643

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.58  E-value=0.014  Score=48.83  Aligned_cols=96  Identities=25%  Similarity=0.228  Sum_probs=61.8

Q ss_pred             CCCCCCeEEEeCCC-ccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           61 SKLKGKRVIELGAG-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        61 ~~~~~~~VLdlGcG-tGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ...+|++|+=.|+| .|.+++.+|+ .|++|+++|. ++-.+.+++-    +.              -.  ..++.+.+.
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GA--------------d~--~i~~~~~~~  222 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GA--------------DH--VINSSDSDA  222 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CC--------------cE--EEEcCCchh
Confidence            34468899999997 4677777787 6999999999 6655555542    11              11  222232222


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .....+.||+|+..      .. +..+....++|+++|++.++-..
T Consensus       223 ~~~~~~~~d~ii~t------v~-~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         223 LEAVKEIADAIIDT------VG-PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             hHHhHhhCcEEEEC------CC-hhhHHHHHHHHhcCCEEEEECCC
Confidence            22223349988876      33 56667777888899998777544

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.42  E-value=0.013  Score=47.32  Aligned_cols=108  Identities=16%  Similarity=0.108  Sum_probs=64.0

Q ss_pred             eEEEeCCCc---cHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           67 RVIELGAGC---GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        67 ~VLdlGcGt---Gl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..||||||.   |.. -..|+.   .++|+-+|. |-++..++.-+..+.            .....+...|..+.+.+.
T Consensus        71 QFLDlGsGlPT~~nv-HevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------~g~t~~v~aD~r~p~~iL  137 (267)
T PF04672_consen   71 QFLDLGSGLPTAGNV-HEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------RGRTAYVQADLRDPEAIL  137 (267)
T ss_dssp             EEEEET--S--SS-H-HHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------TSEEEEEE--TT-HHHHH
T ss_pred             eEEEcccCCCCCCCH-hHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------CccEEEEeCCCCCHHHHh
Confidence            599999993   332 233333   678999999 667777777655552            123678888877765321


Q ss_pred             c--------CCCCccEEEEcccccCC---cChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          140 A--------VAPPFDYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       140 ~--------~~~~fD~Ii~~d~~y~~---~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      .        .-.+.=.++...++++.   +....++..+...|.||+.+.+++......
T Consensus       138 ~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~  196 (267)
T PF04672_consen  138 AHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA  196 (267)
T ss_dssp             CSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS
T ss_pred             cCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC
Confidence            1        01233456667777773   467789999999999999999999876543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=96.29  E-value=0.0078  Score=51.26  Aligned_cols=70  Identities=24%  Similarity=0.330  Sum_probs=54.0

Q ss_pred             cccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhh
Q 028673           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS  110 (205)
Q Consensus        33 ~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~  110 (205)
                      ++|..-|.+ .+..++-.-.   +.    .-.|..|-|+.||.|-.++-+++.+++|++-|. +++++.++.|+..|.+
T Consensus       226 DfskVYWns-RL~~Eherls---g~----fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv  296 (495)
T KOG2078|consen  226 DFSKVYWNS-RLSHEHERLS---GL----FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV  296 (495)
T ss_pred             ecceEEeec-cchhHHHHHh---hc----cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcccccc
Confidence            456666984 3333332211   11    225678999999999999999999999999999 9999999999999975

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.26  E-value=0.034  Score=42.49  Aligned_cols=100  Identities=13%  Similarity=0.051  Sum_probs=58.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-C--EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe-ecCCCCCc-
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG-C--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDHI-  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g-~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~-dw~~~~~~-  138 (205)
                      ++.+|||+||-.|..+..+.++. .  .|.++|+-....       ..|               +.+... |..++... 
T Consensus        69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p-------~~G---------------a~~i~~~dvtdp~~~~  126 (232)
T KOG4589|consen   69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP-------PEG---------------ATIIQGNDVTDPETYR  126 (232)
T ss_pred             CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC-------CCC---------------cccccccccCCHHHHH
Confidence            57899999999999999999874 3  499999732110       011               122221 33332210 


Q ss_pred             ----ccCCCCccEEEEcccccCC-----cChHhHHHHHHH-------hhCCCcEEEEEEeeccc
Q 028673          139 ----KAVAPPFDYIIGTDVVYAE-----HLLEPLLQTIFA-------LSGPKTTILVMFSLSMF  186 (205)
Q Consensus       139 ----~~~~~~fD~Ii~~d~~y~~-----~~~~~ll~~~~~-------~l~~~g~~~i~~~~r~~  186 (205)
                          ..++.+.|+|++ |...+.     -++..+++.+.+       ++.|+|.+++-.-.-..
T Consensus       127 ki~e~lp~r~VdvVlS-DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e  189 (232)
T KOG4589|consen  127 KIFEALPNRPVDVVLS-DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE  189 (232)
T ss_pred             HHHHhCCCCcccEEEe-ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence                123568898877 555442     234444444433       35799998887654333

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.15  E-value=0.015  Score=45.16  Aligned_cols=57  Identities=25%  Similarity=0.249  Sum_probs=41.5

Q ss_pred             cccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHH
Q 028673           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR  103 (205)
Q Consensus        39 W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~  103 (205)
                      -+=.+.|.+.+...        ...+|..|||--||+|..++++.+.|-+.+++|+ ++.++.|++
T Consensus       174 ~~kP~~l~~~lI~~--------~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  174 TQKPVELIERLIKA--------STNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             T-S-HHHHHHHHHH--------HS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHh--------hhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            33467777777664        2336889999999999999999999999999999 777777753

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.06  E-value=0.019  Score=47.80  Aligned_cols=111  Identities=21%  Similarity=0.144  Sum_probs=71.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCc-chHH-------HHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLP-------LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~-~~l~-------~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~  134 (205)
                      .+|+-|.|=-.|||.+-+.+|..|+-|+++|++ .++.       .++.|+++-+..          .--+.+...|..+
T Consensus       207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~----------~~fldvl~~D~sn  276 (421)
T KOG2671|consen  207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----------SQFLDVLTADFSN  276 (421)
T ss_pred             CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCc----------chhhheeeecccC
Confidence            368899999999999999999999999999994 4444       345555554421          1224555555554


Q ss_pred             CCCcccCCCCccEEEEcccccCCc----------------------------------ChHhHHHHHHHhhCCCcEEEEE
Q 028673          135 EDHIKAVAPPFDYIIGTDVVYAEH----------------------------------LLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       135 ~~~~~~~~~~fD~Ii~~d~~y~~~----------------------------------~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .. . ..+-.||.|+| |+-|-..                                  ....++.-..+.|..||++.+-
T Consensus       277 ~~-~-rsn~~fDaIvc-DPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w  353 (421)
T KOG2671|consen  277 PP-L-RSNLKFDAIVC-DPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW  353 (421)
T ss_pred             cc-h-hhcceeeEEEe-CCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence            43 1 12558999998 5555410                                  1223455556667889998877


Q ss_pred             Eeeccc
Q 028673          181 FSLSMF  186 (205)
Q Consensus       181 ~~~r~~  186 (205)
                      .+.+..
T Consensus       354 ~p~~~e  359 (421)
T KOG2671|consen  354 LPTITE  359 (421)
T ss_pred             cCchhh
Confidence            664443

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.06  E-value=0.032  Score=44.20  Aligned_cols=83  Identities=24%  Similarity=0.340  Sum_probs=42.3

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHH---HHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR---NVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~---n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+|||.-||.|.=++.+|..|++|++++. |-+..+++.   +...+.....      ....++++...|-.+.-  ...
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~------~~~~ri~l~~~d~~~~L--~~~  148 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLA------EAMRRIQLIHGDALEYL--RQP  148 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHH------HHHHHEEEEES-CCCHC--CCH
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHH------HHHhCCEEEcCCHHHHH--hhc
Confidence            48999999999999999999999999999 433333332   2222110000      01136777775544322  233


Q ss_pred             CCCccEEEEcccccCC
Q 028673          142 APPFDYIIGTDVVYAE  157 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~  157 (205)
                      ..+||+|.. |+.|..
T Consensus       149 ~~s~DVVY~-DPMFp~  163 (234)
T PF04445_consen  149 DNSFDVVYF-DPMFPE  163 (234)
T ss_dssp             SS--SEEEE---S---
T ss_pred             CCCCCEEEE-CCCCCC
Confidence            579999998 777763

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.04  E-value=0.034  Score=46.68  Aligned_cols=100  Identities=22%  Similarity=0.286  Sum_probs=71.0

Q ss_pred             CCeEEEeCCCccHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ..+|+|-=||||+=||..+.- +. +|++-|+ |++++.+++|++.|..            .+..+..-|-...  ....
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------------~~~~v~n~DAN~l--m~~~  118 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------------EDAEVINKDANAL--LHEL  118 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc------------ccceeecchHHHH--HHhc
Confidence            678999999999999999975 45 6999999 8999999999999932            2233333221111  1112


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ...||+|=. |++   ..+.+++....+..+.+|.+.++..
T Consensus       119 ~~~fd~IDi-DPF---GSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         119 HRAFDVIDI-DPF---GSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             CCCccEEec-CCC---CCCchHHHHHHHHhhcCCEEEEEec
Confidence            367898743 333   3456788888888888999888854

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.01  E-value=0.0054  Score=49.95  Aligned_cols=47  Identities=26%  Similarity=0.325  Sum_probs=42.4

Q ss_pred             CCCeEEEeCCCccHHHH-HHHHhCCE-EEEEcC-cchHHHHHHHHHHhhh
Q 028673           64 KGKRVIELGAGCGVAGF-GMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS  110 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl-~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~  110 (205)
                      .+..|.||-+|.|+..+ .+...||+ |++.|. |.+++.+++|++.|+.
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V  243 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV  243 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch
Confidence            35689999999999999 78888987 999999 8899999999999965

>PRK11524 putative methyltransferase; Provisional

Probab=95.87  E-value=0.032  Score=45.59  Aligned_cols=57  Identities=19%  Similarity=0.128  Sum_probs=46.2

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHH
Q 028673           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW  107 (205)
Q Consensus        43 ~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~  107 (205)
                      +-|.+.+...        ...+|..|||--||+|..++++.+.|-+.+++|+ ++.++.+++.+..
T Consensus       195 ~~L~erlI~~--------~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILA--------SSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHH--------hCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            4555555443        2347889999999999999999999999999999 7888988887753

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.87  E-value=0.03  Score=47.21  Aligned_cols=97  Identities=25%  Similarity=0.252  Sum_probs=59.1

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-
Q 028673           64 KGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  138 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-  138 (205)
                      .+.+|+=+|||+ |++++.+++. |+ +|+++|. ++=++.+++-...-                ..+........... 
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----------------~~~~~~~~~~~~~~~  231 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----------------VVVNPSEDDAGAEIL  231 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----------------EeecCccccHHHHHH
Confidence            444899999997 9998888876 65 5999999 66677766521110                00100000000000 


Q ss_pred             cc-CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          139 KA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       139 ~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .. ....+|+++-+      .-....+..+.++++++|++.+.--
T Consensus       232 ~~t~g~g~D~vie~------~G~~~~~~~ai~~~r~gG~v~~vGv  270 (350)
T COG1063         232 ELTGGRGADVVIEA------VGSPPALDQALEALRPGGTVVVVGV  270 (350)
T ss_pred             HHhCCCCCCEEEEC------CCCHHHHHHHHHHhcCCCEEEEEec
Confidence            01 12368888765      2255678888889999999777644

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=95.76  E-value=0.064  Score=39.07  Aligned_cols=86  Identities=17%  Similarity=0.078  Sum_probs=51.6

Q ss_pred             EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC-------
Q 028673           88 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-------  159 (205)
Q Consensus        88 ~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~-------  159 (205)
                      +|++.|+ +++++.+++.++.++.           .+++++..-.=.+...... .+++|.++.| .-|-+..       
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----------~~~v~li~~sHe~l~~~i~-~~~v~~~iFN-LGYLPggDk~i~T~   67 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGL-----------EDRVTLILDSHENLDEYIP-EGPVDAAIFN-LGYLPGGDKSITTK   67 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT------------GSGEEEEES-GGGGGGT---S--EEEEEEE-ESB-CTS-TTSB--
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCC-----------CCcEEEEECCHHHHHhhCc-cCCcCEEEEE-CCcCCCCCCCCCcC
Confidence            5899999 8899999999988854           3467776643333322111 1479988876 2243321       


Q ss_pred             hH---hHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          160 LE---PLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       160 ~~---~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      .+   ..++.+.++|+|||.+.++......
T Consensus        68 ~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~   97 (140)
T PF06962_consen   68 PETTLKALEAALELLKPGGIITIVVYPGHP   97 (140)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEE--STC
T ss_pred             cHHHHHHHHHHHHhhccCCEEEEEEeCCCC
Confidence            22   4556666778999998777654443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.75  E-value=0.12  Score=43.12  Aligned_cols=95  Identities=21%  Similarity=0.232  Sum_probs=54.7

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .++.+||=.|||. |+.++.+++. |+ +|+++|. ++-++.+++    .+..           .-+.....++.   ..
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~-----------~vi~~~~~~~~---~~  229 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD-----------KLVNPQNDDLD---HY  229 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc-----------EEecCCcccHH---HH
Confidence            3678899899975 7777777764 77 5999998 665555543    2210           00000000111   11


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ....+.+|+|+-+      ...+..+....++++++|++++.-
T Consensus       230 ~~~~g~~D~vid~------~G~~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        230 KAEKGYFDVSFEV------SGHPSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             hccCCCCCEEEEC------CCCHHHHHHHHHHhhcCCEEEEEc
Confidence            1112358888754      222346667778889999987764

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.71  E-value=0.01  Score=48.94  Aligned_cols=70  Identities=21%  Similarity=0.239  Sum_probs=45.5

Q ss_pred             eEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      +++||-||.|.+++.+.+.|.+ |.++|+ +.+.+..+.|..                   .....|..+........ .
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------------~~~~~Di~~~~~~~l~~-~   61 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------------EVICGDITEIDPSDLPK-D   61 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------------EEEESHGGGCHHHHHHH-T
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------------ccccccccccccccccc-c
Confidence            6899999999999999999987 899999 777777777754                   22333333332111112 5


Q ss_pred             ccEEEEcccccC
Q 028673          145 FDYIIGTDVVYA  156 (205)
Q Consensus       145 fD~Ii~~d~~y~  156 (205)
                      +|+++++.+.-.
T Consensus        62 ~D~l~ggpPCQ~   73 (335)
T PF00145_consen   62 VDLLIGGPPCQG   73 (335)
T ss_dssp             -SEEEEE---TT
T ss_pred             ceEEEeccCCce
Confidence            999999977643

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=95.55  E-value=0.16  Score=43.47  Aligned_cols=108  Identities=19%  Similarity=0.190  Sum_probs=70.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|-||||+.|-.|-=+.++|.+ .  ..|++-|. .+-+..++.|+.+.+.            .+..+..+|-..+..
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------------~ntiv~n~D~~ef~~  306 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------------TNTIVSNYDGREFPE  306 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------------CceEEEccCcccccc
Confidence            347889999999987555555543 3  24999999 6678899999988764            334444544433321


Q ss_pred             cccCCCCccEEEE----cc--cccCC----------------cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          138 IKAVAPPFDYIIG----TD--VVYAE----------------HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       138 ~~~~~~~fD~Ii~----~d--~~y~~----------------~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .. ..++||-|+.    |.  +++..                +....|+.....++++||.++.+..
T Consensus       307 ~~-~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC  372 (460)
T KOG1122|consen  307 KE-FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC  372 (460)
T ss_pred             cc-cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence            11 2348999963    33  34332                2244677777888999999887754

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=95.49  E-value=0.11  Score=42.93  Aligned_cols=117  Identities=19%  Similarity=0.238  Sum_probs=65.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcc-hHHHHHHHHHHhhhhh--------------------ccCCC-----
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRI--------------------SQMNP-----  117 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~--------------------~~~~~-----  117 (205)
                      +..+||-=|||.|.++.-+|..|..+-+-+.+- |  ++..++-.|....                    .|-.|     
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~M--li~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD  227 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFM--LICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD  227 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhcccccccHHHHHH--HHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence            345899999999999999999999887776643 3  2233333332211                    00000     


Q ss_pred             ---CC--CCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          118 ---GS--DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       118 ---~~--~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                         .+  ...+......+|+.+........+.||+|+.+--|=-.++.-.-++++.+.|+|||..+=.-|
T Consensus       228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGP  297 (369)
T KOG2798|consen  228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGP  297 (369)
T ss_pred             ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccc
Confidence               00  011111122222222221122234799999883332345666788899999999997664433

>PRK13699 putative methylase; Provisional

Probab=95.43  E-value=0.069  Score=42.26  Aligned_cols=45  Identities=13%  Similarity=0.021  Sum_probs=39.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHh
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (205)
                      +|..|||--||+|..++++.+.|-+.+++|+ ++..+.+.+.++..
T Consensus       163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999 77888887776553

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.42  E-value=0.013  Score=40.47  Aligned_cols=30  Identities=20%  Similarity=0.247  Sum_probs=27.3

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCEEEEEcC
Q 028673           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ   94 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~   94 (205)
                      .....|||||.|++--.+.+-|.+-.++|.
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~   88 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDA   88 (112)
T ss_pred             CCceEEccCCchHHHHHHHhCCCCcccccc
Confidence            346999999999999999999999999997

; GO: 0008168 methyltransferase activity

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.28  E-value=0.039  Score=46.09  Aligned_cols=75  Identities=21%  Similarity=0.205  Sum_probs=50.7

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ..+++||-||.|-+++.+...|.+ +.++|+ +.+++..+.|....                 .+...|...........
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~-----------------~~~~~di~~~~~~~~~~   65 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHG-----------------DIILGDIKELDGEALRK   65 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCC-----------------ceeechHhhcChhhccc
Confidence            357999999999999999999998 888999 77888777775421                 22222222221111111


Q ss_pred             CCccEEEEcccccC
Q 028673          143 PPFDYIIGTDVVYA  156 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~  156 (205)
                      ..+|+|+++.+.-.
T Consensus        66 ~~~DvligGpPCQ~   79 (328)
T COG0270          66 SDVDVLIGGPPCQD   79 (328)
T ss_pred             cCCCEEEeCCCCcc
Confidence            17899999987754

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.09  E-value=0.33  Score=37.73  Aligned_cols=105  Identities=19%  Similarity=0.158  Sum_probs=54.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      +.+.|+|+|.-.|--.+..|..      .++|+++|+ .....  +..++.+           ...++|++.+.+..+.+
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~h-----------p~~~rI~~i~Gds~d~~   98 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESH-----------PMSPRITFIQGDSIDPE   98 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG---------------TTEEEEES-SSSTH
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhc-----------cccCceEEEECCCCCHH
Confidence            6689999999887666655532      247999999 33211  1111111           22468999998777664


Q ss_pred             Ccc---cC--CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          137 HIK---AV--APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       137 ~~~---~~--~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ...   ..  .....+|+- |.=+..++.-.-++....++++|+.+++.+.
T Consensus        99 ~~~~v~~~~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~Y~IVeDt  148 (206)
T PF04989_consen   99 IVDQVRELASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGSYLIVEDT  148 (206)
T ss_dssp             HHHTSGSS----SSEEEEE-SS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred             HHHHHHHhhccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence            321   11  223344443 5556666777788889999999998887753

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.09  E-value=0.034  Score=48.46  Aligned_cols=96  Identities=16%  Similarity=0.238  Sum_probs=62.6

Q ss_pred             CeEEEeCCCccHHHHHHHHhCC---EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           66 KRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ..|+|+.+|.|-++.++....-   .|+-++.++.+..+-.    -|               .--...||.+....  -+
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIyd----RG---------------LIG~yhDWCE~fsT--YP  425 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYD----RG---------------LIGVYHDWCEAFST--YP  425 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhh----cc---------------cchhccchhhccCC--CC
Confidence            3699999999966555554432   3444443443332221    12               12346788876533  35


Q ss_pred             CCccEEEEcccccC---CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          143 PPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~---~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .+||+|-++.++-.   .-.++.++-.+.++|+|+|.++|-+.
T Consensus       426 RTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~  468 (506)
T PF03141_consen  426 RTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT  468 (506)
T ss_pred             cchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence            79999988876633   33567888899999999999998654

; GO: 0008168 methyltransferase activity

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=95.06  E-value=0.69  Score=39.47  Aligned_cols=136  Identities=14%  Similarity=0.119  Sum_probs=85.7

Q ss_pred             cCeEEEEEeCCCCcc-ccccccccHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcc
Q 028673           19 LGHQLQFSQDPNSKH-LGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE   96 (205)
Q Consensus        19 ~~~~~~i~q~~~~~~-~g~~~W~~~~-~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~   96 (205)
                      ..++++++-+|.... .....|+++. .|.+++...         ... .+||=++=.-|.++..++..+.. ..+|---
T Consensus         7 ~~~~~~l~r~p~~~~~~~l~awdaade~ll~~~~~~---------~~~-~~~~i~nd~fGal~~~l~~~~~~-~~~ds~~   75 (378)
T PRK15001          7 GFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDT---------EIR-GPVLILNDAFGALSCALAEHKPY-SIGDSYI   75 (378)
T ss_pred             CCceeEEEECCCCCCcCcccccccHHHHHHHHHhhc---------ccC-CCEEEEcCchhHHHHHHHhCCCC-eeehHHH
Confidence            336788888776444 4488999875 334444332         112 27999999999999999865543 3366533


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc---ChHhHHHHHHHhhCC
Q 028673           97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---LLEPLLQTIFALSGP  173 (205)
Q Consensus        97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~---~~~~ll~~~~~~l~~  173 (205)
                      .-..++.|++.|+..          .+.++...  -.     ...+..+|+|+.    |.+.   ..+..+..+...+.+
T Consensus        76 ~~~~~~~n~~~n~~~----------~~~~~~~~--~~-----~~~~~~~d~vl~----~~PK~~~~l~~~l~~l~~~l~~  134 (378)
T PRK15001         76 SELATRENLRLNGID----------ESSVKFLD--ST-----ADYPQQPGVVLI----KVPKTLALLEQQLRALRKVVTS  134 (378)
T ss_pred             HHHHHHHHHHHcCCC----------cccceeec--cc-----ccccCCCCEEEE----EeCCCHHHHHHHHHHHHhhCCC
Confidence            456788999999652          11122221  11     122456898876    4444   345667777888999


Q ss_pred             CcEEEEEEeeccc
Q 028673          174 KTTILVMFSLSMF  186 (205)
Q Consensus       174 ~g~~~i~~~~r~~  186 (205)
                      ++.++.....+.-
T Consensus       135 ~~~ii~g~~~k~i  147 (378)
T PRK15001        135 DTRIIAGAKARDI  147 (378)
T ss_pred             CCEEEEEEecCCC
Confidence            9998766665543

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=94.73  E-value=0.45  Score=42.04  Aligned_cols=108  Identities=14%  Similarity=0.064  Sum_probs=67.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C-----CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+|.|--||+|.+-+.+++. +     ..+++.|. +....+++.|+-.++...           .+.....+--..+
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----------~~~i~~~dtl~~~  254 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----------DANIRHGDTLSNP  254 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----------cccccccccccCC
Confidence            3458999999998655555432 2     33899998 789999999999987521           1111111100000


Q ss_pred             Cc--ccCCCCccEEEEcccccCC-------------------------cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          137 HI--KAVAPPFDYIIGTDVVYAE-------------------------HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       137 ~~--~~~~~~fD~Ii~~d~~y~~-------------------------~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..  .....+||+|+++++....                         .....++..+...++|+|++-++.+
T Consensus       255 ~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~  327 (489)
T COG0286         255 KHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP  327 (489)
T ss_pred             cccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence            00  1134679999999888610                         0124677888888999887666654

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=94.69  E-value=0.6  Score=39.90  Aligned_cols=24  Identities=4%  Similarity=-0.086  Sum_probs=17.4

Q ss_pred             hHHHHHHHhhCCCcEEEEEEeecc
Q 028673          162 PLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       162 ~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .+++.-.+-|.|||+++++...|.
T Consensus       218 ~FL~~Ra~ELvpGG~mvl~~~Gr~  241 (386)
T PLN02668        218 GFLRARAQEMKRGGAMFLVCLGRT  241 (386)
T ss_pred             HHHHHHHHHhccCcEEEEEEecCC
Confidence            344444555889999999987774

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.53  E-value=0.46  Score=39.74  Aligned_cols=92  Identities=18%  Similarity=0.225  Sum_probs=52.4

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcCc----chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           63 LKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQI----EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~~----~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..+.+||=+|||. |.+++.+++. |++|++++..    +-++.+    +..+.               +.  .+..+.+
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~----~~~Ga---------------~~--v~~~~~~  229 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV----EELGA---------------TY--VNSSKTP  229 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH----HHcCC---------------EE--ecCCccc
Confidence            3678999999975 7777766654 7889999862    222222    22221               11  1111110


Q ss_pred             Cc-ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          137 HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       137 ~~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .. ......+|+|+-+      ......+....+.++++|++++.-
T Consensus       230 ~~~~~~~~~~d~vid~------~g~~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         230 VAEVKLVGEFDLIIEA------TGVPPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             hhhhhhcCCCCEEEEC------cCCHHHHHHHHHHccCCcEEEEEe
Confidence            00 0112468888765      222346677778899999887654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=94.53  E-value=0.55  Score=37.46  Aligned_cols=129  Identities=13%  Similarity=0.136  Sum_probs=68.7

Q ss_pred             cccccccccc-HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hCCE--EEEEcC-cc----hHHHHH
Q 028673           32 KHLGTTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCN--VITTDQ-IE----VLPLLK  102 (205)
Q Consensus        32 ~~~g~~~W~~-~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~-~g~~--v~~~D~-~~----~l~~~~  102 (205)
                      ...-.++|+. ---||.-+.--..+    .....|.+||=||+++|..--..+. .|.+  |++++. +-    .+.+++
T Consensus       127 ~kvEyRVWnPfrSKLAA~I~gGvdn----ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk  202 (317)
T KOG1596|consen  127 GKVEYRVWNPFRSKLAAGILGGVDN----IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK  202 (317)
T ss_pred             CcEEEEEeChHHHHHHHHhhcCccc----eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh
Confidence            3566778864 22344444322111    2345789999999999965444443 4665  899988 32    223332


Q ss_pred             HHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          103 RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       103 ~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +                  ..||.-+.-|...+......-+-.|+|++ |+ -.++...-+.-.....|+++|-++++..
T Consensus       203 k------------------RtNiiPIiEDArhP~KYRmlVgmVDvIFa-Dv-aqpdq~RivaLNA~~FLk~gGhfvisik  262 (317)
T KOG1596|consen  203 K------------------RTNIIPIIEDARHPAKYRMLVGMVDVIFA-DV-AQPDQARIVALNAQYFLKNGGHFVISIK  262 (317)
T ss_pred             c------------------cCCceeeeccCCCchheeeeeeeEEEEec-cC-CCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence            2                  12344444333333322222223444433 21 1233334445556778999999999976


Q ss_pred             ec
Q 028673          183 LS  184 (205)
Q Consensus       183 ~r  184 (205)
                      ..
T Consensus       263 an  264 (317)
T KOG1596|consen  263 AN  264 (317)
T ss_pred             cc
Confidence            43

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.51  E-value=0.031  Score=48.50  Aligned_cols=104  Identities=23%  Similarity=0.190  Sum_probs=72.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~  138 (205)
                      ++.+|||-=|+||+-+|..|+.  |. +|++-|. +.+++..++|++.|+.           .+.++....|..... ..
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----------~~ive~~~~DA~~lM~~~  177 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----------EDIVEPHHSDANVLMYEH  177 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----------hhhcccccchHHHHHHhc
Confidence            4568999999999999999976  44 4999999 7899999999999954           223333333322211 01


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ......||+|=. |++   .....++....+.+..||.++++..
T Consensus       178 ~~~~~~FDvIDL-DPy---Gs~s~FLDsAvqav~~gGLL~vT~T  217 (525)
T KOG1253|consen  178 PMVAKFFDVIDL-DPY---GSPSPFLDSAVQAVRDGGLLCVTCT  217 (525)
T ss_pred             cccccccceEec-CCC---CCccHHHHHHHHHhhcCCEEEEEec
Confidence            122468998854 333   3445778888888889999888753

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=94.46  E-value=0.64  Score=39.02  Aligned_cols=32  Identities=22%  Similarity=0.209  Sum_probs=21.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh------------C------CEEEEEcCc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL------------G------CNVITTDQI   95 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~------------g------~~v~~~D~~   95 (205)
                      +.-+|+|+||.+|-.++.+...            +      -+|+..|+|
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP   65 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLP   65 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-T
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC
Confidence            3358999999999888877532            1      269999994

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=94.42  E-value=0.39  Score=35.94  Aligned_cols=116  Identities=16%  Similarity=0.118  Sum_probs=77.1

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHH-HHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCC
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGM-ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS  119 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~-a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~  119 (205)
                      ++..|++.+...         ...+.+|+=|||=+-...+.- ...+.+++..|++.=       .+..           
T Consensus        11 T~~~l~~~l~~~---------~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R-------F~~~-----------   63 (162)
T PF10237_consen   11 TAEFLARELLDG---------ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR-------FEQF-----------   63 (162)
T ss_pred             HHHHHHHHHHHh---------cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch-------HHhc-----------
Confidence            355677777663         124578999998765554444 112446999998541       1111           


Q ss_pred             CCCCceEEEEeecCCCCCcc-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          120 DLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       120 ~~~~~i~~~~~dw~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                        .++ .+...|...+..++ ...++||+|++-+++...+.......+++.++++++.++++...+..
T Consensus        64 --~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~  128 (162)
T PF10237_consen   64 --GGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEME  128 (162)
T ss_pred             --CCc-ceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHHH
Confidence              112 45566666665443 22569999999777776777788889999999999999988776554

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=94.33  E-value=0.048  Score=45.30  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=32.7

Q ss_pred             EEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHH
Q 028673           68 VIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (205)
Q Consensus        68 VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~  105 (205)
                      |+||.||.|-+++.+.+.|.+ +.++|+ +.+++..+.|.
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~   40 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF   40 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence            689999999999999999998 678999 66778777765

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.28  E-value=0.17  Score=44.10  Aligned_cols=98  Identities=18%  Similarity=0.288  Sum_probs=65.2

Q ss_pred             eEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHH-HHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLK-RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~-~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      ++|.+|||.--++..+-+-|.+ |+.+|+ +-+++.+. .|++.+              ..+.+...+...   ....++
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~--------------~~~~~~~~d~~~---l~fedE  113 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER--------------PEMQMVEMDMDQ---LVFEDE  113 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC--------------cceEEEEecchh---ccCCCc
Confidence            8999999999888888888987 999999 44555443 443222              234555543332   234467


Q ss_pred             CccEEEEcccccC----------CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          144 PFDYIIGTDVVYA----------EHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       144 ~fD~Ii~~d~~y~----------~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      +||+|+.-..+-+          .......+..+.+.++++|+.+...
T Consensus       114 SFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  114 SFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             ceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence            8999876554432          2234466788889999999855443

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.12  E-value=0.32  Score=39.99  Aligned_cols=84  Identities=11%  Similarity=-0.006  Sum_probs=51.1

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++++||=+|||. |++++.+|+. |++ |+++|. ++-++.+...    ..              ++.     .+.    
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~--------------i~~-----~~~----  196 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV--------------LDP-----EKD----  196 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc--------------cCh-----hhc----
Confidence            567888889985 8887777764 887 777787 4443333221    00              000     000    


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                       ....+|+|+-+      .-.+..+....++++++|++++.-
T Consensus       197 -~~~g~Dvvid~------~G~~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       197 -PRRDYRAIYDA------SGDPSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             -cCCCCCEEEEC------CCCHHHHHHHHHhhhcCcEEEEEe
Confidence             12357877754      233456677778899999988654

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=94.01  E-value=0.27  Score=40.67  Aligned_cols=45  Identities=13%  Similarity=0.075  Sum_probs=37.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHH
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW  107 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~  107 (205)
                      .++..++|.=+|.|--+..+++.  ..+|+++|. +++++.+++.++.
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~   66 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD   66 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            35678999999999999988875  367999999 8899999887754

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=93.85  E-value=0.052  Score=44.02  Aligned_cols=96  Identities=19%  Similarity=0.159  Sum_probs=59.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+..++|.|||.|-....-  -..-+++.|+ ...+..+++   .+.             +  ....   .+.-..+...
T Consensus        45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~---~~~-------------~--~~~~---ad~l~~p~~~  101 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKR---SGG-------------D--NVCR---ADALKLPFRE  101 (293)
T ss_pred             CcceeeecccCCcccCcCC--Ccceeeecchhhhhcccccc---CCC-------------c--eeeh---hhhhcCCCCC
Confidence            4778999999998322110  1224788888 444444332   110             0  1111   1111223346


Q ss_pred             CCccEEEEcccccCCcC---hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          143 PPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .+||.+++..+++|...   -..+++.+.+.++|||..++-.-
T Consensus       102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen  102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            78999999999998544   44788888889999999776644

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=93.82  E-value=0.28  Score=39.19  Aligned_cols=105  Identities=15%  Similarity=0.113  Sum_probs=56.9

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ..+|+|||||.=-+++.....  ++.+++.|+ ..+++.+..-+..-+.             ...+...|.-..    ..
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-------------~~~~~v~Dl~~~----~~  168 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-------------PHDARVRDLLSD----PP  168 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--------------CEEEEEE-TTTS----HT
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-------------CcceeEeeeecc----CC
Confidence            468999999987666655544  468999999 7788888877665532             345555443322    13


Q ss_pred             CCCccEEEEcccccCCcCh--HhHHHHHHHhhCCCcEEEEEEeeccchh
Q 028673          142 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILVMFSLSMFSL  188 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~i~~~~r~~~~  188 (205)
                      ....|+.+.-=++.-.+..  ...++.+..+  ..-.+++++|.|.-..
T Consensus       169 ~~~~DlaLllK~lp~le~q~~g~g~~ll~~~--~~~~~vVSfPtrSL~g  215 (251)
T PF07091_consen  169 KEPADLALLLKTLPCLERQRRGAGLELLDAL--RSPHVVVSFPTRSLGG  215 (251)
T ss_dssp             TSEESEEEEET-HHHHHHHSTTHHHHHHHHS--CESEEEEEEES-----
T ss_pred             CCCcchhhHHHHHHHHHHHhcchHHHHHHHh--CCCeEEEecccccccc
Confidence            4568888876333211111  1112222222  3456888998776543

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.81  E-value=0.28  Score=36.19  Aligned_cols=45  Identities=13%  Similarity=0.175  Sum_probs=36.6

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhh
Q 028673           66 KRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS  110 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~  110 (205)
                      .+.+|||+|-|.+-+.+++.|.. -+++++ |-.+...+..+-+.+.
T Consensus        74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~  120 (199)
T KOG4058|consen   74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC  120 (199)
T ss_pred             CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc
Confidence            47999999999999999999965 899999 6577777766655554

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=93.62  E-value=1.4  Score=35.27  Aligned_cols=130  Identities=9%  Similarity=0.075  Sum_probs=87.1

Q ss_pred             cccc---cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhh
Q 028673           37 TVWD---ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI  112 (205)
Q Consensus        37 ~~W~---~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~  112 (205)
                      ++|.   ....|..|+..-.       ....+.+ |..=||+=.++-.+.+..-++.++++ |+=...++.|+...    
T Consensus        66 RL~~a~~lpa~l~~yl~~i~-------~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d----  133 (279)
T COG2961          66 RLWQAADLPAELEPYLDAVR-------QLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGD----  133 (279)
T ss_pred             HHHhcCCchHHHHHHHHHHH-------HhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCC----
Confidence            4663   3456677775531       1222333 88888888877777777788999999 87667777777633    


Q ss_pred             ccCCCCCCCCCceEEEEee-cCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhC--CCcEEEEEEeeccchh
Q 028673          113 SQMNPGSDLLGSIQAVELD-WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILVMFSLSMFSL  188 (205)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~d-w~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~--~~g~~~i~~~~r~~~~  188 (205)
                                .++.+...| |...-....+.++=-+|+.-+++-....++.+++++.+.++  ++|+..|=|+......
T Consensus       134 ----------~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~  202 (279)
T COG2961         134 ----------RRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQ  202 (279)
T ss_pred             ----------cceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHH
Confidence                      356776644 22221122223455788886666668889999999998876  7888888888666654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.62  E-value=0.99  Score=40.05  Aligned_cols=99  Identities=26%  Similarity=0.308  Sum_probs=59.0

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC----
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN----  134 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~----  134 (205)
                      ..++.+|+=+|||. |+.++.+++ +|++|+++|. ++.++.++.    .+.               ++...+..+    
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~----lGa---------------~~v~v~~~e~g~~  221 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS----MGA---------------EFLELDFKEEGGS  221 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC---------------eEEeccccccccc
Confidence            34568999999996 888777665 4899999999 555454443    121               111111100    


Q ss_pred             ----------CCC------cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          135 ----------EDH------IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       135 ----------~~~------~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                                ...      +...-..+|+|+.+-.+--.....-+.+...+.+|||+.++=
T Consensus       222 ~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       222 GDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             cccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence                      000      111135699998875454433433466777788888887663

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=93.43  E-value=0.32  Score=41.34  Aligned_cols=120  Identities=14%  Similarity=0.118  Sum_probs=69.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHH-HhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMA-LLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a-~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .-++....|||+|.|-+-.+.| ..+++ -+++++ ...-+.+..|...+.....-.+   .....+..+..++.+....
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG---k~~~~~~~i~gsf~~~~~v  266 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG---KKPNKIETIHGSFLDPKRV  266 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC---CCcCceeecccccCCHHHH
Confidence            3356789999999985555544 44443 555555 3333344433333211000000   0123456666555554433


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ......-++|+.+.+-|.++..-.+- .+..-+++|.+++=.-+.+.
T Consensus       267 ~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~~  312 (419)
T KOG3924|consen  267 TEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISSKPLVP  312 (419)
T ss_pred             HHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEeccccccc
Confidence            34456789999999998877666555 66666788888887766544

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.36  E-value=0.23  Score=42.21  Aligned_cols=42  Identities=31%  Similarity=0.374  Sum_probs=31.6

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHH
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKR  103 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~  103 (205)
                      ..++.+||.+|||+ |...+.+|+. |. +|+++|. ++.++.+++
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~  227 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS  227 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            34678999999987 8777777765 66 5999998 666666654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.07  E-value=0.78  Score=38.27  Aligned_cols=90  Identities=16%  Similarity=0.030  Sum_probs=52.6

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHHh--C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           63 LKGKRVIELGAGC-GVAGFGMALL--G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~~--g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..|.+||=+|||. |++.+.++++  | ++|+++|. ++-++.++.    .+.              ... .-++.    
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--------------~~~-~~~~~----  218 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--------------TYL-IDDIP----  218 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--------------eee-hhhhh----
Confidence            3578999999985 8777666653  4 46999998 554455442    110              000 00111    


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                         ....+|+|+-+  .-. ...+..+....++++++|++++.-
T Consensus       219 ---~~~g~d~viD~--~G~-~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         219 ---EDLAVDHAFEC--VGG-RGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             ---hccCCcEEEEC--CCC-CccHHHHHHHHHhCcCCcEEEEEe
Confidence               01247887743  211 113456777778899999987654

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.06  E-value=1.7  Score=33.72  Aligned_cols=77  Identities=26%  Similarity=0.347  Sum_probs=44.8

Q ss_pred             CCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++++||=.|++.|+ |..++    +.|++|++++. ++-.+.+...+...              .++.....|+.+.+..
T Consensus         4 ~~~~vlItGa~g~i-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~~   68 (238)
T PRK05786          4 KGKKVAIIGVSEGL-GYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--------------GNIHYVVGDVSSTESA   68 (238)
T ss_pred             CCcEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCeEEEECCCCCHHHH
Confidence            57899999996543 44443    45889999998 54444333322221              2466777777765432


Q ss_pred             cc-------CCCCccEEEEccccc
Q 028673          139 KA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       139 ~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ..       .-+++|.++.+--.+
T Consensus        69 ~~~~~~~~~~~~~id~ii~~ag~~   92 (238)
T PRK05786         69 RNVIEKAAKVLNAIDGLVVTVGGY   92 (238)
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCCc
Confidence            11       123578777665433

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.03  E-value=0.57  Score=38.66  Aligned_cols=98  Identities=15%  Similarity=0.142  Sum_probs=57.0

Q ss_pred             CeEEEeCCCc--cHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        66 ~~VLdlGcGt--Gl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+|+=+|||.  |+++..+++.|.+|++++. ++-++.+++   .++..+...       ............    ....
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~---~~Gl~i~~~-------g~~~~~~~~~~~----~~~~   68 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ---AGGLTLVEQ-------GQASLYAIPAET----ADAA   68 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh---cCCeEEeeC-------CcceeeccCCCC----cccc
Confidence            4689999996  5778888888999999998 444444443   222211000       000110100011    1123


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ++||+|+.+   -.....+..++.+..++.+++.++..
T Consensus        69 ~~~D~viv~---vK~~~~~~al~~l~~~l~~~t~vv~l  103 (305)
T PRK05708         69 EPIHRLLLA---CKAYDAEPAVASLAHRLAPGAELLLL  103 (305)
T ss_pred             cccCEEEEE---CCHHhHHHHHHHHHhhCCCCCEEEEE
Confidence            589999876   22234567788888888888865554

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=92.87  E-value=2.9  Score=32.73  Aligned_cols=112  Identities=15%  Similarity=0.205  Sum_probs=61.2

Q ss_pred             CCeEEEeCCCcc----HHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-C
Q 028673           65 GKRVIELGAGCG----VAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (205)
Q Consensus        65 ~~~VLdlGcGtG----l~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~  136 (205)
                      -+.++|..|+-|    .+++++|.+  |.+++.+-- ++.+...++.+...+.           .+.+++..   ++. +
T Consensus        42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----------~~~vEfvv---g~~~e  107 (218)
T PF07279_consen   42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----------SDVVEFVV---GEAPE  107 (218)
T ss_pred             ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----------cccceEEe---cCCHH
Confidence            467999976533    334444433  677555544 4445555555544432           23346554   432 2


Q ss_pred             CcccCCCCccEEEEcccccCCcChH-hHHHHHHHhhCCCcEEEEEEeeccchhHHHHHHh
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLE-PLLQTIFALSGPKTTILVMFSLSMFSLTFFCWTR  195 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~-~ll~~~~~~l~~~g~~~i~~~~r~~~~~~~~~~~  195 (205)
                      .....-...|+++. ||=  .+++. .+++.+.  ++|.|.++++++.......-|.|..
T Consensus       108 ~~~~~~~~iDF~vV-Dc~--~~d~~~~vl~~~~--~~~~GaVVV~~Na~~r~~~~~~w~~  162 (218)
T PF07279_consen  108 EVMPGLKGIDFVVV-DCK--REDFAARVLRAAK--LSPRGAVVVCYNAFSRSTNGFSWRS  162 (218)
T ss_pred             HHHhhccCCCEEEE-eCC--chhHHHHHHHHhc--cCCCceEEEEeccccCCcCCccHHH
Confidence            12222346888877 332  34444 6666543  6678999999886655444566755

The function of this family is unknown.

>PRK10458 DNA cytosine methylase; Provisional

Probab=92.78  E-value=0.34  Score=42.50  Aligned_cols=41  Identities=29%  Similarity=0.319  Sum_probs=34.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHH
Q 028673           65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~  105 (205)
                      .-+++||-||.|-+++.+-..|.+ |.++|+ +.+.+..+.|.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence            458999999999999988888988 788899 66777777764

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=92.73  E-value=0.38  Score=34.34  Aligned_cols=43  Identities=23%  Similarity=0.348  Sum_probs=29.8

Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCc-cHHHHHHHHhCCEEEEEcC-cc
Q 028673           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC-GVAGFGMALLGCNVITTDQ-IE   96 (205)
Q Consensus        44 ~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGt-Gl~sl~~a~~g~~v~~~D~-~~   96 (205)
                      -+|+|+.+..          ...+|+|+|-|. --.+..++..|..|++||+ +.
T Consensus         3 ~~a~~ia~~~----------~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~   47 (127)
T PF03686_consen    3 DFAEYIARLN----------NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR   47 (127)
T ss_dssp             HHHHHHHHHS-----------SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred             hHHHHHHHhC----------CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence            4788887642          234999999996 4678888889999999999 54

; PDB: 2K4M_A.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=92.69  E-value=0.24  Score=38.73  Aligned_cols=121  Identities=16%  Similarity=0.122  Sum_probs=62.1

Q ss_pred             CeEEEeCCCccHHHHHHHHh-CC---EEEEEcC-cchHHHHHHHHHHhh---hhh----------ccCCCC---------
Q 028673           66 KRVIELGAGCGVAGFGMALL-GC---NVITTDQ-IEVLPLLKRNVEWNT---SRI----------SQMNPG---------  118 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~-g~---~v~~~D~-~~~l~~~~~n~~~n~---~~~----------~~~~~~---------  118 (205)
                      -++-|=.||.|.+--.+..+ +.   +|+++|+ +++++.+++|+..-.   +..          ....|+         
T Consensus        53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~  132 (246)
T PF11599_consen   53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD  132 (246)
T ss_dssp             EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            47999999999665555433 32   5999999 789999999986421   100          000000         


Q ss_pred             --------CCCCCceEEEEeecCCCCCc--ccCCCCccEEEEcccccCC-c---------ChHhHHHHHHHhhCCCcEEE
Q 028673          119 --------SDLLGSIQAVELDWGNEDHI--KAVAPPFDYIIGTDVVYAE-H---------LLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       119 --------~~~~~~i~~~~~dw~~~~~~--~~~~~~fD~Ii~~d~~y~~-~---------~~~~ll~~~~~~l~~~g~~~  178 (205)
                              ........+...|..+....  .......|+|+. |+-|-. .         ....++..+...|.+++++.
T Consensus       133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViT-DlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~  211 (246)
T PF11599_consen  133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVIT-DLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA  211 (246)
T ss_dssp             HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEE-E--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred             HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEe-cCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence                    01122245555444433211  112334687766 777762 1         24478999999996666666


Q ss_pred             EEEeeccch
Q 028673          179 VMFSLSMFS  187 (205)
Q Consensus       179 i~~~~r~~~  187 (205)
                      ++...|...
T Consensus       212 v~~k~~Ki~  220 (246)
T PF11599_consen  212 VSDKGRKIP  220 (246)
T ss_dssp             EEESSSS--
T ss_pred             EecCCcccc
Confidence            655544433

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=92.59  E-value=0.51  Score=38.14  Aligned_cols=110  Identities=19%  Similarity=0.229  Sum_probs=68.2

Q ss_pred             CeEEEeCCCccHHHHHHHHh-CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC--Ccc---
Q 028673           66 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--HIK---  139 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~--~~~---  139 (205)
                      ..|+.||||.=.-+..+... +.+++=+|.|++++.-++-+..++.         ....+......|..+..  .+.   
T Consensus        83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~---------~~~~~~~~v~~Dl~~~w~~~L~~~g  153 (260)
T TIGR00027        83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGA---------EPPAHRRAVPVDLRQDWPAALAAAG  153 (260)
T ss_pred             cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCC---------CCCCceEEeccCchhhHHHHHHhCC
Confidence            36999999965444444322 4567777888888877777765532         11244556665544110  011   


Q ss_pred             cCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          140 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ......-++++-.++++  .+....+++.+.....||+.+++-+...
T Consensus       154 fd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~  200 (260)
T TIGR00027       154 FDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP  200 (260)
T ss_pred             CCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence            11234456777777755  4567789999999888999988876544

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=92.53  E-value=1.4  Score=35.55  Aligned_cols=94  Identities=17%  Similarity=0.143  Sum_probs=52.4

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeec-CCCCCc
Q 028673           64 KGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw-~~~~~~  138 (205)
                      ++.+||=.|+|. |++.+.+|+. |++ |+++|. ++-++.+++    .+..             ..+...+. ......
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-------------~~i~~~~~~~~~~~~  182 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT-------------ALAEPEVLAERQGGL  182 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc-------------EecCchhhHHHHHHH
Confidence            678999999875 7776666654 776 889987 544444433    1110             00000000 000000


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      . ....+|+|+-+      .--...++...++++++|++++.-
T Consensus       183 ~-~~~g~d~vid~------~G~~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       183 Q-NGRGVDVALEF------SGATAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             h-CCCCCCEEEEC------CCChHHHHHHHHHhcCCCEEEEec
Confidence            0 12358887754      222456667778889999987655

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.45  E-value=0.48  Score=39.71  Aligned_cols=98  Identities=18%  Similarity=0.153  Sum_probs=52.4

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..+.+||=.|||. |...+.+|+. |++ |+++|. ++-.+.+++    .+..           .-+.....+|.+.-..
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~-----------~~i~~~~~~~~~~i~~  239 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT-----------HTVNSSGTDPVEAIRA  239 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc-----------eEEcCCCcCHHHHHHH
Confidence            4578999999874 7777766764 775 999988 554444432    2210           0011111111100000


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ......+|+|+-+  .-.    +..+......++++|++++.-
T Consensus       240 ~~~~~g~d~vid~--~g~----~~~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       240 LTGGFGADVVIDA--VGR----PETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             HhCCCCCCEEEEC--CCC----HHHHHHHHHHhccCCEEEEEC
Confidence            0112358888743  322    334555667889999987654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.38  E-value=1.3  Score=36.38  Aligned_cols=81  Identities=16%  Similarity=0.209  Sum_probs=58.7

Q ss_pred             CCCCCCCeEEEeCCCcc---HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           60 PSKLKGKRVIELGAGCG---VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtG---l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ..++.|+.||==|.|.|   .+++.+|++|++++..|+ ++..+...+.++.+|              ++.....|..+.
T Consensus        33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--------------~~~~y~cdis~~   98 (300)
T KOG1201|consen   33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--------------EAKAYTCDISDR   98 (300)
T ss_pred             hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--------------ceeEEEecCCCH
Confidence            45778999999999998   567778899999999999 666666666666553              466777777776


Q ss_pred             CCc-------ccCCCCccEEEEcccc
Q 028673          136 DHI-------KAVAPPFDYIIGTDVV  154 (205)
Q Consensus       136 ~~~-------~~~~~~fD~Ii~~d~~  154 (205)
                      ++.       ...-+..|+++-|--+
T Consensus        99 eei~~~a~~Vk~e~G~V~ILVNNAGI  124 (300)
T KOG1201|consen   99 EEIYRLAKKVKKEVGDVDILVNNAGI  124 (300)
T ss_pred             HHHHHHHHHHHHhcCCceEEEecccc
Confidence            543       1234678888876443

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=91.67  E-value=2.4  Score=35.88  Aligned_cols=109  Identities=16%  Similarity=0.096  Sum_probs=59.6

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC------EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGC------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  133 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~  133 (205)
                      +.-+|.+|||+.+-.|-=++.+....+      .|++-|. +.=+..+..-++.-.            ..++.+...+..
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------------~~~~~v~~~~~~  219 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------------SPNLLVTNHDAS  219 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------------Ccceeeecccce
Confidence            444688999999999966655554322      6999998 443444443332210            112222222211


Q ss_pred             CCCCc------ccCCCCccEEEEcccccCCc------------------------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          134 NEDHI------KAVAPPFDYIIGTDVVYAEH------------------------LLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       134 ~~~~~------~~~~~~fD~Ii~~d~~y~~~------------------------~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .....      ......||-|++ |+....+                        .--.++..-.++|++||+++.+..
T Consensus       220 ~~p~~~~~~~~~~~~~~fDrVLv-DVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC  297 (375)
T KOG2198|consen  220 LFPNIYLKDGNDKEQLKFDRVLV-DVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC  297 (375)
T ss_pred             eccccccccCchhhhhhcceeEE-ecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence            11111      112347898876 4332210                        011466677788999999988864

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.65  E-value=1.8  Score=35.95  Aligned_cols=89  Identities=17%  Similarity=0.031  Sum_probs=52.4

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ...|.+||=.|+|. |...+.+|+ .|++|++++. ++-.+.+++    .+..              .+...  .+.   
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~--------------~vi~~--~~~---  219 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA--------------SAGGA--YDT---  219 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc--------------eeccc--ccc---
Confidence            34578999999864 655565665 4888999987 554444433    2220              11110  011   


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        ....+|+++..+..      ...+....+.++++|++++.-
T Consensus       220 --~~~~~d~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       220 --PPEPLDAAILFAPA------GGLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             --CcccceEEEECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence              12357877654432      246777778899999987654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.44  E-value=0.83  Score=39.07  Aligned_cols=74  Identities=23%  Similarity=0.377  Sum_probs=48.2

Q ss_pred             CeEEEeCCCc-cHHHH-HHHHhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           66 KRVIELGAGC-GVAGF-GMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        66 ~~VLdlGcGt-Gl~sl-~~a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++||=||||. |.... .+|+.+ .+|+..|. .+.++.+..+..                .+++...+|..+.+.+...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----------------~~v~~~~vD~~d~~al~~l   65 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----------------GKVEALQVDAADVDALVAL   65 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----------------ccceeEEecccChHHHHHH
Confidence            5799999974 53333 335556 57999998 564444433211                2578888888887655444


Q ss_pred             CCCccEEEEccccc
Q 028673          142 APPFDYIIGTDVVY  155 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y  155 (205)
                      -..+|+||..-+.|
T Consensus        66 i~~~d~VIn~~p~~   79 (389)
T COG1748          66 IKDFDLVINAAPPF   79 (389)
T ss_pred             HhcCCEEEEeCCch
Confidence            55679998875444

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=91.29  E-value=0.53  Score=38.67  Aligned_cols=96  Identities=23%  Similarity=0.316  Sum_probs=53.1

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..+.+||..|+|. |...+.+|+ .|.+|++++. ++..+.+++    .+..           ..+......+...- ..
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~-----------~~~~~~~~~~~~~~-~~  227 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD-----------EVLNSLDDSPKDKK-AA  227 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC-----------EEEcCCCcCHHHHH-HH
Confidence            3567888888863 666666665 4888999987 555444432    2210           00000000000000 01


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .....+|+++.+  .    .....++.+.+.++++|+++..
T Consensus       228 ~~~~~~D~vid~--~----g~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         228 GLGGGFDVIFDF--V----GTQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             hcCCCceEEEEC--C----CCHHHHHHHHHHhhcCCEEEEE
Confidence            123468988754  1    1245677778899999998765

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=91.29  E-value=1.5  Score=35.92  Aligned_cols=32  Identities=34%  Similarity=0.545  Sum_probs=22.2

Q ss_pred             CCCCCeEEEeCCCccHH---HHHHHHhCCE-EEEEcC
Q 028673           62 KLKGKRVIELGAGCGVA---GFGMALLGCN-VITTDQ   94 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~-v~~~D~   94 (205)
                      ..+++++|=+|+| |..   ...++..|++ |+.++.
T Consensus       123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R  158 (289)
T PRK12548        123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNI  158 (289)
T ss_pred             CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeC
Confidence            3568899999997 532   2223456875 999987

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=91.23  E-value=0.42  Score=33.62  Aligned_cols=85  Identities=27%  Similarity=0.325  Sum_probs=53.8

Q ss_pred             CccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC---ccc--CCCCcc
Q 028673           74 GCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---IKA--VAPPFD  146 (205)
Q Consensus        74 GtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~---~~~--~~~~fD  146 (205)
                      |.|+.++.+|+. |++|+++|. ++-++.+++    .+.              -.  ..+..+.+.   ...  ....+|
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga--------------~~--~~~~~~~~~~~~i~~~~~~~~~d   60 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGA--------------DH--VIDYSDDDFVEQIRELTGGRGVD   60 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTE--------------SE--EEETTTSSHHHHHHHHTTTSSEE
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hcc--------------cc--cccccccccccccccccccccce
Confidence            568888888865 888999999 555555543    322              11  223333211   111  124799


Q ss_pred             EEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       147 ~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      +|+-+      ......++...++++++|++.+.--..
T Consensus        61 ~vid~------~g~~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   61 VVIDC------VGSGDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             EEEES------SSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             EEEEe------cCcHHHHHHHHHHhccCCEEEEEEccC
Confidence            88876      233678888889999999988875443

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=90.98  E-value=1.7  Score=34.15  Aligned_cols=94  Identities=30%  Similarity=0.300  Sum_probs=53.1

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-
Q 028673           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  138 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-  138 (205)
                      .++.+||-.|+|+ |...+.+++ .|.+|++++. ++..+.++.    .+.              -.+  .+....... 
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~--------------~~~--~~~~~~~~~~  192 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGA--------------DHV--IDYKEEDLEE  192 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCC--------------cee--ccCCcCCHHH
Confidence            4678999999986 555554554 4788999988 544444432    111              000  111111100 


Q ss_pred             ---ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          139 ---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       139 ---~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                         ......+|+++.+  .-    .......+.+.++++|+++....
T Consensus       193 ~~~~~~~~~~d~vi~~--~~----~~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         193 ELRLTGGGGADVVIDA--VG----GPETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             HHHHhcCCCCCEEEEC--CC----CHHHHHHHHHhcccCCEEEEEcc
Confidence               0123579999865  11    11456667778889999876643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=90.69  E-value=2  Score=35.48  Aligned_cols=39  Identities=36%  Similarity=0.460  Sum_probs=26.9

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEEcC-cchHHHH
Q 028673           63 LKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL  101 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~~-v~~~D~-~~~l~~~  101 (205)
                      .++.+||=+|+|. |...+.+++ .|++ |+++|. ++-.+.+
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~  204 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELA  204 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            4578888899864 666665665 4887 999987 5544444

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=90.66  E-value=0.82  Score=34.19  Aligned_cols=102  Identities=11%  Similarity=0.083  Sum_probs=57.3

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCE-EEEEcCcc--hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQIE--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~~~--~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      |++++=+|+..=.+=..+.+.|+. |+.+|+..  .-+..+..+..-              ..+++ .-+|..      -
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi--------------~p~df-~~~~~~------y   60 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSI--------------LPVDF-AKNWQK------Y   60 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccc--------------cHHHH-HHHHHH------h
Confidence            577888888866666666677775 88888732  111111100000              00000 001211      1


Q ss_pred             CCCccEEEEcccccCCc-----------ChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          142 APPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~-----------~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      ..+||.+.+-..+-+..           .....+..+.++||+||.++++.|.....
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~  117 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA  117 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc
Confidence            35688877766664421           22356777888999999999998865433

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=90.60  E-value=0.6  Score=39.66  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=27.0

Q ss_pred             CeEEEeCCCccHHHHHHHH-hCCEEEEEcCcc
Q 028673           66 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIE   96 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~-~g~~v~~~D~~~   96 (205)
                      +.|+|+|+|.|.++-+++- .|..|.++|.+.
T Consensus       155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq  186 (476)
T KOG2651|consen  155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ  186 (476)
T ss_pred             CeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence            5799999999999999985 577899999854

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=90.60  E-value=1.9  Score=36.28  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=23.9

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC
Q 028673           64 KGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ   94 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~   94 (205)
                      .+.+||=.|||. |+..+.+|+. |++|++++.
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~  215 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS  215 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            577888899975 7777777754 888888876

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.45  E-value=0.59  Score=37.01  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=28.3

Q ss_pred             CCCC-CeEEEeCCCccHHHHHHHHh--------CCE---EEEEcCcch
Q 028673           62 KLKG-KRVIELGAGCGVAGFGMALL--------GCN---VITTDQIEV   97 (205)
Q Consensus        62 ~~~~-~~VLdlGcGtGl~sl~~a~~--------g~~---v~~~D~~~~   97 (205)
                      .++| ++|+||.+-.|..|..++++        +.+   ++++|+..|
T Consensus        38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M   85 (294)
T KOG1099|consen   38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM   85 (294)
T ss_pred             HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC
Confidence            4455 58999999999999999975        222   999998554

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=90.43  E-value=0.51  Score=37.62  Aligned_cols=48  Identities=25%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             HHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHH
Q 028673           45 FVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLP   99 (205)
Q Consensus        45 La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~   99 (205)
                      |+.++....      |.. +..+++|.-||+|.+++.+...+.+|+.-|+ +..+.
T Consensus         8 l~~~I~~~i------p~~-~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~   56 (260)
T PF02086_consen    8 LAKWIIELI------PKN-KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLIN   56 (260)
T ss_dssp             GHHHHHHHS-------S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHH
T ss_pred             HHHHHHHHc------CCC-CCCEEEEEecchhHHHHHhcccccceeeeechHHHHH
Confidence            556666542      222 5789999999999999988888889999999 54433

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=90.32  E-value=0.6  Score=39.39  Aligned_cols=96  Identities=19%  Similarity=0.254  Sum_probs=51.8

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..+.+||=.|+|. |.+.+.+|+. |+ +|+++|. ++-++.+++    .+..           .-+.....++.+  ..
T Consensus       190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-----------~~i~~~~~~~~~--~i  252 (371)
T cd08281         190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT-----------ATVNAGDPNAVE--QV  252 (371)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc-----------eEeCCCchhHHH--HH
Confidence            3577888899874 6666666654 87 5999998 554454432    2210           000100101100  00


Q ss_pred             c-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      . .....+|+|+-+  .    .....+....++++++|++++.-
T Consensus       253 ~~~~~~g~d~vid~--~----G~~~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         253 RELTGGGVDYAFEM--A----GSVPALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             HHHhCCCCCEEEEC--C----CChHHHHHHHHHHhcCCEEEEEc
Confidence            0 112258888754  1    12345666677888999877653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=90.17  E-value=0.85  Score=34.64  Aligned_cols=103  Identities=21%  Similarity=0.256  Sum_probs=52.8

Q ss_pred             eEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC-----CCCCceEEEEeecCCCCCc
Q 028673           67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        67 ~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~i~~~~~dw~~~~~~  138 (205)
                      +|.=+|+|+ | -++..++..|.+|+..|. ++.++.+++.+..+.........-+     ....++.+..    +   +
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~----d---l   73 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTT----D---L   73 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEES----S---G
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccccc----C---H
Confidence            356688886 5 456666778999999999 7788877777765322110000000     0011233211    1   1


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                      .... ..|+|+-+ +.-..+.-..+++.+.+++.|+..+.
T Consensus        74 ~~~~-~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ila  111 (180)
T PF02737_consen   74 EEAV-DADLVIEA-IPEDLELKQELFAELDEICPPDTILA  111 (180)
T ss_dssp             GGGC-TESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred             HHHh-hhheehhh-ccccHHHHHHHHHHHHHHhCCCceEE
Confidence            1122 56777765 11222334477888888877776543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=90.08  E-value=4.3  Score=33.63  Aligned_cols=98  Identities=27%  Similarity=0.333  Sum_probs=59.1

Q ss_pred             eEEEeCCCc--cHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           67 RVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        67 ~VLdlGcGt--Gl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      +|+=+|||.  ++++..+++.|..|+.+-.++.++..+++    ++.+...      ..+.......    ........+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~----GL~i~~~------~~~~~~~~~~----~~~~~~~~~   67 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKK----GLRIEDE------GGNFTTPVVA----ATDAEALGP   67 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhC----CeEEecC------CCcccccccc----ccChhhcCC
Confidence            678899996  58888899999667777665434444443    4322110      0000111100    001122348


Q ss_pred             ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      +|+|+.+   -.....+..++.+...+++.+.+++..
T Consensus        68 ~Dlviv~---vKa~q~~~al~~l~~~~~~~t~vl~lq  101 (307)
T COG1893          68 ADLVIVT---VKAYQLEEALPSLAPLLGPNTVVLFLQ  101 (307)
T ss_pred             CCEEEEE---eccccHHHHHHHhhhcCCCCcEEEEEe
Confidence            9999887   445578899999999999888765543

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=89.51  E-value=8.8  Score=30.14  Aligned_cols=80  Identities=20%  Similarity=0.323  Sum_probs=49.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ..++++++|=.|++.|+ |..+    ++.|++|++++. ++.++.+...++..+             .++.+...|..+.
T Consensus         7 ~~~~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~   72 (256)
T PRK06124          7 FSLAGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG-------------GAAEALAFDIADE   72 (256)
T ss_pred             cCCCCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEccCCCH
Confidence            34578999999976554 4433    345899999998 555554444444332             2467777777765


Q ss_pred             CCcc-------cCCCCccEEEEcccc
Q 028673          136 DHIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       136 ~~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      +...       ..-+++|.++.+--.
T Consensus        73 ~~~~~~~~~~~~~~~~id~vi~~ag~   98 (256)
T PRK06124         73 EAVAAAFARIDAEHGRLDILVNNVGA   98 (256)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            4321       112468888876443

>TIGR00518 alaDH alanine dehydrogenase

Probab=89.49  E-value=1  Score=38.37  Aligned_cols=38  Identities=32%  Similarity=0.398  Sum_probs=26.2

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHH
Q 028673           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPL  100 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~  100 (205)
                      .++.+|+=+|+|. |...+..++ .|++|+.+|. ++.++.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~  205 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQ  205 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence            3567799999984 655555554 4889999998 554333

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=89.43  E-value=0.13  Score=35.82  Aligned_cols=39  Identities=18%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             CccEEEEcccccC------CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          144 PFDYIIGTDVVYA------EHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       144 ~fD~Ii~~d~~y~------~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +||+|+|-.+.=+      .+.+..+++.+..+|+|||.+++..+
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ   45 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ   45 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            4899999887744      33466899999999999999998854

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=89.30  E-value=0.43  Score=37.10  Aligned_cols=113  Identities=9%  Similarity=0.027  Sum_probs=60.3

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCE--EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cccc-
Q 028673           66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA-  140 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~-  140 (205)
                      ..+.|||||-|-+-+.++.+...  +.+.++ ..+.+..+..+..-...-     ...-..++.+....--..- .+.. 
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~-----a~~~~~ni~vlr~namk~lpn~f~k  136 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTS-----AEGQYPNISVLRTNAMKFLPNFFEK  136 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccc-----cccccccceeeeccchhhccchhhh
Confidence            46899999999777777877654  888888 667777777765543110     0011223333332111100 0000 


Q ss_pred             CCCCccEEEEcccccCCc------ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ..-+-+..+.-|+=+...      .-..++....-++++||.+|.....
T Consensus       137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV  185 (249)
T ss_pred             cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence            000112223223222211      1235777788889999999887653

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=88.86  E-value=0.54  Score=38.99  Aligned_cols=76  Identities=17%  Similarity=0.212  Sum_probs=47.5

Q ss_pred             EEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC---CCc-c
Q 028673           69 IELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE---DHI-K  139 (205)
Q Consensus        69 LdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~---~~~-~  139 (205)
                      +|+|.|+-  .|..+    +.+...++||+ +-.++.+..|+.+|+.           .+.+.+....-...   +.. .
T Consensus       107 iDIgtgas--ci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~l-----------ss~ikvV~~~~~ktll~d~~~~  173 (419)
T KOG2912|consen  107 IDIGTGAS--CIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNL-----------SSLIKVVKVEPQKTLLMDALKE  173 (419)
T ss_pred             eeccCchh--hhHHhhhchhccceeeeeeccccccchhhcccccccc-----------ccceeeEEecchhhcchhhhcc
Confidence            78877653  33333    23556999999 5578999999999954           44555544321110   111 1


Q ss_pred             cCCCCccEEEEcccccCC
Q 028673          140 AVAPPFDYIIGTDVVYAE  157 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~  157 (205)
                      ..+..||+..+++++|..
T Consensus       174 ~~e~~ydFcMcNPPFfe~  191 (419)
T KOG2912|consen  174 ESEIIYDFCMCNPPFFEN  191 (419)
T ss_pred             CccceeeEEecCCchhhc
Confidence            123469999999999874

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=88.80  E-value=7.3  Score=32.04  Aligned_cols=93  Identities=23%  Similarity=0.282  Sum_probs=50.8

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+||-.|||. |...+.+++ .|. +|++++. ++..+.+++ ...+                 .+....-.......
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~g~~-----------------~vi~~~~~~~~~~~  226 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-MGAD-----------------ETVNLARDPLAAYA  226 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCCC-----------------EEEcCCchhhhhhh
Confidence            688898898874 556555554 477 6999987 554443332 1100                 01100000000111


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .....+|+++.+-      .....++.+.+.|+++|+++..
T Consensus       227 ~~~~~vd~vld~~------g~~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         227 ADKGDFDVVFEAS------GAPAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             ccCCCccEEEECC------CCHHHHHHHHHHHhcCCEEEEE
Confidence            1123589888651      1134566777888999988764

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK11524 putative methyltransferase; Provisional

Probab=88.70  E-value=0.47  Score=38.75  Aligned_cols=42  Identities=14%  Similarity=0.120  Sum_probs=31.5

Q ss_pred             CCCccEEEEcccccCC----------------cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          142 APPFDYIIGTDVVYAE----------------HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~----------------~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      +++||+|+++++++..                ..+..++..+.++|+|+|.+++....
T Consensus        25 ~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~   82 (284)
T PRK11524         25 SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST   82 (284)
T ss_pred             cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            5689999998776421                11246888999999999999987554

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=88.50  E-value=1.4  Score=36.86  Aligned_cols=94  Identities=22%  Similarity=0.202  Sum_probs=52.6

Q ss_pred             CCCCCeEEEeCC-C-ccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe----ecC
Q 028673           62 KLKGKRVIELGA-G-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL----DWG  133 (205)
Q Consensus        62 ~~~~~~VLdlGc-G-tGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~----dw~  133 (205)
                      ..+|.+||=.|+ | .|...+.+|+. |++|++++. ++-.+.+++.   .+.             . .+...    ++.
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa-------------~-~vi~~~~~~~~~  218 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGF-------------D-EAFNYKEEPDLD  218 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCC-------------C-EEEECCCcccHH
Confidence            346789999998 4 47777777764 889999887 4444443321   221             0 11111    111


Q ss_pred             CCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          134 NEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       134 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      +.- .......+|+|+-+  +-     ...+....++++++|++++.
T Consensus       219 ~~i-~~~~~~gvD~v~d~--vG-----~~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        219 AAL-KRYFPEGIDIYFDN--VG-----GDMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             HHH-HHHCCCCcEEEEEC--CC-----HHHHHHHHHHhccCCEEEEE
Confidence            000 00112358888743  22     24567777888999998765

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=88.16  E-value=2  Score=36.28  Aligned_cols=59  Identities=10%  Similarity=0.126  Sum_probs=34.8

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh----------CCEEEEEcCcchHHHHHHH
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL----------GCNVITTDQIEVLPLLKRN  104 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~----------g~~v~~~D~~~~l~~~~~n  104 (205)
                      +..++.|+.+.-.+.    .......++|+|+|+|.+..-+.+.          ..++..++.+.-+...+++
T Consensus        59 Gella~~~~~~wq~~----g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~  127 (370)
T COG1565          59 GELLAEQFLQLWQEL----GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKE  127 (370)
T ss_pred             HHHHHHHHHHHHHHh----cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHH
Confidence            345677765532111    1112347999999999877655432          3579999994434444443

>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=88.11  E-value=0.6  Score=37.65  Aligned_cols=37  Identities=30%  Similarity=0.336  Sum_probs=33.2

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcc
Q 028673           60 PSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE   96 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~   96 (205)
                      ..+.+|+.+.||-+|||++|-.+.+.|..|++-|++.
T Consensus        23 k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~   59 (330)
T COG3392          23 KEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY   59 (330)
T ss_pred             hcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence            4566888999999999999999999999999999854

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=88.01  E-value=1.3  Score=31.17  Aligned_cols=77  Identities=23%  Similarity=0.282  Sum_probs=47.3

Q ss_pred             CeEEEeCCCc-cHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           66 KRVIELGAGC-GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        66 ~~VLdlGcGt-Gl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      .+|.|+|-|- =-.+-.++++|..|++||+.+.      ++. .               -+.+..-|..++        .
T Consensus        15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~------~a~-~---------------g~~~v~DDitnP--------~   64 (129)
T COG1255          15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK------TAP-E---------------GLRFVVDDITNP--------N   64 (129)
T ss_pred             CcEEEEccchHHHHHHHHHHcCCcEEEEecccc------cCc-c---------------cceEEEccCCCc--------c
Confidence            4899999986 3567788889999999999442      212 1               234444333322        2


Q ss_pred             ccEEEEcccccCCcChHhHHHHHHHhhC
Q 028673          145 FDYIIGTDVVYAEHLLEPLLQTIFALSG  172 (205)
Q Consensus       145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~  172 (205)
                      .-+--+++.+|.....+++.+.+.++.+
T Consensus        65 ~~iY~~A~lIYSiRpppEl~~~ildva~   92 (129)
T COG1255          65 ISIYEGADLIYSIRPPPELQSAILDVAK   92 (129)
T ss_pred             HHHhhCccceeecCCCHHHHHHHHHHHH
Confidence            2223345666776666667666666543

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.98  E-value=6.8  Score=31.89  Aligned_cols=41  Identities=34%  Similarity=0.405  Sum_probs=29.4

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHH
Q 028673           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVE  106 (205)
Q Consensus        66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~  106 (205)
                      ++|.=+|+|+ | .++..+++.|.+|++.|. ++.++.++.+++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~   47 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA   47 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence            3677789885 3 445555667889999999 677777776654

>PRK07326 short chain dehydrogenase; Provisional

Probab=87.94  E-value=5.7  Score=30.72  Aligned_cols=76  Identities=22%  Similarity=0.287  Sum_probs=43.5

Q ss_pred             CCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .+++||=.|+ +|.+|..++    ..|++|++++. ++..+.+...+...              ..+.+...|..+....
T Consensus         5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~D~~~~~~~   69 (237)
T PRK07326          5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--------------GNVLGLAADVRDEADV   69 (237)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--------------CcEEEEEccCCCHHHH
Confidence            4688999996 454555554    44889999987 54333333332211              2456667676654322


Q ss_pred             cc-------CCCCccEEEEcccc
Q 028673          139 KA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       139 ~~-------~~~~fD~Ii~~d~~  154 (205)
                      ..       ..+++|.|+.+.-.
T Consensus        70 ~~~~~~~~~~~~~~d~vi~~ag~   92 (237)
T PRK07326         70 QRAVDAIVAAFGGLDVLIANAGV   92 (237)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            11       12468988866433

>PRK06139 short chain dehydrogenase; Provisional

Probab=87.93  E-value=1.9  Score=36.00  Aligned_cols=78  Identities=21%  Similarity=0.258  Sum_probs=49.2

Q ss_pred             CCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .++++||=.|++.|+-   +..+++.|++|++++. ++.++.+...++..+             .++.+...|..+.+..
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~d~~~v   71 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG-------------AEVLVVPTDVTDADQV   71 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHHH
Confidence            4678999999866542   3334456899999988 555655555554432             2466677777765432


Q ss_pred             cc-------CCCCccEEEEccc
Q 028673          139 KA-------VAPPFDYIIGTDV  153 (205)
Q Consensus       139 ~~-------~~~~fD~Ii~~d~  153 (205)
                      ..       ..+++|++|.+--
T Consensus        72 ~~~~~~~~~~~g~iD~lVnnAG   93 (330)
T PRK06139         72 KALATQAASFGGRIDVWVNNVG   93 (330)
T ss_pred             HHHHHHHHHhcCCCCEEEECCC
Confidence            11       1257899887643

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=87.85  E-value=7.4  Score=31.62  Aligned_cols=95  Identities=27%  Similarity=0.353  Sum_probs=52.5

Q ss_pred             eEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        67 ~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      +|+=+|||. | .++..+++.|.+|++++. ++.++.+++    ++....        ...... ..  ........ ..
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~--------~~~~~~-~~--~~~~~~~~-~~   65 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLE--------DGEITV-PV--LAADDPAE-LG   65 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCccc--------CCceee-cc--cCCCChhH-cC
Confidence            577788885 3 456666677889999998 554443332    222110        001110 00  00111111 25


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ++|+|+.+=.   ....+.+++.+...+.++..++..
T Consensus        66 ~~d~vila~k---~~~~~~~~~~l~~~l~~~~~iv~~   99 (304)
T PRK06522         66 PQDLVILAVK---AYQLPAALPSLAPLLGPDTPVLFL   99 (304)
T ss_pred             CCCEEEEecc---cccHHHHHHHHhhhcCCCCEEEEe
Confidence            7999988733   235678888888888777665543

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=87.70  E-value=3.3  Score=35.18  Aligned_cols=31  Identities=26%  Similarity=0.320  Sum_probs=24.0

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC
Q 028673           64 KGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ   94 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~   94 (205)
                      .+.+||=.|||. |+..+.+|+. |++|+++|.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~  210 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISR  210 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeC
Confidence            578888899874 7777766754 888888886

>PLN02740 Alcohol dehydrogenase-like

Probab=87.68  E-value=1.7  Score=36.82  Aligned_cols=41  Identities=29%  Similarity=0.256  Sum_probs=29.3

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHH
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLK  102 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~  102 (205)
                      ...|.+||=+|||. |+..+.+|+. |+ +|+++|. ++-++.++
T Consensus       196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~  240 (381)
T PLN02740        196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGK  240 (381)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH
Confidence            34678999999875 7776666654 77 5999998 55555554

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=87.19  E-value=6.6  Score=29.42  Aligned_cols=45  Identities=22%  Similarity=0.150  Sum_probs=34.3

Q ss_pred             CCCccEEEEcccccC-------------CcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          142 APPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~-------------~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ..+||.|+-+-+--.             ...+..+++.+..+|+++|.+.|+.....+
T Consensus        73 ~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p  130 (166)
T PF10354_consen   73 NQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP  130 (166)
T ss_pred             CCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence            568999998854433             123556788888899999999999887665

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=87.16  E-value=1.8  Score=35.91  Aligned_cols=39  Identities=41%  Similarity=0.583  Sum_probs=27.2

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEEcC-cchHHHH
Q 028673           63 LKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL  101 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~~-v~~~D~-~~~l~~~  101 (205)
                      ..+.+||=+|||+ |...+.+|+ .|++ |+++|. ++-.+.+
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~  201 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALA  201 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence            3578899899875 766666665 4776 788887 5544443

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=87.00  E-value=2.5  Score=35.14  Aligned_cols=93  Identities=22%  Similarity=0.227  Sum_probs=51.5

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-  136 (205)
                      ..++.+||=.|+|. |...+.+|+. |.. |+++|. ++-.+.+++    .+.              -.+..  ..... 
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~--------------~~~v~--~~~~~~  223 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGA--------------TDIVD--YKNGDV  223 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCC--------------ceEec--CCCCCH
Confidence            33578888888874 6666666654 774 899988 544444442    111              01111  11110 


Q ss_pred             --Cc--ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          137 --HI--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       137 --~~--~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                        ..  ......+|+|+-+      ......+..+.++++++|+++..
T Consensus       224 ~~~i~~~~~~~~~d~vld~------~g~~~~~~~~~~~l~~~G~~v~~  265 (351)
T cd08285         224 VEQILKLTGGKGVDAVIIA------GGGQDTFEQALKVLKPGGTISNV  265 (351)
T ss_pred             HHHHHHHhCCCCCcEEEEC------CCCHHHHHHHHHHhhcCCEEEEe
Confidence              00  0112468888753      12235677778888899987754

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.98  E-value=2.8  Score=34.25  Aligned_cols=103  Identities=18%  Similarity=0.174  Sum_probs=56.4

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC-----CCCCceEEEEeecCCCCC
Q 028673           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~i~~~~~dw~~~~~  137 (205)
                      ++|-=+|+|+ | -++..++..|.+|+..|. ++.++.+...+..+.....+....+     ....++.+. .+   .+ 
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~-~~---~~-   80 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFT-TD---LG-   80 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEee-CC---HH-
Confidence            3688889986 3 445666777999999999 7787777766654432111110000     001122221 11   11 


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhh-CCCcEE
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTI  177 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l-~~~g~~  177 (205)
                         .-...|+|+-+ +.-..+.-..++..+.+++ +|+..+
T Consensus        81 ---~~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il  117 (286)
T PRK07819         81 ---DFADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVL  117 (286)
T ss_pred             ---HhCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEE
Confidence               12356888775 2233344447778888877 555443

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=86.86  E-value=4.7  Score=33.79  Aligned_cols=33  Identities=30%  Similarity=0.312  Sum_probs=23.4

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC-cc
Q 028673           64 KGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ-IE   96 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~-~~   96 (205)
                      .+.+||=.|+|. |...+.+|+. |++|++++. ++
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~  215 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDK  215 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            577888888864 7766666654 778777766 44

>PRK08265 short chain dehydrogenase; Provisional

Probab=86.68  E-value=7.4  Score=30.88  Aligned_cols=76  Identities=16%  Similarity=0.184  Sum_probs=44.5

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .+++++|=.|++.|+   ++..+++.|++|+++|. ++-++.+.+.+  +              .++.+...|..+.+..
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~--------------~~~~~~~~Dl~~~~~~   67 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL--G--------------ERARFIATDITDDAAI   67 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--C--------------CeeEEEEecCCCHHHH
Confidence            467899999976553   23333456899999998 44232222211  1              2466777777766432


Q ss_pred             c-------cCCCCccEEEEcccc
Q 028673          139 K-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d~~  154 (205)
                      .       ..-++.|+++.+--+
T Consensus        68 ~~~~~~~~~~~g~id~lv~~ag~   90 (261)
T PRK08265         68 ERAVATVVARFGRVDILVNLACT   90 (261)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence            1       112468988876543

>PRK05867 short chain dehydrogenase; Provisional

Probab=86.65  E-value=3.3  Score=32.64  Aligned_cols=80  Identities=20%  Similarity=0.317  Sum_probs=47.6

Q ss_pred             CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=.|++.|+-   +..+++.|++|++++. ++.++.+...+...+             .++.....|..+.+.
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~D~~~~~~   72 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-------------GKVVPVCCDVSQHQQ   72 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CeEEEEEccCCCHHH
Confidence            35688999999876642   3333456899999988 554444444333221             245666767665542


Q ss_pred             cc-------cCCCCccEEEEcccc
Q 028673          138 IK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ..       ..-++.|.++.+.-+
T Consensus        73 ~~~~~~~~~~~~g~id~lv~~ag~   96 (253)
T PRK05867         73 VTSMLDQVTAELGGIDIAVCNAGI   96 (253)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            21       112478988876544

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=86.34  E-value=1.9  Score=34.79  Aligned_cols=31  Identities=23%  Similarity=0.228  Sum_probs=25.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-------CEEEEEcC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ   94 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g-------~~v~~~D~   94 (205)
                      ++..++|+|||.|.+|-.+++.-       ..++++|.
T Consensus        18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR   55 (259)
T PF05206_consen   18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR   55 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence            45589999999999999998652       35999998

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK07109 short chain dehydrogenase; Provisional

Probab=86.26  E-value=12  Score=31.25  Aligned_cols=80  Identities=24%  Similarity=0.285  Sum_probs=48.5

Q ss_pred             CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~s---l~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++++||=.|++.|+-.   ..+++.|++|++++. ++.++.+...++..+             .++.+...|..+.+.
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g-------------~~~~~v~~Dv~d~~~   71 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG-------------GEALAVVADVADAEA   71 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------CcEEEEEecCCCHHH
Confidence            346788999998665422   233456899999988 555555554444321             246677777766543


Q ss_pred             ccc-------CCCCccEEEEcccc
Q 028673          138 IKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ...       .-+++|+++.+--+
T Consensus        72 v~~~~~~~~~~~g~iD~lInnAg~   95 (334)
T PRK07109         72 VQAAADRAEEELGPIDTWVNNAMV   95 (334)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCc
Confidence            211       12478988876543

>PRK06701 short chain dehydrogenase; Provisional

Probab=86.18  E-value=8.2  Score=31.33  Aligned_cols=79  Identities=20%  Similarity=0.160  Sum_probs=44.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cc-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .++++++|=.|++.|+   ++..+++.|++|++++. ++ ..+.....++..             ..++.+...|..+.+
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~  109 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE-------------GVKCLLIPGDVSDEA  109 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc-------------CCeEEEEEccCCCHH
Confidence            5568899999986654   23333456899998887 32 233332222221             124667777776654


Q ss_pred             Cccc-------CCCCccEEEEccc
Q 028673          137 HIKA-------VAPPFDYIIGTDV  153 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~  153 (205)
                      ....       ...++|++|.+--
T Consensus       110 ~~~~~~~~i~~~~~~iD~lI~~Ag  133 (290)
T PRK06701        110 FCKDAVEETVRELGRLDILVNNAA  133 (290)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCc
Confidence            3211       1246898876543

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=86.17  E-value=4.8  Score=33.21  Aligned_cols=99  Identities=18%  Similarity=0.217  Sum_probs=54.6

Q ss_pred             CCeEEEeCCCc--cHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           65 GKRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        65 ~~~VLdlGcGt--Gl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ..+|+=+|+|.  |+++..+++.|.+|+++.... .+.    +..++......      .....+.........   ...
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~----~~~~g~~~~~~------~~~~~~~~~~~~~~~---~~~   70 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEA----VRENGLQVDSV------HGDFHLPPVQAYRSA---EDM   70 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHH----HHhCCeEEEeC------CCCeeecCceEEcch---hhc
Confidence            35799999995  467777788899998887743 222    23343211000      001111111111111   123


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .++|+|+.+=-.|   ....+++.+..++++++.++..
T Consensus        71 ~~~D~vilavK~~---~~~~~~~~l~~~~~~~~~iv~l  105 (313)
T PRK06249         71 PPCDWVLVGLKTT---ANALLAPLIPQVAAPDAKVLLL  105 (313)
T ss_pred             CCCCEEEEEecCC---ChHhHHHHHhhhcCCCCEEEEe
Confidence            5799998873333   3456778888888888865543

>PRK08324 short chain dehydrogenase; Validated

Probab=85.92  E-value=6.5  Score=36.24  Aligned_cols=78  Identities=21%  Similarity=0.202  Sum_probs=45.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+++||=.|++.| +|..+    ++.|++|+++|. ++.++.+...+...              .++.+...|..+.+
T Consensus       419 ~l~gk~vLVTGasgg-IG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--------------~~v~~v~~Dvtd~~  483 (681)
T PRK08324        419 PLAGKVALVTGAAGG-IGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--------------DRALGVACDVTDEA  483 (681)
T ss_pred             CCCCCEEEEecCCCH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--------------CcEEEEEecCCCHH
Confidence            346789999997544 33333    345889999998 54433333222111              24667777766654


Q ss_pred             Ccc-------cCCCCccEEEEcccc
Q 028673          137 HIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ...       ...+++|+|+.+--+
T Consensus       484 ~v~~~~~~~~~~~g~iDvvI~~AG~  508 (681)
T PRK08324        484 AVQAAFEEAALAFGGVDIVVSNAGI  508 (681)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            321       112468998876543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=85.85  E-value=4.7  Score=31.84  Aligned_cols=79  Identities=19%  Similarity=0.172  Sum_probs=47.9

Q ss_pred             CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .++++++|=.|+ +|.+|..++    +.|++|+.++. ++-++.+...+...             ..++.+...|..+.+
T Consensus         9 ~~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-------------~~~~~~~~~Dl~d~~   74 (259)
T PRK08213          9 DLSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL-------------GIDALWIAADVADEA   74 (259)
T ss_pred             CcCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEEccCCCHH
Confidence            457889999995 444555555    34889999988 44444444333322             124667787777654


Q ss_pred             Ccc-------cCCCCccEEEEcccc
Q 028673          137 HIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ...       ...+++|.|+.+.-.
T Consensus        75 ~i~~~~~~~~~~~~~id~vi~~ag~   99 (259)
T PRK08213         75 DIERLAEETLERFGHVDILVNNAGA   99 (259)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCC
Confidence            331       112468988876543

>PRK07063 short chain dehydrogenase; Provisional

Probab=85.85  E-value=3.4  Score=32.66  Aligned_cols=81  Identities=20%  Similarity=0.238  Sum_probs=48.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=.|++.|+   ++..+++.|++|++++. ++.++.+...+....           ...++.+...|..+.+.
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Dl~~~~~   72 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV-----------AGARVLAVPADVTDAAS   72 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc-----------CCceEEEEEccCCCHHH
Confidence            3568899999987653   23334456899999998 554544444443210           12356677777766543


Q ss_pred             ccc-------CCCCccEEEEccc
Q 028673          138 IKA-------VAPPFDYIIGTDV  153 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~  153 (205)
                      ...       ..+++|.++.+--
T Consensus        73 ~~~~~~~~~~~~g~id~li~~ag   95 (260)
T PRK07063         73 VAAAVAAAEEAFGPLDVLVNNAG   95 (260)
T ss_pred             HHHHHHHHHHHhCCCcEEEECCC
Confidence            211       1247898887643

>PRK05854 short chain dehydrogenase; Provisional

Probab=85.74  E-value=5.5  Score=32.78  Aligned_cols=83  Identities=20%  Similarity=0.209  Sum_probs=49.1

Q ss_pred             CCCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+.+++++|=.|++.|+-   +..+++.|++|++++. ++-.+.+...+....           ...++.+..+|..+.+
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~-----------~~~~v~~~~~Dl~d~~   78 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV-----------PDAKLSLRALDLSSLA   78 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-----------CCCceEEEEecCCCHH
Confidence            355788999999877642   2233456899998887 443443433333221           1235677788877654


Q ss_pred             Ccc-------cCCCCccEEEEcccc
Q 028673          137 HIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ...       ...++.|++|.+--+
T Consensus        79 sv~~~~~~~~~~~~~iD~li~nAG~  103 (313)
T PRK05854         79 SVAALGEQLRAEGRPIHLLINNAGV  103 (313)
T ss_pred             HHHHHHHHHHHhCCCccEEEECCcc
Confidence            321       123578988866433

>PRK06949 short chain dehydrogenase; Provisional

Probab=85.58  E-value=3.6  Score=32.34  Aligned_cols=79  Identities=29%  Similarity=0.409  Sum_probs=46.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++++||=.|++.| +|..++    +.|++|++++. ++.++.+...+...             ..++.+...|..+.+
T Consensus         6 ~~~~k~ilItGasg~-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~   71 (258)
T PRK06949          6 NLEGKVALVTGASSG-LGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-------------GGAAHVVSLDVTDYQ   71 (258)
T ss_pred             CCCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHH
Confidence            456889999995443 444444    45889999988 55444444433322             124667777776543


Q ss_pred             Ccc-------cCCCCccEEEEcccc
Q 028673          137 HIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ...       ...+++|+|+.+.-.
T Consensus        72 ~~~~~~~~~~~~~~~~d~li~~ag~   96 (258)
T PRK06949         72 SIKAAVAHAETEAGTIDILVNNSGV   96 (258)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCC
Confidence            221       112468988876543

>PRK08339 short chain dehydrogenase; Provisional

Probab=85.20  E-value=3.6  Score=32.82  Aligned_cols=79  Identities=15%  Similarity=0.163  Sum_probs=47.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      +++++++|=.|++.|+   ++..+++.|++|+++|. ++-++.+...+....            ..++.+...|..+.+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~~~   72 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES------------NVDVSYIVADLTKRED   72 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHH
Confidence            3578899999987764   23344456999999998 554444444433210            1246677777776543


Q ss_pred             ccc------CCCCccEEEEcc
Q 028673          138 IKA------VAPPFDYIIGTD  152 (205)
Q Consensus       138 ~~~------~~~~fD~Ii~~d  152 (205)
                      ...      .-+++|+++.+-
T Consensus        73 i~~~~~~~~~~g~iD~lv~na   93 (263)
T PRK08339         73 LERTVKELKNIGEPDIFFFST   93 (263)
T ss_pred             HHHHHHHHHhhCCCcEEEECC
Confidence            211      124688887664

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=85.14  E-value=4.4  Score=29.27  Aligned_cols=99  Identities=23%  Similarity=0.254  Sum_probs=52.0

Q ss_pred             EEEeCCCc-c-HHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCc
Q 028673           68 VIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF  145 (205)
Q Consensus        68 VLdlGcGt-G-l~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~f  145 (205)
                      |+=+|+|. | +++-.+++.|.+|++++.+.-++.    ++.++..+....    ....+.... .....   .....+|
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~----~~~~g~~~~~~~----~~~~~~~~~-~~~~~---~~~~~~~   68 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEA----IKEQGLTITGPD----GDETVQPPI-VISAP---SADAGPY   68 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHH----HHHHCEEEEETT----EEEEEEEEE-EESSH---GHHHSTE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHh----hhheeEEEEecc----cceeccccc-ccCcc---hhccCCC
Confidence            34567774 3 444555566889999998443332    333433211100    000111111 11111   1135689


Q ss_pred             cEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          146 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       146 D~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      |+|+.+   -.....+..++.++..+++++.+++..
T Consensus        69 D~viv~---vKa~~~~~~l~~l~~~~~~~t~iv~~q  101 (151)
T PF02558_consen   69 DLVIVA---VKAYQLEQALQSLKPYLDPNTTIVSLQ  101 (151)
T ss_dssp             SEEEE----SSGGGHHHHHHHHCTGEETTEEEEEES
T ss_pred             cEEEEE---ecccchHHHHHHHhhccCCCcEEEEEe
Confidence            999987   233466788888999999986665543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=85.10  E-value=3.2  Score=32.38  Aligned_cols=80  Identities=23%  Similarity=0.259  Sum_probs=47.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+++||=.|++ |.+|..++    +.|++|++++. ++.+......+...+             .++.+...|+.+.+.
T Consensus         4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dl~~~~~   69 (251)
T PRK12826          4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-------------GKARARQVDVRDRAA   69 (251)
T ss_pred             CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEECCCCCHHH
Confidence            357889988865 44455544    45889999987 444443433333321             246777878776543


Q ss_pred             ccc-------CCCCccEEEEcccccC
Q 028673          138 IKA-------VAPPFDYIIGTDVVYA  156 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~y~  156 (205)
                      ...       .-+++|.|+.+...+.
T Consensus        70 ~~~~~~~~~~~~~~~d~vi~~ag~~~   95 (251)
T PRK12826         70 LKAAVAAGVEDFGRLDILVANAGIFP   95 (251)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence            211       1236898887754443

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=84.70  E-value=3.1  Score=34.37  Aligned_cols=108  Identities=22%  Similarity=0.283  Sum_probs=70.3

Q ss_pred             CeEEEeCCCccHHHHHHHHh-CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-cc---
Q 028673           66 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KA---  140 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-~~---  140 (205)
                      ..|+-||||-=.=+..+-.. +.+|.=+|+|++++.=++.++..+..         .....+.+..|..+.+-. ..   
T Consensus        94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~---------~~~~~~~Va~Dl~~~dw~~~L~~~  164 (297)
T COG3315          94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGAT---------PPAHRRLVAVDLREDDWPQALAAA  164 (297)
T ss_pred             cEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCC---------CCceEEEEeccccccchHHHHHhc
Confidence            67999999943211111111 45688899999988877777766431         122466666666532211 11   


Q ss_pred             --CCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 --VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 --~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                        .....=++++-.++.+  ++....+++.|..+..||..++..+.
T Consensus       165 G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         165 GFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             CCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence              1234557777777755  55677999999999999999988885

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=84.64  E-value=5.3  Score=31.44  Aligned_cols=79  Identities=22%  Similarity=0.349  Sum_probs=47.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+++++||=.|+. |-+|..++    ..|++|++++. ++.++.+...++..+             .++.....|..+.+
T Consensus         7 ~~~~k~vlItGa~-g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-------------~~~~~~~~D~~~~~   72 (255)
T PRK07523          7 DLTGRRALVTGSS-QGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG-------------LSAHALAFDVTDHD   72 (255)
T ss_pred             CCCCCEEEEECCc-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-------------ceEEEEEccCCCHH
Confidence            4578999999964 44455544    45889999988 444444444443321             24566676776654


Q ss_pred             Ccc-------cCCCCccEEEEcccc
Q 028673          137 HIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ...       ....+.|.++.+.-.
T Consensus        73 ~~~~~~~~~~~~~~~~d~li~~ag~   97 (255)
T PRK07523         73 AVRAAIDAFEAEIGPIDILVNNAGM   97 (255)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCC
Confidence            321       112468888877544

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=84.62  E-value=3  Score=34.42  Aligned_cols=96  Identities=25%  Similarity=0.254  Sum_probs=48.9

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+||-.|+|. |...+.+|+. |. .|++++. ++..+.+++    .+..           ..+.....++.+.-...
T Consensus       167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~-----------~vi~~~~~~~~~~i~~~  231 (347)
T cd05278         167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGAT-----------DIINPKNGDIVEQILEL  231 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCc-----------EEEcCCcchHHHHHHHH
Confidence            567888888763 6666666654 75 6888876 444443332    2110           00111111111100000


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .....+|+++-+  +-    ....+....+.++++|+++..
T Consensus       232 ~~~~~~d~vld~--~g----~~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         232 TGGRGVDCVIEA--VG----FEETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             cCCCCCcEEEEc--cC----CHHHHHHHHHHhhcCCEEEEE
Confidence            112468988753  21    124666667788888887654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.45  E-value=4.7  Score=33.67  Aligned_cols=102  Identities=20%  Similarity=0.167  Sum_probs=55.3

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCC-CCCCCceEEEEeecCCCCCcccC
Q 028673           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG-SDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~-~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++|-=+|+|+ | -++..++..|.+|++.|. ++.++.++..++............ .....++.+..       .+...
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-------~l~~a   80 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-------TIEAC   80 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-------CHHHH
Confidence            4688889986 4 345556678999999999 777766665554332111100000 00001122111       11111


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCc
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT  175 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g  175 (205)
                      -..-|+|+-+ +....+.-..+++.+.+.++|+.
T Consensus        81 v~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a  113 (321)
T PRK07066         81 VADADFIQES-APEREALKLELHERISRAAKPDA  113 (321)
T ss_pred             hcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe
Confidence            2356777765 33334445577888888888776

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=84.42  E-value=4.8  Score=32.54  Aligned_cols=108  Identities=20%  Similarity=0.274  Sum_probs=51.9

Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCc--c-HHHHH-HHHh---CCEEEEEcCcchHHHHHHHHHHhhhhhccCC
Q 028673           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC--G-VAGFG-MALL---GCNVITTDQIEVLPLLKRNVEWNTSRISQMN  116 (205)
Q Consensus        44 ~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGt--G-l~sl~-~a~~---g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~  116 (205)
                      .|..|+....      .....+.+||-||+|+  | .+|-. +.+.   ++-++-.|+.+.+.                 
T Consensus        47 QLCqYln~~t------laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS-----------------  103 (299)
T PF06460_consen   47 QLCQYLNKTT------LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS-----------------  103 (299)
T ss_dssp             HHHHHHTTS-----------TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B------------------
T ss_pred             HHHHHhcccc------EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc-----------------
Confidence            4666664321      2233578999999996  5 34443 3443   55566666644211                 


Q ss_pred             CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC-------------CcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~-------------~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                            +.-.....|....    ..+.+||+|++-  +|.             ...+.-+...++..|+-||.+.+-..-
T Consensus       104 ------Da~~~~~~Dc~t~----~~~~k~DlIiSD--mYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE  171 (299)
T PF06460_consen  104 ------DADQSIVGDCRTY----MPPDKFDLIISD--MYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITE  171 (299)
T ss_dssp             ------SSSEEEES-GGGE----EESS-EEEEEE------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-S
T ss_pred             ------ccCCceecccccc----CCCCcccEEEEe--cccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeec
Confidence                  1112333332222    235699999984  452             233556777778889999998887654


Q ss_pred             ccc
Q 028673          184 SMF  186 (205)
Q Consensus       184 r~~  186 (205)
                      ...
T Consensus       172 ~Sw  174 (299)
T PF06460_consen  172 HSW  174 (299)
T ss_dssp             SS-
T ss_pred             ccc
Confidence            444

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PRK05876 short chain dehydrogenase; Provisional

Probab=84.39  E-value=4.8  Score=32.40  Aligned_cols=79  Identities=15%  Similarity=0.220  Sum_probs=46.3

Q ss_pred             CCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++++++|=.|++.|+-   +..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+..
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~v   70 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG-------------FDVHGVMCDVRHREEV   70 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEeCCCCCHHHH
Confidence            5788999999877642   2233456899999998 444443333332221             2456667777665432


Q ss_pred             c-------cCCCCccEEEEcccc
Q 028673          139 K-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d~~  154 (205)
                      .       ...++.|+++.+--+
T Consensus        71 ~~~~~~~~~~~g~id~li~nAg~   93 (275)
T PRK05876         71 THLADEAFRLLGHVDVVFSNAGI   93 (275)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCc
Confidence            1       112468988776543

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=84.19  E-value=3.7  Score=38.15  Aligned_cols=103  Identities=17%  Similarity=0.161  Sum_probs=59.9

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCC-----CCCCCceEEEEeecCCCCC
Q 028673           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG-----SDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~-----~~~~~~i~~~~~dw~~~~~  137 (205)
                      ++|-=+|+|+ | -++..++..|.+|+..|. ++.++.+...+..+.........-     .....+++... +.   . 
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~---~-  388 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SY---A-  388 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH---H-
Confidence            4688999997 3 456667788999999999 778877776665442211000000     00011222211 11   1 


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEE
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI  177 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~  177 (205)
                         .-...|+||=+ +.-..+.-..+++.+.+.++|+..+
T Consensus       389 ---~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~il  424 (714)
T TIGR02437       389 ---GFDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAIL  424 (714)
T ss_pred             ---HhcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEE
Confidence               12357888765 3344455568888888888887553

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK08862 short chain dehydrogenase; Provisional

Probab=84.18  E-value=4.8  Score=31.46  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=46.4

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++++++|=.|++.|+   ++..+++.|++|++++. ++.++.+.+.+...+             ..+.....|..+.+..
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~-------------~~~~~~~~D~~~~~~~   69 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT-------------DNVYSFQLKDFSQESI   69 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEEccCCCHHHH
Confidence            467899999999885   34445567999999987 555554444443322             2344445555544322


Q ss_pred             c-------cCCC-CccEEEEcc
Q 028673          139 K-------AVAP-PFDYIIGTD  152 (205)
Q Consensus       139 ~-------~~~~-~fD~Ii~~d  152 (205)
                      .       ..-+ ++|+++.+-
T Consensus        70 ~~~~~~~~~~~g~~iD~li~na   91 (227)
T PRK08862         70 RHLFDAIEQQFNRAPDVLVNNW   91 (227)
T ss_pred             HHHHHHHHHHhCCCCCEEEECC
Confidence            1       1113 789888764

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=84.10  E-value=3.9  Score=32.66  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=27.2

Q ss_pred             CeEEEeCCCccHHHHHHHHh----------CCEEEEEcC-cchHHHHHHHHH
Q 028673           66 KRVIELGAGCGVAGFGMALL----------GCNVITTDQ-IEVLPLLKRNVE  106 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~----------g~~v~~~D~-~~~l~~~~~n~~  106 (205)
                      -+|+|+|+|+|.++.-+.+.          ..+++.+|. +.+.+.-++.+.
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~   71 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS   71 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence            58999999999887766542          237999999 555444444443

; PDB: 4F3N_A 1ZKD_B.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.90  E-value=4.6  Score=32.93  Aligned_cols=103  Identities=20%  Similarity=0.230  Sum_probs=55.2

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC-----CCCCceEEEEeecCCCCC
Q 028673           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~i~~~~~dw~~~~~  137 (205)
                      ++|.=+|+|+ | .++..++..|.+|++.|. ++.++.+...+..+.........-+     ....++.+.     ... 
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-----~~~-   78 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-----TDL-   78 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-----CCH-
Confidence            4677889986 3 445566677889999999 6776665554443321000000000     000112221     111 


Q ss_pred             cccCCCCccEEEEcccccC-CcChHhHHHHHHHhhCCCcEEE
Q 028673          138 IKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~-~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                       .. -...|+|+.+  +.. ......+++.+...++++..++
T Consensus        79 -~~-~~~aD~Viea--vpe~~~~k~~~~~~l~~~~~~~~ii~  116 (292)
T PRK07530         79 -ED-LADCDLVIEA--ATEDETVKRKIFAQLCPVLKPEAILA  116 (292)
T ss_pred             -HH-hcCCCEEEEc--CcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence             11 2367888876  322 2345577788888888877554

>PRK08267 short chain dehydrogenase; Provisional

Probab=83.89  E-value=9.8  Score=29.97  Aligned_cols=73  Identities=22%  Similarity=0.231  Sum_probs=42.8

Q ss_pred             CeEEEeCCCccHHHHH----HHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           66 KRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~----~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      +++|=.|++.|+ |..    +++.|++|++++. ++.++.+...+.               ..++.+...|..+......
T Consensus         2 k~vlItGasg~i-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~D~~~~~~v~~   65 (260)
T PRK08267          2 KSIFITGAASGI-GRATALLFAAEGWRVGAYDINEAGLAALAAELG---------------AGNAWTGALDVTDRAAWDA   65 (260)
T ss_pred             cEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---------------CCceEEEEecCCCHHHHHH
Confidence            468888876543 333    3455889999987 544444433222               1246777878776543211


Q ss_pred             --------CCCCccEEEEcccc
Q 028673          141 --------VAPPFDYIIGTDVV  154 (205)
Q Consensus       141 --------~~~~fD~Ii~~d~~  154 (205)
                              ..+++|+++.+--+
T Consensus        66 ~~~~~~~~~~~~id~vi~~ag~   87 (260)
T PRK08267         66 ALADFAAATGGRLDVLFNNAGI   87 (260)
T ss_pred             HHHHHHHHcCCCCCEEEECCCC
Confidence                    03578988876443

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=83.71  E-value=4.3  Score=32.23  Aligned_cols=80  Identities=19%  Similarity=0.180  Sum_probs=49.5

Q ss_pred             CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+++++|=.|++.|+-   ...++..|++|+.++. ++.++.+..+++..+             .++.+...|..+.+.
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~   73 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG-------------IEAHGYVCDVTDEDG   73 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEcCCCCHHH
Confidence            45788999999987643   2334456899988887 554454444443321             246677777776543


Q ss_pred             cc-------cCCCCccEEEEcccc
Q 028673          138 IK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ..       ..-+++|.++.+--+
T Consensus        74 ~~~~~~~~~~~~~~id~li~~ag~   97 (265)
T PRK07097         74 VQAMVSQIEKEVGVIDILVNNAGI   97 (265)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCC
Confidence            21       112468999877554

>PRK07806 short chain dehydrogenase; Provisional

Probab=83.65  E-value=19  Score=28.04  Aligned_cols=104  Identities=18%  Similarity=0.188  Sum_probs=53.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cc-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+++++|=.|+..| +|..++    +.|.+|++++. ++ ..+.+...++..             ..++.+...|..+.+
T Consensus         4 ~~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~   69 (248)
T PRK07806          4 LPGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA-------------GGRASAVGADLTDEE   69 (248)
T ss_pred             CCCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc-------------CCceEEEEcCCCCHH
Confidence            46789999997544 344443    45888888776 32 233333222221             124566677776654


Q ss_pred             Ccc-------cCCCCccEEEEcccccCC-------------cChHhHHHHHHHhhCCCcEEEEE
Q 028673          137 HIK-------AVAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~y~~-------------~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ...       ..-..+|+++.+--....             ...-.+++.+...++.+|.+++.
T Consensus        70 ~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i  133 (248)
T PRK07806         70 SVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV  133 (248)
T ss_pred             HHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence            321       111367887755322110             01224666666665555555544

>PRK07062 short chain dehydrogenase; Provisional

Probab=83.65  E-value=7.7  Score=30.68  Aligned_cols=82  Identities=16%  Similarity=0.124  Sum_probs=48.3

Q ss_pred             CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      +.+++++|=.|++.|+-   +..+++.|++|++++. ++-++.+...+....           ...++.....|..+.+.
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~~~~~   73 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF-----------PGARLLAARCDVLDEAD   73 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC-----------CCceEEEEEecCCCHHH
Confidence            45789999999877642   3333456899999988 554444443333221           01246667777776543


Q ss_pred             cc-------cCCCCccEEEEcccc
Q 028673          138 IK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ..       ..-++.|+++.+--+
T Consensus        74 v~~~~~~~~~~~g~id~li~~Ag~   97 (265)
T PRK07062         74 VAAFAAAVEARFGGVDMLVNNAGQ   97 (265)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCC
Confidence            21       112468988776543

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=83.35  E-value=5.7  Score=30.86  Aligned_cols=105  Identities=15%  Similarity=0.027  Sum_probs=57.9

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCE--EEEEcCcchH-----------HHHHHHHHHhhhhhccCCCCCCCCCceEE
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-GCN--VITTDQIEVL-----------PLLKRNVEWNTSRISQMNPGSDLLGSIQA  127 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~--v~~~D~~~~l-----------~~~~~n~~~n~~~~~~~~~~~~~~~~i~~  127 (205)
                      ...|.+|+|+=-|.|...-.++.. |++  |++.=-.+..           ..+++-...|.                ++
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~----------------e~  109 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANV----------------EV  109 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhh----------------hh
Confidence            446789999999999998888865 443  5554221111           11111112221                11


Q ss_pred             EEeecCCCCCcccCCCCccEEEEccccc-------CCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          128 VELDWGNEDHIKAVAPPFDYIIGTDVVY-------AEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       128 ~~~dw~~~~~~~~~~~~fD~Ii~~d~~y-------~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ..-..-..   . .....|+++.+...+       +......+-..+.+.|||||.+++..+.-..
T Consensus       110 ~~~~~~A~---~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p  171 (238)
T COG4798         110 IGKPLVAL---G-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP  171 (238)
T ss_pred             hCCccccc---C-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence            11000000   1 233455554432221       1456778889999999999999988765444

>PRK05866 short chain dehydrogenase; Provisional

Probab=83.23  E-value=4.8  Score=32.78  Aligned_cols=79  Identities=24%  Similarity=0.334  Sum_probs=46.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+++||=.|++.|+ |..+    ++.|++|++++. ++.++.+...+...             ...+.+...|..+.+
T Consensus        37 ~~~~k~vlItGasggI-G~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~-------------~~~~~~~~~Dl~d~~  102 (293)
T PRK05866         37 DLTGKRILLTGASSGI-GEAAAEQFARRGATVVAVARREDLLDAVADRITRA-------------GGDAMAVPCDLSDLD  102 (293)
T ss_pred             CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHH
Confidence            4467899999986654 4333    455889999998 55444444433221             124566677766654


Q ss_pred             Ccc-------cCCCCccEEEEcccc
Q 028673          137 HIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ...       ...++.|+++.+--+
T Consensus       103 ~v~~~~~~~~~~~g~id~li~~AG~  127 (293)
T PRK05866        103 AVDALVADVEKRIGGVDILINNAGR  127 (293)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            221       112478998876433

>PRK07814 short chain dehydrogenase; Provisional

Probab=83.20  E-value=20  Score=28.29  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..+++++|=.|++.| +|..++    +.|++|++++. ++.++.+...+...             ..++.+...|..+.+
T Consensus         7 ~~~~~~vlItGasgg-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~   72 (263)
T PRK07814          7 RLDDQVAVVTGAGRG-LGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA-------------GRRAHVVAADLAHPE   72 (263)
T ss_pred             cCCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHH
Confidence            356889999997544 455444    45889999998 54444444333221             124666777776654


Q ss_pred             Ccc-------cCCCCccEEEEcc
Q 028673          137 HIK-------AVAPPFDYIIGTD  152 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d  152 (205)
                      ...       ..-+++|+|+.+-
T Consensus        73 ~~~~~~~~~~~~~~~id~vi~~A   95 (263)
T PRK07814         73 ATAGLAGQAVEAFGRLDIVVNNV   95 (263)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECC
Confidence            321       0124789888654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=83.14  E-value=5.7  Score=31.03  Aligned_cols=75  Identities=23%  Similarity=0.220  Sum_probs=43.3

Q ss_pred             CeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc--
Q 028673           66 KRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI--  138 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~--  138 (205)
                      ++||=.|+. |.+|..++    +.|.+|++++. ++-.+.+...+...             ..++.+...|+.+.+..  
T Consensus         2 ~~vlItGa~-g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~   67 (255)
T TIGR01963         2 KTALVTGAA-SGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA-------------GGSVIYLVADVTKEDEIAD   67 (255)
T ss_pred             CEEEEcCCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEECCCCCHHHHHH
Confidence            467777754 44455554    34889999988 54444443333222             13567778788776422  


Q ss_pred             -----ccCCCCccEEEEcccc
Q 028673          139 -----KAVAPPFDYIIGTDVV  154 (205)
Q Consensus       139 -----~~~~~~fD~Ii~~d~~  154 (205)
                           ....++.|.|+.+...
T Consensus        68 ~~~~~~~~~~~~d~vi~~a~~   88 (255)
T TIGR01963        68 MIAAAAAEFGGLDILVNNAGI   88 (255)
T ss_pred             HHHHHHHhcCCCCEEEECCCC
Confidence                 1123468888876543

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=83.10  E-value=14  Score=28.54  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=23.4

Q ss_pred             CCCCCeEEEeCCCc-cHH-HHHHHHhCCEEEEEcC
Q 028673           62 KLKGKRVIELGAGC-GVA-GFGMALLGCNVITTDQ   94 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~-sl~~a~~g~~v~~~D~   94 (205)
                      +++|++||=+|+|. |.. .-.+...|++|+.++-
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            46899999999985 432 2344566888888863

>PRK06172 short chain dehydrogenase; Provisional

Probab=82.82  E-value=3.3  Score=32.54  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=47.3

Q ss_pred             CCCCeEEEeCCCccHHH---HHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~s---l~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++++++|=.|++.|+-.   ..+++.|++|++++. ++-++.+...+...             ..++.+...|..+....
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i   71 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA-------------GGEALFVACDVTRDAEV   71 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence            46889999998665422   233455889999998 55444444444332             13467777777665422


Q ss_pred             c-------cCCCCccEEEEcccc
Q 028673          139 K-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d~~  154 (205)
                      .       ...+++|.|+.+.-.
T Consensus        72 ~~~~~~~~~~~g~id~li~~ag~   94 (253)
T PRK06172         72 KALVEQTIAAYGRLDYAFNNAGI   94 (253)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence            1       112468998876543

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=82.57  E-value=7.7  Score=31.79  Aligned_cols=96  Identities=20%  Similarity=0.178  Sum_probs=51.5

Q ss_pred             CCCCCeEEEeCC-C-ccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe-ecCCCC
Q 028673           62 KLKGKRVIELGA-G-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGc-G-tGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~-dw~~~~  136 (205)
                      ..+|.+||=.|+ | .|...+.+|+. |++|++++. ++-.+.++.    .+..           .-+..... +|.+..
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~-----------~vi~~~~~~~~~~~~  200 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD-----------VAFNYKTVKSLEETL  200 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC-----------EEEeccccccHHHHH
Confidence            346789998985 3 47777777764 888888887 544444432    2210           00111100 111100


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      . ....+.+|+|+-+  +-     ...+....++++++|+++..
T Consensus       201 ~-~~~~~gvdvv~d~--~G-----~~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       201 K-KASPDGYDCYFDN--VG-----GEFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             H-HhCCCCeEEEEEC--CC-----HHHHHHHHHHhCcCcEEEEe
Confidence            0 0112358888743  21     13456777888999998865

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=82.47  E-value=4.8  Score=37.42  Aligned_cols=103  Identities=21%  Similarity=0.203  Sum_probs=58.8

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC-----CCCCceEEEEeecCCCCC
Q 028673           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~i~~~~~dw~~~~~  137 (205)
                      ++|.=||+|+ | -++..+|..|.+|+..|. ++.++.+...++.+.....+...-+     ....++.+.. +.   + 
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~---~-  388 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTL-DY---A-  388 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH---H-
Confidence            4789999997 3 456667788999999999 7788777666654322111100000     0012233211 11   1 


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEE
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI  177 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~  177 (205)
                         .-...|+||=+ +.-..+.-..+++.+.+.++|+..+
T Consensus       389 ---~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~il  424 (715)
T PRK11730        389 ---GFERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTIL  424 (715)
T ss_pred             ---HhcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEE
Confidence               12356777765 3333444557888888888777543

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=82.36  E-value=13  Score=31.74  Aligned_cols=40  Identities=35%  Similarity=0.347  Sum_probs=26.0

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHH
Q 028673           63 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLK  102 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~  102 (205)
                      ..+.+||=.|+|. |+..+.+|+. |++ |+.+|. ++-++.++
T Consensus       184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~  227 (393)
T TIGR02819       184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQAR  227 (393)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH
Confidence            3567777688875 7777666654 776 666677 44444444

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK09242 tropinone reductase; Provisional

Probab=82.32  E-value=8.6  Score=30.26  Aligned_cols=81  Identities=12%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=.|++.|+-   ...+++.|++|++++. ++.++....++....           ...++.....|..+.+.
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dl~~~~~   74 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF-----------PEREVHGLAADVSDDED   74 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-----------CCCeEEEEECCCCCHHH
Confidence            35788999999866542   2233455889999988 554554444443321           01346666767665432


Q ss_pred             cc-------cCCCCccEEEEccc
Q 028673          138 IK-------AVAPPFDYIIGTDV  153 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~  153 (205)
                      ..       ..-+++|.++.+--
T Consensus        75 ~~~~~~~~~~~~g~id~li~~ag   97 (257)
T PRK09242         75 RRAILDWVEDHWDGLHILVNNAG   97 (257)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11247898876653

>PRK07035 short chain dehydrogenase; Provisional

Probab=82.22  E-value=7.8  Score=30.36  Aligned_cols=79  Identities=19%  Similarity=0.295  Sum_probs=46.1

Q ss_pred             CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++++||=.|++.|+-   ...+++.|++|++++. ++.++.+.+.+...+             .++.....|..+...
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~   71 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG-------------GKAEALACHIGEMEQ   71 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEEcCCCCHHH
Confidence            35678899999887643   2233456889999998 554444443333221             235566666665543


Q ss_pred             cc-------cCCCCccEEEEccc
Q 028673          138 IK-------AVAPPFDYIIGTDV  153 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~  153 (205)
                      ..       ..-+++|+++.+-.
T Consensus        72 ~~~~~~~~~~~~~~id~li~~ag   94 (252)
T PRK07035         72 IDALFAHIRERHGRLDILVNNAA   94 (252)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11246899886543

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=82.12  E-value=5.9  Score=31.15  Aligned_cols=79  Identities=20%  Similarity=0.311  Sum_probs=46.8

Q ss_pred             CCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      +.++++|=.|++.|+-   +..+++.|++|++++. ++.++.+...++..             ..++.....|..+.+..
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~   73 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE-------------GIKAHAAPFNVTHKQEV   73 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEecCCCCHHHH
Confidence            4688999999776532   2233445889999998 54444443333322             12456667777765432


Q ss_pred             c-------cCCCCccEEEEcccc
Q 028673          139 K-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d~~  154 (205)
                      .       ...+++|.++.+--.
T Consensus        74 ~~~~~~~~~~~~~id~vi~~ag~   96 (254)
T PRK08085         74 EAAIEHIEKDIGPIDVLINNAGI   96 (254)
T ss_pred             HHHHHHHHHhcCCCCEEEECCCc
Confidence            1       112468999877543

>cd08293 PTGR2 Prostaglandin reductase

Probab=82.05  E-value=3.6  Score=34.02  Aligned_cols=37  Identities=35%  Similarity=0.534  Sum_probs=25.6

Q ss_pred             CeEEEeCC-C-ccHHHHHHHHh-CC-EEEEEcC-cchHHHHH
Q 028673           66 KRVIELGA-G-CGVAGFGMALL-GC-NVITTDQ-IEVLPLLK  102 (205)
Q Consensus        66 ~~VLdlGc-G-tGl~sl~~a~~-g~-~v~~~D~-~~~l~~~~  102 (205)
                      .+||=.|+ | .|...+.+|+. |+ +|++++. ++-.+.++
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~  197 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLK  197 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            78998987 3 47777777764 87 7999887 44444443

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=81.98  E-value=3.5  Score=30.98  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=27.3

Q ss_pred             CCCCCCeEEEeCCC-c-cH-HHHHHHHhCCEEEEEcC
Q 028673           61 SKLKGKRVIELGAG-C-GV-AGFGMALLGCNVITTDQ   94 (205)
Q Consensus        61 ~~~~~~~VLdlGcG-t-Gl-~sl~~a~~g~~v~~~D~   94 (205)
                      ..+++++||=+|+| + |. ++-.+...|++|+.++.
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r   76 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS   76 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC
Confidence            46789999999999 3 76 56666677889888886

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06194 hypothetical protein; Provisional

Probab=81.97  E-value=4.2  Score=32.66  Aligned_cols=78  Identities=19%  Similarity=0.283  Sum_probs=44.7

Q ss_pred             CCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++++|=.|++.|+ |..+    ++.|++|+++|. ++.++.....+...             ..++.+...|..+.+.
T Consensus         4 ~~~k~vlVtGasggI-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~d~~~   69 (287)
T PRK06194          4 FAGKVAVITGAASGF-GLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ-------------GAEVLGVRTDVSDAAQ   69 (287)
T ss_pred             CCCCEEEEeCCccHH-HHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence            357889988876543 4443    445889999998 44444333322221             1246667777665543


Q ss_pred             ccc-------CCCCccEEEEcccc
Q 028673          138 IKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ...       ..+++|+|+.+--+
T Consensus        70 ~~~~~~~~~~~~g~id~vi~~Ag~   93 (287)
T PRK06194         70 VEALADAALERFGAVHLLFNNAGV   93 (287)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            211       12467988876544

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=81.91  E-value=12  Score=29.69  Aligned_cols=91  Identities=19%  Similarity=0.195  Sum_probs=50.0

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++.+||=.|||. |...+.+|+. |.+ |++++. ++-.+.+++    .+..           ..+  ..  ... . 
T Consensus        95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~----~g~~-----------~~~--~~--~~~-~-  153 (277)
T cd08255          95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA----LGPA-----------DPV--AA--DTA-D-  153 (277)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH----cCCC-----------ccc--cc--cch-h-
Confidence            34677888888874 6666656654 777 999987 554443332    1100           000  00  000 0 


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                       ......+|+|+-+  .    .....+....+.++++|+++..
T Consensus       154 -~~~~~~~d~vl~~--~----~~~~~~~~~~~~l~~~g~~~~~  189 (277)
T cd08255         154 -EIGGRGADVVIEA--S----GSPSALETALRLLRDRGRVVLV  189 (277)
T ss_pred             -hhcCCCCCEEEEc--c----CChHHHHHHHHHhcCCcEEEEE
Confidence             0113468888753  1    1134566667778888887654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=81.86  E-value=16  Score=28.18  Aligned_cols=78  Identities=26%  Similarity=0.300  Sum_probs=45.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHH----HhCCEEEEE-cC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      +.++++|=.|+ +|-+|..++    +.|++|+.+ +. ++..+.+...+...             ..++.+...|..+.+
T Consensus         3 ~~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~   68 (247)
T PRK05565          3 LMGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE-------------GGDAIAVKADVSSEE   68 (247)
T ss_pred             CCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHH
Confidence            45678888886 444555444    458898887 87 44444333333322             134677787777664


Q ss_pred             Cccc-------CCCCccEEEEcccc
Q 028673          137 HIKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ....       ..+++|.|+.+.-.
T Consensus        69 ~~~~~~~~~~~~~~~id~vi~~ag~   93 (247)
T PRK05565         69 DVENLVEQIVEKFGKIDILVNNAGI   93 (247)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCc
Confidence            3211       11368998876543

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=81.67  E-value=6.4  Score=31.07  Aligned_cols=79  Identities=19%  Similarity=0.247  Sum_probs=45.7

Q ss_pred             CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .+++++||=.|++.|+-   +..+++.|++|++++..+-.+.+.+.+...             ..++.+...|..+.+..
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i   78 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE-------------GRKVTFVQVDLTKPESA   78 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence            45789999999977643   223345689988887643223333322221             13466777777665432


Q ss_pred             c-------cCCCCccEEEEccc
Q 028673          139 K-------AVAPPFDYIIGTDV  153 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d~  153 (205)
                      .       ..-+++|.++.+.-
T Consensus        79 ~~~~~~~~~~~g~id~li~~ag  100 (258)
T PRK06935         79 EKVVKEALEEFGKIDILVNNAG  100 (258)
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            1       11246898887643

>PRK06181 short chain dehydrogenase; Provisional

Probab=81.60  E-value=14  Score=29.09  Aligned_cols=75  Identities=20%  Similarity=0.217  Sum_probs=42.1

Q ss_pred             CeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           66 KRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++||=.|+..| +|..+    +..|++|++++. ++..+.+...+...             ..++.+...|..+.+....
T Consensus         2 ~~vlVtGasg~-iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~~~   67 (263)
T PRK06181          2 KVVIITGASEG-IGRALAVRLARAGAQLVLAARNETRLASLAQELADH-------------GGEALVVPTDVSDAEACER   67 (263)
T ss_pred             CEEEEecCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHHHH
Confidence            46777776443 44444    345889999998 44444333333322             1356677777766543211


Q ss_pred             -------CCCCccEEEEcccc
Q 028673          141 -------VAPPFDYIIGTDVV  154 (205)
Q Consensus       141 -------~~~~fD~Ii~~d~~  154 (205)
                             .-++.|.|+.+--.
T Consensus        68 ~~~~~~~~~~~id~vi~~ag~   88 (263)
T PRK06181         68 LIEAAVARFGGIDILVNNAGI   88 (263)
T ss_pred             HHHHHHHHcCCCCEEEECCCc
Confidence                   11368988876443

>PRK06125 short chain dehydrogenase; Provisional

Probab=81.58  E-value=8.7  Score=30.29  Aligned_cols=79  Identities=24%  Similarity=0.339  Sum_probs=47.2

Q ss_pred             CCCCeEEEeCCCccHHHHH----HHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~----~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ++++++|=.|++.|+ |..    +++.|++|++++. ++..+.+...+....            ..++.+...|..+.+.
T Consensus         5 ~~~k~vlItG~~~gi-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~   71 (259)
T PRK06125          5 LAGKRVLITGASKGI-GAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH------------GVDVAVHALDLSSPEA   71 (259)
T ss_pred             CCCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHH
Confidence            467899999986653 333    4456899999998 554444444333221            1246667777766543


Q ss_pred             cc---cCCCCccEEEEcccc
Q 028673          138 IK---AVAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~---~~~~~fD~Ii~~d~~  154 (205)
                      ..   ..-++.|.++.+.-+
T Consensus        72 ~~~~~~~~g~id~lv~~ag~   91 (259)
T PRK06125         72 REQLAAEAGDIDILVNNAGA   91 (259)
T ss_pred             HHHHHHHhCCCCEEEECCCC
Confidence            21   112478888876543

>PRK05872 short chain dehydrogenase; Provisional

Probab=81.54  E-value=5.1  Score=32.58  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=46.4

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..+++++||=.|++.|+   ++..+++.|++|++++. ++.++.+.+.+..              ...+.....|..+.+
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~--------------~~~~~~~~~Dv~d~~   70 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG--------------DDRVLTVVADVTDLA   70 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--------------CCcEEEEEecCCCHH
Confidence            35678999999987664   23333456899999988 4444333322211              123444556776654


Q ss_pred             Ccc-------cCCCCccEEEEcccc
Q 028673          137 HIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ...       ...+++|++|.+--+
T Consensus        71 ~v~~~~~~~~~~~g~id~vI~nAG~   95 (296)
T PRK05872         71 AMQAAAEEAVERFGGIDVVVANAGI   95 (296)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCc
Confidence            321       112578999887554

>PRK07478 short chain dehydrogenase; Provisional

Probab=81.41  E-value=5.5  Score=31.33  Aligned_cols=79  Identities=23%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             CCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++++++|=.|++.|+-   ...+++.|++|++++. ++-++.+...++..+             .++.+...|..+.+..
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~   70 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG-------------GEAVALAGDVRDEAYA   70 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHHH
Confidence            4678899888876532   2333456899999987 554444444433321             2456667676655422


Q ss_pred             c-------cCCCCccEEEEcccc
Q 028673          139 K-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d~~  154 (205)
                      .       ..-+++|.++.+--+
T Consensus        71 ~~~~~~~~~~~~~id~li~~ag~   93 (254)
T PRK07478         71 KALVALAVERFGGLDIAFNNAGT   93 (254)
T ss_pred             HHHHHHHHHhcCCCCEEEECCCC
Confidence            1       112478988866533

>PRK07774 short chain dehydrogenase; Provisional

Probab=81.40  E-value=6.7  Score=30.60  Aligned_cols=78  Identities=24%  Similarity=0.330  Sum_probs=44.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++++|=.|+. |.+|..++    +.|++|++++. ++..+.+...+...             ..++.....|..+.+.
T Consensus         4 ~~~k~vlItGas-g~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~   69 (250)
T PRK07774          4 FDDKVAIVTGAA-GGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD-------------GGTAIAVQVDVSDPDS   69 (250)
T ss_pred             cCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHH
Confidence            467889988854 44455554    45889999998 44444443333221             1234566666665542


Q ss_pred             cc-------cCCCCccEEEEcccc
Q 028673          138 IK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ..       ...+++|+||.+--+
T Consensus        70 ~~~~~~~~~~~~~~id~vi~~ag~   93 (250)
T PRK07774         70 AKAMADATVSAFGGIDYLVNNAAI   93 (250)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            21       112468999876544

>KOG3350 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.34  E-value=3.1  Score=31.66  Aligned_cols=61  Identities=18%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             EEEEeecCCCCCccc-CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          126 QAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       126 ~~~~~dw~~~~~~~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ++..+|...+.+++. ...+||+|++-+++...+.+.+-..+++.+.+++-+++++..-+..
T Consensus       116 eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeime  177 (217)
T KOG3350|consen  116 EFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIME  177 (217)
T ss_pred             eeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhH
Confidence            667777777765442 3567999999888888888889999999999998888888765543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=81.28  E-value=5.7  Score=28.48  Aligned_cols=77  Identities=21%  Similarity=0.298  Sum_probs=43.6

Q ss_pred             CCCCCCeEEEeCCCc-c-HHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGC-G-VAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt-G-l~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..+++++||=+|+|- | .....++..|++ |+.+.. .+-.+.+.+.+  .+               ..+....|.+..
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--~~---------------~~~~~~~~~~~~   70 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--GG---------------VNIEAIPLEDLE   70 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--TG---------------CSEEEEEGGGHC
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--Cc---------------cccceeeHHHHH
Confidence            356899999999983 3 344455566876 999887 44222222222  11               123333444433


Q ss_pred             CcccCCCCccEEEEcccccCC
Q 028673          137 HIKAVAPPFDYIIGTDVVYAE  157 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~  157 (205)
                         ....++|+|+.+-..-+.
T Consensus        71 ---~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen   71 ---EALQEADIVINATPSGMP   88 (135)
T ss_dssp             ---HHHHTESEEEE-SSTTST
T ss_pred             ---HHHhhCCeEEEecCCCCc
Confidence               123479999988655443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=81.23  E-value=9.2  Score=33.24  Aligned_cols=105  Identities=21%  Similarity=0.215  Sum_probs=63.9

Q ss_pred             eEEEeCC-Cc------cHHHHHHHHhCCE--EEEEcC--cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           67 RVIELGA-GC------GVAGFGMALLGCN--VITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        67 ~VLdlGc-Gt------Gl~sl~~a~~g~~--v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      .|+=+|= |+      |=++.++.++|.+  ++++|.  |.+++.++....+-+.               .+...+-+..
T Consensus       102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v---------------~~f~~~~~~~  166 (451)
T COG0541         102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV---------------PFFGSGTEKD  166 (451)
T ss_pred             EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC---------------ceecCCCCCC
Confidence            4666653 43      4556666676776  788997  7799999988777643               3333211111


Q ss_pred             C-Cc------ccCCCCccEEEEcccccCCcChHhHHH---HHHHhhCCCcEEEEEEeeccch
Q 028673          136 D-HI------KAVAPPFDYIIGTDVVYAEHLLEPLLQ---TIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       136 ~-~~------~~~~~~fD~Ii~~d~~y~~~~~~~ll~---~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      + +.      ......||+||. |+--..+.-+.|+.   .++..++|.=++++++..-.+.
T Consensus       167 Pv~Iak~al~~ak~~~~DvvIv-DTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd  227 (451)
T COG0541         167 PVEIAKAALEKAKEEGYDVVIV-DTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD  227 (451)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEE-eCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence            1 00      012457999987 55444444445554   4566689999999998754443

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=81.08  E-value=28  Score=28.23  Aligned_cols=84  Identities=19%  Similarity=0.227  Sum_probs=54.1

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..+.++.+|-=|...|+   ++..+++.|++|+.++. ++.++..+......+.          ...++.....|..+.+
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~   73 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGY----------TGGKVLAIVCDVSKEV   73 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC----------CCCeeEEEECcCCCHH
Confidence            45689999999998874   45677788999999998 6666665555444322          1234666666665443


Q ss_pred             Cc--------ccCCCCccEEEEcccc
Q 028673          137 HI--------KAVAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~--------~~~~~~fD~Ii~~d~~  154 (205)
                      +.        ....++.|+.+.+.-.
T Consensus        74 ~~~~l~~~~~~~~~GkidiLvnnag~   99 (270)
T KOG0725|consen   74 DVEKLVEFAVEKFFGKIDILVNNAGA   99 (270)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEcCCc
Confidence            21        1114678888766433

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=81.03  E-value=1.2  Score=40.18  Aligned_cols=33  Identities=21%  Similarity=0.064  Sum_probs=27.3

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ   94 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~   94 (205)
                      .-++..||||||-.|.....+++.   |.-|+++|+
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl   77 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDL   77 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeee
Confidence            335678999999999999998876   345999998

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=81.02  E-value=10  Score=30.89  Aligned_cols=98  Identities=20%  Similarity=0.192  Sum_probs=50.9

Q ss_pred             eEEEeCCCc-c-HHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           67 RVIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        67 ~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      +|+=+|+|. | .++..+++.|.+|++++.++-++.++    .++......      ...... .  .............
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~----~~g~~~~~~------~~~~~~-~--~~~~~~~~~~~~~   68 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALR----ERGLVIRSD------HGDAVV-P--GPVITDPEELTGP   68 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHH----hCCeEEEeC------CCeEEe-c--ceeecCHHHccCC
Confidence            467788886 3 45666667788899998733333322    222211000      000110 0  0001111111357


Q ss_pred             ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      +|+|+.+-.   ....+.+++.+...++++..++..
T Consensus        69 ~d~vilavk---~~~~~~~~~~l~~~~~~~~~ii~~  101 (305)
T PRK12921         69 FDLVILAVK---AYQLDAAIPDLKPLVGEDTVIIPL  101 (305)
T ss_pred             CCEEEEEec---ccCHHHHHHHHHhhcCCCCEEEEe
Confidence            898877633   235678888888888777654433

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=80.97  E-value=13  Score=28.69  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=22.6

Q ss_pred             CCCCeEEEeCCCc-c-HHHHHHHHhCCE-EEEEcCc
Q 028673           63 LKGKRVIELGAGC-G-VAGFGMALLGCN-VITTDQI   95 (205)
Q Consensus        63 ~~~~~VLdlGcGt-G-l~sl~~a~~g~~-v~~~D~~   95 (205)
                      +++.+||=+|||. | -+...++..|.. ++.+|..
T Consensus        19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            3678999999985 3 334445566764 9999863

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.96  E-value=6.4  Score=30.59  Aligned_cols=77  Identities=22%  Similarity=0.165  Sum_probs=43.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++++|=.|+ +|.+|..++    ..|++|++++. ++..+.....+...             ..++.+...|..+...
T Consensus         5 ~~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~   70 (239)
T PRK07666          5 LQGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY-------------GVKVVIATADVSDYEE   70 (239)
T ss_pred             CCCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------------CCeEEEEECCCCCHHH
Confidence            45678888996 555566554    44889999998 44333333333222             1246666666655432


Q ss_pred             cc-------cCCCCccEEEEccc
Q 028673          138 IK-------AVAPPFDYIIGTDV  153 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~  153 (205)
                      ..       ...++.|.|+.+--
T Consensus        71 ~~~~~~~~~~~~~~id~vi~~ag   93 (239)
T PRK07666         71 VTAAIEQLKNELGSIDILINNAG   93 (239)
T ss_pred             HHHHHHHHHHHcCCccEEEEcCc
Confidence            21       11246888887643

>PRK07890 short chain dehydrogenase; Provisional

Probab=80.96  E-value=7.8  Score=30.40  Aligned_cols=78  Identities=23%  Similarity=0.240  Sum_probs=45.4

Q ss_pred             CCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++++||=.|++.|+-   +..++..|++|++++. ++-.+.+...+...             ..++.....|..+.+...
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~   70 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL-------------GRRALAVPTDITDEDQCA   70 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-------------CCceEEEecCCCCHHHHH
Confidence            578899899866532   2334456889999998 54334333333222             124667777776554321


Q ss_pred             -------cCCCCccEEEEcccc
Q 028673          140 -------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       140 -------~~~~~fD~Ii~~d~~  154 (205)
                             ..-+++|+|+.+.-.
T Consensus        71 ~~~~~~~~~~g~~d~vi~~ag~   92 (258)
T PRK07890         71 NLVALALERFGRVDALVNNAFR   92 (258)
T ss_pred             HHHHHHHHHcCCccEEEECCcc
Confidence                   112468988876543

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=80.96  E-value=8.1  Score=34.92  Aligned_cols=86  Identities=17%  Similarity=0.158  Sum_probs=47.0

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      +...|++||=.|+. |.+|..++    +.|++|++++. .+-++.+..++....... . .  .....++.+...|..+.
T Consensus        76 ~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~-~-G--a~~~~~v~iV~gDLtD~  150 (576)
T PLN03209         76 DTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDV-E-G--TQPVEKLEIVECDLEKP  150 (576)
T ss_pred             ccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhcccc-c-c--ccccCceEEEEecCCCH
Confidence            34467888888874 44555544    45889998887 444433333332211000 0 0  00113477788787765


Q ss_pred             CCcccCCCCccEEEEc
Q 028673          136 DHIKAVAPPFDYIIGT  151 (205)
Q Consensus       136 ~~~~~~~~~fD~Ii~~  151 (205)
                      +.....-...|+||.+
T Consensus       151 esI~~aLggiDiVVn~  166 (576)
T PLN03209        151 DQIGPALGNASVVICC  166 (576)
T ss_pred             HHHHHHhcCCCEEEEc
Confidence            5433333568988776

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=80.85  E-value=7.6  Score=32.22  Aligned_cols=98  Identities=17%  Similarity=0.134  Sum_probs=50.2

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .++.+||=.|+|. |...+.+++ .|+ +|++++. ++-.+.+++    .+..           .-+.....+|.+.-..
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~-----------~~i~~~~~~~~~~l~~  235 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT-----------IVLDPTEVDVVAEVRK  235 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC-----------EEECCCccCHHHHHHH
Confidence            3577888888753 555555554 477 6888887 554444432    1210           0011111111100000


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ......+|+|+-+      ......++...+.++++|+++..-
T Consensus       236 ~~~~~~~d~vid~------~g~~~~~~~~~~~l~~~G~~v~~g  272 (351)
T cd08233         236 LTGGGGVDVSFDC------AGVQATLDTAIDALRPRGTAVNVA  272 (351)
T ss_pred             HhCCCCCCEEEEC------CCCHHHHHHHHHhccCCCEEEEEc
Confidence            0112348988864      111345666677888999877653

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK09291 short chain dehydrogenase; Provisional

Probab=80.79  E-value=6.7  Score=30.75  Aligned_cols=74  Identities=22%  Similarity=0.238  Sum_probs=43.3

Q ss_pred             CCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           65 GKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      +++||=.|++.|+ |..+    ++.|++|++++. ++..+.+.......             ...+.+...|+.+.....
T Consensus         2 ~~~vlVtGasg~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~   67 (257)
T PRK09291          2 SKTILITGAGSGF-GREVALRLARKGHNVIAGVQIAPQVTALRAEAARR-------------GLALRVEKLDLTDAIDRA   67 (257)
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcceEEEeeCCCHHHHH
Confidence            4578888886543 4433    345889998887 44333333322222             124677788887764332


Q ss_pred             c-CCCCccEEEEcc
Q 028673          140 A-VAPPFDYIIGTD  152 (205)
Q Consensus       140 ~-~~~~fD~Ii~~d  152 (205)
                      . ...+.|+++.+-
T Consensus        68 ~~~~~~id~vi~~a   81 (257)
T PRK09291         68 QAAEWDVDVLLNNA   81 (257)
T ss_pred             HHhcCCCCEEEECC
Confidence            1 123789888764

>PRK08589 short chain dehydrogenase; Validated

Probab=80.77  E-value=12  Score=29.81  Aligned_cols=79  Identities=23%  Similarity=0.315  Sum_probs=46.4

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++++++|=.|++.|+   ++..+++.|++|++++..+.++.....+...             ..++.+...|..+.+...
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~   70 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSN-------------GGKAKAYHVDISDEQQVK   70 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhc-------------CCeEEEEEeecCCHHHHH
Confidence            468899999987764   2333445689999998753233333333222             124667777777654321


Q ss_pred             -------cCCCCccEEEEcccc
Q 028673          140 -------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       140 -------~~~~~fD~Ii~~d~~  154 (205)
                             ...++.|+++.+--+
T Consensus        71 ~~~~~~~~~~g~id~li~~Ag~   92 (272)
T PRK08589         71 DFASEIKEQFGRVDVLFNNAGV   92 (272)
T ss_pred             HHHHHHHHHcCCcCEEEECCCC
Confidence                   112468988876543

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=80.77  E-value=1.7  Score=32.91  Aligned_cols=93  Identities=22%  Similarity=0.293  Sum_probs=49.5

Q ss_pred             CeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc---c-
Q 028673           66 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI---K-  139 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~---~-  139 (205)
                      +.|+.||||.=..+..+...  +.+++=+|.|++++.-++-++.+.....         .+.++...|..+..-.   . 
T Consensus        80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~---------~~~~~v~~Dl~~~~~~~~L~~  150 (183)
T PF04072_consen   80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPP---------ANYRYVPADLRDDSWIDALPK  150 (183)
T ss_dssp             SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHH---------EESSEEES-TTSHHHHHHHHH
T ss_pred             cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCC---------cceeEEeccccchhhHHHHHH
Confidence            38999999987666666664  4468888889888877777766643110         1234566555542211   1 


Q ss_pred             --cCCCCccEEEEcccccC--CcChHhHHHHH
Q 028673          140 --AVAPPFDYIIGTDVVYA--EHLLEPLLQTI  167 (205)
Q Consensus       140 --~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~  167 (205)
                        ......-++++-.++++  ++....+++.+
T Consensus       151 ~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~i  182 (183)
T PF04072_consen  151 AGFDPDRPTLFIAEGVLMYLSPEQVDALLRAI  182 (183)
T ss_dssp             CTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred             hCCCCCCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence              01234445666565544  33344555443

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=80.75  E-value=3  Score=31.84  Aligned_cols=113  Identities=17%  Similarity=0.195  Sum_probs=53.9

Q ss_pred             eEEEeCCCc-cHH-HHHHHHhCCEEEEEcC-cchHHHHHHH------------HHHhhhhhccCCCCCCCCCceEEEEee
Q 028673           67 RVIELGAGC-GVA-GFGMALLGCNVITTDQ-IEVLPLLKRN------------VEWNTSRISQMNPGSDLLGSIQAVELD  131 (205)
Q Consensus        67 ~VLdlGcGt-Gl~-sl~~a~~g~~v~~~D~-~~~l~~~~~n------------~~~n~~~~~~~~~~~~~~~~i~~~~~d  131 (205)
                      +|-=+|.|- |+. +..+|..|.+|+++|. ++-++.+..-            ++.+.           ...+..+. .+
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~-----------~~~~l~~t-~~   69 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENV-----------SAGRLRAT-TD   69 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHH-----------HTTSEEEE-SE
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhcccc-----------ccccchhh-hh
Confidence            455567774 533 5566678999999999 6654443311            00010           01122221 11


Q ss_pred             cCCCCCcccCCCCccEEEEc-ccccCC------cChHhHHHHHHHhhCCCcEEEEEEeeccchhHHHHHHhhh
Q 028673          132 WGNEDHIKAVAPPFDYIIGT-DVVYAE------HLLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFCWTRIT  197 (205)
Q Consensus       132 w~~~~~~~~~~~~fD~Ii~~-d~~y~~------~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~~~~~~~~~  197 (205)
                      +..      .....|+++.+ ++-+..      ......++.+.+.++++..+++.....-...+...+..++
T Consensus        70 ~~~------ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile  136 (185)
T PF03721_consen   70 IEE------AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILE  136 (185)
T ss_dssp             HHH------HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHH
T ss_pred             hhh------hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhh
Confidence            111      01245666443 333432      3356778888888888777666655555544434433333

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=80.74  E-value=4  Score=35.33  Aligned_cols=88  Identities=14%  Similarity=0.071  Sum_probs=52.8

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .+.|++|+=+|||. |......++ .|++|+.+|. +.-...++.    .+.               +....  .  +  
T Consensus       199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~---------------~~~~~--~--e--  253 (413)
T cd00401         199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGY---------------EVMTM--E--E--  253 (413)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCC---------------EEccH--H--H--
Confidence            45799999999996 766555554 5889999998 543333332    221               11111  0  1  


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHH-HHHHhhCCCcEEEEEEe
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQ-TIFALSGPKTTILVMFS  182 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~-~~~~~l~~~g~~~i~~~  182 (205)
                        .-...|+|+.+      ......+. .....+++||.++.+-.
T Consensus       254 --~v~~aDVVI~a------tG~~~~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         254 --AVKEGDIFVTT------TGNKDIITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             --HHcCCCEEEEC------CCCHHHHHHHHHhcCCCCcEEEEeCC
Confidence              11356888764      22234444 44778899998876653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=80.71  E-value=11  Score=31.25  Aligned_cols=97  Identities=22%  Similarity=0.243  Sum_probs=50.6

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeec---C-
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW---G-  133 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw---~-  133 (205)
                      ..++.+||=.|+|. |...+.+|+. |++ |++++- ++-.+.+++ +   +..           .-+.....++   . 
T Consensus       160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~-~---g~~-----------~vi~~~~~~~~~~~~  224 (343)
T cd05285         160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE-L---GAT-----------HTVNVRTEDTPESAE  224 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-c---CCc-----------EEeccccccchhHHH
Confidence            44677887788764 6666666654 777 888876 444443322 1   110           0011111111   0 


Q ss_pred             CCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          134 NEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       134 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ..... .....+|+|+-+  .    .....+....+.++++|+++..
T Consensus       225 ~~~~~-~~~~~~d~vld~--~----g~~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         225 KIAEL-LGGKGPDVVIEC--T----GAESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             HHHHH-hCCCCCCEEEEC--C----CCHHHHHHHHHHhhcCCEEEEE
Confidence            00000 113458988865  1    1233667777888888887654

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=80.69  E-value=18  Score=29.24  Aligned_cols=112  Identities=13%  Similarity=0.077  Sum_probs=62.1

Q ss_pred             CCCeEEEeCCCccHHHH----HHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           64 KGKRVIELGAGCGVAGF----GMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl----~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+...+|||+|+--=.-    +++.+|.  +.+.+|+ ...++...+.+...-.           .-.+.....+....-
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-----------~l~v~~l~~~~~~~L  146 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-----------GLEVNALCGDYELAL  146 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-----------CCeEeehhhhHHHHH
Confidence            46789999999763332    2334443  6999999 4555544443333211           112333333322211


Q ss_pred             -CcccCCCCccEEEEcccc--cCCcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          137 -HIKAVAPPFDYIIGTDVV--YAEHLLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       137 -~~~~~~~~fD~Ii~~d~~--y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                       .++. .++==.++....+  +.+.....++..+...++||-.+++....+.+.
T Consensus       147 a~~~~-~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~A  199 (321)
T COG4301         147 AELPR-GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPA  199 (321)
T ss_pred             hcccC-CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHH
Confidence             1111 1111122223333  346667789999999999999999987766654

>PRK08703 short chain dehydrogenase; Provisional

Probab=80.51  E-value=12  Score=29.03  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=27.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHH
Q 028673           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNV  105 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~  105 (205)
                      .++++||=.||+.| +|..++    +.|++|++++. ++.++.....+
T Consensus         4 l~~k~vlItG~sgg-iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l   50 (239)
T PRK08703          4 LSDKTILVTGASQG-LGEQVAKAYAAAGATVILVARHQKKLEKVYDAI   50 (239)
T ss_pred             CCCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH
Confidence            46789999997544 454444    45889999998 54444443333

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=80.14  E-value=20  Score=29.51  Aligned_cols=37  Identities=27%  Similarity=0.342  Sum_probs=25.6

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEEcC-cch
Q 028673           61 SKLKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEV   97 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt-Gl~sl~~a-~~g~~v~~~D~-~~~   97 (205)
                      ....+++|+=+|+|. |...+..+ ..|++|+.+|. ++.
T Consensus       148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~  187 (296)
T PRK08306        148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAH  187 (296)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            345789999999984 44433333 45889999998 443

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=80.05  E-value=5.4  Score=32.85  Aligned_cols=98  Identities=18%  Similarity=0.182  Sum_probs=50.1

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ...+.+||-.|+|. |...+.+|+. |.+|+++.. ++..+.+++    .+..           .-+.....++.+.-..
T Consensus       157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~----~g~~-----------~v~~~~~~~~~~~l~~  221 (337)
T cd08261         157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE----LGAD-----------DTINVGDEDVAARLRE  221 (337)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH----hCCC-----------EEecCcccCHHHHHHH
Confidence            34677899998763 5565656654 888888865 444444322    1110           0011111011000000


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ......+|+++.+  +    .-...+..+.+.++++|+++..
T Consensus       222 ~~~~~~vd~vld~--~----g~~~~~~~~~~~l~~~G~~i~~  257 (337)
T cd08261         222 LTDGEGADVVIDA--T----GNPASMEEAVELVAHGGRVVLV  257 (337)
T ss_pred             HhCCCCCCEEEEC--C----CCHHHHHHHHHHHhcCCEEEEE
Confidence            0113458988875  1    1134566667778888887654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	3e-28
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	2e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	2e-04

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score =  106 bits (265), Expect = 3e-28
 Identities = 38/177 (21%), Positives = 65/177 (36%), Gaps = 20/177 (11%)

Query: 17  EVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCG 76
             L   +Q           + VW  +      L          P  + GK V ELGAG G
Sbjct: 39  APLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQ-------PELIAGKTVCELGAGAG 91

Query: 77  VAGFGMALLGCN-VITTD--QIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133
           +      L G + V+ TD    E+L  L+ N+  +T+  +  +  +    S + V   WG
Sbjct: 92  LVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTA--NSCSSETVKRASPKVVPYRWG 149

Query: 134 N---EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL-----SGPKTTILVMFS 182
           +             F  ++  D++      + LL+++  L     + P    LV F+
Sbjct: 150 DSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFT 206

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 56  GRFCPSKLKGKRVIELGAGCGVAGFGMA--LLGCNVITTD-QIEVLPLLKRNVEWNTSRI 112
                   +  R+ +LGAG G AG  +A  L    V   +   E+    +R++E      
Sbjct: 29  ASLVADD-RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLE------ 81

Query: 113 SQMNPGSDLLGSIQAVELDW--GNEDHIKAVAPP--FDYIIGT 151
             +   +     I+ +E D     +  ++A  P   F ++I  
Sbjct: 82  --LPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMN 122

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 14/98 (14%)

Query: 56  GRFCPSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTD-QIEVLPLLKRNVEWNTSRIS 113
            +F    ++  ++I+L +G G+    ++      ++  + Q  +  + KR+V +N     
Sbjct: 41  AKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN----- 95

Query: 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 151
                  L   I+ +E D      +       D +   
Sbjct: 96  ------QLEDQIEIIEYDLKKITDLIP-KERADIVTCN 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.86
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.77
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.77
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.74
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.72
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.7
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.7
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.69
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.69
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.68
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.67
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.67
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.66
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.66
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.66
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.66
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.66
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.66
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.66
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.65
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.65
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.65
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.65
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.64
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.64
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.64
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.64
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.63
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.63
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.63
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.63
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.63
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.63
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.63
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.63
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.62
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.62
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.62
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.62
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.62
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.62
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.62
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.62
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.62
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.62
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.61
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.61
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.61
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.61
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.61
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.61
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.6
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.6
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.6
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.6
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.6
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.59
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.59
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.59
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.59
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.59
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.59
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.59
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.59
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.59
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.58
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.58
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.58
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.58
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.57
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.57
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.57
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.57
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.56
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.56
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.56
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.56
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.56
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.56
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.55
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.55
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.55
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.55
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.55
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.55
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.55
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.55
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.54
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.54
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.54
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.54
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.54
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.54
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.53
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.53
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.53
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.53
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.53
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.53
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.53
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.53
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.52
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.52
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.52
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.52
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.52
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.51
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.51
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.51
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.51
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.51
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.51
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.51
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.51
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.51
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.51
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.5
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.5
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.5
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.5
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.5
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.5
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.5
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.49
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.49
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.49
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.48
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.48
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.48
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.48
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.47
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.47
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.47
3ocj_A	305	Putative exported protein; structural genomics, PS	99.47
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.47
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.47
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.47
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.47
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.46
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.46
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.46
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.46
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.46
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.46
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.45
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.45
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.44
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.44
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.44
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.44
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.44
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.44
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.44
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.44
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.44
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.44
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.43
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.43
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.43
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.43
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.43
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.42
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.42
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.42
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.42
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.42
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.41
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.41
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.41
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.41
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.41
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.41
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.41
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.4
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.4
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.4
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.4
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.39
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.39
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.39
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.39
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.39
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.38
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.38
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.38
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.38
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.38
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.37
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.37
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.37
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.37
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.37
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.37
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.36
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.36
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.36
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.35
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.35
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.34
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.34
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.33
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.32
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.31
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.3
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.29
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.29
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.28
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.28
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.28
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.27
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.27
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.27
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.26
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.26
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.25
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.25
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.25
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.24
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.24
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.23
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.23
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.22
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.22
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.21
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.21
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.21
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.21
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.21
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.2
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.2
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.2
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.19
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.18
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.18
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.17
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.17
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.16
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.16
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.14
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.14
2o07_A	304	Spermidine synthase; structural genomics, structur	99.13
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.13
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.12
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.12
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.11
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.11
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.11
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.1
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.09
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.07
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.07
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.07
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.07
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.06
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.05
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.05
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.05
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.01
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.99
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.99
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.98
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.98
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.98
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.98
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.95
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.83
3lkd_A	542	Type I restriction-modification system methyltrans	98.79
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.78
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.78
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.78
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.76
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.76
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.7
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.68
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.67
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.67
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.66
3khk_A	544	Type I restriction-modification system methylation	98.61
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.51
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.34
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.26
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.25
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.25
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.21
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.17
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.14
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.13
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.04
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.96
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.95
3ufb_A	530	Type I restriction-modification system methyltran	97.91
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.87
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.86
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.83
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.75
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.74
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.58
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.44
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.35
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.32
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.26
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.0
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.84
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.79
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	96.67
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.62
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.55
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.55
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.29
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.26
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.05
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.98
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.97
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.88
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.81
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.63
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.62
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.57
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.31
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.28
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.23
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.22
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.96
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.58
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.39
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	94.36
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.28
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.27
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.19
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.19
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.16
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.08
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.08
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.98
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	93.94
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.84
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.82
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	93.7
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	93.63
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.59
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.59
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.36
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	93.32
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.27
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.15
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	93.03
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.01
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.0
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.95
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.76
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	92.72
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	92.53
3me5_A	482	Cytosine-specific methyltransferase; structural ge	92.36
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.33
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.05
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	92.03
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.79
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.66
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	91.64
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	91.62
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	91.6
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	91.58
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	91.57
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	91.41
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.31
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	91.07
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	91.05
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	91.04
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	90.97
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	90.96
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	90.9
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	90.89
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	90.79
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	90.77
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	90.58
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	90.54
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	90.46
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	90.41
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	90.39
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	90.37
2zig_A	297	TTHA0409, putative modification methylase; methylt	90.06
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	89.96
3imf_A	257	Short chain dehydrogenase; structural genomics, in	89.96
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	89.94
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	89.93
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	89.86
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	89.78
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	89.57
1xhl_A	297	Short-chain dehydrogenase/reductase family member	89.5
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	89.38
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	89.35
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	89.32
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	89.3
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	89.19
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	89.19
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	89.19
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.01
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.01
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	88.92
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	88.84
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	88.82
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	88.8
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	88.58
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	88.58
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	88.55
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	88.43
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	88.41
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	88.4
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	88.34
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	88.28
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	88.25
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	88.16
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	88.15
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	87.86
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	87.81
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	87.81
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	87.76
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	87.73
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	87.69
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	87.67
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	87.62
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	87.59
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	87.59
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	87.55
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	87.51
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	87.47
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	87.32
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	87.3
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	87.3
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	87.18
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	87.18
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	87.14
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	87.12
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	87.12
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	87.11
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	87.06
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	87.01
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	86.81
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	86.72
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	86.71
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	86.71
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	86.7
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	86.59
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	86.56
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	86.36
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	86.34
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	86.19
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	86.18
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	86.13
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	86.12
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	86.07
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	85.97
1xkq_A	280	Short-chain reductase family member (5D234); parra	85.83
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	85.77
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	85.77
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	85.76
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	85.65
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	85.53
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	85.51
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	85.48
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	85.45
1xq1_A	266	Putative tropinone reducatse; structural genomics,	85.31
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	85.28
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	85.17
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	85.04
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	84.98
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	84.96
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	84.92
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	84.86
4dqx_A	277	Probable oxidoreductase protein; structural genomi	84.78
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	84.75
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	84.65
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	84.63
3rih_A	293	Short chain dehydrogenase or reductase; structural	84.62
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	84.48
3cxt_A	291	Dehydrogenase with different specificities; rossma	84.41
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	84.39
1id1_A	153	Putative potassium channel protein; RCK domain, E.	84.28
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	84.21
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	84.2
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	84.1
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	84.1
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	84.06
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	83.99
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	83.95
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	83.68
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	83.54
1spx_A	278	Short-chain reductase family member (5L265); paral	83.52
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	83.48
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	83.47
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	83.43
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	83.39
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	83.33
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	83.06
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	83.06
4eye_A	342	Probable oxidoreductase; structural genomics, niai	83.04
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	82.94
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	82.93
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	82.84
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	82.7

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.86  E-value=3.6e-21  Score=155.58  Aligned_cols=154  Identities=23%  Similarity=0.351  Sum_probs=108.1

Q ss_pred             EEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-c-chHH
Q 028673           23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-I-EVLP   99 (205)
Q Consensus        23 ~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~-~~l~   99 (205)
                      ..++.......+|..+|+++..|++++...       ....++++|||||||+|.+++.+++.|+ +|+++|+ + ++++
T Consensus        45 ~~~~i~g~~~~~g~~~~~~~~~l~~~l~~~-------~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~  117 (281)
T 3bzb_A           45 VQVQTTQEHPLWTSHVWSGARALADTLCWQ-------PELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILN  117 (281)
T ss_dssp             EEEECC-----------CHHHHHHHHHHHC-------GGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHH
T ss_pred             eEEEECCCCCCCCceeecHHHHHHHHHHhc-------chhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHH
Confidence            444433334567889999999999999876       3345788999999999999999999987 7999999 4 6999


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-ccc--CCCCccEEEEcccccCCcChHhHHHHHHHhhC---C
Q 028673          100 LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA--VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG---P  173 (205)
Q Consensus       100 ~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-~~~--~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~---~  173 (205)
                      .+++|+..|........  ....+++.+..++|++... ...  ...+||+|++++++|+......+++.+.++|+   |
T Consensus       118 ~a~~n~~~N~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p  195 (281)
T 3bzb_A          118 SLESNIREHTANSCSSE--TVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPAN  195 (281)
T ss_dssp             HHHHHHHTTCC------------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTT
T ss_pred             HHHHHHHHhhhhhcccc--cCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCC
Confidence            99999955521100000  0001368899999998532 211  24689999999999999999999999999999   9


Q ss_pred             --CcEEEEEEeecc
Q 028673          174 --KTTILVMFSLSM  185 (205)
Q Consensus       174 --~g~~~i~~~~r~  185 (205)
                        ||.+++++..+.
T Consensus       196 ~~gG~l~v~~~~~~  209 (281)
T 3bzb_A          196 DPTAVALVTFTHHR  209 (281)
T ss_dssp             CTTCEEEEEECC--
T ss_pred             CCCCEEEEEEEeee
Confidence              999888776544

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.77  E-value=2e-17  Score=138.90  Aligned_cols=156  Identities=19%  Similarity=0.304  Sum_probs=123.3

Q ss_pred             CCCccEEEEEEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC
Q 028673            8 SPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC   87 (205)
Q Consensus         8 ~~~~~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~   87 (205)
                      .+.+.+++..+.+..+++...++.+. +..+.+.+..+.+++.....     ....++.+|||+|||+|.+++.+++.++
T Consensus       183 ~~~w~~~~~~~~g~~~~~~~~pgvFs-~~~~d~~t~~ll~~l~~~l~-----~~~~~~~~VLDlGcG~G~~~~~la~~g~  256 (381)
T 3dmg_A          183 PSLWRAFSARILGAEYTFHHLPGVFS-AGKVDPASLLLLEALQERLG-----PEGVRGRQVLDLGAGYGALTLPLARMGA  256 (381)
T ss_dssp             CCCCEEEEEEETTEEEEEEECTTCTT-TTSCCHHHHHHHHHHHHHHC-----TTTTTTCEEEEETCTTSTTHHHHHHTTC
T ss_pred             ccccceeeEEecCceEEEEeCCCcee-CCCCCHHHHHHHHHHHHhhc-----ccCCCCCEEEEEeeeCCHHHHHHHHcCC
Confidence            56678888899999999999886543 33456678888888865411     1234678999999999999999999999


Q ss_pred             EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC-----CcChH
Q 028673           88 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-----EHLLE  161 (205)
Q Consensus        88 ~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~-----~~~~~  161 (205)
                      +|+++|+ +.+++.+++|+..|+.             .+++...|+.+..   ....+||+|++++++++     .+...
T Consensus       257 ~V~gvDis~~al~~A~~n~~~~~~-------------~v~~~~~D~~~~~---~~~~~fD~Ii~npp~~~~~~~~~~~~~  320 (381)
T 3dmg_A          257 EVVGVEDDLASVLSLQKGLEANAL-------------KAQALHSDVDEAL---TEEARFDIIVTNPPFHVGGAVILDVAQ  320 (381)
T ss_dssp             EEEEEESBHHHHHHHHHHHHHTTC-------------CCEEEECSTTTTS---CTTCCEEEEEECCCCCTTCSSCCHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCC-------------CeEEEEcchhhcc---ccCCCeEEEEECCchhhcccccHHHHH
Confidence            9999999 7899999999998854             3677776655442   22468999999988876     45567


Q ss_pred             hHHHHHHHhhCCCcEEEEEEeecc
Q 028673          162 PLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       162 ~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .+++.+.++|+|||.++++.....
T Consensus       321 ~~l~~~~~~LkpGG~l~iv~n~~l  344 (381)
T 3dmg_A          321 AFVNVAAARLRPGGVFFLVSNPFL  344 (381)
T ss_dssp             HHHHHHHHHEEEEEEEEEEECTTS
T ss_pred             HHHHHHHHhcCcCcEEEEEEcCCC
Confidence            899999999999999999876544

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.77  E-value=4.9e-18  Score=135.42  Aligned_cols=142  Identities=15%  Similarity=0.206  Sum_probs=110.5

Q ss_pred             EEEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC
Q 028673           16 LEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ   94 (205)
Q Consensus        16 ~~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~   94 (205)
                      -.+....+.+.|...++..|..    +.+|+.|+..          .+++.+|||+|||+|.+++.+++++. +|+++|+
T Consensus        15 d~~~~~~~~i~q~~~~~~~~~d----~~ll~~~~~~----------~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi   80 (259)
T 3lpm_A           15 DYLLAENLRIIQSPSVFSFSID----AVLLAKFSYL----------PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEI   80 (259)
T ss_dssp             EEETTTTEEEEEBTTTBCCCHH----HHHHHHHCCC----------CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECC
T ss_pred             ccccCCCEEEEeCCCCccCcHH----HHHHHHHhcC----------CCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEEC
Confidence            3456778999999887777755    7888888721          11478999999999999999999876 7999999


Q ss_pred             -cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC----------------
Q 028673           95 -IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----------------  157 (205)
Q Consensus        95 -~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~----------------  157 (205)
                       +++++.+++|++.|+.           .+++.+...|+.+.... ....+||+|+++++++..                
T Consensus        81 ~~~~~~~a~~n~~~~~~-----------~~~v~~~~~D~~~~~~~-~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~  148 (259)
T 3lpm_A           81 QERLADMAKRSVAYNQL-----------EDQIEIIEYDLKKITDL-IPKERADIVTCNPPYFATPDTSLKNTNEHFRIAR  148 (259)
T ss_dssp             SHHHHHHHHHHHHHTTC-----------TTTEEEECSCGGGGGGT-SCTTCEEEEEECCCC-------------------
T ss_pred             CHHHHHHHHHHHHHCCC-----------cccEEEEECcHHHhhhh-hccCCccEEEECCCCCCCccccCCCCchHHHhhh
Confidence             8899999999999854           35688888776654321 125689999999887765                


Q ss_pred             ----cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          158 ----HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       158 ----~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                          ..++.+++.+.++|+|||.++++.+.
T Consensus       149 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  178 (259)
T 3lpm_A          149 HEVMCTLEDTIRVAASLLKQGGKANFVHRP  178 (259)
T ss_dssp             ----HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             ccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence                22457999999999999999997643

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.74  E-value=9.3e-17  Score=121.33  Aligned_cols=160  Identities=19%  Similarity=0.227  Sum_probs=116.8

Q ss_pred             CCCCCCCCCCccEEEEEEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHH
Q 028673            1 MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF   80 (205)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl   80 (205)
                      |++++-.......+.-.+.+..+.+....+.+... .....+..+.+++.           ..++.+|||+|||+|..++
T Consensus         1 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-----------~~~~~~vLdiG~G~G~~~~   68 (194)
T 1dus_A            1 FSEKPTTKSDVKIVEDILRGKKLKFKTDSGVFSYG-KVDKGTKILVENVV-----------VDKDDDILDLGCGYGVIGI   68 (194)
T ss_dssp             CCCCCCSCCCEEEEEEEETTEEEEEEEETTSTTTT-SCCHHHHHHHHHCC-----------CCTTCEEEEETCTTSHHHH
T ss_pred             CCCCCCCCccccEEeeecCCCceEEEeCCCcCCcc-ccchHHHHHHHHcc-----------cCCCCeEEEeCCCCCHHHH
Confidence            44555555666677777889999887665433222 11122334444432           2267899999999999999


Q ss_pred             HHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC-Cc
Q 028673           81 GMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-EH  158 (205)
Q Consensus        81 ~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~-~~  158 (205)
                      .+++.+.+|+++|+ +++++.+++++..++..          ..++.+...|+.+..    ...+||+|+++.++++ ..
T Consensus        69 ~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~d~~~~~----~~~~~D~v~~~~~~~~~~~  134 (194)
T 1dus_A           69 ALADEVKSTTMADINRRAIKLAKENIKLNNLD----------NYDIRVVHSDLYENV----KDRKYNKIITNPPIRAGKE  134 (194)
T ss_dssp             HHGGGSSEEEEEESCHHHHHHHHHHHHHTTCT----------TSCEEEEECSTTTTC----TTSCEEEEEECCCSTTCHH
T ss_pred             HHHHcCCeEEEEECCHHHHHHHHHHHHHcCCC----------ccceEEEECchhccc----ccCCceEEEECCCcccchh
Confidence            99988889999999 88999999999887531          013888887766532    2468999999887765 45


Q ss_pred             ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          159 LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       159 ~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ....+++.+.++|+|||.+++....+..
T Consensus       135 ~~~~~l~~~~~~L~~gG~l~~~~~~~~~  162 (194)
T 1dus_A          135 VLHRIIEEGKELLKDNGEIWVVIQTKQG  162 (194)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            6778999999999999999999887644

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.72  E-value=1.5e-17  Score=139.10  Aligned_cols=104  Identities=18%  Similarity=0.249  Sum_probs=87.9

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++|++|||+|||||++|+++|+.|++ |+++|.+++++.|+++++.|+.           .++|.+...+..+.+   
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~-----------~~~i~~i~~~~~~~~---  145 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGL-----------EDRVHVLPGPVETVE---  145 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC---
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCC-----------CceEEEEeeeeeeec---
Confidence            4568999999999999999999999985 9999997789999999999965           578999986655543   


Q ss_pred             cCCCCccEEEE---cccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          140 AVAPPFDYIIG---TDVVYAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       140 ~~~~~fD~Ii~---~d~~y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                       .+++||+|++   ...+.++..++.++....++|+|||.++-
T Consensus       146 -lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          146 -LPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             -CSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             -CCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence             3468999998   45566688899999999999999998764

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.70  E-value=2e-16  Score=132.59  Aligned_cols=150  Identities=13%  Similarity=0.110  Sum_probs=108.9

Q ss_pred             cEEEEEEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEE
Q 028673           12 SVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNV   89 (205)
Q Consensus        12 ~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v   89 (205)
                      ......+.+..+++.+.++.+.. ..+..++..+.+++..           ..+.+|||+|||+|.+++.+++.  +.+|
T Consensus       182 ~~~~~~~~~~~~~~~~~pg~Fs~-~~~d~~~~~ll~~l~~-----------~~~~~VLDlGcG~G~~s~~la~~~p~~~V  249 (375)
T 4dcm_A          182 QTVSWKLEGTDWTIHNHANVFSR-TGLDIGARFFMQHLPE-----------NLEGEIVDLGCGNGVIGLTLLDKNPQAKV  249 (375)
T ss_dssp             SCEEEEETTTTEEEEECTTCTTC-SSCCHHHHHHHHTCCC-----------SCCSEEEEETCTTCHHHHHHHHHCTTCEE
T ss_pred             CceEEEecCCceEEEeCCCcccC-CcccHHHHHHHHhCcc-----------cCCCeEEEEeCcchHHHHHHHHHCCCCEE
Confidence            34566778888999998865443 2444455555555532           24579999999999999999998  5789


Q ss_pred             EEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC-----cChHhH
Q 028673           90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----HLLEPL  163 (205)
Q Consensus        90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~l  163 (205)
                      +++|+ +.+++.+++|+..|+..         ...++.+...|..+.    ....+||+|+++++++..     .....+
T Consensus       250 ~gvD~s~~al~~Ar~n~~~ngl~---------~~~~v~~~~~D~~~~----~~~~~fD~Ii~nppfh~~~~~~~~~~~~~  316 (375)
T 4dcm_A          250 VFVDESPMAVASSRLNVETNMPE---------ALDRCEFMINNALSG----VEPFRFNAVLCNPPFHQQHALTDNVAWEM  316 (375)
T ss_dssp             EEEESCHHHHHHHHHHHHHHCGG---------GGGGEEEEECSTTTT----CCTTCEEEEEECCCC-------CCHHHHH
T ss_pred             EEEECcHHHHHHHHHHHHHcCCC---------cCceEEEEechhhcc----CCCCCeeEEEECCCcccCcccCHHHHHHH
Confidence            99999 78999999999998641         012466676555442    134689999999988752     233478


Q ss_pred             HHHHHHhhCCCcEEEEEEeeccc
Q 028673          164 LQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       164 l~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ++.+.++|+|||.++++......
T Consensus       317 l~~~~~~LkpgG~l~iv~n~~~~  339 (375)
T 4dcm_A          317 FHHARRCLKINGELYIVANRHLD  339 (375)
T ss_dssp             HHHHHHHEEEEEEEEEEEETTSC
T ss_pred             HHHHHHhCCCCcEEEEEEECCcC
Confidence            99999999999999998765443

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.70  E-value=3.3e-16  Score=123.16  Aligned_cols=121  Identities=12%  Similarity=0.087  Sum_probs=99.9

Q ss_pred             ccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCC
Q 028673           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (205)
Q Consensus        38 ~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (205)
                      -|+.+..+.+.+..           .++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++..++.      
T Consensus         6 ~~~~~~~~~~~~~~-----------~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------   68 (239)
T 1xxl_A            6 HHHSLGLMIKTAEC-----------RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV------   68 (239)
T ss_dssp             CHHHHHHHHHHHTC-----------CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC------
T ss_pred             cCCCcchHHHHhCc-----------CCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------
Confidence            35566666666643           36789999999999999999999999999999 7899999999887753      


Q ss_pred             CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                            .++.+...++.+.   +..+++||+|+++.++++......+++.+.++|+|||.+++.....
T Consensus        69 ------~~v~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           69 ------ENVRFQQGTAESL---PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             ------CSEEEEECBTTBC---CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             ------CCeEEEecccccC---CCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence                  3578888766543   2335789999999999998999999999999999999999987644

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.69  E-value=7.6e-17  Score=122.41  Aligned_cols=111  Identities=16%  Similarity=0.182  Sum_probs=89.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .++.+|||+|||+|..++.+++.++ +|+++|+ +++++.+++|++.++.            +++++...|+.+... ..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~-~~  109 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL------------SGATLRRGAVAAVVA-AG  109 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC------------SCEEEEESCHHHHHH-HC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC------------CceEEEEccHHHHHh-hc
Confidence            4788999999999999998888776 6999999 7899999999998853            468888876654321 01


Q ss_pred             CCCCccEEEEcccccCC-cChHhHHHHHHH--hhCCCcEEEEEEeeccc
Q 028673          141 VAPPFDYIIGTDVVYAE-HLLEPLLQTIFA--LSGPKTTILVMFSLSMF  186 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~-~~~~~ll~~~~~--~l~~~g~~~i~~~~r~~  186 (205)
                      ...+||+|++++++++. +..+.+++.+.+  +|+|||.+++....+..
T Consensus       110 ~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~~  158 (189)
T 3p9n_A          110 TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTCA  158 (189)
T ss_dssp             CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTSC
T ss_pred             cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCCC
Confidence            24689999998775543 678899999999  99999999999886654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.69  E-value=2.6e-16  Score=124.46  Aligned_cols=107  Identities=16%  Similarity=0.060  Sum_probs=91.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++.+|||+|||+|..+..+++. +.+|+++|+ +++++.++++++.++.           .+++.+...|+.+..   
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---   99 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----------SERVHFIHNDAAGYV---   99 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCCTTCC---
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CcceEEEECChHhCC---
Confidence            346789999999999999999876 779999999 8899999999887753           346888887776543   


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      . +++||+|++..++++......+++.+.++|+|||.++++.+.
T Consensus       100 ~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A          100 A-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence            2 568999999999999888999999999999999999998764

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.68  E-value=6.5e-16  Score=123.49  Aligned_cols=108  Identities=16%  Similarity=0.225  Sum_probs=87.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh----CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+|.+|||||||||..++.+++.    |++|+++|+ ++|++.|+++++..+.           ..++++...|..+.. 
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-----------~~~v~~~~~D~~~~~-  136 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDIA-  136 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCTTTCC-
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-----------CceEEEeeccccccc-
Confidence            36789999999999999999975    568999999 7899999999876532           457888886655432 


Q ss_pred             cccCCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          138 IKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                          .++||+|+++.++++..  ....+++.+++.|+|||.++++...+..
T Consensus       137 ----~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~  183 (261)
T 4gek_A          137 ----IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE  183 (261)
T ss_dssp             ----CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCS
T ss_pred             ----ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCC
Confidence                35799999999987754  3457899999999999999999876554

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.67  E-value=1.4e-15  Score=120.75  Aligned_cols=106  Identities=12%  Similarity=0.109  Sum_probs=90.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++..++.            .++.+...|..+.   +..+
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~------------~~v~~~~~d~~~l---~~~~  101 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH------------QQVEYVQGDAEQM---PFTD  101 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCC-CC---CSCT
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC------------CceEEEEecHHhC---CCCC
Confidence            5789999999999999999999989999999 7899999999887653            3577877665543   2335


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ++||+|+++.++++..+...+++.+.++|+|||.++++....
T Consensus       102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~  143 (260)
T 1vl5_A          102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  143 (260)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence            789999999999999999999999999999999999986543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.67  E-value=4.1e-16  Score=117.69  Aligned_cols=108  Identities=16%  Similarity=0.026  Sum_probs=80.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|..++.+++.+.+|+++|+ +++++.+++|++.++.            +++++...+......  .
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~------------~~v~~~~~~~~~l~~--~   85 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI------------ENTELILDGHENLDH--Y   85 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC------------CCEEEEESCGGGGGG--T
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCcHHHHHh--h
Confidence            346789999999999999999999889999999 8899999999998753            467777643332211  1


Q ss_pred             CCCCccEEEEcccccCC---------cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .+.+||+|+++......         .....+++.+.++|+|||.++++...
T Consensus        86 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           86 VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            25689999887332221         33446788999999999999887653

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.66  E-value=1.9e-15  Score=120.66  Aligned_cols=123  Identities=12%  Similarity=0.040  Sum_probs=99.4

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCC
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (205)
                      +...+.+.+...       ....++.+|||+|||+|..+..+++. +.+|+++|+ +++++.+++++..++.        
T Consensus        45 ~~~~~~~~l~~~-------~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--------  109 (273)
T 3bus_A           45 ATDRLTDEMIAL-------LDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL--------  109 (273)
T ss_dssp             HHHHHHHHHHHH-------SCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC--------
T ss_pred             HHHHHHHHHHHh-------cCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC--------
Confidence            344555666554       23346789999999999999999875 788999999 7899999999887753        


Q ss_pred             CCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       119 ~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                         .+++.+...|..+..   ..+.+||+|+++.++++......+++.+.++|+|||.+++.....
T Consensus       110 ---~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  169 (273)
T 3bus_A          110 ---ANRVTFSYADAMDLP---FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL  169 (273)
T ss_dssp             ---TTTEEEEECCTTSCC---SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             ---CcceEEEECccccCC---CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence               346888887665532   335689999999999999999999999999999999999987654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.66  E-value=1e-15  Score=117.86  Aligned_cols=107  Identities=15%  Similarity=0.112  Sum_probs=91.2

Q ss_pred             CeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           66 KRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      .+|||+|||+|..+..+++. +.+|+++|+ +++++.++++++.++.           .+++++...|..+..   ...+
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---~~~~  110 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL-----------NDRIQIVQGDVHNIP---IEDN  110 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECBTTBCS---SCTT
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc-----------cCceEEEEcCHHHCC---CCcc
Confidence            39999999999999999987 668999999 7899999999988753           357888887766533   3357


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      +||+|+++.++++......+++.+.++|+|||.++++......
T Consensus       111 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  153 (219)
T 3dlc_A          111 YADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNK  153 (219)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSH
T ss_pred             cccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcH
Confidence            8999999999999999999999999999999999998755443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.66  E-value=5.7e-16  Score=120.80  Aligned_cols=107  Identities=22%  Similarity=0.354  Sum_probs=86.6

Q ss_pred             CCCeEEEeCCC-ccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAG-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcG-tGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+||| +|..++.+++. +.+|+++|+ +++++.+++|++.++.             ++++...|+....... 
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~v~~~~~d~~~~~~~~-  120 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-------------NVRLVKSNGGIIKGVV-  120 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-------------CCEEEECSSCSSTTTC-
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-------------CcEEEeCCchhhhhcc-
Confidence            67899999999 99999999998 889999999 7899999999998853             5788887765443222 


Q ss_pred             CCCCccEEEEcccccCCcC-------------------hHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEHL-------------------LEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~-------------------~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                       .++||+|+++++++....                   ...+++.+.++|+|||.+++..+.+.
T Consensus       121 -~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  183 (230)
T 3evz_A          121 -EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE  183 (230)
T ss_dssp             -CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH
T ss_pred             -cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH
Confidence             478999999877665332                   47889999999999999999887654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.66  E-value=1.7e-15  Score=119.81  Aligned_cols=107  Identities=12%  Similarity=0.086  Sum_probs=91.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++.+|||+|||+|..++.+++.+. +|+++|+ +.+++.+++++..++.           .+++++...|+.+..   
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---  109 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-----------ADRVKGITGSMDNLP---  109 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSCS---
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECChhhCC---
Confidence            34577999999999999999999865 8999999 7899999999988754           346888887775442   


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...++||+|+++.++++. ..+.+++.+.++|+|||.++++...
T Consensus       110 ~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          110 FQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             SCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            335789999999999988 6889999999999999999999764

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.66  E-value=4e-16  Score=120.50  Aligned_cols=105  Identities=13%  Similarity=0.086  Sum_probs=87.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++..+              .++.+...|..+..    
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~~----  110 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW--------------SHISWAATDILQFS----  110 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC--------------SSEEEEECCTTTCC----
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC--------------CCeEEEEcchhhCC----
Confidence            335679999999999999999999989999999 78999999876543              36888887766554    


Q ss_pred             CCCCccEEEEcccccCCcCh---HhHHHHHHHhhCCCcEEEEEEeec
Q 028673          141 VAPPFDYIIGTDVVYAEHLL---EPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~---~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..++||+|+++.++++....   ..+++.+.++|+|||.++++.+..
T Consensus       111 ~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          111 TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            35789999999999987766   466999999999999999987543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.66  E-value=1.7e-15  Score=122.61  Aligned_cols=109  Identities=12%  Similarity=0.050  Sum_probs=92.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .++.+|||+|||+|..+..+++. +++|+++|+ +.+++.+++++...+.           .+++.+...|+.+.   +.
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~---~~  146 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----------ADNITVKYGSFLEI---PC  146 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----------TTTEEEEECCTTSC---SS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CcceEEEEcCcccC---CC
Confidence            46789999999999999999987 889999999 7899999999887753           35688888776553   23


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .+++||+|++..++++......+++.+.++|+|||.+++..+...
T Consensus       147 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  191 (297)
T 2o57_A          147 EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE  191 (297)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             CCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            356899999999999988899999999999999999999987543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.66  E-value=6.9e-16  Score=124.23  Aligned_cols=110  Identities=22%  Similarity=0.239  Sum_probs=93.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.|.+|+++|+ +++++.+++++..++.           ..++.+...|+.+...  ...
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~~~  134 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGV-----------SDNMQFIHCAAQDVAS--HLE  134 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CC-----------GGGEEEEESCGGGTGG--GCS
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEEcCHHHhhh--hcC
Confidence            4679999999999999999999999999999 7899999999887643           2468888877765532  235


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ++||+|+++.++++......+++.+.++|+|||.+++....+..
T Consensus       135 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  178 (285)
T 4htf_A          135 TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHG  178 (285)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHH
T ss_pred             CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCch
Confidence            78999999999999999999999999999999999999876544

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.65  E-value=2.6e-15  Score=121.99  Aligned_cols=108  Identities=14%  Similarity=0.095  Sum_probs=91.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++.+|||+|||+|..++.+++. |++|+++|+ +++++.+++++..++.           .+++.+...|+.+.    
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~----  134 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----------PRRKEVRIQGWEEF----  134 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC-----------SSCEEEEECCGGGC----
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECCHHHc----
Confidence            346789999999999999999987 889999999 7899999999988743           35788888776543    


Q ss_pred             cCCCCccEEEEcccccCC---------cChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          140 AVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                        +++||+|+++.++++.         .....+++.+.++|+|||.+++.......
T Consensus       135 --~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  188 (302)
T 3hem_A          135 --DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD  188 (302)
T ss_dssp             --CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred             --CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence              5689999999999887         34479999999999999999998876543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.65  E-value=1.5e-15  Score=121.19  Aligned_cols=106  Identities=16%  Similarity=0.139  Sum_probs=82.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC--c
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--I  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~--~  138 (205)
                      ..++.+|||+|||+|..++.++++|++|+++|. ++|++.+++|+..+                  ....+|.+...  .
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~------------------~v~~~~~~~~~~~~  104 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR------------------CVTIDLLDITAEIP  104 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS------------------CCEEEECCTTSCCC
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc------------------cceeeeeecccccc
Confidence            446789999999999999999999999999999 78999999886544                  12334444332  1


Q ss_pred             ccCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          139 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ....++||+|+++.++++.  +....+++.+.++| |||.++++...-..
T Consensus       105 ~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~  153 (261)
T 3iv6_A          105 KELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFY  153 (261)
T ss_dssp             GGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCC
T ss_pred             cccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcc
Confidence            1235689999999888653  45667899999999 99999999876544

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.65  E-value=9.5e-16  Score=121.60  Aligned_cols=125  Identities=17%  Similarity=0.167  Sum_probs=98.7

Q ss_pred             ccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccC
Q 028673           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (205)
Q Consensus        38 ~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (205)
                      .++.+..+++.+...       ....++.+|||+|||+|..+..+++. +++|+++|+ +++++.+++++..+       
T Consensus        36 ~~~~~~~~~~~~~~~-------~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------  101 (266)
T 3ujc_A           36 ISSGGLEATKKILSD-------IELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-------  101 (266)
T ss_dssp             CSTTHHHHHHHHTTT-------CCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-------
T ss_pred             cccchHHHHHHHHHh-------cCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-------
Confidence            445555666666554       23446789999999999999999987 889999999 77888888765432       


Q ss_pred             CCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       116 ~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                             .++.+...|..+.   +...++||+|+++.++++.  .....+++.+.++|+|||.+++.......
T Consensus       102 -------~~~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  164 (266)
T 3ujc_A          102 -------NKIIFEANDILTK---EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE  164 (266)
T ss_dssp             -------TTEEEEECCTTTC---CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred             -------CCeEEEECccccC---CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence                   3678888776654   2335789999999999998  88899999999999999999999875544

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.65  E-value=3.6e-15  Score=121.76  Aligned_cols=110  Identities=7%  Similarity=-0.087  Sum_probs=93.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++.+|||+|||+|..++.+++. +++|+++|+ +++++.++++++.++.           .+++++...|..+..   
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---  180 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI-----------DDHVRSRVCNMLDTP---  180 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSCC---
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCceEEEECChhcCC---
Confidence            346789999999999999999987 899999999 8899999999998854           347888887765432   


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ...++||+|++++++++.. ...+++.+.++|+|||.++++......
T Consensus       181 ~~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~  226 (312)
T 3vc1_A          181 FDKGAVTASWNNESTMYVD-LHDLFSEHSRFLKVGGRYVTITGCWNP  226 (312)
T ss_dssp             CCTTCEEEEEEESCGGGSC-HHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             CCCCCEeEEEECCchhhCC-HHHHHHHHHHHcCCCcEEEEEEccccc
Confidence            3357999999999998884 899999999999999999998765443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.64  E-value=1.8e-15  Score=116.95  Aligned_cols=105  Identities=12%  Similarity=0.079  Sum_probs=90.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+|||+|||+|..+..+++.+   .+|+++|. +++++.+++++..++.            .++.+...|..+..   
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~---  101 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------------KNVEVLKSEENKIP---  101 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEECBTTBCS---
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEecccccCC---
Confidence            57899999999999999999886   68999999 7899999999988753            36888887765432   


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ....+||+|+++.++++......+++.+.++|+|||.++++...
T Consensus       102 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          102 LPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             SCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEec
Confidence            33568999999999999989999999999999999999998654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.64  E-value=2e-15  Score=114.72  Aligned_cols=103  Identities=18%  Similarity=0.250  Sum_probs=87.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +.+++.+++++..++.            .++.+...|..+..   . .
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~---~-~   95 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENL------------DNLHTRVVDLNNLT---F-D   95 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEECCGGGCC---C-C
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCC------------CCcEEEEcchhhCC---C-C
Confidence            5679999999999999999999999999999 7899999999887743            35788886665543   2 5


Q ss_pred             CCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          143 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .+||+|+++.++++..  ....+++.+.++|+|||.+++...
T Consensus        96 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           96 RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             CCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            6899999999998765  788999999999999999887654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.64  E-value=3.8e-16  Score=124.70  Aligned_cols=122  Identities=18%  Similarity=0.236  Sum_probs=94.1

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHH---hhhhhcc
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEW---NTSRISQ  114 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~---n~~~~~~  114 (205)
                      .+++|+.|+...           ++.+|||+|||+|.+++.+++++  .+|+++|+ +++++.+++|+..   |+.    
T Consensus        24 D~~lL~~~~~~~-----------~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l----   88 (260)
T 2ozv_A           24 DAMLLASLVADD-----------RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF----   88 (260)
T ss_dssp             HHHHHHHTCCCC-----------SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT----
T ss_pred             HHHHHHHHhccc-----------CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC----
Confidence            478888877422           56799999999999999999885  57999999 8899999999987   643    


Q ss_pred             CCCCCCCCCceEEEEeecCCCCCc----ccCCCCccEEEEcccccCC------------------cChHhHHHHHHHhhC
Q 028673          115 MNPGSDLLGSIQAVELDWGNEDHI----KAVAPPFDYIIGTDVVYAE------------------HLLEPLLQTIFALSG  172 (205)
Q Consensus       115 ~~~~~~~~~~i~~~~~dw~~~~~~----~~~~~~fD~Ii~~d~~y~~------------------~~~~~ll~~~~~~l~  172 (205)
                             .+++.+...|+.+....    .....+||+|+++++++..                  ..++.+++.+.++|+
T Consensus        89 -------~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk  161 (260)
T 2ozv_A           89 -------SARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMV  161 (260)
T ss_dssp             -------GGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEE
T ss_pred             -------cceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcC
Confidence                   34688988777665210    1124689999999877654                  236789999999999


Q ss_pred             CCcEEEEEEeec
Q 028673          173 PKTTILVMFSLS  184 (205)
Q Consensus       173 ~~g~~~i~~~~r  184 (205)
                      |||.+++..+..
T Consensus       162 pgG~l~~~~~~~  173 (260)
T 2ozv_A          162 SGGQLSLISRPQ  173 (260)
T ss_dssp             EEEEEEEEECGG
T ss_pred             CCCEEEEEEcHH
Confidence            999999987644

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.64  E-value=5.9e-15  Score=118.79  Aligned_cols=107  Identities=14%  Similarity=0.180  Sum_probs=89.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHH-HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++.+|||+|||+|..+..++ +.|.+|+++|+ +++++.+++++...+.           ..++.+...|+.+.    
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~----  126 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----------LRSKRVLLAGWEQF----  126 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----------CSCEEEEESCGGGC----
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhC----
Confidence            3467899999999999999998 56889999999 7899999998876532           34678888666432    


Q ss_pred             cCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          140 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                        +++||+|++..++++.  .....+++.+.++|+|||.+++......
T Consensus       127 --~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          127 --DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             --CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             --CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence              2689999999999887  6789999999999999999999887654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.63  E-value=3.5e-15  Score=119.01  Aligned_cols=107  Identities=13%  Similarity=0.056  Sum_probs=91.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++.+|||+|||+|..++.+++.+. +|+++|+ +.+++.++++++.++.           .+++++...|+.+..   
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---  109 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL-----------QNRVTGIVGSMDDLP---  109 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSCC---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CcCcEEEEcChhhCC---
Confidence            34678999999999999999998855 8999999 7899999999988754           356899997776543   


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...++||+|+++.++++. ....+++.+.++|+|||.+++....
T Consensus       110 ~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          110 FRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             CCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            235789999999999988 7899999999999999999998764

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.63  E-value=1.5e-14  Score=110.79  Aligned_cols=106  Identities=12%  Similarity=0.060  Sum_probs=87.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..++.+|||+|||+|..++.+++.+  .+|+++|+ +++++.+++|++.++.            +++++...|+.+..  
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~--  103 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA------------RNVTLVEAFAPEGL--  103 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC------------TTEEEEECCTTTTC--
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEeCChhhhh--
Confidence            3367899999999999999999987  68999999 8899999999988853            46888886664332  


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                       ...++||+|+++.+.+   ....+++.+.++|+|||.+++......
T Consensus       104 -~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~  146 (204)
T 3e05_A          104 -DDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD  146 (204)
T ss_dssp             -TTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH
T ss_pred             -hcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc
Confidence             1235799999987665   788999999999999999999866543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.63  E-value=1.9e-15  Score=118.47  Aligned_cols=105  Identities=13%  Similarity=0.091  Sum_probs=88.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.|++|+++|+ +.+++.++++..               ..++.+...|..+..   ...
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~~---~~~  114 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE---------------GPDLSFIKGDLSSLP---FEN  114 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTC---------------BTTEEEEECBTTBCS---SCT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcc---------------cCCceEEEcchhcCC---CCC
Confidence            5789999999999999999999999999999 778888887631               236788887766542   335


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      .+||+|+++.++++......+++.+.++|+|||.++++......
T Consensus       115 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  158 (242)
T 3l8d_A          115 EQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTA  158 (242)
T ss_dssp             TCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTC
T ss_pred             CCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcc
Confidence            78999999999999999999999999999999999999865443

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.63  E-value=4e-15  Score=115.43  Aligned_cols=104  Identities=17%  Similarity=0.267  Sum_probs=87.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++..++             .++++...|..+..   ...
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~~---~~~  101 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-------------SNVEFIVGDARKLS---FED  101 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCCEEEECCTTSCC---SCT
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEECchhcCC---CCC
Confidence            3779999999999999999999999999999 789999999988763             36788887665432   234


Q ss_pred             CCccEEEEccc--ccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTDV--VYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d~--~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ++||+|+++++  +++......+++.+.++|+|||.+++..+.
T Consensus       102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            68999999999  565667789999999999999999998764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.63  E-value=3.7e-15  Score=119.22  Aligned_cols=119  Identities=21%  Similarity=0.186  Sum_probs=96.6

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (205)
                      ...+.+++...       ....++.+|||+|||+|..+..+++.  +.+|+++|. +.+++.+++++..++.        
T Consensus        22 ~~~l~~~l~~~-------~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------   86 (276)
T 3mgg_A           22 AETLEKLLHHD-------TVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI--------   86 (276)
T ss_dssp             -CHHHHHHHTT-------CCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC--------
T ss_pred             HHHHHHHHhhc-------ccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------
Confidence            34566666543       23346789999999999999999988  568999999 7899999999888753        


Q ss_pred             CCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       119 ~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                          .++.+...|..+.   +...++||+|+++.++++....+.+++.+.++|+|||.+++..+
T Consensus        87 ----~~~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A           87 ----KNVKFLQANIFSL---PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             ----CSEEEEECCGGGC---CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----CCcEEEEcccccC---CCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence                3578877666543   23357899999999999999999999999999999999999865

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.63  E-value=4.8e-16  Score=117.16  Aligned_cols=129  Identities=13%  Similarity=0.150  Sum_probs=95.2

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (205)
                      +.+..+.+.+....      ....++.+|||+|||+|..++.+++.+. +|+++|+ +++++.+++|+..++.       
T Consensus        26 p~~~~~~~~~~~~l------~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------   92 (187)
T 2fhp_A           26 PTTDKVKESIFNMI------GPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-------   92 (187)
T ss_dssp             CCCHHHHHHHHHHH------CSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-------
T ss_pred             cCHHHHHHHHHHHH------HhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-------
Confidence            33455555554432      1234678999999999999998888874 7999999 7899999999998853       


Q ss_pred             CCCCCCceEEEEeecCCCCC-cccCCCCccEEEEcccccCCcChHhHHHHH--HHhhCCCcEEEEEEeeccc
Q 028673          118 GSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTI--FALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       118 ~~~~~~~i~~~~~dw~~~~~-~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~--~~~l~~~g~~~i~~~~r~~  186 (205)
                          .+++++...|+.+... ......+||+|+++.+ |+....+..++.+  .++|+|||.+++..+.+..
T Consensus        93 ----~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  159 (187)
T 2fhp_A           93 ----PEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVK  159 (187)
T ss_dssp             ----GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             ----CcceEEEECcHHHHHHHHHhcCCCCCEEEECCC-CCchhHHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence                2468888876654211 1111468999999877 5566778888888  6779999999998876544

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.63  E-value=3e-15  Score=120.52  Aligned_cols=103  Identities=18%  Similarity=0.300  Sum_probs=87.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..++.+++.|.+|+++|+ +.+++.+++++..++.             ++.+...|..+..   . .
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~---~-~  182 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL-------------NISTALYDINAAN---I-Q  182 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CEEEEECCGGGCC---C-C
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEecccccc---c-c
Confidence            6789999999999999999999999999999 7899999999988742             5788886665543   1 5


Q ss_pred             CCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ++||+|+++.++++.  .....+++.+.++|+|||.+++....
T Consensus       183 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  225 (286)
T 3m70_A          183 ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAM  225 (286)
T ss_dssp             SCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            789999999999865  55679999999999999998887653

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.63  E-value=1.3e-15  Score=119.17  Aligned_cols=104  Identities=16%  Similarity=0.105  Sum_probs=87.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +.+++.+++++..++.           ..++.+...|+.+..    ..
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~----~~  130 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPK-----------AEYFSFVKEDVFTWR----PT  130 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGG-----------GGGEEEECCCTTTCC----CS
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCC-----------CcceEEEECchhcCC----CC
Confidence            4569999999999999999998999999999 7899999998876432           246888887776643    24


Q ss_pred             CCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          143 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .+||+|+++.++++..  ....+++.+.++|+|||.+++...
T Consensus       131 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          131 ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence            5899999999998866  888999999999999999988754

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.62  E-value=5.9e-15  Score=114.10  Aligned_cols=103  Identities=17%  Similarity=0.101  Sum_probs=85.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++.                .++.+...|..+..   .. 
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----------------~~~~~~~~d~~~~~---~~-  104 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP----------------KEFSITEGDFLSFE---VP-  104 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC----------------TTCCEESCCSSSCC---CC-
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC----------------CceEEEeCChhhcC---CC-
Confidence            5789999999999999999999999999999 778888887654                14667775555432   22 


Q ss_pred             CCccEEEEcccccCCcChHh--HHHHHHHhhCCCcEEEEEEeeccc
Q 028673          143 PPFDYIIGTDVVYAEHLLEP--LLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~--ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ++||+|+++.++++....+.  +++.+.++|+|||.+++..+....
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  150 (220)
T 3hnr_A          105 TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFAD  150 (220)
T ss_dssp             SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSS
T ss_pred             CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccC
Confidence            78999999999998877766  999999999999999999765443

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.62  E-value=1.4e-14  Score=111.46  Aligned_cols=104  Identities=16%  Similarity=0.166  Sum_probs=83.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++.+|||+|||+|..++.+++.+.+|+++|+ +++++.+++|++.++.           .+++++...|..+.   ...
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~---~~~  119 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGL-----------SPRMRAVQGTAPAA---LAD  119 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCTTGG---GTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCCEEEEeCchhhh---ccc
Confidence            36789999999999999999999889999999 8899999999998864           23688888655442   112


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .++||+|+++..+    ..+ +++.+.++|+|||.+++......
T Consensus       120 ~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~  158 (204)
T 3njr_A          120 LPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLE  158 (204)
T ss_dssp             SCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHH
T ss_pred             CCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcc
Confidence            3579999987633    455 99999999999999999876543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.62  E-value=3.8e-15  Score=118.46  Aligned_cols=135  Identities=21%  Similarity=0.268  Sum_probs=98.9

Q ss_pred             EEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHH
Q 028673           22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPL  100 (205)
Q Consensus        22 ~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~  100 (205)
                      .+.+.-+++ ..+|...++.+....+++...         ..++.+|||+|||+|.+++.+++.|++|+++|+ +.+++.
T Consensus        88 ~~~~~l~p~-~~fgtg~~~tt~~~~~~l~~~---------~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~  157 (254)
T 2nxc_A           88 EIPLVIEPG-MAFGTGHHETTRLALKALARH---------LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQ  157 (254)
T ss_dssp             SEEEECCCC------CCSHHHHHHHHHHHHH---------CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHH
T ss_pred             ceEEEECCC-ccccCCCCHHHHHHHHHHHHh---------cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHH
Confidence            344554553 344555567777777777653         235789999999999999999999999999999 889999


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       101 ~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      +++|+..|+.            . +++...++.+.  .  ...+||+|+++.+.   +....+++.+.++|+|||.++++
T Consensus       158 a~~n~~~~~~------------~-v~~~~~d~~~~--~--~~~~fD~Vv~n~~~---~~~~~~l~~~~~~LkpgG~lils  217 (254)
T 2nxc_A          158 AEANAKRNGV------------R-PRFLEGSLEAA--L--PFGPFDLLVANLYA---ELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             HHHHHHHTTC------------C-CEEEESCHHHH--G--GGCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHcCC------------c-EEEEECChhhc--C--cCCCCCEEEECCcH---HHHHHHHHHHHHHcCCCCEEEEE
Confidence            9999998854            1 56666554432  1  24589999997432   34678999999999999999998


Q ss_pred             Eeeccc
Q 028673          181 FSLSMF  186 (205)
Q Consensus       181 ~~~r~~  186 (205)
                      ......
T Consensus       218 ~~~~~~  223 (254)
T 2nxc_A          218 GILKDR  223 (254)
T ss_dssp             EEEGGG
T ss_pred             eeccCC
Confidence            765544

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.62  E-value=1.3e-15  Score=117.11  Aligned_cols=128  Identities=14%  Similarity=-0.011  Sum_probs=86.2

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (205)
                      ...|.+++..-        ...++.+|||+|||+|..+..+++.|.+|+++|+ ++|++.++++...........+....
T Consensus         8 ~~~l~~~~~~l--------~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~   79 (203)
T 1pjz_A            8 NKDLQQYWSSL--------NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY   79 (203)
T ss_dssp             THHHHHHHHHH--------CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEE
T ss_pred             CHHHHHHHHhc--------ccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccc
Confidence            34566666542        1236789999999999999999999999999999 78999998765421000000000000


Q ss_pred             CCCceEEEEeecCCCCCcccCC-CCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEE
Q 028673          121 LLGSIQAVELDWGNEDHIKAVA-PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       121 ~~~~i~~~~~dw~~~~~~~~~~-~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ...++++...|..+..   ... ++||+|++..++++..  ....+++.+.++|+|||.+++.
T Consensus        80 ~~~~v~~~~~d~~~l~---~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           80 AAPGIEIWCGDFFALT---ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             ECSSSEEEEECCSSST---HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cCCccEEEECccccCC---cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            0246788887665543   222 5899999988876643  3456899999999999984444

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.62  E-value=1.1e-14  Score=118.97  Aligned_cols=108  Identities=17%  Similarity=0.165  Sum_probs=90.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++.+|||+|||+|..+..+++. |++|+++|+ +++++.+++++..++.           .+++.+...|+.+.    
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~----  152 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----------NRSRQVLLQGWEDF----  152 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCGGGC----
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChHHC----
Confidence            346789999999999999999987 899999999 7899999998887643           34678877665433    


Q ss_pred             cCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          140 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                        +++||+|+++.++++.  .....+++.+.++|+|||.+++.......
T Consensus       153 --~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          153 --AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH  199 (318)
T ss_dssp             --CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             --CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence              2689999999999886  67899999999999999999999876554

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.62  E-value=6e-15  Score=114.06  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=84.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|..+..+++.+  .+|+++|+ +++++.+++++..++....       ...++.+...|....   ..
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~~---~~   98 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN-------QWERLQLIQGALTYQ---DK   98 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHH-------HHTTEEEEECCTTSC---CG
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcc-------cCcceEEEeCCcccc---cc
Confidence            57899999999999999999876  48999999 7899999999876542100       012678888665332   22


Q ss_pred             CCCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..++||+|+++.++++...  ...+++.+.++|+|||.++++..
T Consensus        99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A           99 RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            3468999999999998764  47999999999999996666544

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.62  E-value=1.9e-15  Score=119.46  Aligned_cols=104  Identities=13%  Similarity=0.147  Sum_probs=87.9

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++++|||+|||+|..+..+++.+. +|+++|+ +++++.+++++..               .++.+...|..+.   +
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------~~~~~~~~d~~~~---~  103 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS---------------PVVCYEQKAIEDI---A  103 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCC---------------TTEEEEECCGGGC---C
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhcc---------------CCeEEEEcchhhC---C
Confidence            34688999999999999999999988 8999999 7899988876541               3578888666543   2


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...++||+|+++.++++......+++.+.++|+|||.++++.+.
T Consensus       104 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          104 IEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            33578999999999999999999999999999999999998653

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.62  E-value=4.2e-15  Score=115.63  Aligned_cols=114  Identities=12%  Similarity=0.163  Sum_probs=91.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +.+++.+++++..++...       ....++.+...+....   ....
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~d~~~~---~~~~   99 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQ-------KTGGKAEFKVENASSL---SFHD   99 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCS-------SSSCEEEEEECCTTSC---CSCT
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCcc-------ccCcceEEEEeccccc---CCCC
Confidence            5789999999999999999999999999999 789999998877654210       1123567777655543   2335


Q ss_pred             CCccEEEEcccccCCcChH---hHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          143 PPFDYIIGTDVVYAEHLLE---PLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~---~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      .+||+|+++.++++....+   .+++.+.++|+|||.++++...+...
T Consensus       100 ~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  147 (235)
T 3sm3_A          100 SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWH  147 (235)
T ss_dssp             TCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTT
T ss_pred             CceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchh
Confidence            7899999999999887777   89999999999999999997765443

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.62  E-value=5.1e-15  Score=113.50  Aligned_cols=134  Identities=18%  Similarity=0.188  Sum_probs=99.0

Q ss_pred             EEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHH
Q 028673           23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL  100 (205)
Q Consensus        23 ~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~  100 (205)
                      ..+..+++ ..++...++....+.+++...         ..++.+|||+|||+|..++.+++.+. +|+++|+ +++++.
T Consensus        29 ~~~~~~~~-~~f~~~~~~~~~~~~~~l~~~---------~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~   98 (205)
T 3grz_A           29 EIIRLDPG-LAFGTGNHQTTQLAMLGIERA---------MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTA   98 (205)
T ss_dssp             EEEEESCC------CCHHHHHHHHHHHHHH---------CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             eeEEecCC-cccCCCCCccHHHHHHHHHHh---------ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            34444442 223334456677777777654         22578999999999999999999876 7999999 789999


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       101 ~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      +++|+..++.            .++++...|+.+..     .++||+|+++.++.   ....+++.+.++|+|||.++++
T Consensus        99 a~~~~~~~~~------------~~v~~~~~d~~~~~-----~~~fD~i~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~  158 (205)
T 3grz_A           99 AEENAALNGI------------YDIALQKTSLLADV-----DGKFDLIVANILAE---ILLDLIPQLDSHLNEDGQVIFS  158 (205)
T ss_dssp             HHHHHHHTTC------------CCCEEEESSTTTTC-----CSCEEEEEEESCHH---HHHHHGGGSGGGEEEEEEEEEE
T ss_pred             HHHHHHHcCC------------CceEEEeccccccC-----CCCceEEEECCcHH---HHHHHHHHHHHhcCCCCEEEEE
Confidence            9999998854            23788887765432     46899999986553   3578888999999999999998


Q ss_pred             Eeeccc
Q 028673          181 FSLSMF  186 (205)
Q Consensus       181 ~~~r~~  186 (205)
                      ...+..
T Consensus       159 ~~~~~~  164 (205)
T 3grz_A          159 GIDYLQ  164 (205)
T ss_dssp             EEEGGG
T ss_pred             ecCccc
Confidence            665543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.62  E-value=2.1e-15  Score=120.32  Aligned_cols=111  Identities=13%  Similarity=0.095  Sum_probs=85.9

Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCC
Q 028673           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL  122 (205)
Q Consensus        44 ~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~  122 (205)
                      .|.++|....         ..+.+|||||||+|..+..++..+.+|+++|. ++|++.+++                  .
T Consensus        28 ~l~~~l~~~~---------~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~------------------~   80 (257)
T 4hg2_A           28 ALFRWLGEVA---------PARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR------------------H   80 (257)
T ss_dssp             HHHHHHHHHS---------SCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC------------------C
T ss_pred             HHHHHHHHhc---------CCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh------------------c
Confidence            4567776542         13568999999999999999999999999999 678765542                  1


Q ss_pred             CceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          123 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       123 ~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .++.+...+..+   .+..+++||+|+++.++++. ..+.+++.+.++|||||.+.+......
T Consensus        81 ~~v~~~~~~~e~---~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A           81 PRVTYAVAPAED---TGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             TTEEEEECCTTC---CCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             CCceeehhhhhh---hcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            357887755443   34456799999999999776 478899999999999999877765433

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.61  E-value=1.4e-15  Score=116.91  Aligned_cols=108  Identities=14%  Similarity=0.082  Sum_probs=86.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..++.+++.++ +|+++|+ +++++.+++|++.++.            .++++...|+.+..  ...
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~------------~~v~~~~~D~~~~~--~~~  119 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------------GNARVVNSNAMSFL--AQK  119 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCHHHHH--SSC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHHH--hhc
Confidence            578999999999999998888775 7999999 7899999999998853            36778776654321  113


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHH--hhCCCcEEEEEEeeccc
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILVMFSLSMF  186 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~i~~~~r~~  186 (205)
                      ..+||+|+++.+ |+....+.+++.+.+  +|+|||.++++......
T Consensus       120 ~~~fD~V~~~~p-~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~  165 (202)
T 2fpo_A          120 GTPHNIVFVDPP-FRRGLLEETINLLEDNGWLADEALIYVESEVENG  165 (202)
T ss_dssp             CCCEEEEEECCS-SSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC
T ss_pred             CCCCCEEEECCC-CCCCcHHHHHHHHHhcCccCCCcEEEEEECCCcc
Confidence            468999999777 667788888988876  49999999998876543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.61  E-value=7.1e-15  Score=113.74  Aligned_cols=109  Identities=17%  Similarity=0.118  Sum_probs=84.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|..+..+++.+  .+|+++|+ +++++.+++++..++....       ...++++...|+...   ..
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~~---~~   98 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM-------QRKRISLFQSSLVYR---DK   98 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHH-------HHTTEEEEECCSSSC---CG
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccc-------cCcceEEEeCccccc---cc
Confidence            57899999999999999999886  58999999 7899999999877643100       012678888666332   23


Q ss_pred             CCCCccEEEEcccccCCcCh--HhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ...+||+|++++++++....  ..+++.+.++|+|||.++.+..
T Consensus        99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  142 (219)
T 3jwg_A           99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN  142 (219)
T ss_dssp             GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence            35689999999999987644  6899999999999996555443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.61  E-value=1.3e-15  Score=116.97  Aligned_cols=110  Identities=16%  Similarity=0.115  Sum_probs=85.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..++.++..++ +|+++|+ +++++.+++|++.++..          .+++++...|..+.... ..
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------~~~v~~~~~d~~~~~~~-~~  121 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----------SEQAEVINQSSLDFLKQ-PQ  121 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----------TTTEEEECSCHHHHTTS-CC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC----------ccceEEEECCHHHHHHh-hc
Confidence            578999999999999998887775 7999999 78999999999988530          13677777655432111 11


Q ss_pred             CCC-ccEEEEcccccCCcChHhHHHHH--HHhhCCCcEEEEEEeecc
Q 028673          142 APP-FDYIIGTDVVYAEHLLEPLLQTI--FALSGPKTTILVMFSLSM  185 (205)
Q Consensus       142 ~~~-fD~Ii~~d~~y~~~~~~~ll~~~--~~~l~~~g~~~i~~~~r~  185 (205)
                      ..+ ||+|+++++ |+....+.+++.+  .++|+|||.++++...+.
T Consensus       122 ~~~~fD~I~~~~~-~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          122 NQPHFDVVFLDPP-FHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             SSCCEEEEEECCC-SSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             cCCCCCEEEECCC-CCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            457 999999877 6667778888888  457999999999988765

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.61  E-value=8.7e-16  Score=120.40  Aligned_cols=103  Identities=13%  Similarity=0.086  Sum_probs=86.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++..                ++.+...+..+.    ..+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~----------------~v~~~~~d~~~~----~~~  101 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD----------------GITYIHSRFEDA----QLP  101 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS----------------CEEEEESCGGGC----CCS
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC----------------CeEEEEccHHHc----CcC
Confidence            6778999999999999999999999999999 7788888876432                367777655443    235


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHH-HhhCCCcEEEEEEeeccc
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIF-ALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~-~~l~~~g~~~i~~~~r~~  186 (205)
                      ++||+|+++.++++..+...+++.+. ++|+|||.++++.+.+..
T Consensus       102 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~  146 (250)
T 2p7i_A          102 RRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANA  146 (250)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred             CcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHH
Confidence            68999999999999989999999999 999999999999876543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.61  E-value=6.5e-16  Score=114.69  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=85.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-CcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~~  141 (205)
                      ++++|||+|||+|..++.+++.+.+|+++|+ +++++.+++|+..++.             ++++...|+.+.. .....
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~~~~~~~  107 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL-------------GARVVALPVEVFLPEAKAQ  107 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC-------------CCEEECSCHHHHHHHHHHT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC-------------ceEEEeccHHHHHHhhhcc
Confidence            5789999999999999999999999999999 7899999999988742             5677776655421 11111


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHH--HhhCCCcEEEEEEeeccc
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIF--ALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~--~~l~~~g~~~i~~~~r~~  186 (205)
                      ..+||+|+++.+++  ...+.+++.+.  ++|+|||.++++...+..
T Consensus       108 ~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          108 GERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             TCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             CCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            34799999987754  66677888887  899999999998876554

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.61  E-value=2.2e-14  Score=118.37  Aligned_cols=111  Identities=20%  Similarity=0.153  Sum_probs=85.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCC-ceEEEEeecCCCCCc-cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG-SIQAVELDWGNEDHI-KA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~-~i~~~~~dw~~~~~~-~~  140 (205)
                      ++.+|||+|||+|..++.+++.|++|+++|+ +.+++.+++|++.|+.           .+ ++.+...|..+.... ..
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl-----------~~~~v~~i~~D~~~~l~~~~~  221 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGL-----------EQAPIRWICEDAMKFIQREER  221 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTC-----------TTSCEEEECSCHHHHHHHHHH
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC-----------CccceEEEECcHHHHHHHHHh
Confidence            4679999999999999999999999999999 7899999999999864           22 377777554432110 00


Q ss_pred             CCCCccEEEEcccccCCc----------ChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEH----------LLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~----------~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ...+||+|+++++.|...          ....+++.+.++|+|||.+++......
T Consensus       222 ~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~  276 (332)
T 2igt_A          222 RGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI  276 (332)
T ss_dssp             HTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred             cCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence            145899999987755422          356889999999999999877765443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=1.2e-14  Score=108.70  Aligned_cols=118  Identities=12%  Similarity=-0.001  Sum_probs=91.7

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (205)
                      .....+.+++....       ...++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|++.++.        
T Consensus        18 ~~~~~~~~~~~~~~-------~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------   82 (183)
T 2yxd_A           18 ITKEEIRAVSIGKL-------NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI--------   82 (183)
T ss_dssp             CCCHHHHHHHHHHH-------CCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC--------
T ss_pred             cCHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC--------
Confidence            33445555555541       2346789999999999999999997778999999 7899999999988753        


Q ss_pred             CCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       119 ~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                          +++.+...|+.+.  .  ..++||+|+++.+    .....+++.+.++  |||.+++.......
T Consensus        83 ----~~~~~~~~d~~~~--~--~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~~  136 (183)
T 2yxd_A           83 ----KNCQIIKGRAEDV--L--DKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLEN  136 (183)
T ss_dssp             ----CSEEEEESCHHHH--G--GGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHHH
T ss_pred             ----CcEEEEECCcccc--c--cCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccccc
Confidence                3578888766542  1  2368999999987    7788999999988  99999998865443

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.60  E-value=6.6e-15  Score=123.45  Aligned_cols=107  Identities=17%  Similarity=0.230  Sum_probs=88.9

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ...++++|||+|||+|.+++.+++.|+ +|+++|.+++++.++++++.|+.           .+++++...+..+..   
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---  125 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNL-----------DHIVEVIEGSVEDIS---  125 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTC-----------TTTEEEEESCGGGCC---
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCC-----------CCeEEEEECchhhcC---
Confidence            456789999999999999999999988 79999998899999999999864           456899887765543   


Q ss_pred             cCCCCccEEEEcccccC---CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~---~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      . .++||+|++..+.|.   ....+.+++.+.++|+|||.+++...
T Consensus       126 ~-~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C          126 L-PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             C-SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             c-CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            1 268999999765555   36688899999999999999977643

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.60  E-value=9.7e-15  Score=120.87  Aligned_cols=103  Identities=20%  Similarity=0.232  Sum_probs=84.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++++|||+|||+|.+++.+++.|+ +|+++|.+++++.++++++.|+.           .+++.+...+..+.   ..
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~~---~~  127 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKL-----------EDTITLIKGKIEEV---HL  127 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTS---CC
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCC-----------CCcEEEEEeeHHHh---cC
Confidence            45788999999999999999999987 79999995599999999998853           35788888666543   22


Q ss_pred             CCCCccEEEEccc---ccCCcChHhHHHHHHHhhCCCcEEE
Q 028673          141 VAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       141 ~~~~fD~Ii~~d~---~y~~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                      ..++||+|+++.+   +.+....+.+++.+.++|+|||.++
T Consensus       128 ~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          128 PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            3468999999874   4445667889999999999999987

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.60  E-value=1.7e-15  Score=122.18  Aligned_cols=114  Identities=16%  Similarity=0.135  Sum_probs=88.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..++.++..|++|+++|+ +++++.+++++.......        ...++.+...++.+........
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~  128 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEP--------AFDKWVIEEANWLTLDKDVPAG  128 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSH--------HHHTCEEEECCGGGHHHHSCCT
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhccccc--------ccceeeEeecChhhCccccccC
Confidence            5689999999999999999999999999999 789999998875432110        0124667776554431000235


Q ss_pred             CCccEEEEc-ccccCCcC-------hHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          143 PPFDYIIGT-DVVYAEHL-------LEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       143 ~~fD~Ii~~-d~~y~~~~-------~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ++||+|++. .++++...       ...+++.+.++|+|||.+++..+...
T Consensus       129 ~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  179 (293)
T 3thr_A          129 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD  179 (293)
T ss_dssp             TCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             CCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHH
Confidence            789999998 88888777       88999999999999999999877543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.60  E-value=5.5e-15  Score=113.74  Aligned_cols=100  Identities=19%  Similarity=0.262  Sum_probs=82.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++  +                +.+...+..+..    ..
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~--~----------------~~~~~~d~~~~~----~~  100 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL--G----------------RPVRTMLFHQLD----AI  100 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--T----------------SCCEECCGGGCC----CC
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc--C----------------CceEEeeeccCC----CC
Confidence            5789999999999999999999999999999 78999988876  2                234444443332    46


Q ss_pred             CCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          143 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ++||+|+++.++++..  ....+++.+.++|+|||.++++.+...
T Consensus       101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  145 (211)
T 3e23_A          101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGE  145 (211)
T ss_dssp             SCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred             CcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence            7899999999998876  778999999999999999999976543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.59  E-value=1.2e-14  Score=108.49  Aligned_cols=106  Identities=11%  Similarity=-0.020  Sum_probs=82.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .++.+|||+|||+|..++.+++.  +.+|+++|+ +++++.+++|++.++.           ..++ +...+..+  ..+
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~-~~~~d~~~--~~~   89 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV-----------SDRI-AVQQGAPR--AFD   89 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC-----------TTSE-EEECCTTG--GGG
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC-----------CCCE-EEecchHh--hhh
Confidence            35779999999999999999987  567999999 7899999999988753           2356 55544332  222


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ...++||+|+++.++++    ..+++.+.++|+|||.+++.......
T Consensus        90 ~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~~  132 (178)
T 3hm2_A           90 DVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVES  132 (178)
T ss_dssp             GCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHHH
T ss_pred             ccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecccc
Confidence            22368999999988876    78999999999999999988765433

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.59  E-value=5.5e-15  Score=115.78  Aligned_cols=102  Identities=17%  Similarity=0.130  Sum_probs=85.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..+..+++.+. +|+++|+ +++++.++++...+               ++.+...|..+..   ..
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------~~~~~~~d~~~~~---~~  104 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT---------------GITYERADLDKLH---LP  104 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS---------------SEEEEECCGGGCC---CC
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC---------------CceEEEcChhhcc---CC
Confidence            678999999999999999999998 8999999 77888888764322               4677776655432   23


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ..+||+|+++.++++......+++.+.++|+|||.++++.+.
T Consensus       105 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          105 QDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence            568999999999999889999999999999999999998754

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.59  E-value=1.9e-15  Score=112.47  Aligned_cols=99  Identities=10%  Similarity=0.090  Sum_probs=83.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.++++   .              +++.+...+      .....
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~--------------~~v~~~~~d------~~~~~   73 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK---F--------------DSVITLSDP------KEIPD   73 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH---C--------------TTSEEESSG------GGSCT
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh---C--------------CCcEEEeCC------CCCCC
Confidence            5679999999999999999998879999999 7788888877   1              246776655      22235


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ++||+|+++.++++......+++.+.+.|+|||.+++....+.
T Consensus        74 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           74 NSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             TCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             CceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            6899999999999999999999999999999999999976544

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.59  E-value=1.1e-14  Score=111.31  Aligned_cols=105  Identities=19%  Similarity=0.190  Sum_probs=84.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++ +|||+|||+|..+..+++.|.+|+++|. +++++.+++++..++.             ++.+...|..+.   ....
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~---~~~~   92 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV-------------KITTVQSNLADF---DIVA   92 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC-------------CEEEECCBTTTB---SCCT
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC-------------ceEEEEcChhhc---CCCc
Confidence            45 9999999999999999999999999999 7899999999887642             567777665543   2235


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ++||+|+++.+.+.......+++.+.++|+|||.+++....+.
T Consensus        93 ~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A           93 DAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             TTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             CCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            6899999975444345678899999999999999999976543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.59  E-value=7.4e-15  Score=112.25  Aligned_cols=101  Identities=12%  Similarity=0.075  Sum_probs=84.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      +.+|||+|||+|..+..+++.|.+|+++|+ +++++.++++.                 .++.+...|+.+.   +...+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~---~~~~~  101 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH-----------------PSVTFHHGTITDL---SDSPK  101 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC-----------------TTSEEECCCGGGG---GGSCC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-----------------CCCeEEeCccccc---ccCCC
Confidence            789999999999999999999999999999 78888888761                 2467777665443   23457


Q ss_pred             CccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          144 PFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      +||+|+++.++++..  ....+++.+.++|+|||.++++.....
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  145 (203)
T 3h2b_A          102 RWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGP  145 (203)
T ss_dssp             CEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred             CeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            999999999998865  889999999999999999999986543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.59  E-value=1.1e-14  Score=117.37  Aligned_cols=105  Identities=16%  Similarity=0.155  Sum_probs=89.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++.+|||+|||+|..++.+++.   +++|+++|+ +.+++.+++++..++             .++.+...|..+.. 
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------------~~v~~~~~d~~~~~-   85 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------------YDSEFLEGDATEIE-   85 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-------------SEEEEEESCTTTCC-
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEEcchhhcC-
Confidence            346789999999999999999987   578999999 789999999887652             26788887766532 


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                        . .++||+|+++.++++....+.+++.+.++|+|||.+++..+.
T Consensus        86 --~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           86 --L-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             --C-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             --c-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence              2 458999999999999999999999999999999999988765

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.59  E-value=8.4e-15  Score=116.44  Aligned_cols=114  Identities=16%  Similarity=0.044  Sum_probs=79.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhh--hhccCCCC---CCCCCceEEEEeecCCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS--RISQMNPG---SDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~--~~~~~~~~---~~~~~~i~~~~~dw~~~~~  137 (205)
                      ++.+|||+|||+|..+..+++.|.+|+++|+ +.|++.++++......  .+......   .....++++...|..+.. 
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~-  146 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP-  146 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG-
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC-
Confidence            5789999999999999999999999999999 7899988764321000  00000000   001246788886655432 


Q ss_pred             cccC-CCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEE
Q 028673          138 IKAV-APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       138 ~~~~-~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                        .. .++||+|++..++++.  .....+++.+.++|+|||.+++.
T Consensus       147 --~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          147 --RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             --GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             --cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence              22 2689999998877664  34567899999999999998643

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.59  E-value=1.8e-15  Score=122.63  Aligned_cols=122  Identities=16%  Similarity=0.265  Sum_probs=87.2

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccC---------------------
Q 028673           60 PSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---------------------  115 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---------------------  115 (205)
                      +..+++++|||+|||+|..++.+++.  +.+|+++|+ +.+++.+++++..++......                     
T Consensus        42 ~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (292)
T 3g07_A           42 PEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVR  121 (292)
T ss_dssp             GGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-------------------------------
T ss_pred             hhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence            34557899999999999999999987  568999999 789999999876653210000                     


Q ss_pred             -------------------------CCCCCCCCceEEEEeecCCCCC--cccCCCCccEEEEcccccCCc------ChHh
Q 028673          116 -------------------------NPGSDLLGSIQAVELDWGNEDH--IKAVAPPFDYIIGTDVVYAEH------LLEP  162 (205)
Q Consensus       116 -------------------------~~~~~~~~~i~~~~~dw~~~~~--~~~~~~~fD~Ii~~d~~y~~~------~~~~  162 (205)
                                               ........++.+...|+.....  .....++||+|++..++.+.+      ....
T Consensus       122 ~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~  201 (292)
T 3g07_A          122 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKR  201 (292)
T ss_dssp             --------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence                                     0000112578999988765431  112357899999999885443      6778


Q ss_pred             HHHHHHHhhCCCcEEEEEE
Q 028673          163 LLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       163 ll~~~~~~l~~~g~~~i~~  181 (205)
                      +++.+.++|+|||.+++..
T Consensus       202 ~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          202 MFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCcEEEEec
Confidence            9999999999999999864

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.59  E-value=9e-15  Score=121.47  Aligned_cols=105  Identities=19%  Similarity=0.185  Sum_probs=87.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++++|||+|||+|.+++.+++.|+ +|+++|.+++++.++++++.|+.           .+++++...++.+..   .
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---~  129 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL-----------DHVVTIIKGKVEEVE---L  129 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC---C
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCC-----------CCcEEEEECcHHHcc---C
Confidence            44788999999999999999999987 79999996699999999998864           356899997776652   2


Q ss_pred             CCCCccEEEEcccc---cCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          141 VAPPFDYIIGTDVV---YAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~---y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ..++||+|+++.+.   .+....+.+++.+.++|+|||.++..
T Consensus       130 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          130 PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            35789999997654   34578889999999999999998644

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.58  E-value=7.1e-15  Score=112.66  Aligned_cols=105  Identities=11%  Similarity=0.053  Sum_probs=85.0

Q ss_pred             CCCeEEEeCCCccHHH-HHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAG-FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~s-l~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..+ ..++..+.+|+++|. +++++.+++++..++             .++.+...|..+.   +..
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~---~~~   86 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN-------------FKLNISKGDIRKL---PFK   86 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT-------------CCCCEEECCTTSC---CSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEECchhhC---CCC
Confidence            5689999999999874 455667889999999 789999999987763             2567777665543   233


Q ss_pred             CCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .++||+|+++.++++.  .....+++.+.++|+|||.+++....+
T Consensus        87 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           87 DESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             TTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             CCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            5689999999999886  677899999999999999999987654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.58  E-value=1.2e-15  Score=114.33  Aligned_cols=111  Identities=13%  Similarity=0.232  Sum_probs=86.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++++|||+|||+|..++.+++.+. +|+++|+ +++++.+++|++.++.           .+++.+...|+.+..  .
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~--~   95 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----------ENRFTLLKMEAERAI--D   95 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----------GGGEEEECSCHHHHH--H
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECcHHHhH--H
Confidence            34678999999999999999998864 7999999 7899999999988753           246788776655421  1


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHH--HhhCCCcEEEEEEeeccc
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIF--ALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~--~~l~~~g~~~i~~~~r~~  186 (205)
                      ....+||+|+++.+ |+....+.+++.+.  ++|+|||.+++....+..
T Consensus        96 ~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  143 (177)
T 2esr_A           96 CLTGRFDLVFLDPP-YAKETIVATIEALAAKNLLSEQVMVVCETDKTVL  143 (177)
T ss_dssp             HBCSCEEEEEECCS-SHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             hhcCCCCEEEECCC-CCcchHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence            22457999999765 43455677788887  889999999999876654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.58  E-value=1.4e-14  Score=121.69  Aligned_cols=119  Identities=17%  Similarity=0.169  Sum_probs=93.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhh-ccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRI-SQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~-~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|+ +++++.+++|++.+.... ..     ....++.+...|+.+..
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~-----~~~~~v~~~~~d~~~l~  155 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS-----PSRSNVRFLKGFIENLA  155 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSS-----TTCCCEEEEESCTTCGG
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccc-----cCCCceEEEEccHHHhh
Confidence            446789999999999999999875   458999999 789999999988763210 00     00146888887776642


Q ss_pred             Cc---ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          137 HI---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       137 ~~---~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..   ....++||+|+++.++++......+++.+.++|+|||.++++.....
T Consensus       156 ~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  207 (383)
T 4fsd_A          156 TAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYAD  207 (383)
T ss_dssp             GCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             hcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccc
Confidence            22   33457899999999999988999999999999999999999876544

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.58  E-value=8.3e-15  Score=116.06  Aligned_cols=106  Identities=15%  Similarity=0.148  Sum_probs=88.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++++ .+.            ..++.+...|+.+..   ..
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~------------~~~~~~~~~d~~~~~---~~  101 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGV------------DRKVQVVQADARAIP---LP  101 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTS------------CTTEEEEESCTTSCC---SC
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hcc------------CCceEEEEcccccCC---CC
Confidence            35789999999999999999999999999999 78999999887 221            246888887765432   33


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      +++||+|+++.++++......+++.+.++|+|||.+++....+
T Consensus       102 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (263)
T 2yqz_A          102 DESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQA  144 (263)
T ss_dssp             TTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEecCC
Confidence            5689999999999998889999999999999999999985544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.57  E-value=1.2e-14  Score=117.11  Aligned_cols=102  Identities=17%  Similarity=0.176  Sum_probs=84.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..++.+++.|+. |+++|+ +++++.+++|++.|+.           .+++++...|..+...    
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~-----------~~~v~~~~~D~~~~~~----  189 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFPG----  189 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCCC----
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEECCHHHhcc----
Confidence            4789999999999999999999885 999999 8899999999999965           3457888866655432    


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..+||+|+++.+    .....+++.+.++|+|||.+++.....
T Consensus       190 ~~~fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          190 ENIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             CSCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cCCccEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence            568999999644    234678889999999999999987764

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.57  E-value=1.5e-14  Score=112.86  Aligned_cols=107  Identities=13%  Similarity=0.155  Sum_probs=87.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|+ +++++.+++++..+              .++.+...|..+..  
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~~--  105 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN--------------LKVKYIEADYSKYD--  105 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC--------------TTEEEEESCTTTCC--
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC--------------CCEEEEeCchhccC--
Confidence            346789999999999999999988  678999999 78999998876544              25788886665543  


Q ss_pred             ccCCCCccEEEEcccccCCcChH--hHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~--~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                       . .++||+|+++.++++....+  .+++.+.++|+|||.++++...+..
T Consensus       106 -~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  153 (234)
T 3dtn_A          106 -F-EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGE  153 (234)
T ss_dssp             -C-CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred             -C-CCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence             2 26899999999998876554  5999999999999999999876544

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.57  E-value=1.8e-14  Score=110.85  Aligned_cols=101  Identities=15%  Similarity=0.111  Sum_probs=84.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++    ++            ..++.+...|..+.    ...
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~------------~~~~~~~~~d~~~~----~~~  105 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HG------------LDNVEFRQQDLFDW----TPD  105 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GC------------CTTEEEEECCTTSC----CCS
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cC------------CCCeEEEecccccC----CCC
Confidence            5679999999999999999999999999999 778888876    22            13678888766554    235


Q ss_pred             CCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          143 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ++||+|+++.++++...  ...+++.+.++|+|||.++++...+
T Consensus       106 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          106 RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            78999999999988766  4789999999999999999997755

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.7e-14  Score=116.95  Aligned_cols=105  Identities=15%  Similarity=0.113  Sum_probs=86.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHH---hCCEEEEEcC-cchHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGMAL---LGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~---~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++.+|||+|||+|..+..+++   .+.+|+++|+ +.+++.++++++.+ +.           ..++++...|+.+....
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----------~~~v~~~~~d~~~~~~~  104 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-----------YKNVSFKISSSDDFKFL  104 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C-----------CTTEEEEECCTTCCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----------CCceEEEEcCHHhCCcc
Confidence            678999999999999999995   4678999999 78999999998875 11           35788988777664311


Q ss_pred             c---cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          139 K---AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       139 ~---~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .   ...++||+|+++.++++. ....+++.+.++|+|||.+++.
T Consensus       105 ~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          105 GADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             CTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence            1   012689999999999999 9999999999999999999883

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.56  E-value=1.5e-14  Score=113.72  Aligned_cols=109  Identities=15%  Similarity=-0.036  Sum_probs=86.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+ +.+++.+++++..               .++.+...|..+......
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~---------------~~~~~~~~d~~~~~~~~~  118 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTA---------------ANISYRLLDGLVPEQAAQ  118 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCC---------------TTEEEEECCTTCHHHHHH
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcc---------------cCceEEECcccccccccc
Confidence            346789999999999999999999999999999 7899999887521               257888866665321110


Q ss_pred             --CCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 --VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 --~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                        ...+||+|+++.++++..  ....+++.+.++|+|||.++++.....
T Consensus       119 ~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  167 (245)
T 3ggd_A          119 IHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG  167 (245)
T ss_dssp             HHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred             cccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence              113599999999999877  788999999999999999888876543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.56  E-value=1.4e-14  Score=113.45  Aligned_cols=103  Identities=13%  Similarity=0.006  Sum_probs=85.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++..++.             ++.+...|..+..   . .
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~---~-~   99 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-------------KPRLACQDISNLN---I-N   99 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-------------CCEEECCCGGGCC---C-S
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC-------------CeEEEecccccCC---c-c
Confidence            6789999999999999999999999999999 7899999998876632             4677776555432   2 2


Q ss_pred             CCccEEEEcc-cccCC---cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTD-VVYAE---HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d-~~y~~---~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ++||+|+++. ++++.   .....+++.+.++|+|||.+++..+.
T Consensus       100 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (246)
T 1y8c_A          100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            6899999997 98876   66788999999999999999987654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.56  E-value=9e-15  Score=115.11  Aligned_cols=104  Identities=13%  Similarity=0.139  Sum_probs=82.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+.+|||+|||+|.+++.+++.  +.+|+++|. +++++.+++|++.++.            .++++...+..+......
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~~~~  137 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------------ENTTFCHDRAETFGQRKD  137 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEESCHHHHTTCTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCEEEEeccHHHhccccc
Confidence            5789999999999999999954  678999999 7899999999998853            357888766543221011


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ..++||+|++..    ......+++.+.++|+|||.+++....
T Consensus       138 ~~~~fD~V~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~  176 (240)
T 1xdz_A          138 VRESYDIVTARA----VARLSVLSELCLPLVKKNGLFVALKAA  176 (240)
T ss_dssp             TTTCEEEEEEEC----CSCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred             ccCCccEEEEec----cCCHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            146899999975    256889999999999999999887543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.56  E-value=2.7e-14  Score=117.66  Aligned_cols=103  Identities=23%  Similarity=0.255  Sum_probs=84.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++++|||+|||+|.+++.+++.|+ +|+++|.+++++.++++++.|+.           .+++++...+..+..   ..
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~~~---~~  102 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGF-----------SDKITLLRGKLEDVH---LP  102 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTSC---CS
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCC-----------CCCEEEEECchhhcc---CC
Confidence            3678999999999999999999987 79999996699999999998854           456888886665442   22


Q ss_pred             CCCccEEEEccccc---CCcChHhHHHHHHHhhCCCcEEEE
Q 028673          142 APPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y---~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      .++||+|++..+.|   +....+.++..+.++|+|||.++.
T Consensus       103 ~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             CCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            46899999986544   466788899999999999999873

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.56  E-value=5.2e-14  Score=111.25  Aligned_cols=101  Identities=12%  Similarity=-0.028  Sum_probs=85.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .++.+|||+|||+|..+..+++.  +.+|+++|+ +++++.++++   .              .++.+...|..+..   
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~---~--------------~~~~~~~~d~~~~~---   91 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---L--------------PNTNFGKADLATWK---   91 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH---S--------------TTSEEEECCTTTCC---
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C--------------CCcEEEECChhhcC---
Confidence            35779999999999999999988  788999999 7899988876   1              24677776665432   


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                       ...+||+|+++.++++......+++.+.++|+|||.++++.+..
T Consensus        92 -~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           92 -PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             -CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             -ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence             35689999999999999899999999999999999999998644

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.56  E-value=4.7e-14  Score=108.41  Aligned_cols=101  Identities=17%  Similarity=0.098  Sum_probs=82.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++|+..++.            .++++...|+.+..   .
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~---~  139 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDL------------HNVSTRHGDGWQGW---Q  139 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGCC---G
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC------------CceEEEECCcccCC---c
Confidence            346789999999999999999999999999999 8899999999988753            36788886665432   2


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...+||+|+++.++.+...      .+.++|+|||.+++..+.
T Consensus       140 ~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          140 ARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred             cCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence            2468999999977765432      578899999999998875

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.55  E-value=9.9e-15  Score=112.84  Aligned_cols=102  Identities=17%  Similarity=0.197  Sum_probs=81.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc-cC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~-~~  141 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +.+++.++++   .               ++.+...+..+..... ..
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~---------------~~~~~~~~~~~~~~~~~~~  113 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA---G---------------AGEVHLASYAQLAEAKVPV  113 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT---C---------------SSCEEECCHHHHHTTCSCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh---c---------------ccccchhhHHhhccccccc
Confidence            5689999999999999999999999999999 7788888876   1               2345554444331111 22


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..+||+|+++.+++ ......+++.+.++|+|||.++++...+
T Consensus       114 ~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~  155 (227)
T 3e8s_A          114 GKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHP  155 (227)
T ss_dssp             CCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence            44699999999999 7888999999999999999999987643

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.55  E-value=9e-15  Score=116.06  Aligned_cols=104  Identities=14%  Similarity=0.165  Sum_probs=82.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..+.+|||+|||+|.+++.++..  +.+|+++|. +.+++.+++|++.++.            .++++...++.+.....
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l------------~~v~~~~~d~~~~~~~~  146 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL------------KGARALWGRAEVLAREA  146 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEECCHHHHTTST
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------------CceEEEECcHHHhhccc
Confidence            35789999999999999999987  568999999 7899999999998864            35888886665432111


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ....+||+|++..+    ..++.+++.+.++|+|||.+++...
T Consensus       147 ~~~~~fD~I~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          147 GHREAYARAVARAV----APLCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             TTTTCEEEEEEESS----CCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             ccCCCceEEEECCc----CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            12468999999642    4678999999999999999887654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.55  E-value=1.5e-14  Score=115.10  Aligned_cols=99  Identities=18%  Similarity=0.104  Sum_probs=81.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++.+|||+|||+|..+..+++.+++|+++|+ +.+++.++.+.                  ++.+...|+.+.   +..
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------------------~~~~~~~d~~~~---~~~   91 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP------------------QVEWFTGYAENL---ALP   91 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT------------------TEEEECCCTTSC---CSC
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc------------------CCEEEECchhhC---CCC
Confidence            36789999999999999999999999999999 66776555432                  467777666543   233


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .++||+|+++.++++......+++.+.++|+ ||.+++....
T Consensus        92 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           92 DKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             TTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             CCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence            5789999999999999999999999999999 9987777654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.55  E-value=9.4e-14  Score=107.28  Aligned_cols=107  Identities=18%  Similarity=0.034  Sum_probs=84.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+.+|||+|||+|..++.+++.  +.+|+++|+ +++++.+++|+..++.            .++.+...|+.+.... .
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~------------~~v~~~~~d~~~~~~~-~  107 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------------PNIKLLWVDGSDLTDY-F  107 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------------SSEEEEECCSSCGGGT-S
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC------------CCEEEEeCCHHHHHhh-c
Confidence            4679999999999999999988  468999999 7899999999988753            4688888777653211 2


Q ss_pred             CCCCccEEEEcccccCCc--------ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ..++||+|+++.+..+..        ..+.+++.+.++|+|||.+++....
T Consensus       108 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  158 (214)
T 1yzh_A          108 EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN  158 (214)
T ss_dssp             CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence            256899999985432211        2368999999999999999998654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.55  E-value=1.6e-14  Score=113.46  Aligned_cols=106  Identities=15%  Similarity=0.023  Sum_probs=85.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..+..+++.+ .+|+++|+ +.+++.+++++..++.            .++.+...++.+..   ..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~---~~  143 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------------RVRNYFCCGLQDFT---PE  143 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG------------GEEEEEECCGGGCC---CC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC------------ceEEEEEcChhhcC---CC
Confidence            47899999999999999988875 47999999 7899999998776531            25677776654432   23


Q ss_pred             CCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .++||+|+++.++++...  ...+++.+.++|+|||.++++....
T Consensus       144 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          144 PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             CCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence            458999999999988765  4589999999999999999987643

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.55  E-value=2e-14  Score=111.63  Aligned_cols=111  Identities=17%  Similarity=0.130  Sum_probs=81.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~  138 (205)
                      ++++|||+|||+|..++.+++.   +++|+++|+ +++++.+++|++.++.           .+++++...|..+.. ..
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~l~~~  126 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL-----------QDKVTILNGASQDLIPQL  126 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHGGGT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC-----------CCceEEEECCHHHHHHHH
Confidence            5689999999999999999984   678999999 8899999999998854           346888886654321 11


Q ss_pred             c--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          139 K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       139 ~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      .  ....+||+|++.....+......+++.+ ++|+|||.+++.......
T Consensus       127 ~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~  175 (221)
T 3u81_A          127 KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPG  175 (221)
T ss_dssp             TTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCC
T ss_pred             HHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcc
Confidence            1  0126899999875443322333456666 899999999887665433

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.55  E-value=3.3e-14  Score=112.13  Aligned_cols=103  Identities=20%  Similarity=0.276  Sum_probs=82.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..++.+++.|.+|+++|+ +++++.+++++..++.             ++.+...|..+..    ..
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~~----~~  103 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-------------KIEFLQGDVLEIA----FK  103 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEESCGGGCC----CC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC-------------ceEEEECChhhcc----cC
Confidence            5679999999999999999999999999999 7899999999877642             5777776665432    23


Q ss_pred             CCccEEEEcc-cc--cCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTD-VV--YAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d-~~--y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .+||+|++.. .+  +.......+++.+.++|+|||.+++..+.
T Consensus       104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            5899999752 22  22345678999999999999999987653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.55  E-value=3.5e-14  Score=113.97  Aligned_cols=121  Identities=17%  Similarity=0.259  Sum_probs=92.4

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (205)
                      +.+..+.+++....       . .++.+|||+|||+|.+++.+++.  +.+|+++|+ +++++.+++|++.++.      
T Consensus        93 ~~te~l~~~~l~~~-------~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~------  158 (276)
T 2b3t_A           93 PDTECLVEQALARL-------P-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------  158 (276)
T ss_dssp             TTHHHHHHHHHHHS-------C-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------
T ss_pred             chHHHHHHHHHHhc-------c-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------
Confidence            34666777776541       1 35679999999999999999976  568999999 7899999999998853      


Q ss_pred             CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC-------------------------cChHhHHHHHHHhh
Q 028673          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-------------------------HLLEPLLQTIFALS  171 (205)
Q Consensus       117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~-------------------------~~~~~ll~~~~~~l  171 (205)
                            .++.+...|+.+..    ..++||+|++++++...                         .....+++.+.++|
T Consensus       159 ------~~v~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~L  228 (276)
T 2b3t_A          159 ------KNIHILQSDWFSAL----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL  228 (276)
T ss_dssp             ------CSEEEECCSTTGGG----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGE
T ss_pred             ------CceEEEEcchhhhc----ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhc
Confidence                  35788887765431    24689999998665432                         23467888899999


Q ss_pred             CCCcEEEEEEeec
Q 028673          172 GPKTTILVMFSLS  184 (205)
Q Consensus       172 ~~~g~~~i~~~~r  184 (205)
                      +|||.+++.....
T Consensus       229 kpgG~l~~~~~~~  241 (276)
T 2b3t_A          229 VSGGFLLLEHGWQ  241 (276)
T ss_dssp             EEEEEEEEECCSS
T ss_pred             CCCCEEEEEECch
Confidence            9999999986543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.54  E-value=9.7e-14  Score=110.82  Aligned_cols=110  Identities=13%  Similarity=0.028  Sum_probs=87.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cc------hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEee-
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IE------VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD-  131 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~------~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~d-  131 (205)
                      .++.+|||+|||+|..+..+++. |  .+|+++|+ ++      +++.++++++.++.           .+++++...| 
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~  110 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----------GDRLTVHFNTN  110 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----------GGGEEEECSCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----------CCceEEEECCh
Confidence            36789999999999999999987 4  68999999 65      89999999887643           2467887765 


Q ss_pred             cCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          132 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       132 w~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      +... ..+...++||+|+++.++++......+++.+..+++|||.+++.....
T Consensus       111 ~~~~-~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          111 LSDD-LGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             TTTC-CGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             hhhc-cCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            2221 122235789999999999998888888888888999999999987544

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.54  E-value=2.9e-14  Score=110.29  Aligned_cols=105  Identities=16%  Similarity=0.134  Sum_probs=74.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||||..+..+++..  .+|+++|+ +.+++.+.++++..              .++.+...|.........
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--------------~~v~~~~~d~~~~~~~~~  122 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--------------NNIIPLLFDASKPWKYSG  122 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--------------SSEEEECSCTTCGGGTTT
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--------------CCeEEEEcCCCCchhhcc
Confidence            57899999999999999998874  58999999 77877666655432              245555544433211111


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..++||+|+++  +........+++.+.++|+|||.++++.+.+
T Consensus       123 ~~~~fD~V~~~--~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~  164 (210)
T 1nt2_A          123 IVEKVDLIYQD--IAQKNQIEILKANAEFFLKEKGEVVIMVKAR  164 (210)
T ss_dssp             TCCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             cccceeEEEEe--ccChhHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            23689999987  2233334456899999999999999996543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.54  E-value=3.1e-14  Score=114.28  Aligned_cols=101  Identities=18%  Similarity=0.206  Sum_probs=85.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++.                 .++.+...|..+..   . .
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~---~-~  115 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY-----------------PHLHFDVADARNFR---V-D  115 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------------TTSCEEECCTTTCC---C-S
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-----------------CCCEEEECChhhCC---c-C
Confidence            5779999999999999999998899999999 78998888754                 13567776655432   2 4


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ++||+|+++.++++....+.+++.+.++|+|||.+++..+.+.
T Consensus       116 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~  158 (279)
T 3ccf_A          116 KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG  158 (279)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence            6899999999999988999999999999999999999887553

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.54  E-value=2.3e-15  Score=120.15  Aligned_cols=121  Identities=15%  Similarity=0.179  Sum_probs=82.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhc---------cCCCCCC--------CC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRIS---------QMNPGSD--------LL  122 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~---------~~~~~~~--------~~  122 (205)
                      ..++.+|||||||+|+.++.++..|+. |+++|+ +.|++.++++++.+.....         ......+        ..
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            457789999999999998888888874 999999 7899999988765421000         0000000        00


Q ss_pred             CceE-EEEeecCCCCCcc-cCCCCccEEEEcccccCC----cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          123 GSIQ-AVELDWGNEDHIK-AVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       123 ~~i~-~~~~dw~~~~~~~-~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .++. +...|..+..... ...++||+|+++.++++.    ..+..+++.+.++|||||.++++..
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            1233 6665555432111 124589999999988752    3456888999999999999999964

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.54  E-value=4.4e-14  Score=118.78  Aligned_cols=116  Identities=16%  Similarity=0.077  Sum_probs=88.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCC-ceEEEEeecCCCC-Ccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG-SIQAVELDWGNED-HIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~-~i~~~~~dw~~~~-~~~  139 (205)
                      ++++|||+|||||.+++.+|+.|+ +|+++|+ +++++.+++|++.|+.           .+ ++++...|..+.. ...
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~-----------~~~~v~~~~~D~~~~l~~~~  280 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL-----------DMANHQLVVMDVFDYFKYAR  280 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTC-----------CCTTEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CccceEEEECCHHHHHHHHH
Confidence            578999999999999999999887 7999999 8899999999999964           22 6788886654321 111


Q ss_pred             cCCCCccEEEEcccccCC---------cChHhHHHHHHHhhCCCcEEEEEEeeccchhHH
Q 028673          140 AVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILVMFSLSMFSLTF  190 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~~  190 (205)
                      ....+||+|++.++.+..         ..+..+++.+.++|+|||.++++...+....+.
T Consensus       281 ~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~  340 (385)
T 2b78_A          281 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQ  340 (385)
T ss_dssp             HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHH
T ss_pred             HhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHH
Confidence            124589999997776521         123456777789999999999998877765543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.54  E-value=5.4e-14  Score=116.72  Aligned_cols=105  Identities=16%  Similarity=0.183  Sum_probs=84.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++++|||+|||+|.+++.+++.|+ +|+++|.+++++.++++++.|+.           .+++++...++.+..    
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l-----------~~~v~~~~~d~~~~~----  112 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNL-----------TDRIVVIPGKVEEVS----  112 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC----
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcchhhCC----
Confidence            44788999999999999999999876 79999996588999999988853           357888887766542    


Q ss_pred             CCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEE
Q 028673          141 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .+++||+|++..+.++.  +.....+..+.++|+|||.+++..
T Consensus       113 ~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          113 LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             CSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             CCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            23589999999887753  345567777889999999998664

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.53  E-value=4.2e-15  Score=117.86  Aligned_cols=121  Identities=17%  Similarity=0.209  Sum_probs=86.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhh---------ccCCCCCC--------CC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRI---------SQMNPGSD--------LL  122 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~---------~~~~~~~~--------~~  122 (205)
                      ..++++|||+|||+|..++.+++.+. +|+++|+ +.+++.+++++..+....         ........        ..
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            34678999999999999999999988 7999999 789999988875442000         00000000        00


Q ss_pred             Cce-EEEEeecCCCCCcc-cCCCCccEEEEccccc----CCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          123 GSI-QAVELDWGNEDHIK-AVAPPFDYIIGTDVVY----AEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       123 ~~i-~~~~~dw~~~~~~~-~~~~~fD~Ii~~d~~y----~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .++ .+...|..+..... ...++||+|+++.+++    +......+++.+.++|+|||.+++...
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence            126 77776666543211 1126899999999998    555778999999999999999999864

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.53  E-value=2.8e-14  Score=113.45  Aligned_cols=96  Identities=15%  Similarity=0.085  Sum_probs=80.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++.                 ++.+...|..+..   . .
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-----------------~~~~~~~d~~~~~---~-~  108 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP-----------------DAVLHHGDMRDFS---L-G  108 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCTTTCC---C-S
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----------------CCEEEECChHHCC---c-c
Confidence            4679999999999999999999999999999 789998887632                 3677776665543   2 5


Q ss_pred             CCccEEEEcc-cccCC---cChHhHHHHHHHhhCCCcEEEEE
Q 028673          143 PPFDYIIGTD-VVYAE---HLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       143 ~~fD~Ii~~d-~~y~~---~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .+||+|+++. ++++.   .....+++.+.++|+|||.+++.
T Consensus       109 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          109 RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             CCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            7899999997 88776   36668899999999999999996

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.53  E-value=2.9e-14  Score=118.10  Aligned_cols=104  Identities=14%  Similarity=0.153  Sum_probs=82.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+.+|||+|||+|.+++.+++.+  .+|+++|+ +.+++.+++|+..++.             .+.+...|..+.     
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------------~~~~~~~d~~~~-----  257 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-------------EGEVFASNVFSE-----  257 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-------------CCEEEECSTTTT-----
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-------------CCEEEEcccccc-----
Confidence            35689999999999999999987  47999999 7799999999988853             244555443322     


Q ss_pred             CCCCccEEEEcccccC-----CcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~-----~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..++||+|++++++++     ......+++.+.++|+|||.++++.+...
T Consensus       258 ~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  307 (343)
T 2pjd_A          258 VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL  307 (343)
T ss_dssp             CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred             ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence            2568999999988764     23467899999999999999999877543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.53  E-value=2.9e-14  Score=114.92  Aligned_cols=109  Identities=14%  Similarity=0.041  Sum_probs=87.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..+..+++.+. +|+++|+ +++++.+++++..++.           ..++.+...|..+...  ..
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~~  130 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----------RFKVFFRAQDSYGRHM--DL  130 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----------SSEEEEEESCTTTSCC--CC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CccEEEEECCcccccc--CC
Confidence            578999999999999999888876 8999999 7899999998876532           2467888866655421  13


Q ss_pred             CCCccEEEEcccccC----CcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          142 APPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .++||+|+++.++++    ......+++.+.++|+|||.+++..+.+.
T Consensus       131 ~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  178 (298)
T 1ri5_A          131 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD  178 (298)
T ss_dssp             SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             CCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            568999999998865    45567899999999999999999987643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.53  E-value=3.4e-14  Score=109.21  Aligned_cols=101  Identities=15%  Similarity=0.099  Sum_probs=83.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..+..+   +. +|+++|. +++++.++++.  .               ++.+...+..+.   +..
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~--~---------------~~~~~~~d~~~~---~~~   92 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA--P---------------EATWVRAWGEAL---PFP   92 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC--T---------------TSEEECCCTTSC---CSC
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC--C---------------CcEEEEcccccC---CCC
Confidence            6789999999999988877   77 8999999 78998888765  1               356666555433   233


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      +++||+|+++.++++......+++.+.++|+|||.++++.+.+...
T Consensus        93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~  138 (211)
T 2gs9_A           93 GESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSP  138 (211)
T ss_dssp             SSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTSH
T ss_pred             CCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcCc
Confidence            5689999999999999899999999999999999999998876543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.53  E-value=8.6e-14  Score=109.21  Aligned_cols=102  Identities=16%  Similarity=0.057  Sum_probs=80.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++.+|||+|||+|..+..+++.|.+|+++|+ +++++.++++                    +.+...+..+.. .+..
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--------------------~~~~~~d~~~~~-~~~~   98 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--------------------FNVVKSDAIEYL-KSLP   98 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--------------------SEEECSCHHHHH-HTSC
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--------------------cceeeccHHHHh-hhcC
Confidence            35689999999999999999999999999999 7788877764                    234443322210 0123


Q ss_pred             CCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          142 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      +++||+|+++.++++..  ....+++.+.++|+|||.+++..+...
T Consensus        99 ~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  144 (240)
T 3dli_A           99 DKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPT  144 (240)
T ss_dssp             TTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred             CCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            57899999999999877  558999999999999999999887644

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.53  E-value=7.5e-14  Score=110.51  Aligned_cols=108  Identities=18%  Similarity=0.109  Sum_probs=84.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++++|||+|||+|..++.+++.   +.+|+++|+ +++++.+++|++.++.           .+++++...|..+.....
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~l~~~  131 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV-----------DQRVTLREGPALQSLESL  131 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHTC
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHhc
Confidence            5789999999999999999987   678999999 8899999999998754           357888886654321111


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ....+||+|++..   .......+++.+.++|+|||.+++......
T Consensus       132 ~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~  174 (248)
T 3tfw_A          132 GECPAFDLIFIDA---DKPNNPHYLRWALRYSRPGTLIIGDNVVRD  174 (248)
T ss_dssp             CSCCCCSEEEECS---CGGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred             CCCCCeEEEEECC---chHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence            1234899999853   355677899999999999999888765443

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.53  E-value=7.4e-15  Score=115.53  Aligned_cols=104  Identities=18%  Similarity=0.186  Sum_probs=79.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +|.+|||+|||+|..+..+++.+ .+|+++|+ +++++.++++++..+             .++.+...+|.+... ...
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~-------------~~~~~~~~~a~~~~~-~~~  125 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVAP-TLP  125 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHGG-GSC
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC-------------CceEEEeehHHhhcc-ccc
Confidence            58899999999999999998875 46999999 889999999877653             357777777654321 223


Q ss_pred             CCCccEEEEc-----ccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          142 APPFDYIIGT-----DVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       142 ~~~fD~Ii~~-----d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ..+||.|+.-     ....+....+.+++.+.++|||||++.+..
T Consensus       126 ~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            5689999752     223344556789999999999999988754

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.52  E-value=9.7e-16  Score=120.40  Aligned_cols=102  Identities=18%  Similarity=0.068  Sum_probs=81.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..++.+++.|.+|+++|+ +.+++.+++|++.++.           ..++.+...|+.+..    ..
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~----~~  142 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGI-----------ADKIEFICGDFLLLA----SF  142 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHG----GG
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC-----------CcCeEEEECChHHhc----cc
Confidence            6789999999999999999999999999999 7899999999998853           246888887665442    34


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .+||+|+++.++++.......+..+.++|+|||.+++.
T Consensus       143 ~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          143 LKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             CCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             CCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence            68999999988877665555555666677777765544

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.52  E-value=8.8e-14  Score=109.02  Aligned_cols=132  Identities=15%  Similarity=0.112  Sum_probs=97.9

Q ss_pred             cccccccHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEEcC-cchHHHHHHHHHHhh
Q 028673           35 GTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNT  109 (205)
Q Consensus        35 g~~~W~~~~-~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~--~v~~~D~-~~~l~~~~~n~~~n~  109 (205)
                      ..++|+--. -||..+.....+    ....+|.+|||+|||+|..+..+|+. |.  +|+++|+ ++|++.++++++.. 
T Consensus        51 e~r~w~p~rsklaa~i~~gl~~----l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-  125 (233)
T 4df3_A           51 EYREWNAYRSKLAAALLKGLIE----LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-  125 (233)
T ss_dssp             EEEECCTTTCHHHHHHHTTCSC----CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-
T ss_pred             eeeeECCCchHHHHHHHhchhh----cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-
Confidence            566786533 456666543211    23457899999999999999999976 54  6999999 88999888776543 


Q ss_pred             hhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                                   .++.....+.............+|+|++ + +.++...+.++..+.+.|||||.++++...|..
T Consensus       126 -------------~ni~~V~~d~~~p~~~~~~~~~vDvVf~-d-~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~  187 (233)
T 4df3_A          126 -------------RNIFPILGDARFPEKYRHLVEGVDGLYA-D-VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI  187 (233)
T ss_dssp             -------------TTEEEEESCTTCGGGGTTTCCCEEEEEE-C-CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred             -------------cCeeEEEEeccCccccccccceEEEEEE-e-ccCChhHHHHHHHHHHhccCCCEEEEEEecccC
Confidence                         3577777776666555555678999886 3 445566778999999999999999999876654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.52  E-value=6e-14  Score=110.62  Aligned_cols=103  Identities=12%  Similarity=0.003  Sum_probs=84.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .++.+|||+|||+|..+..+++.+. +|+++|+ +.+++.+++++..+              .++.+...++.+..   .
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~~---~  154 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--------------PVGKFILASMETAT---L  154 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--------------SEEEEEESCGGGCC---C
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--------------CceEEEEccHHHCC---C
Confidence            3578999999999999999988754 6999999 78999998876543              35777776665432   2


Q ss_pred             CCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..++||+|+++.++++.  .....+++.+.++|+|||.++++.+
T Consensus       155 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            35689999999999887  4578999999999999999999875

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.52  E-value=7.9e-14  Score=104.90  Aligned_cols=107  Identities=19%  Similarity=0.145  Sum_probs=85.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|+..++.           ..++.+...++.+.  .. 
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~--~~-   96 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL-----------GDNVTLMEGDAPEA--LC-   96 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------CTTEEEEESCHHHH--HT-
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCC-----------CcceEEEecCHHHh--cc-
Confidence            346789999999999999999998888999999 7899999999988743           24678877665441  11 


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..++||+|+++.++   +....+++.+.++|+|||.+++......
T Consensus        97 ~~~~~D~v~~~~~~---~~~~~~l~~~~~~l~~gG~l~~~~~~~~  138 (192)
T 1l3i_A           97 KIPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAILLE  138 (192)
T ss_dssp             TSCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred             cCCCCCEEEECCch---HHHHHHHHHHHHhcCCCcEEEEEecCcc
Confidence            12489999998665   3578999999999999999998876543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.52  E-value=2.9e-15  Score=114.93  Aligned_cols=122  Identities=17%  Similarity=0.191  Sum_probs=70.1

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (205)
                      +..+.+++....      ....++.+|||+|||+|..++.+++.  +.+|+++|+ +.+++.+++|+..++.        
T Consensus        14 ~~~~~~~~~~~l------~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------   79 (215)
T 4dzr_A           14 TEVLVEEAIRFL------KRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--------   79 (215)
T ss_dssp             HHHHHHHHHHHH------TTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------
T ss_pred             HHHHHHHHHHHh------hhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--------
Confidence            445666665442      11146789999999999999999998  458999999 8899999999887742        


Q ss_pred             CCCCCceEEEEeecCCCCCc-ccCCCCccEEEEcccccCCcCh--------------------------HhHHHHHHHhh
Q 028673          119 SDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAEHLL--------------------------EPLLQTIFALS  171 (205)
Q Consensus       119 ~~~~~~i~~~~~dw~~~~~~-~~~~~~fD~Ii~~d~~y~~~~~--------------------------~~ll~~~~~~l  171 (205)
                           ++++...|+.+.... ....++||+|+++++++.....                          ..+++.+.++|
T Consensus        80 -----~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L  154 (215)
T 4dzr_A           80 -----VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVL  154 (215)
T ss_dssp             --------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGB
T ss_pred             -----ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHh
Confidence                 355555555431100 0013689999998887654322                          67778888899


Q ss_pred             CCCcE-EEEEEe
Q 028673          172 GPKTT-ILVMFS  182 (205)
Q Consensus       172 ~~~g~-~~i~~~  182 (205)
                      +|||. +++...
T Consensus       155 kpgG~l~~~~~~  166 (215)
T 4dzr_A          155 ARGRAGVFLEVG  166 (215)
T ss_dssp             CSSSEEEEEECT
T ss_pred             cCCCeEEEEEEC
Confidence            99999 666554

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.51  E-value=3.8e-14  Score=107.83  Aligned_cols=107  Identities=15%  Similarity=0.101  Sum_probs=83.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+|||+|||+|..++.+++. +  .+|+++|+ +++++.+++|++.++.           ..++++...|..+...  
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--   88 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-----------IDRVTLIKDGHQNMDK--   88 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-----------GGGEEEECSCGGGGGG--
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCeEEEECCHHHHhh--
Confidence            5789999999999999999986 2  58999999 7899999999988753           2468888876554432  


Q ss_pred             cCCCCccEEEEcccccCC---------cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          140 AVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...++||+|+++.+++..         .....+++.+.++|+|||.++++...
T Consensus        89 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           89 YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            234689999998665321         12357899999999999999988643

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.51  E-value=7.4e-14  Score=109.28  Aligned_cols=102  Identities=18%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++. .+|+++|+ +++++.+++++..++             .++.+...|..+..    ..
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~~----~~   94 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN-------------RHVDFWVQDMRELE----LP   94 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT-------------CCCEEEECCGGGCC----CS
T ss_pred             CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC-------------CceEEEEcChhhcC----CC
Confidence            4579999999999999999988 88999999 789999999987663             25777776655432    23


Q ss_pred             CCccEEEEcc-cccCC---cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTD-VVYAE---HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d-~~y~~---~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .+||+|+++. ++++.   .....+++.+.++|+|||.+++..+.
T Consensus        95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  139 (243)
T 3d2l_A           95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS  139 (243)
T ss_dssp             SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence            6899999974 77765   45668899999999999999987654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.51  E-value=4.4e-14  Score=114.51  Aligned_cols=110  Identities=17%  Similarity=0.190  Sum_probs=87.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+.+|||+|||+|..+..+++.|.+|+++|+ +.+++.+++++..++...         ..++.+...|..+..    ..
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---------~~~v~~~~~d~~~~~----~~  148 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADV---------RDRCTLVQGDMSAFA----LD  148 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHH---------HTTEEEEECBTTBCC----CS
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhccccc---------ccceEEEeCchhcCC----cC
Confidence            3459999999999999999999999999999 789999999987653210         136888887776643    25


Q ss_pred             CCccEEEEc-ccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          143 PPFDYIIGT-DVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       143 ~~fD~Ii~~-d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      .+||+|+++ .++++..  ....+++.+.++|+|||.+++....+..
T Consensus       149 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  195 (299)
T 3g2m_A          149 KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEA  195 (299)
T ss_dssp             CCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred             CCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence            789999865 4455443  3679999999999999999999876553

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.51  E-value=2.2e-14  Score=111.65  Aligned_cols=110  Identities=9%  Similarity=-0.042  Sum_probs=83.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+.+|||||||+|..++.+|+..  .+|+++|+ +++++.+++|++.++.            .++.+...|..+......
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l------------~nv~~~~~Da~~~l~~~~  101 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL------------SNLRVMCHDAVEVLHKMI  101 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC------------SSEEEECSCHHHHHHHHS
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC------------CcEEEEECCHHHHHHHHc
Confidence            46799999999999999999874  46999999 7899999999988754            467887755443211012


Q ss_pred             CCCCccEEEEc--ccccCCcCh------HhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGT--DVVYAEHLL------EPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~--d~~y~~~~~------~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .+.+||.|+++  ++.......      +.+++.+.++|+|||.++++...+.
T Consensus       102 ~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~  154 (218)
T 3dxy_A          102 PDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP  154 (218)
T ss_dssp             CTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred             CCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence            35689999988  544433222      3599999999999999999876554

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.51  E-value=1.3e-13  Score=106.91  Aligned_cols=107  Identities=18%  Similarity=0.163  Sum_probs=83.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~  138 (205)
                      ++++|||+|||+|..++.+++.   +.+|+++|+ +++++.+++|+..++.           .+++++...|..+.. ..
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~  126 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL-----------NDRVEVRTGLALDSLQQI  126 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence            5789999999999999999987   678999999 8899999999988754           346888886654321 11


Q ss_pred             ccC-CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          139 KAV-APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       139 ~~~-~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ... ..+||+|++...   ......+++.+.++|+|||.+++.....
T Consensus       127 ~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          127 ENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             HHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             HhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            111 157999998633   4567889999999999999888765544

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.51  E-value=5.8e-15  Score=111.67  Aligned_cols=104  Identities=8%  Similarity=0.063  Sum_probs=80.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ...+|||||||+|.+++.++..  +++|+++|+ +.|++.+++|++.++.           ..++++  .|   ... ..
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~-----------~~~v~~--~d---~~~-~~  111 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT-----------TIKYRF--LN---KES-DV  111 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC-----------SSEEEE--EC---CHH-HH
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CccEEE--ec---ccc-cC
Confidence            4679999999999999999877  668999999 7799999999999864           224555  22   211 13


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ...+||+|++..+++.....+..+..+.+.|+|+| ++|+++.|.
T Consensus       112 ~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pgg-vfISfptks  155 (200)
T 3fzg_A          112 YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQN-FVISFPIKS  155 (200)
T ss_dssp             TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEE-EEEEEECCC
T ss_pred             CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCC-EEEEeChHH
Confidence            45689999999999887666667778999999987 556776433

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.51  E-value=4.2e-14  Score=108.48  Aligned_cols=117  Identities=19%  Similarity=0.235  Sum_probs=89.3

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (205)
Q Consensus        43 ~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (205)
                      ..+.+++...         ..++.+|||+|||+|..++.+++.+. +|+++|+ +.+++.+++++...            
T Consensus        30 ~~~~~~l~~~---------~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~------------   88 (215)
T 2pxx_A           30 SSFRALLEPE---------LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV------------   88 (215)
T ss_dssp             HHHHHHHGGG---------CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC------------
T ss_pred             HHHHHHHHHh---------cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC------------
Confidence            3456666543         23577999999999999999999987 7999999 78999998876531            


Q ss_pred             CCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC---------------cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------------HLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       121 ~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~---------------~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                        .++.+...|..+.   ....++||+|+++.++.+.               .....+++.+.++|+|||.+++....+.
T Consensus        89 --~~i~~~~~d~~~~---~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  163 (215)
T 2pxx_A           89 --PQLRWETMDVRKL---DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP  163 (215)
T ss_dssp             --TTCEEEECCTTSC---CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred             --CCcEEEEcchhcC---CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence              3577877666543   2235689999998877432               2457899999999999999999877553

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.51  E-value=3.9e-14  Score=112.05  Aligned_cols=122  Identities=13%  Similarity=0.047  Sum_probs=81.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh----CCEEEEEcC-cchHHHHHHHHHHh---hhhhcc---------CCC-C----CCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWN---TSRISQ---------MNP-G----SDL  121 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~----g~~v~~~D~-~~~l~~~~~n~~~n---~~~~~~---------~~~-~----~~~  121 (205)
                      ++.+|||+|||+|..++.+++.    +.+|+++|+ +++++.+++|+..+   +.....         ... .    ...
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4679999999999999999987    467999999 78999999998766   431000         000 0    000


Q ss_pred             CCceE-------------EEEeecCCCCCcc--cCCCCccEEEEcccccCCcC---------hHhHHHHHHHhhCCCcEE
Q 028673          122 LGSIQ-------------AVELDWGNEDHIK--AVAPPFDYIIGTDVVYAEHL---------LEPLLQTIFALSGPKTTI  177 (205)
Q Consensus       122 ~~~i~-------------~~~~dw~~~~~~~--~~~~~fD~Ii~~d~~y~~~~---------~~~ll~~~~~~l~~~g~~  177 (205)
                      ..+++             +...|+.+.....  ....+||+|+++.++.....         ...+++.+.++|+|||.+
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence            00034             6666554421100  02348999999877654332         458899999999999999


Q ss_pred             EEEEeecc
Q 028673          178 LVMFSLSM  185 (205)
Q Consensus       178 ~i~~~~r~  185 (205)
                      +++...+.
T Consensus       211 ~~~~~~~~  218 (250)
T 1o9g_A          211 AVTDRSRK  218 (250)
T ss_dssp             EEEESSSC
T ss_pred             EEeCcchh
Confidence            99655443

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.51  E-value=6.4e-14  Score=113.20  Aligned_cols=104  Identities=15%  Similarity=0.196  Sum_probs=82.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|.+++.+++. +++|+++|+ +++++.+++|++.++.           .+++++...||.+..     
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l-----------~~~v~~~~~D~~~~~-----  186 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----------SDRFFVRKGEFLEPF-----  186 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----------TTSEEEEESSTTGGG-----
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECcchhhc-----
Confidence            4579999999999999999998 778999999 7899999999998854           345899988776532     


Q ss_pred             CCCc---cEEEEcccccCCc---------C----------hHhHHHHHH-HhhCCCcEEEEEEee
Q 028673          142 APPF---DYIIGTDVVYAEH---------L----------LEPLLQTIF-ALSGPKTTILVMFSL  183 (205)
Q Consensus       142 ~~~f---D~Ii~~d~~y~~~---------~----------~~~ll~~~~-~~l~~~g~~~i~~~~  183 (205)
                      .++|   |+|++++++....         .          ...+++.+. +.++|||.+++....
T Consensus       187 ~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~  251 (284)
T 1nv8_A          187 KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  251 (284)
T ss_dssp             GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            2468   9999986654221         1          116788888 999999999987654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.51  E-value=6.6e-14  Score=107.26  Aligned_cols=100  Identities=19%  Similarity=0.301  Sum_probs=82.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|..++.+++.  +.+|+++|. +++++.+++|+..++.            .++.+...++.+..    
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~----  128 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------------ENIEPVQSRVEEFP----  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------------SSEEEEECCTTTSC----
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCeEEEecchhhCC----
Confidence            4789999999999999999987  668999999 7899999999988753            34788887776543    


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ..++||+|+++.    ......+++.+.++|+|||.+++....
T Consensus       129 ~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~  167 (207)
T 1jsx_A          129 SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            246899999864    256789999999999999999988653

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.50  E-value=2.2e-13  Score=110.06  Aligned_cols=101  Identities=16%  Similarity=0.204  Sum_probs=81.5

Q ss_pred             CCCCCeEEEeCCCcc-HHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGCG-VAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtG-l~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..++.+|||+|||+| +.++.+|+ .|++|+++|+ +++++.|+++++..+.            +++++...|..+   .
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl------------~~v~~v~gDa~~---l  184 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV------------DGVNVITGDETV---I  184 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC------------CSEEEEESCGGG---G
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC------------CCeEEEECchhh---C
Confidence            457889999999997 45566776 4889999999 8899999999987742            478888855443   2


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +  ..+||+|+.+..   ....+.+++.+.+.|+|||++++...
T Consensus       185 ~--d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          185 D--GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             G--GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             C--CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            2  568999998644   46788999999999999999998764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.50  E-value=1.3e-13  Score=116.11  Aligned_cols=111  Identities=15%  Similarity=0.181  Sum_probs=83.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      +|++|||+|||||..++.+++.|++|+++|+ +.+++.+++|++.|+..             ..+...|..+.  .....
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~-------------~~~~~~D~~~~--l~~~~  278 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR-------------VDIRHGEALPT--LRGLE  278 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC-------------CEEEESCHHHH--HHTCC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCC-------------CcEEEccHHHH--HHHhc
Confidence            3889999999999999999999999999999 78999999999999751             23334332221  11113


Q ss_pred             CCccEEEEcccccCC---------cChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          143 PPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      +.||+|++.++.+..         ..+..+++.+.++|+|||.++++.........
T Consensus       279 ~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~  334 (393)
T 4dmg_A          279 GPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLE  334 (393)
T ss_dssp             CCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHH
T ss_pred             CCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHH
Confidence            349999998776553         23457888889999999999977776665544

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.50  E-value=1.1e-13  Score=108.41  Aligned_cols=102  Identities=14%  Similarity=0.127  Sum_probs=82.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHH--hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc-
Q 028673           64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~-  139 (205)
                      ++++|||+|||+|..++.+++  .+.+|+++|+ +++++.+++|++.++.           .+++++...|..+..  . 
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--~~  137 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF-----------ENQVRIIEGNALEQF--EN  137 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-----------TTTEEEEESCGGGCH--HH
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECCHHHHH--Hh
Confidence            578999999999999999998  4678999999 8899999999988753           347888886665432  1 


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ....+||+|++.   ........+++.+.++|+|||.+++..
T Consensus       138 ~~~~~fD~V~~~---~~~~~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          138 VNDKVYDMIFID---AAKAQSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             HTTSCEEEEEEE---TTSSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hccCCccEEEEc---CcHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            125689999976   345678889999999999999998743

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=6.6e-14  Score=112.39  Aligned_cols=103  Identities=16%  Similarity=0.121  Sum_probs=84.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .++.+|||+|||+|.+++.+++.+.  +|+++|. +++++.+++|++.|+.            .++.+...|..+. .  
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l------------~~~~~~~~d~~~~-~--  182 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL------------NNVIPILADNRDV-E--  182 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC------------SSEEEEESCGGGC-C--
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCEEEEECChHHc-C--
Confidence            3678999999999999999999854  8999999 8899999999999964            3577777665544 1  


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                       ...+||+|++..+.    ....++..+.+.|+|||.++++.....
T Consensus       183 -~~~~~D~Vi~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          183 -LKDVADRVIMGYVH----KTHKFLDKTFEFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             -CTTCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             -ccCCceEEEECCcc----cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence             15689999997654    667788999999999999998877653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.50  E-value=2e-13  Score=102.87  Aligned_cols=102  Identities=22%  Similarity=0.293  Sum_probs=81.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++++.                 ++.+...+..+..   ...
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~-----------------~~~~~~~d~~~~~---~~~  105 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP-----------------EARWVVGDLSVDQ---ISE  105 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCTTTSC---CCC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC-----------------CCcEEEcccccCC---CCC
Confidence            5779999999999999999999999999999 778888887642                 3567776655432   235


Q ss_pred             CCccEEEEc-ccccCC--cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          143 PPFDYIIGT-DVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       143 ~~fD~Ii~~-d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ++||+|+++ +++++.  +....+++.+.++|+|||.+++..+...
T Consensus       106 ~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~  151 (195)
T 3cgg_A          106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR  151 (195)
T ss_dssp             CCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             CceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence            689999998 666654  4457899999999999999999887554

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.50  E-value=8.6e-13  Score=109.57  Aligned_cols=150  Identities=17%  Similarity=0.119  Sum_probs=103.1

Q ss_pred             EEEEEEcCeEEEEEeCCCCcccccc------ccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC
Q 028673           13 VINLEVLGHQLQFSQDPNSKHLGTT------VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG   86 (205)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~------~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g   86 (205)
                      ++.+.+.+....+.-+..+...-..      ..+-...+++.+...       ....++.+|||+|||+|.+++.++..+
T Consensus       153 ~i~v~i~~d~~~l~~d~sg~~l~~r~yr~~~~a~l~~~la~~l~~~-------~~~~~~~~vLD~gcGsG~~~ie~a~~~  225 (354)
T 3tma_A          153 RVRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRL-------ADARPGMRVLDPFTGSGTIALEAASTL  225 (354)
T ss_dssp             EEEEEEETTEEEEEEECCSSCGGGCCGGGCSSCSCCHHHHHHHHHH-------TTCCTTCCEEESSCTTSHHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEEccCCcccccccccCCCCCcCHHHHHHHHHH-------hCCCCCCEEEeCCCCcCHHHHHHHHhh
Confidence            4455555656666554432211111      112234566665544       223357799999999999999999875


Q ss_pred             ---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc----
Q 028673           87 ---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----  158 (205)
Q Consensus        87 ---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~----  158 (205)
                         .+|+++|+ +.+++.+++|++.++.            .++++...|..+..   .....||+|++++++....    
T Consensus       226 ~~~~~v~g~Di~~~~i~~a~~n~~~~g~------------~~i~~~~~D~~~~~---~~~~~~D~Ii~npPyg~r~~~~~  290 (354)
T 3tma_A          226 GPTSPVYAGDLDEKRLGLAREAALASGL------------SWIRFLRADARHLP---RFFPEVDRILANPPHGLRLGRKE  290 (354)
T ss_dssp             CTTSCEEEEESCHHHHHHHHHHHHHTTC------------TTCEEEECCGGGGG---GTCCCCSEEEECCCSCC----CH
T ss_pred             CCCceEEEEECCHHHHHHHHHHHHHcCC------------CceEEEeCChhhCc---cccCCCCEEEECCCCcCccCCcc
Confidence               67999999 8899999999998864            26888886665532   2345689999987754311    


Q ss_pred             ----ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          159 ----LLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       159 ----~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                          .+..+++.+.++|+|||.+++..+..
T Consensus       291 ~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~  320 (354)
T 3tma_A          291 GLFHLYWDFLRGALALLPPGGRVALLTLRP  320 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred             cHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence                13678899999999999999987754

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.50  E-value=1.4e-13  Score=106.48  Aligned_cols=107  Identities=15%  Similarity=0.060  Sum_probs=81.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+.+|||+|||+|..++.+|+.  +.+|+++|+ +++++.+++|+..++.            .++.+...|..+.... .
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~------------~nv~~~~~d~~~l~~~-~  104 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------------QNVKLLNIDADTLTDV-F  104 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------------SSEEEECCCGGGHHHH-C
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC------------CCEEEEeCCHHHHHhh-c
Confidence            4678999999999999999987  568999999 7899999999988753            4688887666542110 2


Q ss_pred             CCCCccEEEEcccccCCc--------ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...+||.|+++.+.-+..        ..+.+++.+.++|+|||.+++....
T Consensus       105 ~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~  155 (213)
T 2fca_A          105 EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN  155 (213)
T ss_dssp             CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred             CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence            246799998763221111        1468999999999999999998743

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.49  E-value=2.1e-14  Score=112.54  Aligned_cols=105  Identities=19%  Similarity=0.180  Sum_probs=78.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..+..+++.+. +|+++|+ +++++.++++++.++             .++.+...++.+... ...
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-------------~~v~~~~~d~~~~~~-~~~  125 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVAP-TLP  125 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHGG-GSC
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEecCHHHhhc-ccC
Confidence            567999999999999999988766 6999999 789999999876552             357787766654310 223


Q ss_pred             CCCccEEEE-cccc----cCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          142 APPFDYIIG-TDVV----YAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       142 ~~~fD~Ii~-~d~~----y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +++||+|++ ...+    .+....+.+++.+.++|+|||.+++...
T Consensus       126 ~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             CCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            568999999 3322    1223344779999999999999987653

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.49  E-value=2.4e-13  Score=109.32  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=80.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +|.+|||+|||+|.+++.+|+.|+ +|+++|+ +.+++.+++|++.|+.           .+++.+...|..+..    .
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v-----------~~~v~~~~~D~~~~~----~  189 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFP----G  189 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCC----C
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCcHHHhc----c
Confidence            588999999999999999999985 7999999 8899999999999975           467888886655442    2


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ...||.|+++.+.+.    ..++..+.+++++||.+.+-.
T Consensus       190 ~~~~D~Vi~~~p~~~----~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          190 ENIADRILMGYVVRT----HEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             CSCEEEEEECCCSSG----GGGHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCEEEECCCCcH----HHHHHHHHHHcCCCCEEEEEe
Confidence            468999999866543    356666778899999876543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.49  E-value=2e-13  Score=106.73  Aligned_cols=105  Identities=13%  Similarity=0.056  Sum_probs=80.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .++.+|||+|||+|..+..+++. |  .+|+++|+ +.+++.+.++++.+              .++.+...|..+....
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--------------~~v~~~~~d~~~~~~~  141 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--------------TNIIPVIEDARHPHKY  141 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--------------TTEEEECSCTTCGGGG
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--------------CCeEEEEcccCChhhh
Confidence            35789999999999999999987 3  68999999 77888888887765              2577777666553323


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .....+||+|+++.+  ..+....++..+.++|+|||.++++...
T Consensus       142 ~~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          142 RMLIAMVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             GGGCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cccCCcEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            333568999998644  3344456788899999999999997664

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.48  E-value=2.2e-13  Score=101.72  Aligned_cols=111  Identities=15%  Similarity=0.124  Sum_probs=81.3

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (205)
                      +.+..|.+++...         ..++.+|||+|||+|.+++.+++.+ +|+++|+ +++++.      .           
T Consensus         8 ~~~~~l~~~l~~~---------~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~------~-----------   60 (170)
T 3q87_B            8 EDTYTLMDALERE---------GLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES------H-----------   60 (170)
T ss_dssp             HHHHHHHHHHHHH---------TCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT------C-----------
T ss_pred             ccHHHHHHHHHhh---------cCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc------c-----------
Confidence            3456677776441         1357799999999999999999999 9999999 777765      1           


Q ss_pred             CCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC---------hHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------LEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       119 ~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                          .++.+...|+.+..    ..++||+|+++.+++....         ...+++.+.+.+ |||.++++......
T Consensus        61 ----~~~~~~~~d~~~~~----~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~  128 (170)
T 3q87_B           61 ----RGGNLVRADLLCSI----NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR  128 (170)
T ss_dssp             ----SSSCEEECSTTTTB----CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC
T ss_pred             ----cCCeEEECChhhhc----ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC
Confidence                24677776665532    2368999999988775333         245677777777 99999998765443

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.48  E-value=1.9e-13  Score=111.40  Aligned_cols=117  Identities=9%  Similarity=0.016  Sum_probs=78.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC---Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~---~~  138 (205)
                      .+.+|||||||+|.....+++. +++|+++|+ ++|++.|++.....+....      ...-.+++...+.....   .+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~------~~~~~~~f~~~d~~~d~~~~~l  121 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIK------TKYYKFDYIQETIRSDTFVSSV  121 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----------CCCEEEEEECCTTSSSHHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcccccc------ccccccchhhhhcccchhhhhh
Confidence            4789999999999655444444 578999999 7899999987765421000      00001344444332111   01


Q ss_pred             --ccCCCCccEEEEcccccC---CcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          139 --KAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       139 --~~~~~~fD~Ii~~d~~y~---~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                        ....++||+|++..++++   ......+++.+.++|+|||.++++.+.+..
T Consensus       122 ~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~  174 (302)
T 2vdw_A          122 REVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDK  174 (302)
T ss_dssp             HTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             hccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence              112468999999888753   245689999999999999999999875443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.48  E-value=2.8e-13  Score=114.22  Aligned_cols=116  Identities=20%  Similarity=0.210  Sum_probs=89.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-ccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-~~~  140 (205)
                      ++++|||+|||+|..++.+++.|+ +|+++|+ +++++.+++|++.|+..          .+++++...|..+... ...
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~----------~~~v~~~~~D~~~~~~~~~~  289 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----------LSKAEFVRDDVFKLLRTYRD  289 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----------GGGEEEEESCHHHHHHHHHH
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------ccceEEEECCHHHHHHHHHh
Confidence            578999999999999999999975 7999999 78999999999998530          1267888766543311 111


Q ss_pred             CCCCccEEEEcccccCC---------cChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          141 VAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      ...+||+|++.++.+..         .....++..+.++|+|||.++++........+
T Consensus       290 ~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  347 (396)
T 3c0k_A          290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSD  347 (396)
T ss_dssp             TTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHH
T ss_pred             cCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHH
Confidence            14589999998776543         45678889999999999999999877666543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.48  E-value=1.5e-13  Score=123.57  Aligned_cols=114  Identities=20%  Similarity=0.180  Sum_probs=90.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +|++|||+|||||..++.+++.|+. |+++|+ +.+++.+++|++.|+..          .+++++...|..+.  ....
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~----------~~~v~~i~~D~~~~--l~~~  606 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT----------GRAHRLIQADCLAW--LREA  606 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----------STTEEEEESCHHHH--HHHC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHH--HHhc
Confidence            6889999999999999999998885 999999 78999999999999651          14688888665432  1123


Q ss_pred             CCCccEEEEcccccCC-----------cChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          142 APPFDYIIGTDVVYAE-----------HLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~-----------~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      ..+||+|++.++.|..           ..+..+++.+.++|+|||.++++...+.....
T Consensus       607 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~  665 (703)
T 3v97_A          607 NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMD  665 (703)
T ss_dssp             CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCC
T ss_pred             CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccC
Confidence            4689999998776542           24567888999999999999999988776654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.47  E-value=2.5e-13  Score=105.87  Aligned_cols=109  Identities=12%  Similarity=0.024  Sum_probs=84.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|.+++.+++.+.  +|+++|+ +.+++.+++|++.|+.           .+++++...|+.+..  . 
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----------~~~i~~~~~d~l~~l--~-   80 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL-----------KEKIQVRLANGLAAF--E-   80 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGC--C-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEECchhhhc--c-
Confidence            567999999999999999999874  5999999 7899999999999965           457899887664322  1 


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchh
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSL  188 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~  188 (205)
                      ...+||+|+.+..--  ..+..++......|+++|.++++........
T Consensus        81 ~~~~~D~IviaG~Gg--~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~v  126 (225)
T 3kr9_A           81 ETDQVSVITIAGMGG--RLIARILEEGLGKLANVERLILQPNNREDDL  126 (225)
T ss_dssp             GGGCCCEEEEEEECH--HHHHHHHHHTGGGCTTCCEEEEEESSCHHHH
T ss_pred             cCcCCCEEEEcCCCh--HHHHHHHHHHHHHhCCCCEEEEECCCCHHHH
Confidence            112799988765422  3467888888889999999888766433333

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.47  E-value=2e-13  Score=106.41  Aligned_cols=102  Identities=10%  Similarity=0.054  Sum_probs=79.8

Q ss_pred             CCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCC-CceEEEEeecCCCCCcc
Q 028673           65 GKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL-GSIQAVELDWGNEDHIK  139 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~-~~i~~~~~dw~~~~~~~  139 (205)
                      +.+|||+|||+|..++.+++.   +++|+++|. +++++.+++|++.++.           . +++++...|..+... .
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~~i~~~~gda~~~l~-~  124 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY-----------SPSRVRFLLSRPLDVMS-R  124 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC-----------CGGGEEEECSCHHHHGG-G
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CcCcEEEEEcCHHHHHH-H
Confidence            349999999999999999985   578999999 8899999999998754           2 468887755433211 1


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ...++||+|++..   .......+++.+.++|+|||.+++..
T Consensus       125 ~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          125 LANDSYQLVFGQV---SPMDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             SCTTCEEEEEECC---CTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             hcCCCcCeEEEcC---cHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence            1146899999853   34567789999999999999998853

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.47  E-value=2.7e-13  Score=114.27  Aligned_cols=115  Identities=15%  Similarity=0.124  Sum_probs=89.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-ccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-~~~  140 (205)
                      ++++|||+|||+|..++.+++.|+ +|+++|+ +++++.+++|++.|+.           .+++++...|..+... ...
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~-----------~~~v~~~~~d~~~~~~~~~~  285 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----------EDRMKFIVGSAFEEMEKLQK  285 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CccceEEECCHHHHHHHHHh
Confidence            578999999999999999999876 7999999 8899999999999964           2367888766543311 111


Q ss_pred             CCCCccEEEEcccccCC---------cChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          141 VAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      ...+||+|++.++.+..         .....++..+.++|+|||.++++.........
T Consensus       286 ~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~  343 (396)
T 2as0_A          286 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQ  343 (396)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHH
T ss_pred             hCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHH
Confidence            24689999997776653         34567888889999999999888876665543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.47  E-value=6.1e-14  Score=114.10  Aligned_cols=107  Identities=16%  Similarity=0.115  Sum_probs=86.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHH--Hh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGVAGFGMA--LL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a--~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .++.+|||+|||+|..++.++  .. +.+|+++|+ +.+++.+++|+..++.           .+++++...|+.+..  
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--  183 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL-----------AGQITLHRQDAWKLD--  183 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEECCGGGCC--
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECchhcCC--
Confidence            367899999999999999885  22 568999999 8899999999887643           346888887766543  


Q ss_pred             ccCCCCccEEEEcccccCCcChHh---HHHHHHHhhCCCcEEEEEEeec
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEP---LLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~---ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                       . .++||+|+++.++++......   +++.+.++|+|||.++++...+
T Consensus       184 -~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          184 -T-REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             -C-CSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             -c-cCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence             2 278999999999988766554   7999999999999999987543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.47  E-value=2.9e-13  Score=105.82  Aligned_cols=110  Identities=15%  Similarity=0.041  Sum_probs=85.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|.+++.+++.+.  +|+++|+ +.+++.|++|++.|+.           .+++++...|+.+..   .
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl-----------~~~I~~~~gD~l~~~---~   86 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL-----------TSKIDVRLANGLSAF---E   86 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGC---C
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhcc---c
Confidence            567999999999999999999874  5999999 7899999999999965           457899886655432   1


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      ...+||+|+.+.+.-  ..+..++......++++|.++++-......+.
T Consensus        87 ~~~~~D~IviaGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr  133 (230)
T 3lec_A           87 EADNIDTITICGMGG--RLIADILNNDIDKLQHVKTLVLQPNNREDDLR  133 (230)
T ss_dssp             GGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHH
T ss_pred             cccccCEEEEeCCch--HHHHHHHHHHHHHhCcCCEEEEECCCChHHHH
Confidence            123799988665443  45778888888889999998888765444443

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.47  E-value=9.9e-14  Score=110.25  Aligned_cols=101  Identities=17%  Similarity=0.174  Sum_probs=80.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.++++...                +  +...+..+.   +...
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~----------------~--~~~~d~~~~---~~~~  112 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK----------------N--VVEAKAEDL---PFPS  112 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS----------------C--EEECCTTSC---CSCT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC----------------C--EEECcHHHC---CCCC
Confidence            5789999999999999999999999999999 7899888875321                1  444443332   2335


Q ss_pred             CCccEEEEcccccC-CcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          143 PPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~-~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ++||+|++..++++ ......+++.+.++|+|||.+++..+.+.
T Consensus       113 ~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  156 (260)
T 2avn_A          113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY  156 (260)
T ss_dssp             TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred             CCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence            68999999876654 46689999999999999999999987664

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.47  E-value=1.3e-13  Score=107.07  Aligned_cols=106  Identities=20%  Similarity=0.078  Sum_probs=82.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++++|||+|||+|..++.+++.   +.+|+++|+ +++++.++++++.++.           .+++++...+..+.....
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~  132 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL-----------SDKIGLRLSPAKDTLAEL  132 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeCCHHHHHHHh
Confidence            5679999999999999999987   678999999 7899999999988754           346888886654321100


Q ss_pred             cC---CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          140 AV---APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       140 ~~---~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ..   ..+||+|++..   .......+++.+.++|+|||.+++....
T Consensus       133 ~~~~~~~~fD~v~~~~---~~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          133 IHAGQAWQYDLIYIDA---DKANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             HTTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             hhccCCCCccEEEECC---CHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            00   16899999753   3456788999999999999999987554

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.47  E-value=8.6e-14  Score=120.07  Aligned_cols=105  Identities=16%  Similarity=0.183  Sum_probs=83.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++++|||+|||+|.+++.+++.++ +|+++|++++++.++++++.|+.           .+++++...|+.+..    
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl-----------~~~v~~~~~d~~~~~----  220 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNL-----------TDRIVVIPGKVEEVS----  220 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC----
T ss_pred             hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhCc----
Confidence            34678999999999999999999876 79999994499999999998854           457899998776642    


Q ss_pred             CCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEE
Q 028673          141 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .+++||+|+++.++|+.  +.....+..+.++|+|||.+++..
T Consensus       221 ~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          221 LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             CSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             cCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            23589999998877753  333455667788999999998644

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.46  E-value=5.2e-13  Score=105.58  Aligned_cols=104  Identities=15%  Similarity=0.112  Sum_probs=84.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.++.           .+++++...|+.+.  
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--  157 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----------DDRVTIKLKDIYEG--  157 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC-----------TTTEEEECSCGGGC--
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC-----------CCceEEEECchhhc--
Confidence            346789999999999999999988   578999999 7899999999998854           24588888776643  


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                        ....+||+|+++     ......+++.+.++|+|||.+++..+...
T Consensus       158 --~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  198 (255)
T 3mb5_A          158 --IEEENVDHVILD-----LPQPERVVEHAAKALKPGGFFVAYTPCSN  198 (255)
T ss_dssp             --CCCCSEEEEEEC-----SSCGGGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred             --cCCCCcCEEEEC-----CCCHHHHHHHHHHHcCCCCEEEEEECCHH
Confidence              124579999984     34556789999999999999998876443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.46  E-value=2.8e-13  Score=105.36  Aligned_cols=106  Identities=18%  Similarity=0.147  Sum_probs=79.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .++.+|||+|||+|..++.+++. |  .+|+++|. +++++.+++|++.+              .++.+...|..+....
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--------------~~v~~~~~d~~~~~~~  137 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--------------RNIVPILGDATKPEEY  137 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--------------TTEEEEECCTTCGGGG
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--------------CCCEEEEccCCCcchh
Confidence            35789999999999999999976 4  68999999 78999888887654              3578888766653221


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .....+||+|++..+  .......+++.+.++|+|||.++++...+
T Consensus       138 ~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  181 (227)
T 1g8a_A          138 RALVPKVDVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIAVKSR  181 (227)
T ss_dssp             TTTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             hcccCCceEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            222458999997644  23333455999999999999999985543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.46  E-value=5.4e-13  Score=102.79  Aligned_cols=102  Identities=17%  Similarity=0.137  Sum_probs=80.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++.+|||+|||+|..+..+++.+   .+|+++|. +++++.+++++..++.            .++.+...+..... 
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~-  141 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY------------DNVIVIVGDGTLGY-  141 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEESCGGGCC-
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCeEEEECCcccCC-
Confidence            3467899999999999999999875   68999999 7899999999887653            34777776653221 


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                        ....+||+|+++.++++..      +.+.++|+|||.+++.....
T Consensus       142 --~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          142 --EPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             --GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred             --CCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence              1245899999998887543      47889999999999987654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.46  E-value=3.2e-13  Score=105.52  Aligned_cols=103  Identities=15%  Similarity=0.131  Sum_probs=81.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|..++.+++.  +.+|+++|. +++++.+++|++.++.           ..++.+...|..+......
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~~  122 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL-----------ESRIELLFGDALQLGEKLE  122 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCGGGSHHHHT
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECCHHHHHHhcc
Confidence            5679999999999999999987  578999999 7899999999988753           2467887766544211110


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ...+||+|++..+.   +....+++.+.++|+|||.+++.
T Consensus       123 ~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          123 LYPLFDVLFIDAAK---GQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             TSCCEEEEEEEGGG---SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cCCCccEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEE
Confidence            14689999987553   47789999999999999999886

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.46  E-value=3.7e-13  Score=106.00  Aligned_cols=110  Identities=12%  Similarity=0.032  Sum_probs=85.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|.+++.+++.+.  +|+++|+ +.+++.|++|++.|+.           .+++++...|..+..   .
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----------~~~I~v~~gD~l~~~---~   86 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL-----------TEQIDVRKGNGLAVI---E   86 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGC---C
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEecchhhcc---C
Confidence            567999999999999999999874  5999999 7899999999999965           456888886654432   1


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      ...+||+|+.+...-  ..+..++......|++++.++++-........
T Consensus        87 ~~~~~D~IviagmGg--~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr  133 (244)
T 3gnl_A           87 KKDAIDTIVIAGMGG--TLIRTILEEGAAKLAGVTKLILQPNIAAWQLR  133 (244)
T ss_dssp             GGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHH
T ss_pred             ccccccEEEEeCCch--HHHHHHHHHHHHHhCCCCEEEEEcCCChHHHH
Confidence            123699988754333  45667888888889999998888765544444

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.46  E-value=1.8e-12  Score=108.23  Aligned_cols=107  Identities=14%  Similarity=0.064  Sum_probs=87.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+.+|||+|||+|..+..+++.  +.+++++|++++++.+++++...+.           .+++++...|..+.  .   
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l-----------~~~v~~~~~d~~~~--~---  265 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGL-----------ADRCEILPGDFFET--I---  265 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTTC--C---
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCc-----------CCceEEeccCCCCC--C---
Confidence            4679999999999999999987  4589999998899999999887643           45789999777622  1   


Q ss_pred             CCCccEEEEcccccCCcChH--hHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          142 APPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~--~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      +..||+|+++.++++.....  .+++.+++.|+|||.+++.......
T Consensus       266 p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  312 (369)
T 3gwz_A          266 PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE  312 (369)
T ss_dssp             CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred             CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            22799999999998776654  7999999999999999998765443

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.45  E-value=2.3e-13  Score=105.27  Aligned_cols=102  Identities=19%  Similarity=0.150  Sum_probs=81.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++.                   ..+...|..+.. ....+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-------------------~~~~~~d~~~~~-~~~~~   91 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-------------------DHVVLGDIETMD-MPYEE   91 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-------------------SEEEESCTTTCC-CCSCT
T ss_pred             CCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-------------------CcEEEcchhhcC-CCCCC
Confidence            5789999999999999999988888999999 77877776532                   144454444321 12234


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ++||+|++++++++......+++.+.++|+|||.++++.+...
T Consensus        92 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  134 (230)
T 3cc8_A           92 EQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVS  134 (230)
T ss_dssp             TCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred             CccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            6899999999999988899999999999999999999987643

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.45  E-value=4.1e-13  Score=109.53  Aligned_cols=116  Identities=16%  Similarity=0.061  Sum_probs=85.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC---Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~---~~  138 (205)
                      ++.+|||+|||+|..+..+++. +.+|+++|+ +++++.++++...+.....     .....++.+...|..+..   .+
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~  108 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRD-----SEYIFSAEFITADSSKELLIDKF  108 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSC-----C-CCCEEEEEECCTTTSCSTTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhccc-----ccccceEEEEEecccccchhhhc
Confidence            5679999999999999888876 558999999 7899999998876531000     001235788887766543   12


Q ss_pred             ccCCCCccEEEEcccccCC----cChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          139 KAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .....+||+|+++.++++.    .....+++.+.++|+|||.++++.+..
T Consensus       109 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          109 RDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             SSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             ccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            2124589999999998765    335689999999999999999998754

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.44  E-value=3.3e-13  Score=105.42  Aligned_cols=104  Identities=13%  Similarity=0.087  Sum_probs=77.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .++.+|||+|||+|..++.+++. + .+|+++|+ +++++.+++|++.+              .++.+...|..+.....
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------~~v~~~~~d~~~~~~~~  138 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--------------ENIIPILGDANKPQEYA  138 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--------------TTEEEEECCTTCGGGGT
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--------------CCeEEEECCCCCccccc
Confidence            35789999999999999999987 4 67999999 78999999886544              35777776665422111


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ....+||+|+..  +........+++.+.++|+|||.++++..
T Consensus       139 ~~~~~~D~v~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  179 (230)
T 1fbn_A          139 NIVEKVDVIYED--VAQPNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             TTSCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccCccEEEEEEe--cCChhHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            122689999932  12233347789999999999999999844

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.44  E-value=1.3e-13  Score=111.47  Aligned_cols=110  Identities=14%  Similarity=0.240  Sum_probs=77.7

Q ss_pred             CCCeEEEeCCCccHHHHHHH----Hh--CCEE--EEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC
Q 028673           64 KGKRVIELGAGCGVAGFGMA----LL--GCNV--ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a----~~--g~~v--~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~  134 (205)
                      ++.+|||+|||+|.++..++    ..  +.+|  +++|. ++|++.+++++.....           ..++.+...+ .+
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~-----------~~~v~~~~~~-~~  119 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN-----------LENVKFAWHK-ET  119 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS-----------CTTEEEEEEC-SC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC-----------CCcceEEEEe-cc
Confidence            45699999999997665332    22  3444  99999 7899999988764210           1234432111 11


Q ss_pred             CCCcc------cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          135 EDHIK------AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       135 ~~~~~------~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .....      ..+++||+|+++.++++..+.+.+++.++++|+|||.++++...+.
T Consensus       120 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  176 (292)
T 2aot_A          120 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS  176 (292)
T ss_dssp             HHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             hhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            11111      1256899999999999999999999999999999999999876543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.44  E-value=5.2e-13  Score=104.17  Aligned_cols=98  Identities=9%  Similarity=0.036  Sum_probs=78.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++.                 .++.+...|..+..   . .
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~---~-~   98 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL-----------------PDATLHQGDMRDFR---L-G   98 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC-----------------TTCEEEECCTTTCC---C-S
T ss_pred             CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC-----------------CCCEEEECCHHHcc---c-C
Confidence            5689999999999999999999889999999 78998888753                 13677776665432   2 5


Q ss_pred             CCccEEEE-cccccCC---cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          143 PPFDYIIG-TDVVYAE---HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       143 ~~fD~Ii~-~d~~y~~---~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .+||+|++ .+++++.   .....+++.+.++|+|||.+++...
T Consensus        99 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A           99 RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            68999995 5577665   4567899999999999999999743

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.44  E-value=3.9e-13  Score=107.82  Aligned_cols=102  Identities=14%  Similarity=0.100  Sum_probs=82.9

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|+ +++++.+++|++.+ +.            +++++...|+.+..
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~------------~~v~~~~~d~~~~~  175 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI------------GNVRTSRSDIADFI  175 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC------------TTEEEECSCTTTCC
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC------------CcEEEEECchhccC
Confidence            346789999999999999999987   678999999 88999999998876 52            36788876665521


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                          ...+||+|++.     ......+++.+.++|+|||.++++.+..
T Consensus       176 ----~~~~fD~Vi~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          176 ----SDQMYDAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             ----CSCCEEEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             ----cCCCccEEEEc-----CcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence                24689999983     3455789999999999999999988754

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.44  E-value=7.7e-13  Score=103.01  Aligned_cols=100  Identities=13%  Similarity=0.140  Sum_probs=79.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++..++              ++.+...|..+..   .
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~--------------~v~~~~~d~~~~~---~  130 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN--------------NIKLILGDGTLGY---E  130 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS--------------SEEEEESCGGGCC---G
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC--------------CeEEEECCccccc---c
Confidence            346789999999999999999999989999999 789999998876541              5777776655421   1


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ...+||+|+++.++++..      +.+.++|+|||.+++..+..
T Consensus       131 ~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          131 EEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             cCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence            246899999998887543      46888999999999987644

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.44  E-value=7.5e-13  Score=111.13  Aligned_cols=114  Identities=15%  Similarity=0.153  Sum_probs=88.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-cccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-~~~~  141 (205)
                      ++++|||+|||+|..++.+++.+.+|+++|+ +++++.+++|++.|+.            .++++...|..+... ....
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~------------~~~~~~~~d~~~~~~~~~~~  276 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL------------GNVRVLEANAFDLLRRLEKE  276 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC------------TTEEEEESCHHHHHHHHHHT
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CCceEEECCHHHHHHHHHhc
Confidence            6789999999999999999998667999999 8899999999999964            247777755443211 0111


Q ss_pred             CCCccEEEEcccccCC---------cChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          142 APPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      ..+||+|++.++.+..         .....++..+.++|+|||.++++.........
T Consensus       277 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  333 (382)
T 1wxx_A          277 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEP  333 (382)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHH
T ss_pred             CCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHH
Confidence            4689999997666553         33567888899999999999999876665544

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.44  E-value=2.7e-12  Score=106.70  Aligned_cols=104  Identities=14%  Similarity=0.201  Sum_probs=85.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..+..+++.  +.+++++|++++++.++++++.++.           .+++++...|..+..     
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-----  253 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES-----  253 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC-----------TTTEEEEECCTTTSC-----
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC-----------CCCEEEEeCccccCC-----
Confidence            5679999999999999999987  4589999997799999999987743           346888887765542     


Q ss_pred             CCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEee
Q 028673          142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .+.+|+|+++.++++...  ...+++.+.+.|+|||.+++....
T Consensus       254 ~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  297 (359)
T 1x19_A          254 YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  297 (359)
T ss_dssp             CCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred             CCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            123499999999987655  788999999999999999888754

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.44  E-value=9.1e-14  Score=112.12  Aligned_cols=120  Identities=17%  Similarity=0.119  Sum_probs=78.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhh------------hhhccCCCC------CCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNT------------SRISQMNPG------SDLL  122 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~------------~~~~~~~~~------~~~~  122 (205)
                      .++.+|||+|||+|..++.++. .+.+|+++|+ ++|++.++++++...            .........      .-..
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            4678999999999996665555 3678999999 789999888654210            000000000      0000


Q ss_pred             CceEEEEeecCCCCCc---ccCCCCccEEEEcccccC----CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          123 GSIQAVELDWGNEDHI---KAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       123 ~~i~~~~~dw~~~~~~---~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..+.+...|..+...+   ....++||+|+++.++++    ......+++.+.++|+|||.++++..
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~  216 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  216 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            0134455455442111   122456999999999987    45688999999999999999999753

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.44  E-value=2.2e-12  Score=106.01  Aligned_cols=102  Identities=14%  Similarity=0.086  Sum_probs=84.7

Q ss_pred             CeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           66 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      .+|||+|||+|..+..+++.  +.+++++|++++++.+++++..++.           .+++++...|..+.     .+.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~-----~~~  232 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLA-----------GERVSLVGGDMLQE-----VPS  232 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHH-----------TTSEEEEESCTTTC-----CCS
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCC-----------CCcEEEecCCCCCC-----CCC
Confidence            79999999999999999987  5589999997799999999887654           34688888776552     135


Q ss_pred             CccEEEEcccccCCcChH--hHHHHHHHhhCCCcEEEEEEee
Q 028673          144 PFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~--~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      +||+|+++.++++.....  .+++.+.+.|+|||.+++....
T Consensus       233 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          233 NGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             SCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            799999999998655444  9999999999999999998754

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.44  E-value=1.1e-12  Score=109.43  Aligned_cols=108  Identities=14%  Similarity=0.186  Sum_probs=86.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ..++|||+|||+|..+..+++.  +.+++++|++++++.+++++...+.           .+++++...|..+.. .+ .
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-~~-~  245 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSG-----------SERIHGHGANLLDRD-VP-F  245 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTT-----------GGGEEEEECCCCSSS-CC-C
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCc-----------ccceEEEEccccccC-CC-C
Confidence            4579999999999999999985  4579999998899999998876542           357899887765532 01 1


Q ss_pred             CCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      +.+||+|+++.++++...  ...+++.+++.|+|||++++.....
T Consensus       246 p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  290 (363)
T 3dp7_A          246 PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLW  290 (363)
T ss_dssp             CCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred             CCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence            358999999999987544  3588999999999999999987543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.43  E-value=7.1e-13  Score=108.55  Aligned_cols=101  Identities=26%  Similarity=0.204  Sum_probs=80.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC---EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++.+|||+|||+|..++.+++.+.   +|+++|+ +++++.+++|++.++.            .++++...|..+.. 
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------------~~v~~~~~d~~~~~-  139 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------------ENVIFVCGDGYYGV-  139 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGCC-
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CCeEEEECChhhcc-
Confidence            34678999999999999999998755   4999999 8899999999988754            34788876665432 


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                        ....+||+|++..++.+..      +.+.++|+|||.+++....
T Consensus       140 --~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          140 --PEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             --GGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred             --ccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence              1246899999998887544      5778899999999998653

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.43  E-value=6.5e-13  Score=105.16  Aligned_cols=104  Identities=14%  Similarity=0.014  Sum_probs=81.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~  138 (205)
                      ++++|||+|||+|..++.+++.   +.+|+++|+ +++++.+++|++.++.           .+++++...+..+.. ..
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~l~~l  147 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----------DHKIDFREGPALPVLDEM  147 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCeEEEECCHHHHHHHH
Confidence            5679999999999999999987   678999999 8899999999988753           346888876554321 11


Q ss_pred             cc---CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~---~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ..   ...+||+|++..   .......+++.+.++|+|||.+++..
T Consensus       148 ~~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          148 IKDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             HHSGGGTTCBSEEEECS---CSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             HhccCCCCCEEEEEEcC---chHHHHHHHHHHHHhCCCCeEEEEec
Confidence            00   146899999863   24577899999999999999998764

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.43  E-value=3.5e-13  Score=104.96  Aligned_cols=90  Identities=22%  Similarity=0.290  Sum_probs=74.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC-
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~-  141 (205)
                      ++.+|||+|||+|..+..+++.+++|+++|+ +.+++.++++   .              .++++...|+.+.  .+.. 
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~--------------~~~~~~~~d~~~~--~~~~~  108 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN---A--------------PHADVYEWNGKGE--LPAGL  108 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH---C--------------TTSEEEECCSCSS--CCTTC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh---C--------------CCceEEEcchhhc--cCCcC
Confidence            5789999999999999999999999999999 7899998887   1              2578888777533  2223 


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                      ..+||+|+++      .....+++.+.++|+|||.++
T Consensus       109 ~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          109 GAPFGLIVSR------RGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             CCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEE
T ss_pred             CCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEE
Confidence            5689999998      466788999999999999998

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.43  E-value=3.3e-12  Score=100.28  Aligned_cols=103  Identities=15%  Similarity=0.117  Sum_probs=82.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|++.++.           ..++++...|+.+..   ..
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---~~  155 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNL-----------GKNVKFFNVDFKDAE---VP  155 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTC-----------CTTEEEECSCTTTSC---CC
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC-----------CCcEEEEEcChhhcc---cC
Confidence            46789999999999999999988889999999 7899999999987743           246777776655432   12


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..+||+|+++.     .....+++.+.++|+|||.+++..+..
T Consensus       156 ~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~  193 (248)
T 2yvl_A          156 EGIFHAAFVDV-----REPWHYLEKVHKSLMEGAPVGFLLPTA  193 (248)
T ss_dssp             TTCBSEEEECS-----SCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred             CCcccEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            45799999852     355688999999999999999998754

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.43  E-value=7.1e-13  Score=108.82  Aligned_cols=107  Identities=16%  Similarity=0.184  Sum_probs=87.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..+..+++.  +.+++++|++++++.+++++..++.           .+++++...|..+..    .
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~----~  229 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGV-----------ASRYHTIAGSAFEVD----Y  229 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTC-----------GGGEEEEESCTTTSC----C
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC----C
Confidence            5679999999999999999987  6689999999889999999887643           346888887765532    1


Q ss_pred             CCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          142 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ...||+|+++.++++.  .....+++.+.+.|+|||.+++......
T Consensus       230 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          230 GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            3359999999999886  4457999999999999999999876543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.42  E-value=2.3e-13  Score=107.71  Aligned_cols=83  Identities=19%  Similarity=0.205  Sum_probs=62.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-C-Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D-HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~-~~  138 (205)
                      ++.+|||+|||+|.+++.+++.  +.+|+++|+ +++++.+++|++.++.           .+++++...|..+. . ..
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~~  133 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----------SDLIKVVKVPQKTLLMDAL  133 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTCSSTTTS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC-----------CccEEEEEcchhhhhhhhh
Confidence            5679999999999999988876  678999999 8899999999998854           34588888765441 1 11


Q ss_pred             ccC-CCCccEEEEcccccCC
Q 028673          139 KAV-APPFDYIIGTDVVYAE  157 (205)
Q Consensus       139 ~~~-~~~fD~Ii~~d~~y~~  157 (205)
                      ... +.+||+|+++++++..
T Consensus       134 ~~~~~~~fD~i~~npp~~~~  153 (254)
T 2h00_A          134 KEESEIIYDFCMCNPPFFAN  153 (254)
T ss_dssp             TTCCSCCBSEEEECCCCC--
T ss_pred             hcccCCcccEEEECCCCccC
Confidence            111 2589999999887653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.42  E-value=2.2e-12  Score=115.91  Aligned_cols=113  Identities=12%  Similarity=0.046  Sum_probs=87.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+|||+|||+|..++.+++.+   .+|+++|+ +++++.+++++.......      .....++++...|..+.   +
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAk------r~gl~nVefiqGDa~dL---p  791 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKE------ACNVKSATLYDGSILEF---D  791 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTT------CSSCSEEEEEESCTTSC---C
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchh------hcCCCceEEEECchHhC---C
Confidence            67899999999999999999998   68999999 789999998776531100      01124688888666554   3


Q ss_pred             cCCCCccEEEEcccccCCcChH--hHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~--~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ....+||+|++..++++.....  .+++.+.++|+|| .++++.+.+..
T Consensus       792 ~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey  839 (950)
T 3htx_A          792 SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF  839 (950)
T ss_dssp             TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG
T ss_pred             cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh
Confidence            3457899999999999866544  5899999999999 88888776543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.42  E-value=1.7e-12  Score=106.76  Aligned_cols=104  Identities=13%  Similarity=0.042  Sum_probs=85.8

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ..+|||+|||+|..+..+++.  +.+++++|++++++.+++++...+.           .+++++...|..+.  .   +
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~---p  233 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGL-----------SGRAQVVVGSFFDP--L---P  233 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--C---C
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCc-----------CcCeEEecCCCCCC--C---C
Confidence            579999999999999999886  4579999998899999999887643           35789998776522  1   2


Q ss_pred             CCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          143 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .+||+|++..++++...  ...+++.+++.|+|||.+++.....
T Consensus       234 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  277 (332)
T 3i53_A          234 AGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA  277 (332)
T ss_dssp             CSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred             CCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence            27999999999987665  4789999999999999999987643

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.42  E-value=9.6e-13  Score=109.72  Aligned_cols=103  Identities=15%  Similarity=0.070  Sum_probs=84.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..++.+++.  +.+++++|++++++.+++++..++.           .+++++...|+.+.  .   
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~---  245 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL-----------ADRVTVAEGDFFKP--L---  245 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--C---
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCC-----------CCceEEEeCCCCCc--C---
Confidence            5679999999999999999987  4589999997799999999987743           34788888776542  1   


Q ss_pred             CCCccEEEEcccccCCcCh--HhHHHHHHHhhCCCcEEEEEEe
Q 028673          142 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +..||+|+++.++++....  ..+++.+.+.|+|||.+++...
T Consensus       246 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          246 PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            2349999999999876554  3899999999999999998766

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.42  E-value=1.1e-12  Score=102.76  Aligned_cols=103  Identities=17%  Similarity=0.203  Sum_probs=79.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++.+|||+|||+|..+..+++.+ .+|+++|. +++++.+++|++.++.            .++.+...|....  ..
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~--~~  154 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------------KNVHVILGDGSKG--FP  154 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGC--CG
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCcEEEECCcccC--CC
Confidence            3367799999999999999999886 78999999 7899999999987753            3477777665211  11


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                       ...+||+|+++.++.+..      +.+.+.|+|||.+++..+...
T Consensus       155 -~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          155 -PKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             -GGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECSSS
T ss_pred             -CCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEecCC
Confidence             234699999987765432      467889999999999987544

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.41  E-value=1.1e-12  Score=108.50  Aligned_cols=106  Identities=12%  Similarity=0.070  Sum_probs=87.0

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      +.+|||+|||+|..+..+++.  +.+++++|++++++.+++++...+.           .+++++...|..+...  ..+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~~~  246 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDL-----------GGRVEFFEKNLLDARN--FEG  246 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC-----------GGGEEEEECCTTCGGG--GTT
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCC-----------CCceEEEeCCcccCcc--cCC
Confidence            689999999999999999987  4579999998899999999887643           3568998877665421  124


Q ss_pred             CCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ..||+|+++.++++...  ...+++.+++.|+|||.+++....
T Consensus       247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT  289 (352)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            56999999999987654  478999999999999999998754

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.41  E-value=2.6e-12  Score=105.24  Aligned_cols=105  Identities=14%  Similarity=0.018  Sum_probs=79.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+|||+|||+|..++.++..   +.+|+++|+ +.+++.+++|++.++.            .++.+...|..+..   
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~------------~~v~~~~~D~~~~~---  182 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------------LNVILFHSSSLHIG---  182 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------------CSEEEESSCGGGGG---
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC------------CeEEEEECChhhcc---
Confidence            5789999999999999999976   357999999 7899999999998864            35777775554432   


Q ss_pred             cCCCCccEEEEcccccCC------cC----------------hHhHHHHHHHhhCCCcEEEEEEee
Q 028673          140 AVAPPFDYIIGTDVVYAE------HL----------------LEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~------~~----------------~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ....+||+|++..+....      ..                ...+++.+.++|+|||.++++...
T Consensus       183 ~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          183 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            234689999985442111      10                147889999999999999987643

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.41  E-value=7.2e-13  Score=101.94  Aligned_cols=101  Identities=13%  Similarity=0.074  Sum_probs=80.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++++|||+|||+|..++.+++.   +.+|+++|+ +++++.+++|++.++.           .+++++...|..+..  +
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--~  122 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-----------IDRVELQVGDPLGIA--A  122 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-----------GGGEEEEESCHHHHH--T
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----------CceEEEEEecHHHHh--c
Confidence            4679999999999999999987   678999999 7899999999987753           246788876654321  1


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ...+ ||+|++.   ........+++.+.++|+|||.+++..
T Consensus       123 ~~~~-fD~v~~~---~~~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          123 GQRD-IDILFMD---CDVFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             TCCS-EEEEEEE---TTTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             cCCC-CCEEEEc---CChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence            1235 9999986   335678899999999999999988754

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.41  E-value=2.6e-13  Score=107.09  Aligned_cols=104  Identities=19%  Similarity=0.127  Sum_probs=82.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++++|||+|||+|..++.+++.   +++|+++|+ +++++.+++|++.++.           .+++++...|..+..  .
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~l--~  126 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ-----------EHKIKLRLGPALDTL--H  126 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC-----------TTTEEEEESCHHHHH--H
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHH--H
Confidence            5679999999999999999984   568999999 8899999999998854           357888886543321  1


Q ss_pred             cC-----CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          140 AV-----APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       140 ~~-----~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ..     .++||+|++..   .......+++.+.++|+|||.+++....
T Consensus       127 ~~~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          127 SLLNEGGEHQFDFIFIDA---DKTNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             HHHHHHCSSCEEEEEEES---CGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             HHhhccCCCCEeEEEEcC---ChHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence            11     36899999863   2566778999999999999999986544

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.41  E-value=8.2e-13  Score=112.21  Aligned_cols=111  Identities=20%  Similarity=0.323  Sum_probs=79.9

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEEcC-cchHHHH-------HHHHHHhhhhhccCCCCCCCCCceEEEEee
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLL-------KRNVEWNTSRISQMNPGSDLLGSIQAVELD  131 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~-~v~~~D~-~~~l~~~-------~~n~~~n~~~~~~~~~~~~~~~~i~~~~~d  131 (205)
                      ..++.+|||||||+|.+++.+|+. ++ +|+++|+ +++++.+       ++|+..++..          ..++++...+
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~----------~~nV~~i~gD  309 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR----------LNNVEFSLKK  309 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC----------CCCEEEEESS
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC----------CCceEEEEcC
Confidence            346789999999999999999985 54 6999999 7788888       7777766420          1367776532


Q ss_pred             -cCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          132 -WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       132 -w~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                       +.....+.....+||+|+++.+++ .......++.+.+.|+|||.+++..+.
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn~~l~-~~d~~~~L~el~r~LKpGG~lVi~d~f  361 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGCKIISLKSL  361 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             ccccccccccccCCCCEEEEeCccc-cccHHHHHHHHHHhCCCCeEEEEeecc
Confidence             211111111135899999987774 356667788999999999999988543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.41  E-value=1.7e-12  Score=102.53  Aligned_cols=103  Identities=16%  Similarity=0.054  Sum_probs=83.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.+ +.            .++.+...|+.+. 
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~------------~~v~~~~~d~~~~-  160 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV------------ENVRFHLGKLEEA-  160 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC------------CCEEEEESCGGGC-
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC------------CCEEEEECchhhc-
Confidence            346789999999999999999987   568999999 88999999999877 42            3678888666543 


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                        .....+||+|+++     ......+++.+.++|+|||.+++..+..
T Consensus       161 --~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~  201 (258)
T 2pwy_A          161 --ELEEAAYDGVALD-----LMEPWKVLEKAALALKPDRFLVAYLPNI  201 (258)
T ss_dssp             --CCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred             --CCCCCCcCEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence              1224689999984     2455688999999999999999988754

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.41  E-value=1.2e-13  Score=121.67  Aligned_cols=104  Identities=16%  Similarity=0.141  Sum_probs=75.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|+++..+|++|++|+++|. +.+++.|+..+..++.            .++++...+..+... ...+
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~------------~~~~~~~~~~~~~~~-~~~~  132 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPD------------FAAEFRVGRIEEVIA-ALEE  132 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTT------------SEEEEEECCHHHHHH-HCCT
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCC------------CceEEEECCHHHHhh-hccC
Confidence            4579999999999999999999999999999 7899999998887642            256777754433211 1225


Q ss_pred             CCccEEEEcccccCCcChHhHHH--HHHHhhCCCcEEEEE
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQ--TIFALSGPKTTILVM  180 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~--~~~~~l~~~g~~~i~  180 (205)
                      ++||+|++.++++|..+...+..  .+.+.+++++..++.
T Consensus       133 ~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~  172 (569)
T 4azs_A          133 GEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVIL  172 (569)
T ss_dssp             TSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred             CCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeE
Confidence            68999999999998655443322  233445566655444

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.40  E-value=1.4e-12  Score=101.37  Aligned_cols=106  Identities=17%  Similarity=0.128  Sum_probs=81.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~  138 (205)
                      ++++|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.++.           ..++++...|..+.. ..
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~~d~~~~~~~~  137 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----------EHKIDLRLKPALETLDEL  137 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----------CCeEEEEEcCHHHHHHHH
Confidence            5689999999999999999986   568999999 8899999999988753           346888775543221 11


Q ss_pred             ccC--CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          139 KAV--APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       139 ~~~--~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...  ..+||+|++...   ......+++.+.++|+|||.+++....
T Consensus       138 ~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          138 LAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             HHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             HhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            111  168999998643   456788999999999999999886543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.40  E-value=2.6e-12  Score=100.77  Aligned_cols=108  Identities=14%  Similarity=0.046  Sum_probs=73.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+|||+|||||..+..+|.. +  .+|+++|+ +.+++.+...++..              .++.+...|......
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--------------~nv~~i~~Da~~~~~  139 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--------------PNIFPLLADARFPQS  139 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--------------TTEEEEECCTTCGGG
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------------CCeEEEEcccccchh
Confidence            446889999999999999999876 3  47999999 77775554443322              257777766554432


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .....++||+|+++-..  +.....+...+.++|+|||.++++...+.
T Consensus       140 ~~~~~~~~D~I~~d~a~--~~~~~il~~~~~~~LkpGG~lvisik~~~  185 (232)
T 3id6_C          140 YKSVVENVDVLYVDIAQ--PDQTDIAIYNAKFFLKVNGDMLLVIKARS  185 (232)
T ss_dssp             TTTTCCCEEEEEECCCC--TTHHHHHHHHHHHHEEEEEEEEEEEC---
T ss_pred             hhccccceEEEEecCCC--hhHHHHHHHHHHHhCCCCeEEEEEEccCC
Confidence            22234689999986332  33334455666779999999999865443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.40  E-value=8e-13  Score=109.16  Aligned_cols=100  Identities=15%  Similarity=0.097  Sum_probs=81.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..++. ++.+.+|+++|+ +++++.+++|++.|+.           .+++++...|..+..      
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l-----------~~~v~~~~~D~~~~~------  256 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKL-----------EHKIIPILSDVREVD------  256 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCGGGCC------
T ss_pred             CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECChHHhc------
Confidence            578999999999999999 886567999999 8899999999999964           346888886655432      


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .+||+|+++.+.+    ...+++.+.++|+|||.+++....+.
T Consensus       257 ~~fD~Vi~dpP~~----~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          257 VKGNRVIMNLPKF----AHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             CCEEEEEECCTTT----GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             CCCcEEEECCcHh----HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence            6899999965433    23788889999999999888766665

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.40  E-value=2.7e-12  Score=103.11  Aligned_cols=107  Identities=10%  Similarity=0.023  Sum_probs=84.0

Q ss_pred             CCeEEEeCCCc---cHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           65 GKRVIELGAGC---GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        65 ~~~VLdlGcGt---Gl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..+|||||||+   |.....+++.  +++|+++|+ +.|++.+++++..+              +++.+...|..+....
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~--------------~~v~~~~~D~~~~~~~  143 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD--------------PNTAVFTADVRDPEYI  143 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC--------------TTEEEEECCTTCHHHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC--------------CCeEEEEeeCCCchhh
Confidence            36899999999   9887766665  578999999 88999999887432              3678888776553211


Q ss_pred             --------ccCCCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          139 --------KAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       139 --------~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                              .....+||+|+++.++++...  ...+++.+.+.|+|||.++++.....
T Consensus       144 ~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~  200 (274)
T 2qe6_A          144 LNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT  200 (274)
T ss_dssp             HHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred             hccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence                    011247999999999988554  88999999999999999999987664

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.39  E-value=7.4e-13  Score=103.97  Aligned_cols=104  Identities=14%  Similarity=0.062  Sum_probs=80.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-c
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-~  138 (205)
                      ++++|||+|||+|..++.+++.   +.+|+++|. +++++.++++++.++.           .+++.+...|..+... .
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~~~~~  128 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL-----------ENKIFLKLGSALETLQVL  128 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCEEEEECCHHHHHHHH
Confidence            5789999999999999999987   568999999 8899999999988753           2357777755432110 0


Q ss_pred             c-----------cC-C-CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 K-----------AV-A-PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~-----------~~-~-~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .           .. . .+||+|++.   ........+++.+.++|+|||.+++..
T Consensus       129 ~~~~~~~~~~~~f~~~~~~fD~I~~~---~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          129 IDSKSAPSWASDFAFGPSSIDLFFLD---ADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             HHCSSCCGGGTTTCCSTTCEEEEEEC---SCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HhhcccccccccccCCCCCcCEEEEe---CCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            0           01 1 689999987   345667789999999999999999875

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.39  E-value=2e-12  Score=103.73  Aligned_cols=103  Identities=13%  Similarity=0.057  Sum_probs=82.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++.+|||+|||+|.+++.+++.   +.+|+++|. +++++.+++|++.++.           .+++.+...|+.+.  
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--  176 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----------IERVTIKVRDISEG--  176 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----------GGGEEEECCCGGGC--
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----------CCCEEEEECCHHHc--
Confidence            345789999999999999999987   468999999 8899999999988753           24677777666543  


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                        ....+||+|+++.     .....+++.+.++|+|||.+++..+..
T Consensus       177 --~~~~~~D~V~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (277)
T 1o54_A          177 --FDEKDVDALFLDV-----PDPWNYIDKCWEALKGGGRFATVCPTT  216 (277)
T ss_dssp             --CSCCSEEEEEECC-----SCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             --ccCCccCEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence              1235799999842     345688999999999999999988743

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.39  E-value=2.2e-12  Score=107.01  Aligned_cols=104  Identities=15%  Similarity=0.081  Sum_probs=85.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++.+|||+|||+|..+..+++.+  .+++++|++++++.+++|+..++.           .+++++...|+.+.  .   
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~---  246 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL-----------SDRVDVVEGDFFEP--L---  246 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--C---
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCC-----------CCceEEEeCCCCCC--C---
Confidence            56799999999999999999875  479999997799999999987743           34788988776542  1   


Q ss_pred             CCCccEEEEcccccCCcCh--HhHHHHHHHhhCCCcEEEEEEee
Q 028673          142 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      +..||+|+++.++++....  ..+++.+.+.|+|||.+++....
T Consensus       247 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          247 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            2359999999999876544  48999999999999999998765

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.39  E-value=3.1e-13  Score=104.47  Aligned_cols=107  Identities=12%  Similarity=0.092  Sum_probs=74.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+ ++|++.+.++++.+...        ...+++.+...|..+..   .
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~--------~~~~~v~~~~~d~~~l~---~   95 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAK--------GGLPNLLYLWATAERLP---P   95 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGG--------TCCTTEEEEECCSTTCC---S
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhh--------cCCCceEEEecchhhCC---C
Confidence            5779999999999999999998  568999999 78888765555432210        11246888887766543   2


Q ss_pred             CCCCccEEEEcc---ccc--CCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTD---VVY--AEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d---~~y--~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .... |.|...-   ..+  +......+++.+.++|+|||.++++..
T Consensus        96 ~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A           96 LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence            2233 6665221   111  223347899999999999999999764

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.39  E-value=1.4e-12  Score=105.42  Aligned_cols=118  Identities=14%  Similarity=0.120  Sum_probs=79.9

Q ss_pred             cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhcc
Q 028673           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQ  114 (205)
Q Consensus        37 ~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~  114 (205)
                      .+-.++.-|.+.+...       ....++++|||+|||||.++..+++.|+ +|+++|+ ++|++.+.++   +      
T Consensus        65 yvsrg~~Kl~~~l~~~-------~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~------  128 (291)
T 3hp7_A           65 YVSRGGLKLEKALAVF-------NLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D------  128 (291)
T ss_dssp             SSSTTHHHHHHHHHHT-------TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C------
T ss_pred             cccchHHHHHHHHHhc-------CCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C------
Confidence            3445677788887664       2345788999999999999999999986 7999999 7888774432   1      


Q ss_pred             CCCCCCCCCceEEE-EeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          115 MNPGSDLLGSIQAV-ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       115 ~~~~~~~~~~i~~~-~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                              .++... ..+............+||+|++. +.++  .+..++..+.++|+|||.+++..
T Consensus       129 --------~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d-~sf~--sl~~vL~e~~rvLkpGG~lv~lv  185 (291)
T 3hp7_A          129 --------DRVRSMEQYNFRYAEPVDFTEGLPSFASID-VSFI--SLNLILPALAKILVDGGQVVALV  185 (291)
T ss_dssp             --------TTEEEECSCCGGGCCGGGCTTCCCSEEEEC-CSSS--CGGGTHHHHHHHSCTTCEEEEEE
T ss_pred             --------cccceecccCceecchhhCCCCCCCEEEEE-eeHh--hHHHHHHHHHHHcCcCCEEEEEE
Confidence                    112211 11111111101112359999874 4443  56899999999999999998873

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.38  E-value=1.8e-13  Score=115.86  Aligned_cols=102  Identities=12%  Similarity=0.139  Sum_probs=79.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC--CCCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--EDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~--~~~~~  139 (205)
                      .++.+|||+|||+|..+..+++.|.+|+++|. +++++.++++    +.               ......+..  ....+
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~---------------~~~~~~~~~~~~~~l~  166 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GI---------------RVRTDFFEKATADDVR  166 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TC---------------CEECSCCSHHHHHHHH
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CC---------------CcceeeechhhHhhcc
Confidence            35789999999999999999999999999999 7788877764    21               111100110  01111


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...++||+|+++.++++..+...+++.+.++|+|||.+++..+.
T Consensus       167 ~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          167 RTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             HHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            22468999999999999999999999999999999999998764

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.38  E-value=1.6e-12  Score=102.01  Aligned_cols=117  Identities=17%  Similarity=0.182  Sum_probs=75.9

Q ss_pred             ccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccC
Q 028673           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (205)
Q Consensus        38 ~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (205)
                      +.+++..|.+.+...       ....++++|||+|||||..+..+++.|+ +|+++|+ ++|++.++++....       
T Consensus        18 vsrg~~kL~~~L~~~-------~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~-------   83 (232)
T 3opn_A           18 VSRGGLKLEKALKEF-------HLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERV-------   83 (232)
T ss_dssp             SSTTHHHHHHHHHHT-------TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTE-------
T ss_pred             cCCcHHHHHHHHHHc-------CCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccc-------
Confidence            334566777777654       2345688999999999999999999986 7999999 88988766543221       


Q ss_pred             CCCCCCCCceEEEE-eecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          116 NPGSDLLGSIQAVE-LDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       116 ~~~~~~~~~i~~~~-~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                                .... .+.............||.+.+ |+++.  .+..+++.+.++|+|||.+++..
T Consensus        84 ----------~~~~~~~~~~~~~~~~~~~~~d~~~~-D~v~~--~l~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A           84 ----------VVMEQFNFRNAVLADFEQGRPSFTSI-DVSFI--SLDLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             ----------EEECSCCGGGCCGGGCCSCCCSEEEE-CCSSS--CGGGTHHHHHHHSCTTCEEEEEE
T ss_pred             ----------cccccceEEEeCHhHcCcCCCCEEEE-EEEhh--hHHHHHHHHHHhccCCCEEEEEE
Confidence                      1110 011100000011113565543 44442  24889999999999999999864

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.38  E-value=1.5e-12  Score=101.23  Aligned_cols=108  Identities=16%  Similarity=0.206  Sum_probs=80.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-------EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGC-------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~-------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~  134 (205)
                      .++.+|||+|||+|..+..+++...       +|+++|. +++++.+++|++.++....       ...++.+...|..+
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~  151 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL-------KIDNFKIIHKNIYQ  151 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGG-------SSTTEEEEECCGGG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcccc-------ccCCEEEEECChHh
Confidence            3578999999999999999998754       8999999 8899999999987741000       01367887766554


Q ss_pred             CCCc-ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          135 EDHI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       135 ~~~~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .... .....+||+|+++.++.+      +++.+.++|+|||.+++..+.
T Consensus       152 ~~~~~~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          152 VNEEEKKELGLFDAIHVGASASE------LPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             CCHHHHHHHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccCccCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEEEEcc
Confidence            2100 012468999999877653      457888999999999999874

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.38  E-value=1.6e-12  Score=100.54  Aligned_cols=96  Identities=13%  Similarity=0.136  Sum_probs=78.9

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      +.+|||+|||+|..+..+++.    +++|. +++++.++++   +                +.+...+..+.   +....
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~---~----------------~~~~~~d~~~~---~~~~~  101 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR---G----------------VFVLKGTAENL---PLKDE  101 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT---T----------------CEEEECBTTBC---CSCTT
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc---C----------------CEEEEcccccC---CCCCC
Confidence            789999999999998888765    99999 7788888775   2                46666554433   23356


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      +||+|+++.++++......+++.+.++|+|||.++++...+..
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  144 (219)
T 1vlm_A          102 SFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRES  144 (219)
T ss_dssp             CEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred             CeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCcc
Confidence            8999999999999888999999999999999999999876644

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.38  E-value=4e-12  Score=100.28  Aligned_cols=116  Identities=7%  Similarity=-0.011  Sum_probs=80.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|..++.+++.+  .+|+++|+ +.+++.+++|++.+......    .....++.+...|..+......
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~----~~~~~nv~~~~~D~~~~l~~~~  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTAS----KHGFQNINVLRGNAMKFLPNFF  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-C----CSTTTTEEEEECCTTSCGGGTS
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhcccc----ccCCCcEEEEeccHHHHHHHhc
Confidence            56789999999999999999986  36999999 78999999999876321000    0012468888877654221112


Q ss_pred             CCCCccEEEEccc--ccCC------cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDV--VYAE------HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~--~y~~------~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ....+|.|+...+  .+..      -....+++.+.++|+|||.+++....
T Consensus       125 ~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~  175 (246)
T 2vdv_E          125 EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV  175 (246)
T ss_dssp             CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence            3568998886521  1110      01258999999999999999996543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.37  E-value=2.3e-12  Score=103.44  Aligned_cols=109  Identities=12%  Similarity=0.037  Sum_probs=81.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-  138 (205)
                      ++.+|||+|||+|..++.++..  + .+|+++|+ +.+++.+++|++.++.            .++++...|..+.... 
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------------~~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------------LNTIIINADMRKYKDYL  150 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCHHHHHHHH
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------------CcEEEEeCChHhcchhh
Confidence            6789999999999999999874  4 67999999 7899999999998864            3677777554432110 


Q ss_pred             ccCCCCccEEEEcccccCC------------------cChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          139 KAVAPPFDYIIGTDVVYAE------------------HLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~------------------~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .....+||+|++..+....                  .....+++.+.++|+|||.++++...-
T Consensus       151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            0014589999986444321                  345789999999999999999876543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.37  E-value=5.1e-12  Score=101.16  Aligned_cols=106  Identities=19%  Similarity=0.166  Sum_probs=82.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++.+|||+|||+|.+++.+++.   +.+|+++|. +++++.+++|++.+ +.          ...++.+...|..+..
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~----------~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ----------PPDNWRLVVSDLADSE  166 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS----------CCTTEEEECSCGGGCC
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC----------CCCcEEEEECchHhcC
Confidence            346789999999999999999985   568999999 88999999999876 30          0246777776654432


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                         ....+||+|+++.     .....+++.+.++|+|||.+++..+...
T Consensus       167 ---~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~  207 (280)
T 1i9g_A          167 ---LPDGSVDRAVLDM-----LAPWEVLDAVSRLLVAGGVLMVYVATVT  207 (280)
T ss_dssp             ---CCTTCEEEEEEES-----SCGGGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred             ---CCCCceeEEEECC-----cCHHHHHHHHHHhCCCCCEEEEEeCCHH
Confidence               2246899999842     3555889999999999999999887543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.37  E-value=1.5e-12  Score=102.33  Aligned_cols=104  Identities=13%  Similarity=0.013  Sum_probs=81.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~  138 (205)
                      ++++|||+|||+|..++.+++.   +.+|+++|+ +++++.+++|++.++.           .+++++...|..+.. ..
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~l~~l  138 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV-----------EHKINFIESDAMLALDNL  138 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence            5679999999999999999986   678999999 8899999999988754           346888876554321 11


Q ss_pred             cc---CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~---~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ..   ..++||+|++.   ........+++.+.++|+|||.+++..
T Consensus       139 ~~~~~~~~~fD~I~~d---~~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          139 LQGQESEGSYDFGFVD---ADKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             HHSTTCTTCEEEEEEC---SCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HhccCCCCCcCEEEEC---CchHHHHHHHHHHHHhcCCCeEEEEec
Confidence            00   14689999985   334567889999999999999988764

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.37  E-value=1e-11  Score=103.85  Aligned_cols=146  Identities=13%  Similarity=0.127  Sum_probs=96.2

Q ss_pred             EEEEEEcCeEEEEEeCCCCc-c---ccccccc----cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH
Q 028673           13 VINLEVLGHQLQFSQDPNSK-H---LGTTVWD----ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL   84 (205)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~-~---~g~~~W~----~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~   84 (205)
                      .+.+.+.+....+.-+..+. .   .|...+.    -...+++.+...       . ..++.+|||+|||+|.+++.++.
T Consensus       166 ~i~~~~~~d~~~~~ld~~g~~~l~~rgyr~~~~~a~l~~~la~~l~~~-------~-~~~~~~vLD~gCGsG~~~i~~a~  237 (373)
T 3tm4_A          166 IFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIEL-------A-ELDGGSVLDPMCGSGTILIELAL  237 (373)
T ss_dssp             EEEEEEETTEEEEEEESSCSSCTTCCTTCCSCCTTCCCHHHHHHHHHH-------H-TCCSCCEEETTCTTCHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEEccCCcccccCCcccccCCCCccHHHHHHHHHh-------h-cCCCCEEEEccCcCcHHHHHHHH
Confidence            34555666666666554332 1   1221111    133455555443       1 22578999999999999999999


Q ss_pred             hCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC----
Q 028673           85 LGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----  157 (205)
Q Consensus        85 ~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~----  157 (205)
                      .+.  +|+++|+ +.+++.+++|++.++.           .+++++...|..+..   ....+||+|++++++...    
T Consensus       238 ~~~~~~v~g~Dis~~~l~~A~~n~~~~gl-----------~~~i~~~~~D~~~~~---~~~~~fD~Ii~npPyg~r~~~~  303 (373)
T 3tm4_A          238 RRYSGEIIGIEKYRKHLIGAEMNALAAGV-----------LDKIKFIQGDATQLS---QYVDSVDFAISNLPYGLKIGKK  303 (373)
T ss_dssp             TTCCSCEEEEESCHHHHHHHHHHHHHTTC-----------GGGCEEEECCGGGGG---GTCSCEEEEEEECCCC------
T ss_pred             hCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------CCceEEEECChhhCC---cccCCcCEEEECCCCCcccCcc
Confidence            987  8999999 8899999999998864           346888886665532   334689999998775431    


Q ss_pred             cC----hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          158 HL----LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       158 ~~----~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..    +..+++.+.+.+  +|.+++...
T Consensus       304 ~~~~~ly~~~~~~l~r~l--~g~~~~i~~  330 (373)
T 3tm4_A          304 SMIPDLYMKFFNELAKVL--EKRGVFITT  330 (373)
T ss_dssp             CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred             hhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence            11    356778888888  444444443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.37  E-value=1.3e-11  Score=105.26  Aligned_cols=122  Identities=13%  Similarity=0.098  Sum_probs=88.4

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (205)
                      +..+.+++....       ....+.+|||+|||+|.+++.+++.+.+|+++|+ +++++.+++|++.|+.          
T Consensus       271 ~e~l~~~~~~~l-------~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~----------  333 (433)
T 1uwv_A          271 NQKMVARALEWL-------DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL----------  333 (433)
T ss_dssp             HHHHHHHHHHHH-------TCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHhh-------cCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC----------
Confidence            445555554431       2235679999999999999999999889999999 7899999999998864          


Q ss_pred             CCCceEEEEeecCCCCC-cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          121 LLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       121 ~~~~i~~~~~dw~~~~~-~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                        .++.+...|+.+... ......+||+|+++++....   ..+++.+.+ ++|++.+|++......
T Consensus       334 --~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc~p~tl  394 (433)
T 1uwv_A          334 --QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSCNPATL  394 (433)
T ss_dssp             --CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEESCHHHH
T ss_pred             --CceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEECChHHH
Confidence              368898887766321 12234589999996554322   356666654 6899999988654433

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.37  E-value=6.6e-12  Score=106.73  Aligned_cols=100  Identities=21%  Similarity=0.247  Sum_probs=79.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|.+++.+|+.+.+|+++|+ +++++.+++|++.|+.            . +++...|..+..     .
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl------------~-v~~~~~d~~~~~-----~  351 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV------------D-AEFEVASDREVS-----V  351 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC------------C-EEEEECCTTTCC-----C
T ss_pred             CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC------------c-EEEEECChHHcC-----c
Confidence            5679999999999999999999889999999 8899999999999864            2 677776655432     1


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .+||+|++.++ + ....+.+++.+.. ++|+|.+|++....
T Consensus       352 ~~fD~Vv~dPP-r-~g~~~~~~~~l~~-l~p~givyvsc~p~  390 (425)
T 2jjq_A          352 KGFDTVIVDPP-R-AGLHPRLVKRLNR-EKPGVIVYVSCNPE  390 (425)
T ss_dssp             TTCSEEEECCC-T-TCSCHHHHHHHHH-HCCSEEEEEESCHH
T ss_pred             cCCCEEEEcCC-c-cchHHHHHHHHHh-cCCCcEEEEECChH
Confidence            28999999765 2 2344567777754 89999999986543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.36  E-value=1.6e-12  Score=101.77  Aligned_cols=106  Identities=18%  Similarity=0.138  Sum_probs=81.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-CCc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~~~  138 (205)
                      ++++|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.++.           .+++++...+..+. ...
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~~d~~~~l~~l  140 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-----------AEKISLRLGPALATLEQL  140 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence            5679999999999999999986   568999999 7899999999988754           24578877554321 111


Q ss_pred             ccCC--CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          139 KAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       139 ~~~~--~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ....  ++||+|++...   ......+++.+.++|+|||.+++....
T Consensus       141 ~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          141 TQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             HTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             HhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            1112  68999997632   456788999999999999999886543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.36  E-value=7.5e-12  Score=92.56  Aligned_cols=117  Identities=15%  Similarity=0.090  Sum_probs=82.4

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcCcchHHHHHHHHHHhhhhhccCCC
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNP  117 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~  117 (205)
                      +...+.+.+...       ....++.+|||+|||+|..+..+++. +  .+|+++|.+++++.                 
T Consensus         6 ~~~~l~~~~~~~-------~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~-----------------   61 (180)
T 1ej0_A            6 AWFKLDEIQQSD-------KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI-----------------   61 (180)
T ss_dssp             HHHHHHHHHHHH-------CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-----------------
T ss_pred             HHHHHHHHHHHh-------CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc-----------------
Confidence            344555555443       12335779999999999999999987 3  68999999335432                 


Q ss_pred             CCCCCCceEEEEeecCCCCC---cc--cCCCCccEEEEcccccCCcCh-----------HhHHHHHHHhhCCCcEEEEEE
Q 028673          118 GSDLLGSIQAVELDWGNEDH---IK--AVAPPFDYIIGTDVVYAEHLL-----------EPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       118 ~~~~~~~i~~~~~dw~~~~~---~~--~~~~~fD~Ii~~d~~y~~~~~-----------~~ll~~~~~~l~~~g~~~i~~  181 (205)
                           .++.+...|+.+...   ..  ....+||+|+++.+++.....           ..+++.+.++|+|||.+++..
T Consensus        62 -----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (180)
T 1ej0_A           62 -----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             -----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                 146777766554320   00  234689999998888776554           688999999999999999987


Q ss_pred             eeccc
Q 028673          182 SLSMF  186 (205)
Q Consensus       182 ~~r~~  186 (205)
                      .....
T Consensus       137 ~~~~~  141 (180)
T 1ej0_A          137 FQGEG  141 (180)
T ss_dssp             ESSTT
T ss_pred             ecCCc
Confidence            65544

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.36  E-value=5.7e-12  Score=99.02  Aligned_cols=98  Identities=13%  Similarity=0.117  Sum_probs=73.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ++.+|||+|||+|..++.+++.      +++|+++|+ +++++.++     + .           ..++++...|..+..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~-~-----------~~~v~~~~gD~~~~~  143 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----S-D-----------MENITLHQGDCSDLT  143 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----G-G-----------CTTEEEEECCSSCSG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----c-c-----------CCceEEEECcchhHH
Confidence            4679999999999999999987      678999999 77877665     1 1           136888887766541


Q ss_pred             CcccC-CCCccEEEEcccccCCcChHhHHHHHHH-hhCCCcEEEEEE
Q 028673          137 HIKAV-APPFDYIIGTDVVYAEHLLEPLLQTIFA-LSGPKTTILVMF  181 (205)
Q Consensus       137 ~~~~~-~~~fD~Ii~~d~~y~~~~~~~ll~~~~~-~l~~~g~~~i~~  181 (205)
                      .+... ..+||+|++... +  .....+++.+.+ +|+|||.+++..
T Consensus       144 ~l~~~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          144 TFEHLREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             GGGGGSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             HHHhhccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            11212 237999987543 2  367788999997 999999999864

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.35  E-value=3.6e-12  Score=100.17  Aligned_cols=115  Identities=7%  Similarity=-0.042  Sum_probs=79.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||||||+|..++.+|+.  +..|+++|+ +.+++.++++++.......      ....++.+...|..+.-....
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~------~~~~nv~~~~~d~~~~l~~~~  119 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPA------GGFQNIACLRSNAMKHLPNFF  119 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTT------CCCTTEEEEECCTTTCHHHHC
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHh------cCCCeEEEEECcHHHhhhhhC
Confidence            4568999999999999999987  457999999 7899999988765211000      112468888876654211002


Q ss_pred             CCCCccEEEEcccccCCc--------ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          141 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ...+||.|+.+-+--+..        ..+.+++.+.++|+|||.+++.....
T Consensus       120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~  171 (235)
T 3ckk_A          120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL  171 (235)
T ss_dssp             CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            356899998752211100        12579999999999999999986543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.35  E-value=4.8e-12  Score=106.28  Aligned_cols=111  Identities=12%  Similarity=0.082  Sum_probs=80.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHH-------hhhhhccCCCCCCCCCceEEEEee
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEW-------NTSRISQMNPGSDLLGSIQAVELD  131 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~-------n~~~~~~~~~~~~~~~~i~~~~~d  131 (205)
                      ..++.+|||||||+|.+++.+|+. ++. |+++|+ +++++.+++|++.       ++.          ...++++...|
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl----------~~~rVefi~GD  240 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK----------KHAEYTLERGD  240 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB----------CCCEEEEEECC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC----------CCCCeEEEECc
Confidence            346789999999999999999865 664 999999 7899999887643       221          02468888866


Q ss_pred             cCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          132 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       132 w~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..+... ...-..||+|+++.++| .......+..+.+.|+|||++++.....
T Consensus       241 ~~~lp~-~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f~  291 (438)
T 3uwp_A          241 FLSEEW-RERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSKPFA  291 (438)
T ss_dssp             TTSHHH-HHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred             ccCCcc-ccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEeeccc
Confidence            554321 11013799999987765 4555666778889999999999875543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.34  E-value=1.2e-11  Score=94.64  Aligned_cols=98  Identities=27%  Similarity=0.384  Sum_probs=75.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++.+|||+|||+|..++.+++.|. +|+++|+ +.+++.+++|++.++.             ++++...|+.+.    
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~----  109 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-------------KFKVFIGDVSEF----  109 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------------SEEEEESCGGGC----
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CEEEEECchHHc----
Confidence            34678999999999999999999876 6999999 7899999999887742             577777665543    


Q ss_pred             cCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEE
Q 028673          140 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        +.+||+|+++++++..  .....+++.+.+++   |.+++..
T Consensus       110 --~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l---~~~~~~~  148 (207)
T 1wy7_A          110 --NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS---DVVYSIH  148 (207)
T ss_dssp             --CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC---SEEEEEE
T ss_pred             --CCCCCEEEEcCCCccccCCchHHHHHHHHHhc---CcEEEEE
Confidence              2489999998886654  34457788888877   4455444

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.34  E-value=9.5e-12  Score=104.08  Aligned_cols=106  Identities=13%  Similarity=0.130  Sum_probs=82.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..++++|||+| |+|.+++.+++.+.  +|+++|+ +++++.+++|++.++.            .++++...|..+.  +
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~------------~~v~~~~~D~~~~--l  234 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY------------EDIEIFTFDLRKP--L  234 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC------------CCEEEECCCTTSC--C
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CCEEEEEChhhhh--c
Confidence            34678999999 99999999999875  7999999 8899999999998864            2688888776652  1


Q ss_pred             cc-CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcE-EEEEEee
Q 028673          139 KA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT-ILVMFSL  183 (205)
Q Consensus       139 ~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~-~~i~~~~  183 (205)
                      +. ...+||+|+++.++... ....+++.+.+.|+|||+ ++++...
T Consensus       235 ~~~~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          235 PDYALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CTTTSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             hhhccCCccEEEECCCCchH-HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            11 24589999998764433 367899999999999994 4666554

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.33  E-value=3.5e-12  Score=99.03  Aligned_cols=105  Identities=21%  Similarity=0.240  Sum_probs=78.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .++.+|||+|||+|..+..+++. +  .+|+++|+ +.+++.+++|+..++....       ...++.+...|.....  
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~~~--  146 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL-------SSGRVQLVVGDGRMGY--  146 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH-------HTSSEEEEESCGGGCC--
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc-------CCCcEEEEECCcccCc--
Confidence            35789999999999999999976 4  58999999 7899999999887632000       0135778776654322  


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                       ....+||+|++..++.      .+++.+.++|+|||.++++...
T Consensus       147 -~~~~~fD~i~~~~~~~------~~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          147 -AEEAPYDAIHVGAAAP------VVPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             -GGGCCEEEEEECSBBS------SCCHHHHHTEEEEEEEEEEESC
T ss_pred             -ccCCCcCEEEECCchH------HHHHHHHHhcCCCcEEEEEEec
Confidence             2245899999986653      3446788999999999998764

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.31  E-value=2e-11  Score=93.02  Aligned_cols=94  Identities=22%  Similarity=0.272  Sum_probs=69.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .++.+|||+|||+|..++.+++.+. +|+++|+ +++++.+++|+. +                +++...|..+.     
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-~----------------~~~~~~d~~~~-----  107 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-G----------------VNFMVADVSEI-----  107 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-T----------------SEEEECCGGGC-----
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-C----------------CEEEECcHHHC-----
Confidence            3678999999999999999999876 6999999 789999998765 2                56777555442     


Q ss_pred             CCCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                       +++||+|++++++++...  ...+++.+.+.+   |.++++..
T Consensus       108 -~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~  147 (200)
T 1ne2_A          108 -SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGN  147 (200)
T ss_dssp             -CCCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEEE
T ss_pred             -CCCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEEc
Confidence             258999999988876533  346778887777   55665554

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.30  E-value=1.3e-11  Score=96.02  Aligned_cols=105  Identities=14%  Similarity=0.159  Sum_probs=78.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C-------CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL-G-------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  133 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~-g-------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~  133 (205)
                      .++.+|||+|||+|..+..+++. +       .+|+++|. +++++.+++|+..++....       ...++.+...|..
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~  155 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML-------DSGQLLIVEGDGR  155 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH-------HHTSEEEEESCGG
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcccc-------CCCceEEEECCcc
Confidence            35779999999999999999874 4       48999999 8899999999887641000       0135777776655


Q ss_pred             CCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          134 NEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       134 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      +..  . ...+||+|+++.++.+      +.+.+.+.|+|||.+++....
T Consensus       156 ~~~--~-~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          156 KGY--P-PNAPYNAIHVGAAAPD------TPTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             GCC--G-GGCSEEEEEECSCBSS------CCHHHHHTEEEEEEEEEEESC
T ss_pred             cCC--C-cCCCccEEEECCchHH------HHHHHHHHhcCCCEEEEEEec
Confidence            421  1 1368999999877654      337788999999999998764

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.29  E-value=1.6e-11  Score=102.53  Aligned_cols=114  Identities=14%  Similarity=0.081  Sum_probs=75.4

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (205)
                      +..+.+++....        ...+.+|||+|||+|.+++.+|+.+.+|+++|+ +++++.+++|++.|+.          
T Consensus       199 ~~~l~~~~~~~~--------~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~----------  260 (369)
T 3bt7_A          199 NIQMLEWALDVT--------KGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI----------  260 (369)
T ss_dssp             HHHHHHHHHHHT--------TTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHHh--------hcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence            345666665541        123678999999999999999998889999999 8899999999999864          


Q ss_pred             CCCceEEEEeecCCCCC-cccC------------CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          121 LLGSIQAVELDWGNEDH-IKAV------------APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       121 ~~~~i~~~~~dw~~~~~-~~~~------------~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        +++++...|..+... ....            ..+||+|+..++..  ...+.+    .+.++++|.++++.
T Consensus       261 --~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~--g~~~~~----~~~l~~~g~ivyvs  326 (369)
T 3bt7_A          261 --DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS--GLDSET----EKMVQAYPRILYIS  326 (369)
T ss_dssp             --CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT--CCCHHH----HHHHTTSSEEEEEE
T ss_pred             --CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc--ccHHHH----HHHHhCCCEEEEEE
Confidence              367777755432210 0000            13799999865533  223333    33444666655443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.29  E-value=6.4e-12  Score=100.88  Aligned_cols=117  Identities=20%  Similarity=0.191  Sum_probs=78.6

Q ss_pred             CCeEEEeCCCccH----HHHHHHHh-C-----CEEEEEcC-cchHHHHHHHHHHhhh----h-----hcc--CCCC----
Q 028673           65 GKRVIELGAGCGV----AGFGMALL-G-----CNVITTDQ-IEVLPLLKRNVEWNTS----R-----ISQ--MNPG----  118 (205)
Q Consensus        65 ~~~VLdlGcGtGl----~sl~~a~~-g-----~~v~~~D~-~~~l~~~~~n~~~n~~----~-----~~~--~~~~----  118 (205)
                      +.+|||+|||||-    +++.++.. +     .+|+++|+ ++|++.|++++-....    .     ...  ....    
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            4689999999997    66666654 3     47999999 7899999987521000    0     000  0000    


Q ss_pred             ----CCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          119 ----SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       119 ----~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                          .....++.+...|+.+.. .+ ..++||+|+|..++.+.+  ....+++.+++.|+|||.+++...-
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~~-~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE  254 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEKQ-YN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE  254 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCSS-CC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred             eeechhhcccCeEEecccCCCC-CC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence                000136888887776632 11 146899999998875433  3478999999999999999986543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.28  E-value=1e-11  Score=98.87  Aligned_cols=96  Identities=11%  Similarity=0.045  Sum_probs=74.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|..+..+++.  +.+|+++|. +++++.++++.                 .++.+...++.+.   +.
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~---~~  144 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------------PQVTFCVASSHRL---PF  144 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTSC---SB
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----------------CCcEEEEcchhhC---CC
Confidence            5789999999999999999987  779999999 77888887653                 1356666555443   23


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ..++||+|+++.+       ...++.+.++|+|||.+++..+....
T Consensus       145 ~~~~fD~v~~~~~-------~~~l~~~~~~L~pgG~l~~~~~~~~~  183 (269)
T 1p91_A          145 SDTSMDAIIRIYA-------PCKAEELARVVKPGGWVITATPGPRH  183 (269)
T ss_dssp             CTTCEEEEEEESC-------CCCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred             CCCceeEEEEeCC-------hhhHHHHHHhcCCCcEEEEEEcCHHH
Confidence            3568999998754       23578899999999999999876543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.28  E-value=5.4e-11  Score=100.17  Aligned_cols=151  Identities=14%  Similarity=0.158  Sum_probs=102.1

Q ss_pred             EEEEEEcCeEEEEEeCCCCccccccccc-------cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 028673           13 VINLEVLGHQLQFSQDPNSKHLGTTVWD-------ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (205)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~~W~-------~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~   85 (205)
                      .+.+.+.+...++..+..+...-.+-|.       -...||..+...       .....+.+|||.+||+|.+.+.+|..
T Consensus       150 ~i~v~l~~~~~~~~ld~sg~~L~krgyr~~~~~Apl~e~lAa~ll~l-------~~~~~~~~vlDp~CGSGt~~ieaa~~  222 (393)
T 3k0b_A          150 KLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLL-------TSWHPDRPFYDPVCGSGTIPIEAALI  222 (393)
T ss_dssp             CEEEEEETTEEEEEEESSSSCTTCCSTTTTSCSCSCCHHHHHHHHHH-------SCCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEecCCCcccccccccCCCCCCCcHHHHHHHHHH-------hCCCCCCeEEEcCCCCCHHHHHHHHH
Confidence            5666677777887777544322122232       123455555443       12235678999999999999999876


Q ss_pred             CC----------------------------------------EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 028673           86 GC----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (205)
Q Consensus        86 g~----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (205)
                      +.                                        +|+++|+ +.+++.++.|++.++.           .++
T Consensus       223 ~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl-----------~~~  291 (393)
T 3k0b_A          223 GQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGL-----------GDL  291 (393)
T ss_dssp             HTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTC-----------TTC
T ss_pred             hcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCC-----------CCc
Confidence            43                                        4999999 8899999999999865           346


Q ss_pred             eEEEEeecCCCCCcccCCCCccEEEEcccccCC----cChHhHHHHHHHhhC--CCcEEEEEEeecc
Q 028673          125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSG--PKTTILVMFSLSM  185 (205)
Q Consensus       125 i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~--~~g~~~i~~~~r~  185 (205)
                      +++...|..+..    ...+||+|++++++...    .....+.+.+.+.++  +|+.+++......
T Consensus       292 I~~~~~D~~~~~----~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~  354 (393)
T 3k0b_A          292 ITFRQLQVADFQ----TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYEL  354 (393)
T ss_dssp             SEEEECCGGGCC----CCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCTT
T ss_pred             eEEEECChHhCC----CCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            888887766543    13589999998886432    234456666655555  4888888776443

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.28  E-value=2.1e-12  Score=100.81  Aligned_cols=103  Identities=14%  Similarity=0.026  Sum_probs=69.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cc-hHHHH---HHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IE-VLPLL---KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~-~l~~~---~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ++.+|||+|||+|..++.+++.  +.+|+++|+ ++ |++.+   ++++..++.            .++.+...+..+..
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------------~~v~~~~~d~~~l~   91 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL------------SNVVFVIAAAESLP   91 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------------SSEEEECCBTTBCC
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------------CCeEEEEcCHHHhh
Confidence            4679999999999999999954  567999999 46 55555   666555432            46778776665542


Q ss_pred             CcccCCCCccEEEEcccccC-----CcChHhHHHHHHHhhCCCcEEEEE
Q 028673          137 HIKAVAPPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~-----~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .  .....+|.|.++.+...     ......+++.++++|+|||.++++
T Consensus        92 ~--~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~  138 (225)
T 3p2e_A           92 F--ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV  138 (225)
T ss_dssp             G--GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred             h--hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence            1  11134555555422111     112356899999999999999993

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.27  E-value=6.2e-11  Score=99.56  Aligned_cols=151  Identities=14%  Similarity=0.057  Sum_probs=102.0

Q ss_pred             EEEEEEcCeEEEEEeCCCCcc---cccccc----ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 028673           13 VINLEVLGHQLQFSQDPNSKH---LGTTVW----DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (205)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~---~g~~~W----~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~   85 (205)
                      .+.+.+.+..+++..+..+..   .|...-    +-...||..|...       .....+.+|||.|||+|.+.+.+|..
T Consensus       144 ~i~~~i~~~~~~~~lD~sG~~l~krgyr~~~~~Apl~e~lAa~ll~~-------~~~~~~~~vlDp~CGSGt~lieaa~~  216 (385)
T 3ldu_A          144 PIFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYL-------TPWKAGRVLVDPMCGSGTILIEAAMI  216 (385)
T ss_dssp             CEEEEEETTEEEEEEESCCSCTTCCSCCCC--CCCCCHHHHHHHHHT-------SCCCTTSCEEETTCTTCHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEecCCChhhhcccccCCCCCCCcHHHHHHHHHh-------hCCCCCCeEEEcCCCCCHHHHHHHHH
Confidence            455666777777777654321   221111    1133466666554       12335679999999999999999876


Q ss_pred             C----------------------------------------CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 028673           86 G----------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (205)
Q Consensus        86 g----------------------------------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (205)
                      +                                        .+|+++|+ +.+++.++.|+..++.           .+.
T Consensus       217 ~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl-----------~~~  285 (385)
T 3ldu_A          217 GINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGV-----------DEY  285 (385)
T ss_dssp             HTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTC-----------GGG
T ss_pred             HhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCC-----------CCc
Confidence            4                                        35999999 8899999999999865           346


Q ss_pred             eEEEEeecCCCCCcccCCCCccEEEEcccccCC----cChHhHHHHHHHhhCC--CcEEEEEEeecc
Q 028673          125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGP--KTTILVMFSLSM  185 (205)
Q Consensus       125 i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~--~g~~~i~~~~r~  185 (205)
                      +++...|..+..    ...+||+|++++++...    .....+.+.+.+.+++  |+.+++......
T Consensus       286 i~~~~~D~~~l~----~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~  348 (385)
T 3ldu_A          286 IEFNVGDATQFK----SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYED  348 (385)
T ss_dssp             EEEEECCGGGCC----CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCTT
T ss_pred             eEEEECChhhcC----cCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCHH
Confidence            888887766543    23589999998886432    2344566666666654  888888766444

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.27  E-value=2.8e-11  Score=99.66  Aligned_cols=117  Identities=15%  Similarity=0.101  Sum_probs=79.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++.+|||+|||+|.+++.+++. |  .+|+++|+ +++++.+++|+...+..+.. +.......++++...|..+...
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~l-n~~~~~~~~v~~~~~d~~~~~~  181 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL-SHVEEWPDNVDFIHKDISGATE  181 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTT-TCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccc-ccccccCCceEEEECChHHccc
Confidence            346789999999999999999987 5  57999999 88999999999864310000 0000012468888866654321


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                       .....+||+|+++..     ....+++.+.++|+|||.+++..+...
T Consensus       182 -~~~~~~fD~V~~~~~-----~~~~~l~~~~~~LkpgG~lv~~~~~~~  223 (336)
T 2b25_A          182 -DIKSLTFDAVALDML-----NPHVTLPVFYPHLKHGGVCAVYVVNIT  223 (336)
T ss_dssp             -------EEEEEECSS-----STTTTHHHHGGGEEEEEEEEEEESSHH
T ss_pred             -ccCCCCeeEEEECCC-----CHHHHHHHHHHhcCCCcEEEEEeCCHH
Confidence             112457999998532     233478999999999999998776443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.27  E-value=9.7e-12  Score=106.37  Aligned_cols=120  Identities=13%  Similarity=0.075  Sum_probs=85.9

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (205)
                      .++.+++..+..           .++.+|||+|||+|..++.+|..   +.+|+++|+ +.+++.+++|++.++.     
T Consensus        92 ~ss~l~~~~L~~-----------~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~-----  155 (456)
T 3m4x_A           92 PSAMIVGTAAAA-----------KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV-----  155 (456)
T ss_dssp             TTTHHHHHHHCC-----------CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHcCC-----------CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----
Confidence            456666666632           26789999999999999999875   357999999 7899999999999875     


Q ss_pred             CCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc----------------------ChHhHHHHHHHhhCC
Q 028673          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGP  173 (205)
Q Consensus       116 ~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~  173 (205)
                             .++.+...|..+...  ....+||.|++..+.....                      ....+++.+.++|+|
T Consensus       156 -------~nv~v~~~Da~~l~~--~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp  226 (456)
T 3m4x_A          156 -------SNAIVTNHAPAELVP--HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN  226 (456)
T ss_dssp             -------SSEEEECCCHHHHHH--HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE
T ss_pred             -------CceEEEeCCHHHhhh--hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                   356766644332211  1246899999865421111                      112678888899999


Q ss_pred             CcEEEEEEeec
Q 028673          174 KTTILVMFSLS  184 (205)
Q Consensus       174 ~g~~~i~~~~r  184 (205)
                      ||.++.+...-
T Consensus       227 GG~LvYsTCs~  237 (456)
T 3m4x_A          227 KGQLIYSTCTF  237 (456)
T ss_dssp             EEEEEEEESCC
T ss_pred             CcEEEEEEeec
Confidence            99998876533

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.26  E-value=1.2e-11  Score=102.48  Aligned_cols=102  Identities=17%  Similarity=0.125  Sum_probs=77.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+.+|||+|||+|..+..+++..  .+++++|.++++.  +++++..+           ..+++++...|..+.     .
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~-----------~~~~v~~~~~d~~~~-----~  245 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPD-----------VAGRWKVVEGDFLRE-----V  245 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGG-----------GTTSEEEEECCTTTC-----C
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccC-----------CCCCeEEEecCCCCC-----C
Confidence            46799999999999999999864  3689999966544  32222222           135788988776522     1


Q ss_pred             CCCccEEEEcccccCCcCh--HhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      + +||+|+++.++++....  ..+++.+++.|+|||++++.....
T Consensus       246 p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~  289 (348)
T 3lst_A          246 P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVV  289 (348)
T ss_dssp             C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCB
T ss_pred             C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence            2 89999999999887766  599999999999999999987543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.26  E-value=1.5e-10  Score=97.13  Aligned_cols=152  Identities=10%  Similarity=0.060  Sum_probs=103.5

Q ss_pred             cEEEEEEcCeEEEEEeCCCCcc---ccccc----cccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH
Q 028673           12 SVINLEVLGHQLQFSQDPNSKH---LGTTV----WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL   84 (205)
Q Consensus        12 ~~~~~~~~~~~~~i~q~~~~~~---~g~~~----W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~   84 (205)
                      ..+.+.+.+...++.-+..+..   .|...    -+-...||..+....       ....+..|||.+||+|.+.+.+|.
T Consensus       142 ~~i~v~~~~~~~~~~ld~sg~~LhkRgyr~~~~~Apl~e~LAaall~l~-------~~~~~~~llDp~CGSGt~lIEAa~  214 (384)
T 3ldg_A          142 FKIEISLLKDQARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILLS-------NWFPDKPFVDPTCGSGTFCIEAAM  214 (384)
T ss_dssp             CEEEEEEETTEEEEEEESSSSCTTCCSCCCC---CCCCHHHHHHHHHHT-------TCCTTSCEEETTCTTSHHHHHHHH
T ss_pred             EEEEEEEECCEEEEEEeccCCcccccCcccCCCCCCCcHHHHHHHHHHh-------CCCCCCeEEEeCCcCCHHHHHHHH
Confidence            3566667777777777654331   12111    111245666655431       223567899999999999999987


Q ss_pred             hCC----------------------------------------EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCC
Q 028673           85 LGC----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG  123 (205)
Q Consensus        85 ~g~----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  123 (205)
                      .+.                                        +|+++|+ +.+++.++.|++.++.           .+
T Consensus       215 ~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl-----------~~  283 (384)
T 3ldg_A          215 IGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGL-----------ED  283 (384)
T ss_dssp             HHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTC-----------TT
T ss_pred             HhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCC-----------CC
Confidence            643                                        4999999 8899999999999865           34


Q ss_pred             ceEEEEeecCCCCCcccCCCCccEEEEcccccCC----cChHhHHHHHHHhhCC--CcEEEEEEeecc
Q 028673          124 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGP--KTTILVMFSLSM  185 (205)
Q Consensus       124 ~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~--~g~~~i~~~~r~  185 (205)
                      .+++...|..+..    ...+||+|++++++...    .....+.+.+.+.+++  |+.+++......
T Consensus       284 ~I~~~~~D~~~l~----~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~  347 (384)
T 3ldg_A          284 VVKLKQMRLQDFK----TNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDTD  347 (384)
T ss_dssp             TEEEEECCGGGCC----CCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCTT
T ss_pred             ceEEEECChHHCC----ccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCHH
Confidence            6888887666543    13489999998886532    3355677777777765  899888877443

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.25  E-value=5.5e-11  Score=98.71  Aligned_cols=103  Identities=24%  Similarity=0.174  Sum_probs=82.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ..++|+|+|||+|..++.++++..  +++..|.|++++.++++++..+            .+++++...|.-+.     .
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~------------~~rv~~~~gD~~~~-----~  241 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE------------EEQIDFQEGDFFKD-----P  241 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--------------CCSEEEEESCTTTS-----C
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc------------cCceeeecCccccC-----C
Confidence            456899999999999999998854  6888899999999988765432            36899999765432     2


Q ss_pred             CCCccEEEEcccccCCcCh--HhHHHHHHHhhCCCcEEEEEEee
Q 028673          142 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .+.+|+|+...++|+..+.  ..+++.+++.|+|||+++|....
T Consensus       242 ~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          242 LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence            3468999999999986554  57899999999999999998754

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.25  E-value=9.6e-12  Score=100.42  Aligned_cols=79  Identities=18%  Similarity=0.164  Sum_probs=62.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.+++++..++.           .+++++...|..+.+    
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~D~~~~~----   90 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV-----------ASKLQVLVGDVLKTD----   90 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEESCTTTSC----
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcceeccc----
Confidence            346789999999999999999999999999999 7899999998765432           246788886665442    


Q ss_pred             CCCCccEEEEcccccC
Q 028673          141 VAPPFDYIIGTDVVYA  156 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~  156 (205)
                       .++||+|+++-+++.
T Consensus        91 -~~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           91 -LPFFDTCVANLPYQI  105 (285)
T ss_dssp             -CCCCSEEEEECCGGG
T ss_pred             -chhhcEEEEecCccc
Confidence             237999999765543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.25  E-value=1.1e-11  Score=103.77  Aligned_cols=100  Identities=22%  Similarity=0.133  Sum_probs=77.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-cchHHHHHHHHHHh---------------hhhhccCCCCCCCCCce
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWN---------------TSRISQMNPGSDLLGSI  125 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~-~~~l~~~~~n~~~n---------------~~~~~~~~~~~~~~~~i  125 (205)
                      ++.+|||+|||+|..|+.+++. + .+|+++|+ +++++.+++|++.|               +.            .++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl------------~~i  114 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE------------KTI  114 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS------------SEE
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC------------Cce
Confidence            5789999999999999999987 4 47999999 88999999999999               42            236


Q ss_pred             EEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          126 QAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       126 ~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ++...|..+..  .....+||+|+. |+.+   ....+++.+.+.++++|.++++.
T Consensus       115 ~v~~~Da~~~~--~~~~~~fD~I~l-DP~~---~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          115 VINHDDANRLM--AERHRYFHFIDL-DPFG---SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             EEEESCHHHHH--HHSTTCEEEEEE-CCSS---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcCcHHHHH--HhccCCCCEEEe-CCCC---CHHHHHHHHHHhcCCCCEEEEEe
Confidence            67665543321  111357999995 5543   34688899999999999888875

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.24  E-value=7.6e-12  Score=105.11  Aligned_cols=102  Identities=11%  Similarity=0.116  Sum_probs=78.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCc-eEEEEeecCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS-IQAVELDWGNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~-i~~~~~dw~~~~~~  138 (205)
                      ++.+|||++||+|..|+.+++.  |+ +|+++|+ +++++.+++|++.|+.           .++ +++...|..+..  
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl-----------~~~~v~v~~~Da~~~l--  118 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI-----------PEDRYEIHGMEANFFL--  118 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC-----------CGGGEEEECSCHHHHH--
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CCceEEEEeCCHHHHH--
Confidence            4789999999999999999985  54 5999999 8899999999999975           234 777765443221  


Q ss_pred             c-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          139 K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       139 ~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      . ....+||+|+..+  |  .....+++.+.+++++||.++++..
T Consensus       119 ~~~~~~~fD~V~lDP--~--g~~~~~l~~a~~~Lk~gGll~~t~t  159 (392)
T 3axs_A          119 RKEWGFGFDYVDLDP--F--GTPVPFIESVALSMKRGGILSLTAT  159 (392)
T ss_dssp             HSCCSSCEEEEEECC--S--SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHhhCCCCcEEEECC--C--cCHHHHHHHHHHHhCCCCEEEEEec
Confidence            1 1245799999854  4  3346789999999999998888873

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.24  E-value=5e-11  Score=90.71  Aligned_cols=114  Identities=16%  Similarity=0.163  Sum_probs=76.8

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCC
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD  120 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (205)
                      ++.-|.+.+...       ....++.+|||||||+|..++.+++++++|+++|+.++.         .            
T Consensus         9 a~~KL~ei~~~~-------~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---------~------------   60 (191)
T 3dou_A            9 AAFKLEFLLDRY-------RVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---------E------------   60 (191)
T ss_dssp             HHHHHHHHHHHH-------CCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---------C------------
T ss_pred             HHHHHHHHHHHc-------CCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---------c------------
Confidence            455566655543       123367899999999999999999998899999994321         0            


Q ss_pred             CCCceEEEEeecCCCCCcc----cCC----CCccEEEEcccccCCc-----------ChHhHHHHHHHhhCCCcEEEEEE
Q 028673          121 LLGSIQAVELDWGNEDHIK----AVA----PPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       121 ~~~~i~~~~~dw~~~~~~~----~~~----~~fD~Ii~~d~~y~~~-----------~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                       ..++.+...|..+.....    ...    ++||+|++........           ..+.+++.+.++|+|||.+++..
T Consensus        61 -~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~  139 (191)
T 3dou_A           61 -IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ  139 (191)
T ss_dssp             -CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence             125788887766543110    001    3899999965332211           13467778889999999998766


Q ss_pred             ee
Q 028673          182 SL  183 (205)
Q Consensus       182 ~~  183 (205)
                      ..
T Consensus       140 ~~  141 (191)
T 3dou_A          140 FQ  141 (191)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.23  E-value=1e-10  Score=100.80  Aligned_cols=105  Identities=15%  Similarity=0.161  Sum_probs=78.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+|||+|||+|..++.+|..   +.+|+++|+ +.+++.+++|++.++.            .++.+...|..+...  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~------------~nv~~~~~D~~~~~~--  182 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI------------SNVALTHFDGRVFGA--  182 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC------------CSEEEECCCSTTHHH--
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCCHHHhhh--
Confidence            5789999999999999999976   357999999 7899999999998864            357777755443221  


Q ss_pred             cCCCCccEEEEcccccC-------Cc---------------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYA-------EH---------------LLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~-------~~---------------~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ....+||.|++..+...       ++               ....+++.+.++|+|||+++++..
T Consensus       183 ~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          183 AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            12468999998433211       11               024678888999999999988764

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.23  E-value=2.5e-11  Score=103.97  Aligned_cols=117  Identities=16%  Similarity=0.107  Sum_probs=83.5

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (205)
                      .++.+++..+..           .++.+|||+|||+|..++.+|..   ..+|+++|+ +.+++.+++|++.++.     
T Consensus        88 ~ss~l~a~~L~~-----------~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~-----  151 (464)
T 3m6w_A           88 PSAQAVGVLLDP-----------KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA-----  151 (464)
T ss_dssp             TTTHHHHHHHCC-----------CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHhcCc-----------CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----
Confidence            456666666632           26789999999999999999976   257999999 7899999999999864     


Q ss_pred             CCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccc------cCCcC----------------hHhHHHHHHHhhCC
Q 028673          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV------YAEHL----------------LEPLLQTIFALSGP  173 (205)
Q Consensus       116 ~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~------y~~~~----------------~~~ll~~~~~~l~~  173 (205)
                             . +.+...|..+...  ....+||.|++..+.      .....                ...+++.+.++|+|
T Consensus       152 -------~-v~~~~~Da~~l~~--~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp  221 (464)
T 3m6w_A          152 -------P-LAVTQAPPRALAE--AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP  221 (464)
T ss_dssp             -------C-CEEECSCHHHHHH--HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE
T ss_pred             -------e-EEEEECCHHHhhh--hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                   2 5666544332211  124689999974332      11111                15788888999999


Q ss_pred             CcEEEEEEe
Q 028673          174 KTTILVMFS  182 (205)
Q Consensus       174 ~g~~~i~~~  182 (205)
                      ||.++++..
T Consensus       222 GG~LvysTC  230 (464)
T 3m6w_A          222 GGVLVYSTC  230 (464)
T ss_dssp             EEEEEEEES
T ss_pred             CcEEEEEec
Confidence            999988754

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.22  E-value=2.2e-11  Score=99.13  Aligned_cols=112  Identities=14%  Similarity=-0.042  Sum_probs=78.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++++|||+|||+|..+..+++.  ..+|+++|+ +.+++.+++++......        ....++++...|..+... ..
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--------~~~~~v~~~~~D~~~~~~-~~  165 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRS--------LADPRATVRVGDGLAFVR-QT  165 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--------GGCTTEEEEESCHHHHHH-SS
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcc--------cCCCcEEEEECcHHHHHH-hc
Confidence            5679999999999999999987  357999999 78999999987531110        012468888766543211 00


Q ss_pred             CCCCccEEEEcccccCCcCh----HhHHHHHHHhhCCCcEEEEEEeec
Q 028673          141 VAPPFDYIIGTDVVYAEHLL----EPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~----~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..++||+|++..+.......    ..+++.+.++|+|||.+++.....
T Consensus       166 ~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  213 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI  213 (304)
T ss_dssp             CTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            25689999996443321111    688999999999999999886544

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.22  E-value=3.8e-11  Score=92.33  Aligned_cols=88  Identities=13%  Similarity=0.025  Sum_probs=67.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      ++.+|||+|||+|..+..+   +.+|+++|.++.          +                +.+...+..+.   +...+
T Consensus        67 ~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----------~----------------~~~~~~d~~~~---~~~~~  114 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSI---RNPVHCFDLASL----------D----------------PRVTVCDMAQV---PLEDE  114 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHC---CSCEEEEESSCS----------S----------------TTEEESCTTSC---SCCTT
T ss_pred             CCCeEEEECCcCCHHHHHh---hccEEEEeCCCC----------C----------------ceEEEeccccC---CCCCC
Confidence            5679999999999988877   368999999432          2                23445444432   23356


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      +||+|+++.++++ .....+++.+.++|+|||.++++....
T Consensus       115 ~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~  154 (215)
T 2zfu_A          115 SVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS  154 (215)
T ss_dssp             CEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             CEeEEEEehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            8999999999974 788899999999999999999987654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.21  E-value=2.6e-10  Score=86.67  Aligned_cols=114  Identities=14%  Similarity=0.082  Sum_probs=74.6

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh----CCEEEEEcCcchHHHHHHHHHHhhhhhccCC
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL----GCNVITTDQIEVLPLLKRNVEWNTSRISQMN  116 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~----g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~  116 (205)
                      ++..|.+.+...       ....++.+|||||||+|..++.+++.    +.+|+++|++++..                 
T Consensus         6 ~~~kl~~~~~~~-------~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------------   61 (201)
T 2plw_A            6 AAYKLIELDNKY-------LFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------------   61 (201)
T ss_dssp             THHHHHHHHHHH-------CCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------------
T ss_pred             HHHHHHHHHHHc-------CCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------------
Confidence            455566655442       11235679999999999999999976    35799999944310                 


Q ss_pred             CCCCCCCceEEEEeecCCCCC----------------c------ccCCCCccEEEEcccccCCcC----h-------HhH
Q 028673          117 PGSDLLGSIQAVELDWGNEDH----------------I------KAVAPPFDYIIGTDVVYAEHL----L-------EPL  163 (205)
Q Consensus       117 ~~~~~~~~i~~~~~dw~~~~~----------------~------~~~~~~fD~Ii~~d~~y~~~~----~-------~~l  163 (205)
                           ..++.+...|+.+...                .      .....+||+|+++.+++....    .       ..+
T Consensus        62 -----~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~  136 (201)
T 2plw_A           62 -----IPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSI  136 (201)
T ss_dssp             -----CTTCEEEECCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHH
T ss_pred             -----CCCceEEEccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHH
Confidence                 1245666666554320                0      012458999999766554211    1       237


Q ss_pred             HHHHHHhhCCCcEEEEEEee
Q 028673          164 LQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       164 l~~~~~~l~~~g~~~i~~~~  183 (205)
                      ++.+.++|+|||.+++....
T Consensus       137 l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A          137 THFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             HHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHccCCCEEEEEEeC
Confidence            88889999999999986543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.21  E-value=1.5e-11  Score=101.02  Aligned_cols=110  Identities=14%  Similarity=0.035  Sum_probs=79.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHH--hhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .+++|||+|||+|..+..+++.  +.+|+++|+ +++++.+++|+..  ++.          ..+++++...|+.+..  
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~----------~~~~v~~~~~D~~~~l--  183 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY----------EDKRVNVFIEDASKFL--  183 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG----------GSTTEEEEESCHHHHH--
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc----------CCCcEEEEEccHHHHH--
Confidence            4579999999999999999987  467999999 8899999998765  221          0246888886654321  


Q ss_pred             ccCCCCccEEEEcccccC--CcC-h-HhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          139 KAVAPPFDYIIGTDVVYA--EHL-L-EPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~--~~~-~-~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ....++||+|+++..-..  ... . ..+++.+.++|+|||.+++......
T Consensus       184 ~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~  234 (321)
T 2pt6_A          184 ENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLW  234 (321)
T ss_dssp             HHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTT
T ss_pred             hhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcc
Confidence            112468999998532111  111 1 7899999999999999998765443

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.21  E-value=4.1e-11  Score=99.07  Aligned_cols=104  Identities=10%  Similarity=0.007  Sum_probs=79.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-------CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g-------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ++.+|||+|||+|.+++.+++..       .+|+++|+ +.+++.++.|+..++.             ++.+...|....
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-------------~~~i~~~D~l~~  196 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------------KMTLLHQDGLAN  196 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------------CCEEEESCTTSC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-------------CceEEECCCCCc
Confidence            45789999999999999888763       56999999 8899999999988753             356666554432


Q ss_pred             CCcccCCCCccEEEEcccccCCcC-----------------h-HhHHHHHHHhhCCCcEEEEEEeec
Q 028673          136 DHIKAVAPPFDYIIGTDVVYAEHL-----------------L-EPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       136 ~~~~~~~~~fD~Ii~~d~~y~~~~-----------------~-~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .    ...+||+|++++++.+...                 . ..+++.+.+.|+|||.++++.+..
T Consensus       197 ~----~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          197 L----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             C----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             c----ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            1    2468999999998522111                 1 257888899999999999998754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.21  E-value=4.7e-11  Score=95.91  Aligned_cols=109  Identities=11%  Similarity=-0.036  Sum_probs=78.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+++|||||||+|.++..+++. + .+|+++|+ +++++.+++|+......        -..+++++...|..+.  +..
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~--------~~~~rv~v~~~D~~~~--l~~  144 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK--------LDDPRVDVQVDDGFMH--IAK  144 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT--------TTSTTEEEEESCSHHH--HHT
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccc--------cCCCceEEEECcHHHH--Hhh
Confidence            4689999999999999999987 4 57999999 88999999988652110        0134688887553321  111


Q ss_pred             CCCCccEEEEcccccCCc-----ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ..++||+|++. +.+...     ....+++.+.++|+|||.+++....
T Consensus       145 ~~~~fD~Ii~d-~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          145 SENQYDVIMVD-STEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             CCSCEEEEEES-CSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCeeEEEEC-CCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            24689999994 433211     1267999999999999999887544

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.21  E-value=7.9e-11  Score=100.22  Aligned_cols=105  Identities=15%  Similarity=0.110  Sum_probs=78.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++.+|||+|||+|..++.++..+  .+|+++|+ +.+++.+++|++.++.             ++.+...|..+.... .
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-------------~~~~~~~D~~~~~~~-~  311 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-------------KATVKQGDGRYPSQW-C  311 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-------------CCEEEECCTTCTHHH-H
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-------------CeEEEeCchhhchhh-c
Confidence            57899999999999999999875  58999999 7899999999998854             356666555543210 1


Q ss_pred             CCCCccEEEEcccccC------CcC----------------hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYA------EHL----------------LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~------~~~----------------~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ...+||.|++..+...      ...                ...+++.+.++|+|||.++++..
T Consensus       312 ~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc  375 (429)
T 1sqg_A          312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  375 (429)
T ss_dssp             TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            2358999997543322      111                14778888999999999998764

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.20  E-value=5.5e-11  Score=96.63  Aligned_cols=76  Identities=21%  Similarity=0.218  Sum_probs=58.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.+++|+..++.            +++++...|..+..     
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~------------~~v~~~~~D~~~~~-----  103 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY------------NNLEVYEGDAIKTV-----  103 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC------------CCEEC----CCSSC-----
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC------------CceEEEECchhhCC-----
Confidence            36789999999999999999999999999999 7899999999886642            45777776665432     


Q ss_pred             CCCccEEEEccccc
Q 028673          142 APPFDYIIGTDVVY  155 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y  155 (205)
                      .++||+|+++.+++
T Consensus       104 ~~~~D~Vv~n~py~  117 (299)
T 2h1r_A          104 FPKFDVCTANIPYK  117 (299)
T ss_dssp             CCCCSEEEEECCGG
T ss_pred             cccCCEEEEcCCcc
Confidence            24899999976554

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.20  E-value=1.8e-10  Score=98.60  Aligned_cols=109  Identities=17%  Similarity=0.101  Sum_probs=80.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+|||+|||+|..++.++..  + .+|+++|+ +.+++.+++|++.++.            .++.+...|..+.... 
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~------------~~v~~~~~D~~~~~~~-  325 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI------------KIVKPLVKDARKAPEI-  325 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCTTCCSSS-
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEEEcChhhcchh-
Confidence            5789999999999999999975  3 57999999 7899999999998864            3577777665544211 


Q ss_pred             cCCCCccEEEEcccc------cCCcC---------h-------HhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          140 AVAPPFDYIIGTDVV------YAEHL---------L-------EPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~------y~~~~---------~-------~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ....+||+|++..+.      .....         .       ..+++.+.++|+|||.++++...-.
T Consensus       326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            123679999974322      21111         1       5688899999999999998765433

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.20  E-value=6.7e-11  Score=92.57  Aligned_cols=104  Identities=10%  Similarity=-0.033  Sum_probs=73.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ....+|||||||+|.+++.++ .+.+|+++|+ +.+++.++.++..++.             +..+...|.....    .
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~-------------~~~~~v~D~~~~~----~  165 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDW-------------DFTFALQDVLCAP----P  165 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC-------------EEEEEECCTTTSC----C
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC-------------CceEEEeecccCC----C
Confidence            356799999999999999988 5568999999 7899999999988853             4556664443332    3


Q ss_pred             CCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ..+||+|++..++++-+.  ....+ .+...|+++ .++++++.|.-
T Consensus       166 ~~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~-~vvVsfPtksl  210 (253)
T 3frh_A          166 AEAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTP-RMAVSFPTRSL  210 (253)
T ss_dssp             CCBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCS-EEEEEEECC--
T ss_pred             CCCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCC-CEEEEcChHHh
Confidence            568999999988776322  12333 555567766 46677774433

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.19  E-value=2.9e-11  Score=99.75  Aligned_cols=112  Identities=14%  Similarity=0.005  Sum_probs=80.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++|||||||+|..+..+++.  +.+|+++|+ +++++.+++|+.......        ..+++++...|+.+... ..
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl--------~~~rv~~~~~D~~~~l~-~~  190 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY--------EDPRVNLVIGDGVAFLK-NA  190 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--------GSTTEEEEESCHHHHHH-TS
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc--------CCCcEEEEECCHHHHHH-hc
Confidence            4579999999999999999987  458999999 789999999987531100        02468888866543210 01


Q ss_pred             CCCCccEEEEccc--ccCCcC--hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          141 VAPPFDYIIGTDV--VYAEHL--LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       141 ~~~~fD~Ii~~d~--~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ...+||+|++...  ......  ...+++.+.++|+|||.+++.....
T Consensus       191 ~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  238 (334)
T 1xj5_A          191 AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  238 (334)
T ss_dssp             CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            2468999998532  211121  4689999999999999999874433

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.18  E-value=3.4e-11  Score=95.14  Aligned_cols=100  Identities=11%  Similarity=0.082  Sum_probs=75.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ..+|||||||+|.+++.++..  .++|+++|+ +.+++.++.|+..|+.             ...+...|....    ..
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-------------~~~~~v~D~~~~----~p  195 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-------------PHRTNVADLLED----RL  195 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-------------CEEEEECCTTTS----CC
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-------------CceEEEeeeccc----CC
Confidence            468999999999999999876  357999999 7799999999999864             345555333322    24


Q ss_pred             CCCccEEEEcccccCCcCh--HhHHHHHHHhhCCCcEEEEEEee
Q 028673          142 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ..+||+++++.++.+-+..  ...+ .+...|+++| ++++++.
T Consensus       196 ~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~-vvVSfp~  237 (281)
T 3lcv_B          196 DEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPN-IVVTFPT  237 (281)
T ss_dssp             CSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSE-EEEEEEC
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCC-EEEeccc
Confidence            6789999999888764322  2344 6777788776 5677777

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.18  E-value=2e-10  Score=86.80  Aligned_cols=100  Identities=18%  Similarity=0.096  Sum_probs=67.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C----------CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEE-Ee
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL-G----------CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-EL  130 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~-g----------~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~-~~  130 (205)
                      .++.+|||+|||+|..++.+++. +          .+|+++|++++.         .             ..++.+. ..
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~-------------~~~~~~~~~~   78 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P-------------LEGATFLCPA   78 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C-------------CTTCEEECSC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c-------------CCCCeEEEec
Confidence            35789999999999999999987 4          679999994421         0             0135555 54


Q ss_pred             ecCCCCCc-----ccCCCCccEEEEcccccCCcCh-----------HhHHHHHHHhhCCCcEEEEEEeec
Q 028673          131 DWGNEDHI-----KAVAPPFDYIIGTDVVYAEHLL-----------EPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       131 dw~~~~~~-----~~~~~~fD~Ii~~d~~y~~~~~-----------~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      |+.+....     .....+||+|+++.+.......           ..+++.+.++|+|||.+++.....
T Consensus        79 d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           79 DVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             CTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             cCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            44332100     0113489999997544332211           478888999999999999886543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.17  E-value=5.1e-11  Score=96.66  Aligned_cols=109  Identities=13%  Similarity=0.021  Sum_probs=77.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+++|||+|||+|..+..+++.  ..+|+++|+ +++++.+++|+.......        ..+++++...|..+..  ..
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~--------~~~~v~~~~~D~~~~l--~~  159 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF--------DDPRAEIVIANGAEYV--RK  159 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHHG--GG
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc--------CCCceEEEECcHHHHH--hh
Confidence            4579999999999999999987  357999999 789999999986521100        0246888876543321  11


Q ss_pred             CCCCccEEEEcccccC-Cc-----ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYA-EH-----LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~-~~-----~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...+||+|++. +... ..     ....+++.+.++|+|||.+++....
T Consensus       160 ~~~~fD~Ii~d-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          160 FKNEFDVIIID-STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             CSSCEEEEEEE-C----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCceEEEEc-CCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            24689999984 2221 11     2368899999999999999987554

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.17  E-value=7.7e-11  Score=97.63  Aligned_cols=97  Identities=13%  Similarity=0.121  Sum_probs=76.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+.+|||+|||+|..+..+++.  +.+++++|++++++.+++    .              .++++...|..+.  .   
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~--------------~~v~~~~~d~~~~--~---  244 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG----S--------------NNLTYVGGDMFTS--I---  244 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC----B--------------TTEEEEECCTTTC--C---
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc----C--------------CCcEEEeccccCC--C---
Confidence            4579999999999999999987  458999999667665543    1              2478877665431  1   


Q ss_pred             CCCccEEEEcccccCCcChH--hHHHHHHHhhCC---CcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAEHLLE--PLLQTIFALSGP---KTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~--~ll~~~~~~l~~---~g~~~i~~~~r  184 (205)
                       +.||+|+++.++++....+  .+++.+++.|+|   ||++++.....
T Consensus       245 -p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~  291 (352)
T 1fp2_A          245 -PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI  291 (352)
T ss_dssp             -CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             -CCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence             2499999999999877666  999999999999   99999987654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.16  E-value=3.7e-11  Score=98.31  Aligned_cols=111  Identities=15%  Similarity=0.051  Sum_probs=79.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHH-hhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .+++|||||||+|..+..+++.  +.+|+++|+ +++++.+++++.. |....        ..+++++...|..+.  ..
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~--------~~~~v~~~~~D~~~~--l~  146 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF--------DDPRAVLVIDDARAY--LE  146 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG--------GCTTEEEEESCHHHH--HH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccc--------cCCceEEEEchHHHH--HH
Confidence            4579999999999999999987  457999999 7899999998764 21000        024678877554432  11


Q ss_pred             cCCCCccEEEEcccccC-C-cC-----hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          140 AVAPPFDYIIGTDVVYA-E-HL-----LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~-~-~~-----~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ...++||+|++...... . ..     ...+++.+.++|+|||.+++.....
T Consensus       147 ~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  198 (314)
T 1uir_A          147 RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI  198 (314)
T ss_dssp             HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEE
T ss_pred             hcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCc
Confidence            22568999999643322 0 11     4688999999999999999876543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.16  E-value=2.3e-11  Score=98.08  Aligned_cols=112  Identities=14%  Similarity=0.053  Sum_probs=79.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++++|||+|||+|..+..+++..  .+|+++|+ +++++.+++++..++...        ..+++++...|..+..  ..
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~--------~~~~v~~~~~D~~~~l--~~  147 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY--------EDKRVNVFIEDASKFL--EN  147 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG--------GSTTEEEEESCHHHHH--HH
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcccc--------CCCcEEEEECChHHHH--Hh
Confidence            46799999999999999999873  57999999 789999999876432110        0246788775543321  11


Q ss_pred             CCCCccEEEEcccccC--CcCh--HhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYA--EHLL--EPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~--~~~~--~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..++||+|++......  ....  ..+++.+.++|+|||.+++......
T Consensus       148 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~  196 (283)
T 2i7c_A          148 VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLW  196 (283)
T ss_dssp             CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcc
Confidence            2568999998422111  1122  6899999999999999998865433

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.14  E-value=6.5e-11  Score=95.34  Aligned_cols=116  Identities=16%  Similarity=0.065  Sum_probs=77.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+++|||||||+|..+..+++.+ .+|+++|+ +++++.+++++ ......... ......+++++...|..+.  ... 
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~-~~~~~~~~v~~~~~D~~~~--l~~-  149 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEA-MLNGKHEKAKLTIGDGFEF--IKN-  149 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHH-HHTTCCSSEEEEESCHHHH--HHH-
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccc-cccCCCCcEEEEECchHHH--hcc-
Confidence            46799999999999999999885 47999999 88999999987 320000000 0000134678877543221  111 


Q ss_pred             CCCccEEEEcccccC--CcC--hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYA--EHL--LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~--~~~--~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .++||+|++..+...  ...  ...+++.+.++|+|||.+++.....
T Consensus       150 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~  196 (281)
T 1mjf_A          150 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV  196 (281)
T ss_dssp             CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            468999998533211  111  3678999999999999998876543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.14  E-value=4.8e-10  Score=90.81  Aligned_cols=77  Identities=18%  Similarity=0.123  Sum_probs=62.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+ +++++.+++++...              +++++...|..+..   .
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~--------------~~v~vi~gD~l~~~---~  110 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELY--------------NNIEIIWGDALKVD---L  110 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHC--------------SSEEEEESCTTTSC---G
T ss_pred             CCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccC--------------CCeEEEECchhhCC---c
Confidence            446789999999999999999999999999999 88999999988722              46888887766543   2


Q ss_pred             CCCCccEEEEccccc
Q 028673          141 VAPPFDYIIGTDVVY  155 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y  155 (205)
                      ...+||.|+++.+++
T Consensus       111 ~~~~fD~Iv~NlPy~  125 (295)
T 3gru_A          111 NKLDFNKVVANLPYQ  125 (295)
T ss_dssp             GGSCCSEEEEECCGG
T ss_pred             ccCCccEEEEeCccc
Confidence            234799999886554

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.13  E-value=5.7e-11  Score=96.78  Aligned_cols=108  Identities=14%  Similarity=0.012  Sum_probs=76.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHH--hhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .+++|||||||+|..+..+++..  .+|+++|+ +++++.+++|+..  ++.          ..+++++...|..+.  +
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~----------~~~rv~v~~~Da~~~--l  162 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY----------SSSKLTLHVGDGFEF--M  162 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----------GCTTEEEEESCHHHH--H
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc----------CCCcEEEEECcHHHH--H
Confidence            46799999999999999999874  57999999 7899999999865  221          024678877554321  1


Q ss_pred             ccCCCCccEEEEcccccCC----cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          139 KAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ....++||+|++.......    -....+++.+.++|+|||.+++....
T Consensus       163 ~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          163 KQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             HTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            1124689999984322111    01246899999999999999887644

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.13  E-value=3.5e-11  Score=98.42  Aligned_cols=110  Identities=15%  Similarity=0.014  Sum_probs=75.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++|||||||+|..+..+++.  +.+|+++|+ +++++.+++++.......        ..+++++...|..+.  +..
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~--------~~~rv~~~~~D~~~~--l~~  177 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF--------SHPKLDLFCGDGFEF--LKN  177 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG--------GCTTEEEECSCHHHH--HHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcccc--------CCCCEEEEEChHHHH--HHh
Confidence            4579999999999999999987  357999999 789999999876431000        024677777554332  111


Q ss_pred             CCCCccEEEEcccccC---CcCh-HhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYA---EHLL-EPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~---~~~~-~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ..++||+|++...-..   .... ..+++.+.++|+|||.+++....
T Consensus       178 ~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~  224 (314)
T 2b2c_A          178 HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  224 (314)
T ss_dssp             CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             cCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence            3568999998532111   1112 68899999999999999987643

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.12  E-value=1.7e-10  Score=96.34  Aligned_cols=96  Identities=17%  Similarity=0.062  Sum_probs=75.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+.+|||+|||+|..+..+++.+.  +++++|++++++.+++                  ..++++...|..+.     .
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~~-----~  265 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP------------------LSGIEHVGGDMFAS-----V  265 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------CTTEEEEECCTTTC-----C
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh------------------cCCCEEEeCCcccC-----C
Confidence            457999999999999999998854  6888899666654442                  12478888666542     1


Q ss_pred             CCCccEEEEcccccCCcChH--hHHHHHHHhhCCCcEEEEEEee
Q 028673          142 APPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~--~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      + .||+|+++.++++....+  .+++.+++.|+|||.+++....
T Consensus       266 ~-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          266 P-QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             C-CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             C-CCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            2 399999999999877666  9999999999999999998653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.12  E-value=2.4e-11  Score=97.63  Aligned_cols=121  Identities=12%  Similarity=-0.016  Sum_probs=74.2

Q ss_pred             ccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCC
Q 028673           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNP  117 (205)
Q Consensus        38 ~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~  117 (205)
                      +-.++..|.+.+...        ...++.+|||||||+|..+..++++ .+|+++|+.+++..++++    ..      +
T Consensus        64 ~sR~a~KL~~i~~~~--------~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~m~~~a~~~----~~------~  124 (276)
T 2wa2_A           64 VSRGTAKLAWIDERG--------GVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYTLGTSGHEK----PR------L  124 (276)
T ss_dssp             -CHHHHHHHHHHHTT--------SCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEECCCCTTSCC----CC------C
T ss_pred             CchHHHHHHHHHHcC--------CCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECchhhhhhhhc----hh------h
Confidence            334455565555431        2336789999999999999999988 789999994453222111    00      0


Q ss_pred             CCCCCCceEEE--EeecCCCCCcccCCCCccEEEEcccccCCcCh----H---hHHHHHHHhhCCCc--EEEEEEee
Q 028673          118 GSDLLGSIQAV--ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL----E---PLLQTIFALSGPKT--TILVMFSL  183 (205)
Q Consensus       118 ~~~~~~~i~~~--~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~----~---~ll~~~~~~l~~~g--~~~i~~~~  183 (205)
                      ......++.+.  ..|..+.   +  +.+||+|++.-. +.....    .   .+++.+.++|+|||  .+++....
T Consensus       125 ~~~~~~~v~~~~~~~D~~~l---~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          125 VETFGWNLITFKSKVDVTKM---E--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCCTTGGGEEEECSCCGGGC---C--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             hhhcCCCeEEEeccCcHhhC---C--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            00011256666  5444332   2  568999999655 332221    1   36788889999999  88875433

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.11  E-value=2.1e-10  Score=96.93  Aligned_cols=111  Identities=14%  Similarity=0.141  Sum_probs=80.7

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (205)
                      ...+++++....       ...++.+|||+|||+|.+++.++++   +.+|+++|+ +++++.+      .         
T Consensus        24 P~~l~~~~~~~~-------~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------~---------   81 (421)
T 2ih2_A           24 PPEVVDFMVSLA-------EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------P---------   81 (421)
T ss_dssp             CHHHHHHHHHHC-------CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------T---------
T ss_pred             CHHHHHHHHHhh-------ccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------C---------
Confidence            345777776652       1234669999999999999999975   468999999 7777655      1         


Q ss_pred             CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC-----------------------------hHhHHHHHH
Q 028673          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----------------------------LEPLLQTIF  168 (205)
Q Consensus       118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~-----------------------------~~~ll~~~~  168 (205)
                            ++.+...|..+..    ..++||+|++++++.....                             ...+++.+.
T Consensus        82 ------~~~~~~~D~~~~~----~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~  151 (421)
T 2ih2_A           82 ------WAEGILADFLLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAV  151 (421)
T ss_dssp             ------TEEEEESCGGGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHH
T ss_pred             ------CCcEEeCChhhcC----ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHH
Confidence                  3567775554432    2358999999988765332                             125678888


Q ss_pred             HhhCCCcEEEEEEeec
Q 028673          169 ALSGPKTTILVMFSLS  184 (205)
Q Consensus       169 ~~l~~~g~~~i~~~~r  184 (205)
                      ++|+|||.+.+..+..
T Consensus       152 ~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          152 RLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             HHEEEEEEEEEEEEGG
T ss_pred             HHhCCCCEEEEEEChH
Confidence            9999999999998864

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.11  E-value=3.8e-11  Score=95.99  Aligned_cols=121  Identities=14%  Similarity=0.006  Sum_probs=75.1

Q ss_pred             ccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCC
Q 028673           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNP  117 (205)
Q Consensus        38 ~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~  117 (205)
                      +-.++..|.+.+...        ...++.+|||||||+|..+..+++. .+|+++|+.+++..++++....         
T Consensus        56 ~sR~a~KL~~i~~~~--------~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m~~~a~~~~~~~---------  117 (265)
T 2oxt_A           56 VSRGTAKLAWMEERG--------YVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYTLGVGGHEVPRIT---------  117 (265)
T ss_dssp             SSTHHHHHHHHHHHT--------SCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEECCCCSSCCCCCCC---------
T ss_pred             cchHHHHHHHHHHcC--------CCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECchhhhhhhhhhhhh---------
Confidence            344566666655442        2335789999999999999999988 7899999944532211110000         


Q ss_pred             CCCCCCceEEE--EeecCCCCCcccCCCCccEEEEcccccCCcCh----H---hHHHHHHHhhCCCc--EEEEEEee
Q 028673          118 GSDLLGSIQAV--ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL----E---PLLQTIFALSGPKT--TILVMFSL  183 (205)
Q Consensus       118 ~~~~~~~i~~~--~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~----~---~ll~~~~~~l~~~g--~~~i~~~~  183 (205)
                       .....++.+.  ..|..+.   +  +.+||+|++... +.....    .   .+++.+.++|+|||  .+++....
T Consensus       118 -~~~~~~v~~~~~~~D~~~l---~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          118 -ESYGWNIVKFKSRVDIHTL---P--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             -CBTTGGGEEEECSCCTTTS---C--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             -hccCCCeEEEecccCHhHC---C--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence             0001146666  5444432   2  468999999654 332221    1   26788889999999  88875543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.11  E-value=9e-11  Score=95.82  Aligned_cols=104  Identities=13%  Similarity=0.018  Sum_probs=76.4

Q ss_pred             CeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+|||||||+|.++..+++.  +.+|+++|+ +++++.+++++..+.            ..++++...|..+.-. ....
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~------------~~rv~v~~~Da~~~l~-~~~~  157 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR------------APRVKIRVDDARMVAE-SFTP  157 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC------------TTTEEEEESCHHHHHH-TCCT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC------------CCceEEEECcHHHHHh-hccC
Confidence            48999999999999999984  668999999 889999999875431            3468888755433210 1124


Q ss_pred             CCccEEEEcccccC---CcC--hHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTDVVYA---EHL--LEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~---~~~--~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .+||+|++. +...   ...  ...+++.++++|+|||.+++....
T Consensus       158 ~~fDvIi~D-~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          158 ASRDVIIRD-VFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             TCEEEEEEC-CSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCCEEEEC-CCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            689999984 2211   111  268999999999999998887764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.10  E-value=5e-10  Score=93.39  Aligned_cols=96  Identities=15%  Similarity=0.107  Sum_probs=74.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+.+|||+|||+|..+..+++.  +.+++++|++++++.++.                  .+++++...|..+.  .   
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~~--~---  259 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA------------------FSGVEHLGGDMFDG--V---  259 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------CTTEEEEECCTTTC--C---
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhh------------------cCCCEEEecCCCCC--C---
Confidence            4579999999999999999986  457999999777655442                  13688888776542  1   


Q ss_pred             CCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEee
Q 028673          142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      +.. |+|+++.++++...  ...+++.+++.|+|||++++....
T Consensus       260 p~~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          260 PKG-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             CCC-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CCC-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            123 99999999986554  448899999999999999998754

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.09  E-value=9.6e-11  Score=93.27  Aligned_cols=80  Identities=19%  Similarity=0.063  Sum_probs=61.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-c-------chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-I-------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~-------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ++.+|||+|||+|..++.+|+.|++|+++|+ +       ++++.+++|++.|+..           +++++...|..+.
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~-----------~ri~~~~~d~~~~  151 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA-----------ARINLHFGNAAEQ  151 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH-----------TTEEEEESCHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc-----------cCeEEEECCHHHH
Confidence            4679999999999999999999999999999 8       8899999999888652           3488888655432


Q ss_pred             CCcccCC--CCccEEEEccccc
Q 028673          136 DHIKAVA--PPFDYIIGTDVVY  155 (205)
Q Consensus       136 ~~~~~~~--~~fD~Ii~~d~~y  155 (205)
                      .. ....  .+||+|++++++.
T Consensus       152 l~-~~~~~~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          152 MP-ALVKTQGKPDIVYLDPMYP  172 (258)
T ss_dssp             HH-HHHHHHCCCSEEEECCCC-
T ss_pred             HH-hhhccCCCccEEEECCCCC
Confidence            10 0111  5899999976543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.07  E-value=2e-09  Score=87.76  Aligned_cols=89  Identities=18%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (205)
                      .++.+++..+..           .+|.+|||+|||+|..++.++..   ..+|+++|+ +.+++.+++|++.++.     
T Consensus        89 ~~s~l~~~~l~~-----------~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-----  152 (309)
T 2b9e_A           89 RASCLPAMLLDP-----------PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-----  152 (309)
T ss_dssp             TGGGHHHHHHCC-----------CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHhCC-----------CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----
Confidence            445555665532           25789999999999999999875   257999999 7899999999998864     


Q ss_pred             CCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEc
Q 028673          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT  151 (205)
Q Consensus       116 ~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~  151 (205)
                             .++.+...|..+.........+||.|++.
T Consensus       153 -------~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D  181 (309)
T 2b9e_A          153 -------SCCELAEEDFLAVSPSDPRYHEVHYILLD  181 (309)
T ss_dssp             -------CSEEEEECCGGGSCTTCGGGTTEEEEEEC
T ss_pred             -------CeEEEEeCChHhcCccccccCCCCEEEEc
Confidence                   36788887665543211111479999974

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.07  E-value=1.3e-10  Score=92.78  Aligned_cols=102  Identities=5%  Similarity=-0.096  Sum_probs=73.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+++|||+|||+|..+..+++.+.+|+++|+ +++++.+++++.......        ..+++++...|..+.     . 
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~--------~~~rv~~~~~D~~~~-----~-  137 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVK--------NNKNFTHAKQLLDLD-----I-  137 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHH--------TCTTEEEESSGGGSC-----C-
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhcccc--------CCCeEEEEechHHHH-----H-
Confidence            4579999999999999888877767999999 789999988764311000        024677765443322     1 


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .+||+|++..     .....+++.+.+.|+|||.+++.....
T Consensus       138 ~~fD~Ii~d~-----~dp~~~~~~~~~~L~pgG~lv~~~~~~  174 (262)
T 2cmg_A          138 KKYDLIFCLQ-----EPDIHRIDGLKRMLKEDGVFISVAKHP  174 (262)
T ss_dssp             CCEEEEEESS-----CCCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             hhCCEEEECC-----CChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            6899999851     223458999999999999998875544

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.07  E-value=4.7e-10  Score=95.85  Aligned_cols=106  Identities=14%  Similarity=0.022  Sum_probs=79.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---------------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEE
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA  127 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~  127 (205)
                      .+.+|||.|||||.+.+.+++.               +.+++++|+ +.+++.++.|+..++..          ..++.+
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~----------~~~~~i  240 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----------TDRSPI  240 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----------SSCCSE
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC----------cCCCCE
Confidence            5679999999999998888764               356999999 88999999999887541          013455


Q ss_pred             EEeecCCCCCcccCCCCccEEEEcccccCCcCh-----------------HhHHHHHHHhhCCCcEEEEEEee
Q 028673          128 VELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL-----------------EPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       128 ~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~-----------------~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...|.....    ...+||+|++++++......                 ..+++.+.++|+|||++.++.+.
T Consensus       241 ~~gD~l~~~----~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          241 VCEDSLEKE----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             EECCTTTSC----CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             eeCCCCCCc----ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            554433322    12489999999887653221                 36788899999999999988874

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.07  E-value=4e-10  Score=93.88  Aligned_cols=97  Identities=13%  Similarity=0.132  Sum_probs=75.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ...+|||+|||+|..+..+++.  +.+++++|++++++.++.                  .+++++...|..+.  .+  
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~D~~~~--~p--  258 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ------------------FPGVTHVGGDMFKE--VP--  258 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------CTTEEEEECCTTTC--CC--
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh------------------cCCeEEEeCCcCCC--CC--
Confidence            4579999999999999999986  457999999777655442                  13688888776542  11  


Q ss_pred             CCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                       .. |+|+++.++++..  ....+++.+++.|+|||++++.....
T Consensus       259 -~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~  301 (364)
T 3p9c_A          259 -SG-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCIL  301 (364)
T ss_dssp             -CC-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred             -CC-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence             23 9999999998653  45689999999999999999987643

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.06  E-value=7e-10  Score=88.09  Aligned_cols=79  Identities=15%  Similarity=0.166  Sum_probs=60.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|.++..+++.+++|+++|+ +++++.+++++...              +++++...|..+.+....
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~--------------~~v~~i~~D~~~~~~~~~   92 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQ--------------KNITIYQNDALQFDFSSV   92 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTC--------------TTEEEEESCTTTCCGGGS
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhC--------------CCcEEEEcchHhCCHHHh
Confidence            336789999999999999999999999999999 78999999887542              368888877766532111


Q ss_pred             -CCCCccEEEEccccc
Q 028673          141 -VAPPFDYIIGTDVVY  155 (205)
Q Consensus       141 -~~~~fD~Ii~~d~~y  155 (205)
                       ...+|| |++|.+++
T Consensus        93 ~~~~~~~-vv~NlPY~  107 (255)
T 3tqs_A           93 KTDKPLR-VVGNLPYN  107 (255)
T ss_dssp             CCSSCEE-EEEECCHH
T ss_pred             ccCCCeE-EEecCCcc
Confidence             134688 78876655

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.05  E-value=3.5e-10  Score=93.88  Aligned_cols=97  Identities=13%  Similarity=0.038  Sum_probs=75.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+.+|||+|||+|..+..+++..  .+++++|++.+++.+++                  ..++++...|..+.      
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~~------  248 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------------------NENLNFVGGDMFKS------  248 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------------------CSSEEEEECCTTTC------
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------------------CCCcEEEeCccCCC------
Confidence            45799999999999999999874  47999999766654432                  12478888665541      


Q ss_pred             CCCccEEEEcccccCCcChH--hHHHHHHHhhCC---CcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAEHLLE--PLLQTIFALSGP---KTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~--~ll~~~~~~l~~---~g~~~i~~~~r  184 (205)
                      .+.||+|+++.++++....+  .+++.+.+.|+|   ||++++.....
T Consensus       249 ~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~  296 (358)
T 1zg3_A          249 IPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI  296 (358)
T ss_dssp             CCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred             CCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence            12599999999999877755  999999999999   99999986543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.05  E-value=2.6e-10  Score=96.12  Aligned_cols=79  Identities=15%  Similarity=0.156  Sum_probs=62.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHh--hhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      |.+|||+|||+|..++.+++.+++|+++|. +++++.++.|++.+  +.            +++++...|..+.-.. ..
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl------------~~i~~i~~Da~~~L~~-~~  160 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG------------KDVNILTGDFKEYLPL-IK  160 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT------------CEEEEEESCGGGSHHH-HH
T ss_pred             CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC------------CcEEEEECcHHHhhhh-cc
Confidence            789999999999999999999999999999 88999999999987  53            4688888666543110 01


Q ss_pred             CCCccEEEEcccccC
Q 028673          142 APPFDYIIGTDVVYA  156 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~  156 (205)
                      ..+||+|++.++...
T Consensus       161 ~~~fDvV~lDPPrr~  175 (410)
T 3ll7_A          161 TFHPDYIYVDPARRS  175 (410)
T ss_dssp             HHCCSEEEECCEEC-
T ss_pred             CCCceEEEECCCCcC
Confidence            248999999665544

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.05  E-value=3e-09  Score=95.63  Aligned_cols=151  Identities=11%  Similarity=0.045  Sum_probs=100.2

Q ss_pred             EEEEEEcCeEEEEEeCCCCcccccccc-------ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 028673           13 VINLEVLGHQLQFSQDPNSKHLGTTVW-------DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (205)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~~W-------~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~   85 (205)
                      .+.+.+.+...++..+..+...-.+-|       +-...||..+....       ....+.+|||.+||+|.+.+.+|..
T Consensus       139 ~i~v~l~~~~~~l~ld~sg~~LhkRgyr~~~~~apl~e~LAa~ll~~~-------~~~~~~~llDP~CGSGt~lIeAa~~  211 (703)
T 3v97_A          139 RVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRS-------GWQPGTPLLDPMCGSGTLLIEAAML  211 (703)
T ss_dssp             EEEEEEETTEEEEEEESSSSCTTCCSSSCSSCCCSSCHHHHHHHHHHT-------TCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEecCCCccccccccccCCCCCCcHHHHHHHHHhh-------CCCCCCeEEecCCCCcHHHHHHHHH
Confidence            455566677777777654332222222       12235666665542       2235678999999999999988865


Q ss_pred             C--------------------------------------------CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673           86 G--------------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (205)
Q Consensus        86 g--------------------------------------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (205)
                      +                                            .+|+++|+ +.+++.++.|+..++.          
T Consensus       212 a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv----------  281 (703)
T 3v97_A          212 ATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGI----------  281 (703)
T ss_dssp             HTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTC----------
T ss_pred             HhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCC----------
Confidence            3                                            46999999 8899999999999875          


Q ss_pred             CCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC----cChHhHHHHHHHh---hCCCcEEEEEEe
Q 028673          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFAL---SGPKTTILVMFS  182 (205)
Q Consensus       121 ~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~---l~~~g~~~i~~~  182 (205)
                       .+.+++...|..+... +...++||+|++|+++-..    .....+.+.+.+.   +.|||.+++...
T Consensus       282 -~~~i~~~~~D~~~~~~-~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~  348 (703)
T 3v97_A          282 -GELITFEVKDVAQLTN-PLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA  348 (703)
T ss_dssp             -GGGEEEEECCGGGCCC-SCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             -CCceEEEECChhhCcc-ccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence             3458888877665431 1112379999999886432    2345556555544   358999888754

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.01  E-value=2e-10  Score=85.64  Aligned_cols=91  Identities=11%  Similarity=-0.001  Sum_probs=70.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+|.+|||+|||+              +.+|. ++|++.++++...                ++.+...|..+.......
T Consensus        11 ~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~----------------~~~~~~~d~~~~~~~~~~   60 (176)
T 2ld4_A           11 SAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN----------------EGRVSVENIKQLLQSAHK   60 (176)
T ss_dssp             CTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT----------------TSEEEEEEGGGGGGGCCC
T ss_pred             CCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc----------------CcEEEEechhcCccccCC
Confidence            3678999999996              23899 7899988876432                257777776654311113


Q ss_pred             CCCccEEEEcccccCC-cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          142 APPFDYIIGTDVVYAE-HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~-~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      +++||+|+++.++++. .....+++.++++|+|||.+++..+.
T Consensus        61 ~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  103 (176)
T 2ld4_A           61 ESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPV  103 (176)
T ss_dssp             SSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEccc
Confidence            5689999999999887 88899999999999999999997663

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.99  E-value=3.7e-10  Score=94.56  Aligned_cols=98  Identities=16%  Similarity=0.191  Sum_probs=71.0

Q ss_pred             CCCeEEEeCCC------ccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecC
Q 028673           64 KGKRVIELGAG------CGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  133 (205)
Q Consensus        64 ~~~~VLdlGcG------tGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~  133 (205)
                      ++.+|||||||      ||..++.+++.   +++|+++|+ ++|.        ..             ..++++...|..
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~-------------~~rI~fv~GDa~  274 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD-------------ELRIRTIQGDQN  274 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC-------------BTTEEEEECCTT
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc-------------CCCcEEEEeccc
Confidence            56799999999      77777777754   678999999 6652        11             246888886665


Q ss_pred             CCCCc---ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          134 NEDHI---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       134 ~~~~~---~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      +....   ....++||+|++.. .++.......++.+.++|||||.+++....
T Consensus       275 dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          275 DAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             CHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             ccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            53211   00146899999854 444556778899999999999999998654

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.99  E-value=4.7e-09  Score=82.69  Aligned_cols=77  Identities=12%  Similarity=0.070  Sum_probs=56.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+ +++++.+++|+...              +++++...|..+... . 
T Consensus        28 ~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------~~v~~~~~D~~~~~~-~-   91 (244)
T 1qam_A           28 LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH--------------DNFQVLNKDILQFKF-P-   91 (244)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC--------------CSEEEECCCGGGCCC-C-
T ss_pred             CCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC--------------CCeEEEEChHHhCCc-c-
Confidence            346789999999999999999999999999999 78999998876532              357888866654431 1 


Q ss_pred             CCCCccEEEEccccc
Q 028673          141 VAPPFDYIIGTDVVY  155 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y  155 (205)
                      ....| .|+++.+++
T Consensus        92 ~~~~~-~vv~nlPy~  105 (244)
T 1qam_A           92 KNQSY-KIFGNIPYN  105 (244)
T ss_dssp             SSCCC-EEEEECCGG
T ss_pred             cCCCe-EEEEeCCcc
Confidence            12244 466655443

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.98  E-value=8.6e-10  Score=97.45  Aligned_cols=101  Identities=12%  Similarity=-0.001  Sum_probs=73.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHH---hCC---EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMAL---LGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~---~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ..++++|||+|||+|.++..+++   .++   +|+++|.+.+...+++.++.|+.           .++|+++..+..+.
T Consensus       355 ~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~-----------~dkVtVI~gd~eev  423 (637)
T 4gqb_A          355 DTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEW-----------GSQVTVVSSDMREW  423 (637)
T ss_dssp             TTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTT-----------GGGEEEEESCTTTC
T ss_pred             cCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccC-----------CCeEEEEeCcceec
Confidence            44567899999999999555544   332   58999996677788888998854           57899999666655


Q ss_pred             CCcccCCCCccEEEEccccc---CCcChHhHHHHHHHhhCCCcEEE
Q 028673          136 DHIKAVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       136 ~~~~~~~~~fD~Ii~~d~~y---~~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                      +    .+++.|+||+--+=|   ++. ....+....++|||||.++
T Consensus       424 ~----LPEKVDIIVSEwMG~fLl~E~-mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          424 V----APEKADIIVSELLGSFADNEL-SPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             C----CSSCEEEEECCCCBTTBGGGC-HHHHHHHHGGGEEEEEEEE
T ss_pred             c----CCcccCEEEEEcCcccccccC-CHHHHHHHHHhcCCCcEEc
Confidence            3    357999998743322   233 3467777788899998754

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.98  E-value=9.6e-10  Score=89.52  Aligned_cols=115  Identities=15%  Similarity=-0.015  Sum_probs=70.4

Q ss_pred             cccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-----cchHHHHHHHHHHhhhhhc
Q 028673           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-----IEVLPLLKRNVEWNTSRIS  113 (205)
Q Consensus        39 W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-----~~~l~~~~~n~~~n~~~~~  113 (205)
                      -.++.-|.+.+...        ...++.+|||||||+|..+..++++ .+|+++|+     +.+++.+.    .+.    
T Consensus        65 sR~a~KL~~i~~~~--------~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~----~~~----  127 (305)
T 2p41_A           65 SRGSAKLRWFVERN--------LVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP----MST----  127 (305)
T ss_dssp             STHHHHHHHHHHTT--------SSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC----CCS----
T ss_pred             ccHHHHHHHHHHcC--------CCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH----hhh----
Confidence            34455565544431        1235789999999999999999988 57999998     32221110    000    


Q ss_pred             cCCCCCCCCCceEEEEe-ecCCCCCcccCCCCccEEEEcccccCCcC----hH---hHHHHHHHhhCCCcEEEEEEe
Q 028673          114 QMNPGSDLLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVVYAEHL----LE---PLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       114 ~~~~~~~~~~~i~~~~~-dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~----~~---~ll~~~~~~l~~~g~~~i~~~  182 (205)
                            ...+++.+... |....     ...+||+|++.-... ...    ..   .+++.+.++|+|||.+++...
T Consensus       128 ------~~~~~v~~~~~~D~~~l-----~~~~fD~V~sd~~~~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~  192 (305)
T 2p41_A          128 ------YGWNLVRLQSGVDVFFI-----PPERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL  192 (305)
T ss_dssp             ------TTGGGEEEECSCCTTTS-----CCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             ------cCCCCeEEEeccccccC-----CcCCCCEEEECCccc-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence                  00134666654 33322     245899999953332 111    11   467778899999998887544

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.98  E-value=9.8e-10  Score=87.84  Aligned_cols=109  Identities=14%  Similarity=0.106  Sum_probs=78.0

Q ss_pred             CeEEEeCCCc---cHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-
Q 028673           66 KRVIELGAGC---GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  138 (205)
Q Consensus        66 ~~VLdlGcGt---Gl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-  138 (205)
                      .+|||||||+   |.....+.+.  +++|+++|. +.|++.++.++..+.            ..++++...|..+.... 
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~------------~~~~~~v~aD~~~~~~~l  147 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP------------EGRTAYVEADMLDPASIL  147 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS------------SSEEEEEECCTTCHHHHH
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC------------CCcEEEEEecccChhhhh
Confidence            5899999997   4444444333  678999999 889999988765431            23688888877764211 


Q ss_pred             --ccCCCCcc-----EEEEcccccCCcC---hHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          139 --KAVAPPFD-----YIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       139 --~~~~~~fD-----~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                        ......||     .|+++.++++...   ...+++.+.+.|+|||.+++++..+..
T Consensus       148 ~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~  205 (277)
T 3giw_A          148 DAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEF  205 (277)
T ss_dssp             TCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTT
T ss_pred             cccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence              00012333     5888899988665   468999999999999999999877654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.98  E-value=7.5e-12  Score=98.76  Aligned_cols=101  Identities=13%  Similarity=0.118  Sum_probs=68.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++.+|||+|||+|.++..+++.+.+|+++|+ +++++.+++|+..              .+++++...|..+.. .. .
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~--------------~~~v~~~~~D~~~~~-~~-~   91 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL--------------NTRVTLIHQDILQFQ-FP-N   91 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT--------------CSEEEECCSCCTTTT-CC-C
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc--------------CCceEEEECChhhcC-cc-c
Confidence            35679999999999999999999999999999 7888888776541              135777776665543 11 1


Q ss_pred             CCCccEEEEcccccCCc-ChHh----------HH----HHHHHhhCCCcEEEEE
Q 028673          142 APPFDYIIGTDVVYAEH-LLEP----------LL----QTIFALSGPKTTILVM  180 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~-~~~~----------ll----~~~~~~l~~~g~~~i~  180 (205)
                      ..+| .|+++.+++... ....          .+    +.+.++|+|+|.+.+.
T Consensus        92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           92 KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence            2468 777776655422 1111          22    5566777777765544

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.95  E-value=2e-09  Score=86.19  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=59.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .++ +|||+|||+|.++..+++.+++|+++|+ +++++.+++++..               .++++...|..+.+. . .
T Consensus        46 ~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~---------------~~v~vi~~D~l~~~~-~-~  107 (271)
T 3fut_A           46 FTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG---------------LPVRLVFQDALLYPW-E-E  107 (271)
T ss_dssp             CCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT---------------SSEEEEESCGGGSCG-G-G
T ss_pred             CCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC---------------CCEEEEECChhhCCh-h-h
Confidence            356 9999999999999999999999999999 8899999887652               257888866655431 1 1


Q ss_pred             CCCccEEEEcccccC
Q 028673          142 APPFDYIIGTDVVYA  156 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~  156 (205)
                      ...+|.|++|-+++-
T Consensus       108 ~~~~~~iv~NlPy~i  122 (271)
T 3fut_A          108 VPQGSLLVANLPYHI  122 (271)
T ss_dssp             SCTTEEEEEEECSSC
T ss_pred             ccCccEEEecCcccc
Confidence            136899999876664

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.79  E-value=7.1e-08  Score=84.21  Aligned_cols=113  Identities=11%  Similarity=0.025  Sum_probs=80.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-----CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~-----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..+.+|+|.+||||.+.+.+++.     ..+++++|+ +.++..++.|+..++..          .+++.+...|.-..+
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----------~~~~~I~~gDtL~~d  289 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP----------IENQFLHNADTLDED  289 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC----------GGGEEEEESCTTTSC
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC----------cCccceEecceeccc
Confidence            35779999999999888777765     457999999 78999999999888641          124556664433221


Q ss_pred             CcccCCCCccEEEEcccccCCcC-----------------------hHhHHHHHHHhhC-CCcEEEEEEeecc
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHL-----------------------LEPLLQTIFALSG-PKTTILVMFSLSM  185 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~-----------------------~~~ll~~~~~~l~-~~g~~~i~~~~r~  185 (205)
                      .......+||+|++|+++-....                       .-.++..+.++|+ +||++.++.+...
T Consensus       290 ~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~  362 (542)
T 3lkd_A          290 WPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGV  362 (542)
T ss_dssp             SCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHH
T ss_pred             ccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchH
Confidence            01123468999999988743110                       0137888889999 9999988887543

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.78  E-value=9.7e-09  Score=89.76  Aligned_cols=112  Identities=12%  Similarity=-0.103  Sum_probs=77.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--------------------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--------------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL  122 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--------------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~  122 (205)
                      .+.+|||.+||||.+.+.+++.                    ..+++++|+ +.+++.++.|+..++....       ..
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~-------~~  241 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN-------LD  241 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB-------GG
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc-------cc
Confidence            5679999999999888877753                    136999999 7899999999988754100       00


Q ss_pred             CceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC--------------hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          123 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       123 ~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..+.+...|.-...  .....+||+|++++++-....              ...++..+.++|+|||++.++.+..
T Consensus       242 ~~~~I~~gDtL~~~--~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          242 HGGAIRLGNTLGSD--GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             GTBSEEESCTTSHH--HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             ccCCeEeCCCcccc--cccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            01444443322111  112458999999988754322              2368888889999999999988754

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.78  E-value=3.8e-08  Score=77.80  Aligned_cols=58  Identities=17%  Similarity=0.139  Sum_probs=46.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ..++.+|||+|||+|.++..+++.+ .+|+++|+ +.+++.++++ .               ..++++...|..+.
T Consensus        29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---------------~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---------------DERLEVINEDASKF   88 (249)
T ss_dssp             CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---------------CTTEEEECSCTTTC
T ss_pred             CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---------------CCCeEEEEcchhhC
Confidence            3467899999999999999999996 78999999 7799988876 1               13578887666554

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.78  E-value=5.4e-09  Score=83.03  Aligned_cols=84  Identities=18%  Similarity=0.193  Sum_probs=56.2

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC-CCCceEEEEeecCCCCCcccCCC
Q 028673           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-LLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      .+|||+|||+|..++.+|++|++|+++|. +.+...++.|++.........    . ...++++...|..+.-  .....
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~----~~l~~~i~~~~~D~~~~L--~~~~~  163 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIG----GWLQERLQLIHASSLTAL--TDITP  163 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTH----HHHHHHEEEEESCHHHHS--TTCSS
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhh----hhhhcCEEEEECCHHHHH--HhCcc
Confidence            79999999999999999999999999999 778777777765432100000    0 0135777775543321  11223


Q ss_pred             CccEEEEccccc
Q 028673          144 PFDYIIGTDVVY  155 (205)
Q Consensus       144 ~fD~Ii~~d~~y  155 (205)
                      +||+|+..+++.
T Consensus       164 ~fDvV~lDP~y~  175 (258)
T 2oyr_A          164 RPQVVYLDPMFP  175 (258)
T ss_dssp             CCSEEEECCCCC
T ss_pred             cCCEEEEcCCCC
Confidence            799999865443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.76  E-value=1.9e-08  Score=80.79  Aligned_cols=77  Identities=17%  Similarity=0.121  Sum_probs=56.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCE----EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCN----VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~----v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++.+|||+|||+|.++..+++.+.+    |+++|+ +++++.++++.  .              .++++...|..+.+.
T Consensus        41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~--------------~~v~~i~~D~~~~~~  104 (279)
T 3uzu_A           41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G--------------ELLELHAGDALTFDF  104 (279)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G--------------GGEEEEESCGGGCCG
T ss_pred             CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C--------------CCcEEEECChhcCCh
Confidence            35789999999999999999998877    999999 78999999883  2              257888877665432


Q ss_pred             cccCC-C--CccEEEEccccc
Q 028673          138 IKAVA-P--PFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~~~-~--~fD~Ii~~d~~y  155 (205)
                      ..... .  ..+.|++|-++|
T Consensus       105 ~~~~~~~~~~~~~vv~NlPY~  125 (279)
T 3uzu_A          105 GSIARPGDEPSLRIIGNLPYN  125 (279)
T ss_dssp             GGGSCSSSSCCEEEEEECCHH
T ss_pred             hHhcccccCCceEEEEccCcc
Confidence            11111 1  345677776554

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.76  E-value=1.5e-08  Score=89.96  Aligned_cols=102  Identities=17%  Similarity=0.107  Sum_probs=68.7

Q ss_pred             CCeEEEeCCCccHHHHHH---HH-hC---------C--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEE
Q 028673           65 GKRVIELGAGCGVAGFGM---AL-LG---------C--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV  128 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~---a~-~g---------~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~  128 (205)
                      ++.|||+|||+|.++..+   ++ .+         .  +|+++|. +.++..++.... |+.           .++|+++
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~-----------~d~VtVI  477 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW-----------KRRVTII  477 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT-----------TTCSEEE
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC-----------CCeEEEE
Confidence            468999999999997543   22 23         2  6999999 555544444433 643           5679999


Q ss_pred             EeecCCCCCc--ccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEE
Q 028673          129 ELDWGNEDHI--KAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       129 ~~dw~~~~~~--~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                      ..+..+....  ....++.|+||+--.-|.  .+..+..+..+.++|+|+|.++
T Consensus       478 ~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          478 ESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             ESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             eCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            9665544310  011579999998655443  3456678888889999999754

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.70  E-value=1.2e-07  Score=85.46  Aligned_cols=113  Identities=11%  Similarity=0.004  Sum_probs=76.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-----CEEEEEcC-cchHHHH--HHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLL--KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g-----~~v~~~D~-~~~l~~~--~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      .+.+|||.|||||.+.+.+++..     .+++++|+ +.+++.+  +.|+..|....        ......+...++...
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Llh--------Gi~~~~I~~dD~L~~  392 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVS--------SNNAPTITGEDVCSL  392 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCB--------TTBCCEEECCCGGGC
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhc--------CCCcceEEecchhcc
Confidence            57799999999999999888763     25999999 7899988  67766543210        011123333222221


Q ss_pred             CCcccCCCCccEEEEcccccCCc-----------------------------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          136 DHIKAVAPPFDYIIGTDVVYAEH-----------------------------LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       136 ~~~~~~~~~fD~Ii~~d~~y~~~-----------------------------~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      .  .....+||+|++|+++....                             ....+++.+.++|++||++.+..+....
T Consensus       393 ~--~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~L  470 (878)
T 3s1s_A          393 N--PEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYL  470 (878)
T ss_dssp             C--GGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHH
T ss_pred             c--ccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHh
Confidence            1  11246899999999884311                             1234677788889999999999886554

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.68  E-value=1.7e-08  Score=81.93  Aligned_cols=76  Identities=18%  Similarity=0.261  Sum_probs=58.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-c
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-K  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-~  139 (205)
                      ++.+|||+|||+|..++.+++.  +.+|+++|. +++++.+++|++.++             .++.+...++.+.... .
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-------------~~v~~v~~d~~~l~~~l~   92 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-------------DRVSLFKVSYREADFLLK   92 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-------------TTEEEEECCGGGHHHHHH
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEECCHHHHHHHHH
Confidence            5789999999999999999987  478999999 889999999987763             3688888766543211 1


Q ss_pred             c-CCCCccEEEEcc
Q 028673          140 A-VAPPFDYIIGTD  152 (205)
Q Consensus       140 ~-~~~~fD~Ii~~d  152 (205)
                      . ...+||.|++..
T Consensus        93 ~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           93 TLGIEKVDGILMDL  106 (301)
T ss_dssp             HTTCSCEEEEEEEC
T ss_pred             hcCCCCCCEEEEcC
Confidence            1 115799998743

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.67  E-value=3.4e-07  Score=69.93  Aligned_cols=101  Identities=15%  Similarity=0.033  Sum_probs=68.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC------
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE------  135 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~------  135 (205)
                      ..++|||+|||  ..++.+|+. +.+|+.+|. ++..+.+++|++.++..         ..+++++...+.++.      
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~---------~~~~I~~~~gda~~~~~wg~p   98 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA---------EGTEVNIVWTDIGPTGDWGHP   98 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC---------TTCEEEEEECCCSSBCGGGCB
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---------CCCceEEEEeCchhhhccccc
Confidence            35799999985  678888876 688999999 78999999999987530         035678877664322      


Q ss_pred             C------Ccc-------c--CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          136 D------HIK-------A--VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       136 ~------~~~-------~--~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .      ...       .  ...+||+|+.-.-     .....+..+..+|+|||.+++-
T Consensus        99 ~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A           99 VSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             SSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEET
T ss_pred             ccchhhhhHHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEe
Confidence            0      011       1  1368999998531     1124444456889999988543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.67  E-value=5e-08  Score=78.72  Aligned_cols=91  Identities=19%  Similarity=0.118  Sum_probs=60.9

Q ss_pred             CCCCCeEEEeCC------CccHHHHHHHHh-C--CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEE-EEee
Q 028673           62 KLKGKRVIELGA------GCGVAGFGMALL-G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-VELD  131 (205)
Q Consensus        62 ~~~~~~VLdlGc------GtGl~sl~~a~~-g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~-~~~d  131 (205)
                      ..++.+||||||      |+|.  ..++++ +  .+|+++|+.+.+         .               ++++ ...|
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v---------~---------------~v~~~i~gD  114 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV---------S---------------DADSTLIGD  114 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB---------C---------------SSSEEEESC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC---------C---------------CCEEEEECc
Confidence            346789999999      4466  334443 3  689999993321         1               3566 7766


Q ss_pred             cCCCCCcccCCCCccEEEEcccccC-----------CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          132 WGNEDHIKAVAPPFDYIIGTDVVYA-----------EHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       132 w~~~~~~~~~~~~fD~Ii~~d~~y~-----------~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +.+..    ...+||+|+++.....           ....+.+++.+.+.|+|||.+++...
T Consensus       115 ~~~~~----~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~  172 (290)
T 2xyq_A          115 CATVH----TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT  172 (290)
T ss_dssp             GGGCC----CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccCC----ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            65432    1358999998632111           12245789999999999999998654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.66  E-value=9.8e-09  Score=81.34  Aligned_cols=77  Identities=10%  Similarity=-0.009  Sum_probs=53.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCE--EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .++.+|||+|||+|.++. ++ .+.+  |+++|+ +++++.+++++..+              +++++...|..+.+...
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~--------------~~v~~i~~D~~~~~~~~   83 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLG--------------PKLTIYQQDAMTFNFGE   83 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTG--------------GGEEEECSCGGGCCHHH
T ss_pred             CCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccC--------------CceEEEECchhhCCHHH
Confidence            357799999999999999 65 4677  999999 78999988776432              25778776665432111


Q ss_pred             cC--CCCccEEEEccccc
Q 028673          140 AV--APPFDYIIGTDVVY  155 (205)
Q Consensus       140 ~~--~~~fD~Ii~~d~~y  155 (205)
                      ..  ....|.|++|-+++
T Consensus        84 ~~~~~~~~~~vvsNlPY~  101 (252)
T 1qyr_A           84 LAEKMGQPLRVFGNLPYN  101 (252)
T ss_dssp             HHHHHTSCEEEEEECCTT
T ss_pred             hhcccCCceEEEECCCCC
Confidence            00  12356777776655

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.61  E-value=7.8e-08  Score=84.03  Aligned_cols=105  Identities=10%  Similarity=0.041  Sum_probs=72.5

Q ss_pred             eEEEeCCCccHHHHHHHHh-----------------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEE
Q 028673           67 RVIELGAGCGVAGFGMALL-----------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV  128 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~-----------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~  128 (205)
                      +|||.+||||.+.+.+++.                 ..+++++|+ +.++..++.|+..++..           .++.+.
T Consensus       247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-----------~~i~i~  315 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID-----------FNFGKK  315 (544)
T ss_dssp             EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC-----------CBCCSS
T ss_pred             eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC-----------ccccee
Confidence            8999999999777766532                 346999999 88999999999888641           122212


Q ss_pred             EeecCCCCCcccCCCCccEEEEcccccCCc-----------------------C------hHhHHHHHHHhhCCCcEEEE
Q 028673          129 ELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----------------------L------LEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       129 ~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~-----------------------~------~~~ll~~~~~~l~~~g~~~i  179 (205)
                      ..|.-...  .....+||+|++|+++-...                       .      .-.++..+.++|+|||++.+
T Consensus       316 ~gDtL~~~--~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai  393 (544)
T 3khk_A          316 NADSFLDD--QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL  393 (544)
T ss_dssp             SCCTTTSC--SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccchhcCc--ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence            22211111  11246899999999875421                       0      01578888899999999988


Q ss_pred             EEeec
Q 028673          180 MFSLS  184 (205)
Q Consensus       180 ~~~~r  184 (205)
                      +.+..
T Consensus       394 VlP~g  398 (544)
T 3khk_A          394 LLANG  398 (544)
T ss_dssp             EEETH
T ss_pred             Eecch
Confidence            88743

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.51  E-value=3.9e-08  Score=78.53  Aligned_cols=119  Identities=8%  Similarity=-0.029  Sum_probs=87.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC-CCCccc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-EDHIKA  140 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~-~~~~~~  140 (205)
                      +.+..+||+-+|||.+|+.+.+.+.+++++|. ++.++.+++|++..              .++.+...|... ......
T Consensus        90 ~n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~--------------~~~~V~~~D~~~~L~~l~~  155 (283)
T 2oo3_A           90 INLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN--------------KKVYVNHTDGVSKLNALLP  155 (283)
T ss_dssp             HSSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT--------------SCEEEECSCHHHHHHHHCS
T ss_pred             hcCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcC--------------CcEEEEeCcHHHHHHHhcC
Confidence            35678999999999999999997778999999 88888888887542              357777755221 111112


Q ss_pred             CCCCccEEEEcccccC-CcChHhHHHHHHHh--hCCCcEEEEEEeeccchhHHHHHHhh
Q 028673          141 VAPPFDYIIGTDVVYA-EHLLEPLLQTIFAL--SGPKTTILVMFSLSMFSLTFFCWTRI  196 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~-~~~~~~ll~~~~~~--l~~~g~~~i~~~~r~~~~~~~~~~~~  196 (205)
                      ...+||+|+. |+-|. ....+.+++.+.+.  +.++|++++=||.-.........+++
T Consensus       156 ~~~~fdLVfi-DPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l  213 (283)
T 2oo3_A          156 PPEKRGLIFI-DPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKM  213 (283)
T ss_dssp             CTTSCEEEEE-CCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCccEEEE-CCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHH
Confidence            2357999999 77776 57888999888774  67999999999977765544344444

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.34  E-value=6.1e-07  Score=64.60  Aligned_cols=53  Identities=23%  Similarity=0.296  Sum_probs=41.9

Q ss_pred             cccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCcc-HHHHHHHH-hCCEEEEEcC-cchHH
Q 028673           35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCG-VAGFGMAL-LGCNVITTDQ-IEVLP   99 (205)
Q Consensus        35 g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtG-l~sl~~a~-~g~~v~~~D~-~~~l~   99 (205)
                      +.+.|+   .|++|+.++.         ..+.+|||+|||.| ..+..++. .|.+|++||+ +.+++
T Consensus        18 ~~~m~e---~LaeYI~~~~---------~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           18 GSHMWN---DLAVYIIRCS---------GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             CCHHHH---HHHHHHHHHS---------CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred             hhhHHH---HHHHHHHhcC---------CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence            445443   5999998762         23569999999999 59999997 8999999999 76555

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.26  E-value=5.6e-06  Score=65.69  Aligned_cols=125  Identities=17%  Similarity=0.044  Sum_probs=75.3

Q ss_pred             cccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhh
Q 028673           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNT  109 (205)
Q Consensus        33 ~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~  109 (205)
                      .+|..+-+++.-|.+.....        ....+.+|||||||+|-.+..++.. ++ +|+++|+ .++......     .
T Consensus        51 ~~~~YrSRaA~KL~ei~ek~--------~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-----~  117 (277)
T 3evf_A           51 DTGVAVSRGTAKLRWFHERG--------YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-----V  117 (277)
T ss_dssp             SSCBCSSTHHHHHHHHHHTT--------SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-----C
T ss_pred             cCCCccccHHHHHHHHHHhC--------CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-----c
Confidence            45777888999999988773        2335668999999999999998865 55 4888877 332000000     0


Q ss_pred             hhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcCh--H-----hHHHHHHHhhCCC-cEEEEEE
Q 028673          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL--E-----PLLQTIFALSGPK-TTILVMF  181 (205)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~--~-----~ll~~~~~~l~~~-g~~~i~~  181 (205)
                      .         ....++.....+.   +.......+||+|++ |.-.+....  +     .|++.+.+.|+|| |.+++-.
T Consensus       118 ~---------~~g~~ii~~~~~~---dv~~l~~~~~DlVls-D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KV  184 (277)
T 3evf_A          118 Q---------SLGWNIITFKDKT---DIHRLEPVKCDTLLC-DIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKV  184 (277)
T ss_dssp             C---------BTTGGGEEEECSC---CTTTSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             C---------cCCCCeEEEeccc---eehhcCCCCccEEEe-cCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence            0         0001222222211   112233568999999 443332221  1     3567788899999 9988844


Q ss_pred             ee
Q 028673          182 SL  183 (205)
Q Consensus       182 ~~  183 (205)
                      -.
T Consensus       185 f~  186 (277)
T 3evf_A          185 LA  186 (277)
T ss_dssp             SC
T ss_pred             cC
Confidence            33

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.25  E-value=5.5e-06  Score=68.62  Aligned_cols=84  Identities=14%  Similarity=0.117  Sum_probs=56.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+|.+||||||.+|-.+..++++|++|+++|..++-..+.    .+              +++++...|-..   .....
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~----~~--------------~~V~~~~~d~~~---~~~~~  268 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLM----DT--------------GQVTWLREDGFK---FRPTR  268 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHH----TT--------------TCEEEECSCTTT---CCCCS
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhc----cC--------------CCeEEEeCcccc---ccCCC
Confidence            3689999999999999999999999999999844333221    11              357777644332   22334


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhh
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALS  171 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l  171 (205)
                      .+||+|++ |+...   ...+...+.+.+
T Consensus       269 ~~~D~vvs-Dm~~~---p~~~~~l~~~wl  293 (375)
T 4auk_A          269 SNISWMVC-DMVEK---PAKVAALMAQWL  293 (375)
T ss_dssp             SCEEEEEE-CCSSC---HHHHHHHHHHHH
T ss_pred             CCcCEEEE-cCCCC---hHHhHHHHHHHH
Confidence            68999988 55543   334444444443

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.25  E-value=6e-06  Score=68.79  Aligned_cols=122  Identities=11%  Similarity=-0.084  Sum_probs=72.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHH--------h----C-----CEEEEEcCc-chHHHHHHHHHHhhhhhcc-CCCCCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGMAL--------L----G-----CNVITTDQI-EVLPLLKRNVEWNTSRISQ-MNPGSDLLGS  124 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~--------~----g-----~~v~~~D~~-~~l~~~~~n~~~n~~~~~~-~~~~~~~~~~  124 (205)
                      +.-+|+|||||+|..++.+..        .    |     .+|...|+| .-...+-+++......... .... .....
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~-~~~~~  130 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLA-ADGNR  130 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC----CCCB
T ss_pred             CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhcc-ccCCC
Confidence            346899999999988887731        1    1     258999994 4444444443321100000 0000 00001


Q ss_pred             eEEEEeecCCCCCcccCCCCccEEEEcccccCCc--------------------------------------ChHhHHHH
Q 028673          125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------------------LLEPLLQT  166 (205)
Q Consensus       125 i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------------------~~~~ll~~  166 (205)
                      .-+....-+.......++.+||+|+++-++++.+                                      ++..+++.
T Consensus       131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~  210 (374)
T 3b5i_A          131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA  210 (374)
T ss_dssp             CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            1122322344333334578999999999998854                                      23346788


Q ss_pred             HHHhhCCCcEEEEEEeeccc
Q 028673          167 IFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       167 ~~~~l~~~g~~~i~~~~r~~  186 (205)
                      .++.|+|||+++++...|..
T Consensus       211 ra~eL~pGG~mvl~~~gr~~  230 (374)
T 3b5i_A          211 RAAEVKRGGAMFLVCLGRTS  230 (374)
T ss_dssp             HHHHEEEEEEEEEEEEECCC
T ss_pred             HHHHhCCCCEEEEEEecCCC
Confidence            89999999999999988754

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.21  E-value=9.7e-06  Score=67.69  Aligned_cols=132  Identities=9%  Similarity=-0.032  Sum_probs=75.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--------------C---C--EEEEEcCcc-hHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 028673           65 GKRVIELGAGCGVAGFGMALL--------------G---C--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~--------------g---~--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (205)
                      .-+|+||||++|..++.+...              +   .  +|+..|+|. =...+-+++...........   .....
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~---g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN---GRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT---CCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc---cCCCC
Confidence            468999999999888877654              1   2  489999952 11111111111000000000   00011


Q ss_pred             eEEEEeecCCCCCcccCCCCccEEEEcccccCCcChH---------------------------------------hHHH
Q 028673          125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE---------------------------------------PLLQ  165 (205)
Q Consensus       125 i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~---------------------------------------~ll~  165 (205)
                      .-+....-+.......+..++|+|+++-++++....+                                       .+++
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~  209 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR  209 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2333433344433344578999999999998843322                                       1256


Q ss_pred             HHHHhhCCCcEEEEEEeeccch--------hHHHHHHhhhcc
Q 028673          166 TIFALSGPKTTILVMFSLSMFS--------LTFFCWTRITAD  199 (205)
Q Consensus       166 ~~~~~l~~~g~~~i~~~~r~~~--------~~~~~~~~~~~~  199 (205)
                      ...+.|+|||+++++...|...        .-...|..+..+
T Consensus       210 ~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~e  251 (384)
T 2efj_A          210 IHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIE  251 (384)
T ss_dssp             HHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHh
Confidence            6688899999999999877654        334556554433

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.17  E-value=3.6e-06  Score=66.73  Aligned_cols=113  Identities=13%  Similarity=-0.007  Sum_probs=62.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-------C-------CEEEEEcC-c---chHH-----------HHHHHHHHhhhhhcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-------G-------CNVITTDQ-I---EVLP-----------LLKRNVEWNTSRISQ  114 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-------g-------~~v~~~D~-~---~~l~-----------~~~~n~~~n~~~~~~  114 (205)
                      +..+|||+|+|+|+..+.+++.       +       .+++++|. |   +.+.           .++.+++.-......
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3468999999999988886643       2       25999998 6   2222           334443320000000


Q ss_pred             -C-CCCCCCCCceEEEEeecCCCCCcccCC----CCccEEEEcccccC---Cc-ChHhHHHHHHHhhCCCcEEEE
Q 028673          115 -M-NPGSDLLGSIQAVELDWGNEDHIKAVA----PPFDYIIGTDVVYA---EH-LLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       115 -~-~~~~~~~~~i~~~~~dw~~~~~~~~~~----~~fD~Ii~~d~~y~---~~-~~~~ll~~~~~~l~~~g~~~i  179 (205)
                       . ....+...++++...|..+.  ++...    .+||+|+. |.+-.   ++ ..+.+++.+.++|+|||++..
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~--l~~~~~~~~~~~D~ifl-D~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINEL--ISQLDDSLNQKVDAWFL-DGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHH--GGGSCGGGTTCEEEEEE-CSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHH--HhhcccccCCeEEEEEE-CCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence             0 00000112444555443331  11112    37999998 44322   22 245799999999999998774

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.14  E-value=4.6e-06  Score=67.37  Aligned_cols=46  Identities=20%  Similarity=0.201  Sum_probs=42.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHh
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (205)
                      .+|..|||++||+|..++.+++.|.+++++|+ +++++.+++|+...
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            36789999999999999999999999999999 78999999998764

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.13  E-value=2.6e-05  Score=62.76  Aligned_cols=114  Identities=14%  Similarity=0.095  Sum_probs=79.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHH-hhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++||=||-|.|...-.+.+.  ..+|+.+|+ +++++.+++-+.. +...        ...+++++...|....-  .
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~--------~~dpRv~v~~~Dg~~~l--~  152 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGS--------YDDPRFKLVIDDGVNFV--N  152 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTG--------GGCTTEEEEESCTTTTT--S
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccc--------cCCCcEEEEechHHHHH--h
Confidence            4579999999999888888876  347999999 8899999987643 2211        11357888886655442  2


Q ss_pred             cCCCCccEEEEc--ccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          140 AVAPPFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       140 ~~~~~fD~Ii~~--d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      ...++||+|+.-  |+.....  .-.++++.+++.|+|||.+..-.......
T Consensus       153 ~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~  204 (294)
T 3o4f_A          153 QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQ  204 (294)
T ss_dssp             CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSC
T ss_pred             hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccC
Confidence            345789999863  2221111  12478999999999999988766655443

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.04  E-value=2e-05  Score=65.32  Aligned_cols=124  Identities=17%  Similarity=0.144  Sum_probs=81.6

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (205)
                      .+|.+.+..|..           .+|.+|||++||.|-=++.++..+.  .|++.|+ +.-++.+++|+++.+....   
T Consensus       135 ~aS~l~~~~L~~-----------~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~---  200 (359)
T 4fzv_A          135 AASLLPVLALGL-----------QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEI---  200 (359)
T ss_dssp             GGGHHHHHHHCC-----------CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTT---
T ss_pred             HHHHHHHHHhCC-----------CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhh---
Confidence            456666655532           2688999999999988888888765  5999999 6678899999988754110   


Q ss_pred             CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEccc-------ccCCc-----------------ChHhHHHHHHHhhC
Q 028673          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-------VYAEH-----------------LLEPLLQTIFALSG  172 (205)
Q Consensus       117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~-------~y~~~-----------------~~~~ll~~~~~~l~  172 (205)
                         ....++.+...|.....  ......||.|+.-.+       +...+                 .-..++....++++
T Consensus       201 ---~~~~~v~v~~~D~~~~~--~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk  275 (359)
T 4fzv_A          201 ---RDGNQVRVTSWDGRKWG--ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATK  275 (359)
T ss_dssp             ---TTSSSEEEECCCGGGHH--HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEE
T ss_pred             ---ccCCceEEEeCchhhcc--hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence               11245666665433321  112468999986222       11110                 11257777888899


Q ss_pred             CCcEEEEEEe
Q 028673          173 PKTTILVMFS  182 (205)
Q Consensus       173 ~~g~~~i~~~  182 (205)
                      |||+++.+..
T Consensus       276 pGG~LVYsTC  285 (359)
T 4fzv_A          276 PGGHVVYSTC  285 (359)
T ss_dssp             EEEEEEEEES
T ss_pred             CCcEEEEEeC
Confidence            9999887754

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.96  E-value=1.4e-05  Score=66.21  Aligned_cols=112  Identities=9%  Similarity=-0.006  Sum_probs=73.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHh------------C------CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCce
Q 028673           65 GKRVIELGAGCGVAGFGMALL------------G------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSI  125 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~------------g------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i  125 (205)
                      .-+|+||||++|..++.+...            +      .+|+..|+ .+....+-+++.....           ..+.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~-----------~~~~  120 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND-----------VDGV  120 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS-----------CTTC
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcc-----------cCCC
Confidence            357999999999777665432            2      24999999 4556655554432100           0012


Q ss_pred             EEEEeecCCCCCcccCCCCccEEEEcccccCCcC---------------------------------hHhHHHHHHHhhC
Q 028673          126 QAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------------------LEPLLQTIFALSG  172 (205)
Q Consensus       126 ~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------------------------------~~~ll~~~~~~l~  172 (205)
                      -+....-+.......+..++|+|+++-++++...                                 +..+++..++-|+
T Consensus       121 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~  200 (359)
T 1m6e_X          121 CFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV  200 (359)
T ss_dssp             EEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC
T ss_pred             EEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333333444433445789999999999888332                                 2245888899999


Q ss_pred             CCcEEEEEEeeccch
Q 028673          173 PKTTILVMFSLSMFS  187 (205)
Q Consensus       173 ~~g~~~i~~~~r~~~  187 (205)
                      |||+++++...|...
T Consensus       201 pGG~mvl~~~gr~~~  215 (359)
T 1m6e_X          201 PGGRMVLTILGRRSE  215 (359)
T ss_dssp             TTCEEEEEEEECSSS
T ss_pred             CCceEEEEEecCCCC
Confidence            999999999877553

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.95  E-value=2.1e-05  Score=62.54  Aligned_cols=123  Identities=15%  Similarity=0.064  Sum_probs=73.7

Q ss_pred             cccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhh
Q 028673           35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSR  111 (205)
Q Consensus        35 g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~  111 (205)
                      |..+-+++.-|.+.....        ...++.+|||||||+|-.+.++++. ++. |+++|+ ..+.......   .   
T Consensus        69 g~YrSRAAfKL~ei~eK~--------~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~---~---  134 (282)
T 3gcz_A           69 GIAVSRGSAKLRWMEERG--------YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR---T---  134 (282)
T ss_dssp             SBCSSTHHHHHHHHHHTT--------SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC---C---
T ss_pred             CCEecHHHHHHHHHHHhc--------CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc---c---
Confidence            666778888898888763        2335679999999999999998854 554 899998 4321100000   0   


Q ss_pred             hccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcCh-----H--hHHHHHHHhhCCC--cEEEEEEe
Q 028673          112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL-----E--PLLQTIFALSGPK--TTILVMFS  182 (205)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~-----~--~ll~~~~~~l~~~--g~~~i~~~  182 (205)
                              ....++....   ...+.......++|+|++- .-.+....     .  .|++.+...|+||  |.+++-.-
T Consensus       135 --------~~g~~ii~~~---~~~dv~~l~~~~~DvVLSD-mApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF  202 (282)
T 3gcz_A          135 --------TLGWNLIRFK---DKTDVFNMEVIPGDTLLCD-IGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL  202 (282)
T ss_dssp             --------BTTGGGEEEE---CSCCGGGSCCCCCSEEEEC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             --------cCCCceEEee---CCcchhhcCCCCcCEEEec-CccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence                    0011222211   1111112235789999984 44433221     1  3577778889999  98877554


Q ss_pred             e
Q 028673          183 L  183 (205)
Q Consensus       183 ~  183 (205)
                      .
T Consensus       203 ~  203 (282)
T 3gcz_A          203 C  203 (282)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.91  E-value=0.00018  Score=62.70  Aligned_cols=105  Identities=13%  Similarity=0.006  Sum_probs=69.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---------------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEE
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA  127 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~  127 (205)
                      .+.+|+|-.||||.+-+.+...               ...+++.|+ +.+...++.|+..++..            ...+
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~------------~~~I  284 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE------------YPRI  284 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS------------CCEE
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc------------cccc
Confidence            5679999999999776665532               235999999 78999999999888641            1222


Q ss_pred             EEeecCCCCCc----ccCCCCccEEEEcccccCCc---------------C-hHhHHHHHHHhhC-------CCcEEEEE
Q 028673          128 VELDWGNEDHI----KAVAPPFDYIIGTDVVYAEH---------------L-LEPLLQTIFALSG-------PKTTILVM  180 (205)
Q Consensus       128 ~~~dw~~~~~~----~~~~~~fD~Ii~~d~~y~~~---------------~-~~~ll~~~~~~l~-------~~g~~~i~  180 (205)
                      ..   ++.-..    .....+||+|++|+++-...               . .-.++..+.+.|+       +||++.++
T Consensus       285 ~~---~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avV  361 (530)
T 3ufb_A          285 DP---ENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVV  361 (530)
T ss_dssp             EC---SCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEE
T ss_pred             cc---cccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEE
Confidence            22   332111    11235799999999873211               1 1135566666665       79999988


Q ss_pred             Eee
Q 028673          181 FSL  183 (205)
Q Consensus       181 ~~~  183 (205)
                      .+.
T Consensus       362 lP~  364 (530)
T 3ufb_A          362 VPN  364 (530)
T ss_dssp             EEH
T ss_pred             ecc
Confidence            874

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.87  E-value=2.8e-05  Score=61.53  Aligned_cols=47  Identities=19%  Similarity=0.116  Sum_probs=41.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhh
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNT  109 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~  109 (205)
                      .+|..|||.+||+|..++++.+.|.+++++|+ +.+++.+++|++.++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            36789999999999999999999999999999 789999999988764

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.86  E-value=6.7e-05  Score=60.11  Aligned_cols=105  Identities=12%  Similarity=-0.016  Sum_probs=70.0

Q ss_pred             CCeEEEeCCCccHHHHHHHHh-------CCEEEEEcC-cc--------------------------hHHHHHHHHHHhhh
Q 028673           65 GKRVIELGAGCGVAGFGMALL-------GCNVITTDQ-IE--------------------------VLPLLKRNVEWNTS  110 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~-------g~~v~~~D~-~~--------------------------~l~~~~~n~~~n~~  110 (205)
                      .++|||+|+..|..++.++..       +.+|+++|. +.                          .++.+++|++..+.
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            468999999999988887743       456999994 21                          35667888887653


Q ss_pred             hhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       111 ~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .          .+++++...+..+.-. .....+||+|..---.|  ......++.+..+|+|||.+++-..
T Consensus       187 ~----------~~~I~li~Gda~etL~-~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          187 L----------DEQVRFLPGWFKDTLP-TAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             C----------STTEEEEESCHHHHST-TCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             C----------cCceEEEEeCHHHHHh-hCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            1          2578888865543211 11246899997732122  2344678888889999997666443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.83  E-value=0.0003  Score=56.22  Aligned_cols=55  Identities=22%  Similarity=0.135  Sum_probs=43.3

Q ss_pred             ccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hCCE-EEEEcC
Q 028673           32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ   94 (205)
Q Consensus        32 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~-~g~~-v~~~D~   94 (205)
                      ..+|..+-.++.-|.+.....        ....+.+||||||++|-.+.+++. .|++ |+++|+
T Consensus        70 ~~~g~y~SR~~~KL~ei~~~~--------~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdv  126 (321)
T 3lkz_A           70 VTGGHPVSRGTAKLRWLVERR--------FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTK  126 (321)
T ss_dssp             CSSCCCSSTHHHHHHHHHHTT--------SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECC
T ss_pred             CcCCCccchHHHHHHHHHHhc--------CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEc
Confidence            345777888888888887763        234567999999999999997775 4665 999998

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.75  E-value=0.00019  Score=57.44  Aligned_cols=124  Identities=16%  Similarity=0.089  Sum_probs=75.6

Q ss_pred             cccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhh
Q 028673           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNT  109 (205)
Q Consensus        33 ~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~  109 (205)
                      .+|...-+++.-|.+.....        ...++++||||||++|-.+..+++. +. .|+++|+ ..+...... +.   
T Consensus        58 ~~g~yrSRaa~KL~ei~ek~--------l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~---  125 (300)
T 3eld_A           58 DVGISVSRGAAKIRWLHERG--------YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQ---  125 (300)
T ss_dssp             SSCCCSSTTHHHHHHHHHHT--------SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CC---
T ss_pred             cCCCccchHHHHHHHHHHhC--------CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cc---
Confidence            34667778899999888763        2336889999999999999999975 55 4999998 432100000 00   


Q ss_pred             hhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcCh-------HhHHHHHHHhhCCC-cEEEEEE
Q 028673          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL-------EPLLQTIFALSGPK-TTILVMF  181 (205)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~-------~~ll~~~~~~l~~~-g~~~i~~  181 (205)
                                ....++....   ...+.......++|+|++ |.--+....       ..|++.+...|+|| |.+++-.
T Consensus       126 ----------~~~~~iv~~~---~~~di~~l~~~~~DlVls-D~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv  191 (300)
T 3eld_A          126 ----------TLGWNIVKFK---DKSNVFTMPTEPSDTLLC-DIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKV  191 (300)
T ss_dssp             ----------BTTGGGEEEE---CSCCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred             ----------ccCCceEEee---cCceeeecCCCCcCEEee-cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence                      0001122111   111111223568999999 544443332       24677778889999 9887754


Q ss_pred             e
Q 028673          182 S  182 (205)
Q Consensus       182 ~  182 (205)
                      -
T Consensus       192 F  192 (300)
T 3eld_A          192 L  192 (300)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.74  E-value=0.0014  Score=50.90  Aligned_cols=115  Identities=16%  Similarity=0.079  Sum_probs=69.1

Q ss_pred             cccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hCCE-EEEEcC-cc-hH-HHHHHHHHHhh
Q 028673           35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ-IE-VL-PLLKRNVEWNT  109 (205)
Q Consensus        35 g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~-~g~~-v~~~D~-~~-~l-~~~~~n~~~n~  109 (205)
                      |..+-+++.-|.+.....        ....+.+||||||++|-.+.+++. .|++ |+++|+ .. -. ....+.     
T Consensus        57 g~yrSRa~~KL~ei~ek~--------~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s-----  123 (267)
T 3p8z_A           57 HHAVSRGSAKLQWFVERN--------MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMST-----  123 (267)
T ss_dssp             SCCSSTHHHHHHHHHHTT--------SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCC-----
T ss_pred             CCccchHHHHHHHHHHhc--------CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhh-----
Confidence            666777788888777664        234667999999999999997775 4665 999998 43 10 000000     


Q ss_pred             hhhccCCCCCCCCCceEEEEe-ecCCCCCcccCCCCccEEEEcccccCCcChH-------hHHHHHHHhhCCCcEEEE
Q 028673          110 SRISQMNPGSDLLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE-------PLLQTIFALSGPKTTILV  179 (205)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~-dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~-------~ll~~~~~~l~~~g~~~i  179 (205)
                                -.-+.+.+... |.   ...  ...++|+|+| |+--......       ..++.+.+.|++ +.+++
T Consensus       124 ----------~gwn~v~fk~gvDv---~~~--~~~~~Dtllc-DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          124 ----------YGWNIVKLMSGKDV---FYL--PPEKCDTLLC-DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             ----------TTTTSEEEECSCCG---GGC--CCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred             ----------cCcCceEEEeccce---eec--CCccccEEEE-ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence                      01123556553 32   211  2367999998 4443333221       245555677888 65555

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.58  E-value=0.00039  Score=54.59  Aligned_cols=117  Identities=12%  Similarity=0.000  Sum_probs=68.0

Q ss_pred             cccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--C----CEEEEEcC--cchHHHHHHH
Q 028673           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--G----CNVITTDQ--IEVLPLLKRN  104 (205)
Q Consensus        33 ~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g----~~v~~~D~--~~~l~~~~~n  104 (205)
                      .+|...-+++.-|.+.-...        -..++.+||||||+.|-.+.+++++  -    ..|+++|+  ..+...-   
T Consensus        50 ~~g~yRSRAayKL~EIdeK~--------likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~---  118 (269)
T 2px2_A           50 VGGHPVSRGTAKLRWLVERR--------FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQS---  118 (269)
T ss_dssp             CCSCCSSTHHHHHHHHHHTT--------SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCS---
T ss_pred             cCCCcccHHHHHHHHHHHcC--------CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccC---
Confidence            45666777788887766552        2335789999999999999999987  2    23555562  1110000   


Q ss_pred             HHHhhhhhccCCCCCCCCCceEEEEe-ecCCCCCcccCCCCccEEEEcccccCCcCh----H---hHHHHHHHhhCCCc-
Q 028673          105 VEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVVYAEHLL----E---PLLQTIFALSGPKT-  175 (205)
Q Consensus       105 ~~~n~~~~~~~~~~~~~~~~i~~~~~-dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~----~---~ll~~~~~~l~~~g-  175 (205)
                         .+.            .-+.+... |..+.     ...++|+|++ |.--.....    .   ..++.+.+.|+||| 
T Consensus       119 ---~Gv------------~~i~~~~G~Df~~~-----~~~~~DvVLS-DMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~  177 (269)
T 2px2_A          119 ---YGW------------NIVTMKSGVDVFYK-----PSEISDTLLC-DIGESSPSAEIEEQRTLRILEMVSDWLSRGPK  177 (269)
T ss_dssp             ---TTG------------GGEEEECSCCGGGS-----CCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             ---CCc------------eEEEeeccCCccCC-----CCCCCCEEEe-CCCCCCCccHHHHHHHHHHHHHHHHHhhcCCc
Confidence               000            11344333 44332     2458999997 443332221    1   14566677899999 


Q ss_pred             EEEEEE
Q 028673          176 TILVMF  181 (205)
Q Consensus       176 ~~~i~~  181 (205)
                      .+++-.
T Consensus       178 ~FvvKV  183 (269)
T 2px2_A          178 EFCIKI  183 (269)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666643

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.44  E-value=8.1e-05  Score=59.38  Aligned_cols=40  Identities=25%  Similarity=0.207  Sum_probs=36.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHH
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR  103 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~  103 (205)
                      ++..+||.+||.|--+..+++++.+|+++|. +++++.+++
T Consensus        22 ~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~   62 (285)
T 1wg8_A           22 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG   62 (285)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            5789999999999999999988889999999 889988876

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.35  E-value=0.00024  Score=59.25  Aligned_cols=74  Identities=22%  Similarity=0.168  Sum_probs=52.6

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc---
Q 028673           66 KRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA---  140 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~---  140 (205)
                      .+|+||.||+|-+++.+.+.|.+ |.++|+ +.+++..+.|..                 ...+...|..+......   
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~-----------------~~~~~~~DI~~~~~~~~~~~   65 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP-----------------RSLHVQEDVSLLNAEIIKGF   65 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT-----------------TSEEECCCGGGCCHHHHHHH
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC-----------------CCceEecChhhcCHHHHHhh
Confidence            47999999999999999999998 779999 677777776642                 23444544444321110   


Q ss_pred             --CCCCccEEEEcccccC
Q 028673          141 --VAPPFDYIIGTDVVYA  156 (205)
Q Consensus       141 --~~~~fD~Ii~~d~~y~  156 (205)
                        ....+|+|+++++.-.
T Consensus        66 ~~~~~~~D~i~ggpPCQ~   83 (376)
T 3g7u_A           66 FKNDMPIDGIIGGPPCQG   83 (376)
T ss_dssp             HCSCCCCCEEEECCCCCT
T ss_pred             cccCCCeeEEEecCCCCC
Confidence              2457999999987543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.32  E-value=0.00024  Score=59.03  Aligned_cols=114  Identities=18%  Similarity=0.100  Sum_probs=71.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeecCCCC-Ccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNED-HIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~  139 (205)
                      +.++||=||.|.|...-.+.+... +|+.+|+ +++++.+++.+... +...  .   ....+++++...|....- ...
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~--d---~pr~~rv~vii~Da~~fl~~~~  279 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL--D---NLKGDCYQVLIEDCIPVLKRYA  279 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CC--S---SSEETTEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhh--c---cccccceeeehHHHHHHHHhhh
Confidence            458999999999988888877654 6999999 88999998865321 1000  0   011234666664432211 011


Q ss_pred             cCCCCccEEEEcccccC---C--------cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          140 AVAPPFDYIIGTDVVYA---E--------HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~---~--------~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ....+||+||. |+.-.   .        -....+++.+++.|+|+|.++.-...
T Consensus       280 ~~~~~yDvIIv-Dl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s  333 (381)
T 3c6k_A          280 KEGREFDYVIN-DLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC  333 (381)
T ss_dssp             HHTCCEEEEEE-ECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             hccCceeEEEE-CCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            12468999987 33211   0        01246788899999999998765443

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.26  E-value=0.00011  Score=60.55  Aligned_cols=72  Identities=19%  Similarity=0.105  Sum_probs=49.1

Q ss_pred             CeEEEeCCCccHHHHHHHHhC--CE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           66 KRVIELGAGCGVAGFGMALLG--CN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g--~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+|+||.||+|-+++.+.+.|  ++ |.++|+ +.+++..+.|...                 ..+...|..+.......
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----------------~~~~~~Di~~~~~~~~~   65 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------------TQLLAKTIEGITLEEFD   65 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------------SCEECSCGGGCCHHHHH
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----------------cccccCCHHHccHhHcC
Confidence            479999999999999999998  55 999999 7788888877532                 12333333332210000


Q ss_pred             CCCccEEEEcccc
Q 028673          142 APPFDYIIGTDVV  154 (205)
Q Consensus       142 ~~~fD~Ii~~d~~  154 (205)
                      ...+|+|+++++.
T Consensus        66 ~~~~D~l~~gpPC   78 (343)
T 1g55_A           66 RLSFDMILMSPPC   78 (343)
T ss_dssp             HHCCSEEEECCC-
T ss_pred             cCCcCEEEEcCCC
Confidence            1269999998875

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.00  E-value=0.00026  Score=71.62  Aligned_cols=101  Identities=16%  Similarity=0.061  Sum_probs=45.7

Q ss_pred             CCeEEEeCCCccHHHHHHH-HhC------CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           65 GKRVIELGAGCGVAGFGMA-LLG------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a-~~g------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..+|||+|+|||.....+. ..+      .+++.+|+ +...+.+++.++.-               .+....+|..+..
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---------------di~~~~~d~~~~~ 1305 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---------------HVTQGQWDPANPA 1305 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---------------TEEEECCCSSCCC
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---------------ccccccccccccc
Confidence            4589999999985433222 222      25899999 66666666554331               1222111111110


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                        ......||+||++.+++........++.++++|+|||.+++...
T Consensus      1306 --~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1306 --PGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             --C-----CCEEEEECC--------------------CCEEEEEEC
T ss_pred             --cCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence              01234799999999999888888999999999999999887543

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.84  E-value=0.0093  Score=47.78  Aligned_cols=108  Identities=19%  Similarity=0.188  Sum_probs=63.2

Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCc----cHHHHHHHHh---CCEEEEEcCcchHHHHHHHHHHhhhhhccCC
Q 028673           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC----GVAGFGMALL---GCNVITTDQIEVLPLLKRNVEWNTSRISQMN  116 (205)
Q Consensus        44 ~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGt----Gl~sl~~a~~---g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~  116 (205)
                      -|..|+-...      .....|.+|||||||+    .--|..+.+.   |+.|+++|+.++..        .        
T Consensus        95 qlcqyl~~~~------~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s--------d--------  152 (344)
T 3r24_A           95 QLCQYLNTLT------LAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS--------D--------  152 (344)
T ss_dssp             HHHHHHTTSC------CCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC--------S--------
T ss_pred             HHHHHhcccc------EeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc--------C--------
Confidence            4566663321      2344688999999842    2223455555   35799999954321        0        


Q ss_pred             CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC------------CcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA------------EHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~------------~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                            .. .++..|....    ....+||+|++ |.--.            ....+..++.+.+.|+|||.+++-.-.-
T Consensus       153 ------a~-~~IqGD~~~~----~~~~k~DLVIS-DMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG  220 (344)
T 3r24_A          153 ------AD-STLIGDCATV----HTANKWDLIIS-DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  220 (344)
T ss_dssp             ------SS-EEEESCGGGE----EESSCEEEEEE-CCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             ------CC-eEEEcccccc----ccCCCCCEEEe-cCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence                  01 2355443322    12468999987 33221            1235667777888999999988875433


Q ss_pred             c
Q 028673          185 M  185 (205)
Q Consensus       185 ~  185 (205)
                      .
T Consensus       221 s  221 (344)
T 3r24_A          221 S  221 (344)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.79  E-value=0.0027  Score=51.80  Aligned_cols=45  Identities=24%  Similarity=0.304  Sum_probs=38.6

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHH
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~  105 (205)
                      ....+.+|+||.||+|-+++.+.+.|.+ |.++|+ +.+++..+.|.
T Consensus         7 ~~~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~   53 (327)
T 2c7p_A            7 KQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             CTTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred             cccCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc
Confidence            4445679999999999999999999998 889999 77888888775

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=96.67  E-value=0.012  Score=48.87  Aligned_cols=136  Identities=13%  Similarity=0.072  Sum_probs=84.6

Q ss_pred             EEEEEeCCC-CccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcchHHH
Q 028673           22 QLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPL  100 (205)
Q Consensus        22 ~~~i~q~~~-~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~~l~~  100 (205)
                      +++++-+|. ........|+++..   ||..+..      +...+.+||.++.+.|.+++.++..+. ...+|---....
T Consensus         4 ~~~l~r~p~~~~~~~l~a~da~d~---~ll~~~~------~~~~~~~~~~~~d~~gal~~~~~~~~~-~~~~ds~~~~~~   73 (375)
T 4dcm_A            4 SLTLQRFPATDDVNPLQAWEAADE---YLLQQLD------DTEIRGPVLILNDAFGALSCALAEHKP-YSIGDSYISELA   73 (375)
T ss_dssp             TCCCCCSSCCCSSCSCCSCCHHHH---HHHHTTT------TCCCCSCEEEECCSSSHHHHHTGGGCC-EEEESCHHHHHH
T ss_pred             ceeEEECCCCCCCCCCCccchHHH---HHHHhhh------hccCCCCEEEECCCCCHHHHhhccCCc-eEEEhHHHHHHH
Confidence            445555565 55677889998764   4443311      111456899999999999988876543 333564334567


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChH---hHHHHHHHhhCCCcEE
Q 028673          101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE---PLLQTIFALSGPKTTI  177 (205)
Q Consensus       101 ~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~---~ll~~~~~~l~~~g~~  177 (205)
                      ++.|++.|+..          .+.+.+..  ..+     .....||+|+.    +.+....   ..+..+...+++++.+
T Consensus        74 ~~~n~~~~~~~----------~~~~~~~~--~~~-----~~~~~~~~v~~----~lpk~~~~l~~~L~~l~~~l~~~~~i  132 (375)
T 4dcm_A           74 TRENLRLNGID----------ESSVKFLD--STA-----DYPQQPGVVLI----KVPKTLALLEQQLRALRKVVTSDTRI  132 (375)
T ss_dssp             HHHHHHHTTCC----------GGGSEEEE--TTS-----CCCSSCSEEEE----ECCSCHHHHHHHHHHHHTTCCTTSEE
T ss_pred             HHHHHHHcCCC----------ccceEecc--ccc-----ccccCCCEEEE----EcCCCHHHHHHHHHHHHhhCCCCCEE
Confidence            88999999752          11244332  222     12457999887    4444444   4455555667899999


Q ss_pred             EEEEeeccchh
Q 028673          178 LVMFSLSMFSL  188 (205)
Q Consensus       178 ~i~~~~r~~~~  188 (205)
                      ++....+....
T Consensus       133 ~~~g~~~~~~~  143 (375)
T 4dcm_A          133 IAGAKARDIHT  143 (375)
T ss_dssp             EEEEEGGGCCH
T ss_pred             EEEecccchHH
Confidence            88887665543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.62  E-value=0.006  Score=51.24  Aligned_cols=45  Identities=16%  Similarity=0.177  Sum_probs=39.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHH-HhC---CEEEEEcC-cchHHHHHHHHHH
Q 028673           63 LKGKRVIELGAGCGVAGFGMA-LLG---CNVITTDQ-IEVLPLLKRNVEW  107 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a-~~g---~~v~~~D~-~~~l~~~~~n~~~  107 (205)
                      .++..|+|+||+.|..++.++ +.+   ++|+++|- |+..+.+++|++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            467899999999999999887 443   57999999 8899999999988

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.55  E-value=0.0017  Score=53.22  Aligned_cols=74  Identities=15%  Similarity=0.060  Sum_probs=49.7

Q ss_pred             CeEEEeCCCccHHHHHHHHhCC--E-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           66 KRVIELGAGCGVAGFGMALLGC--N-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~--~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+++||.||.|-+++.+.+.|.  + |.++|+ +.+++..+.|...                 ..+...|+.+.......
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----------------~~~~~~DI~~~~~~~~~   66 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----------------TNLLNRNIQQLTPQVIK   66 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------------SCEECCCGGGCCHHHHH
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----------------CceeccccccCCHHHhc
Confidence            3799999999999999999886  6 889999 6677777766421                 22334444433211111


Q ss_pred             CCCccEEEEcccccC
Q 028673          142 APPFDYIIGTDVVYA  156 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~  156 (205)
                      ...+|+++++.+.-.
T Consensus        67 ~~~~D~l~ggpPCQ~   81 (333)
T 4h0n_A           67 KWNVDTILMSPPCQP   81 (333)
T ss_dssp             HTTCCEEEECCCCCC
T ss_pred             cCCCCEEEecCCCcc
Confidence            236899998877643

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.55  E-value=0.0037  Score=51.51  Aligned_cols=42  Identities=12%  Similarity=0.133  Sum_probs=35.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHH
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNV  105 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~  105 (205)
                      ++..|||+|.|.|.++..++..  +.+|+++++ +..++.++...
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence            3578999999999999999976  458999999 67888887654

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.29  E-value=0.035  Score=45.35  Aligned_cols=117  Identities=11%  Similarity=0.058  Sum_probs=73.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhh---c--cCCCCC----CCCCceEEEEeecC
Q 028673           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRI---S--QMNPGS----DLLGSIQAVELDWG  133 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~---~--~~~~~~----~~~~~i~~~~~dw~  133 (205)
                      .+.|+.||||.......+...  +.+++=+|.|++++.-++.+..++...   .  ...+..    -..++...+..|..
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~  177 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN  177 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence            467999999999888887764  446888888888877777666553210   0  000000    01256777777766


Q ss_pred             CCCCc----cc--CCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          134 NEDHI----KA--VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       134 ~~~~~----~~--~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +....    ..  ....+.++++-.++++  ++....+++.+.... |+|.+++...
T Consensus       178 d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~  233 (334)
T 1rjd_A          178 DITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDP  233 (334)
T ss_dssp             CHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred             CcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEec
Confidence            63211    11  2345678888777755  455668888888876 6777654444

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.26  E-value=0.0063  Score=49.32  Aligned_cols=70  Identities=19%  Similarity=0.209  Sum_probs=50.2

Q ss_pred             eEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      +||||-||.|-+++.+.+.|.+ |.++|+ +.+++..+.|..                  -.+...|..+....  .-+.
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~------------------~~~~~~DI~~i~~~--~~~~   61 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------------------AKLIKGDISKISSD--EFPK   61 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC------------------SEEEESCGGGCCGG--GSCC
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------------------CCcccCChhhCCHh--hCCc
Confidence            6999999999999999999998 789999 778887777632                  13344444433211  1347


Q ss_pred             ccEEEEcccccC
Q 028673          145 FDYIIGTDVVYA  156 (205)
Q Consensus       145 fD~Ii~~d~~y~  156 (205)
                      .|+++++.+.-.
T Consensus        62 ~D~l~ggpPCQ~   73 (331)
T 3ubt_Y           62 CDGIIGGPPSQS   73 (331)
T ss_dssp             CSEEECCCCGGG
T ss_pred             ccEEEecCCCCC
Confidence            899999877633

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.05  E-value=0.0067  Score=48.76  Aligned_cols=74  Identities=19%  Similarity=0.143  Sum_probs=49.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCE---EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~---v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ...+|+||.||.|-+++.+.+.|.+   |.++|+ +.+++..+.|..                 ...+...|..+.....
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----------------~~~~~~~DI~~i~~~~   77 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----------------GKIMYVGDVRSVTQKH   77 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----------------TCEEEECCGGGCCHHH
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----------------CCceeCCChHHccHHH
Confidence            4558999999999999999999875   489999 667776666532                 1234444444432111


Q ss_pred             c-CCCCccEEEEcccc
Q 028673          140 A-VAPPFDYIIGTDVV  154 (205)
Q Consensus       140 ~-~~~~fD~Ii~~d~~  154 (205)
                      . ....+|+++++.+.
T Consensus        78 i~~~~~~Dll~ggpPC   93 (295)
T 2qrv_A           78 IQEWGPFDLVIGGSPC   93 (295)
T ss_dssp             HHHTCCCSEEEECCCC
T ss_pred             hcccCCcCEEEecCCC
Confidence            1 12479999998765

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.98  E-value=0.013  Score=47.48  Aligned_cols=59  Identities=22%  Similarity=0.183  Sum_probs=45.6

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-c---chHHHHHHHHHHh
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-I---EVLPLLKRNVEWN  108 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~---~~l~~~~~n~~~n  108 (205)
                      ...|.+++...        ...+|..|||-.||+|..++++.+.|.+.+++|+ +   +.++.+++++...
T Consensus       228 p~~l~~~~i~~--------~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          228 PAAVIERLVRA--------LSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             CHHHHHHHHHH--------HSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHH--------hCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHc
Confidence            45666666543        1236789999999999999999999999999999 7   7888888877654

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.97  E-value=0.0048  Score=50.35  Aligned_cols=104  Identities=11%  Similarity=0.005  Sum_probs=63.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCC--E-E-EEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           65 GKRVIELGAGCGVAGFGMALLGC--N-V-ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~--~-v-~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..+|+||.||.|-+++.+.+.|.  + | .++|+ +.+++..+.|....                  +...|..+.....
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------------------~~~~DI~~~~~~~   71 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------------------VQVKNLDSISIKQ   71 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------------------CBCCCTTTCCHHH
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------------------cccCChhhcCHHH
Confidence            34899999999999999999883  5 6 69999 67777777774321                  1222333322111


Q ss_pred             cCCCCccEEEEcccccCC-----------cC-hHhHHHHHHH-hhCC---CcEEEEEEeeccc
Q 028673          140 AVAPPFDYIIGTDVVYAE-----------HL-LEPLLQTIFA-LSGP---KTTILVMFSLSMF  186 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~-----------~~-~~~ll~~~~~-~l~~---~g~~~i~~~~r~~  186 (205)
                      .....+|+++++.+.-..           ++ ...|+..+.+ +++.   ...+++....+..
T Consensus        72 i~~~~~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl  134 (327)
T 3qv2_A           72 IESLNCNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLF  134 (327)
T ss_dssp             HHHTCCCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGG
T ss_pred             hccCCCCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhh
Confidence            111268999998775332           11 2245555555 5432   3566666665554

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.88  E-value=0.01  Score=48.19  Aligned_cols=44  Identities=11%  Similarity=0.012  Sum_probs=39.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHH
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW  107 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~  107 (205)
                      +|..|||-.||+|..++++.+.|.+.+++|+ +..++.++.++..
T Consensus       252 ~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          252 PDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            6789999999999999999999999999999 7788888877654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.81  E-value=0.046  Score=44.47  Aligned_cols=90  Identities=17%  Similarity=0.115  Sum_probs=57.3

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..+|.+||=+|+|. |+..+.+|+ .|++|+++|. ++-++.+++    .+.            +  .+.    .+.+..
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~--~v~----~~~~~~  231 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGV------------K--HFY----TDPKQC  231 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTC------------S--EEE----SSGGGC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCC------------C--eec----CCHHHH
Confidence            44688999999985 877777776 4889999998 665665543    222            1  111    122211


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                         ...+|+|+-+  .-..    ..++...++++++|++++.-.
T Consensus       232 ---~~~~D~vid~--~g~~----~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          232 ---KEELDFIIST--IPTH----YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             ---CSCEEEEEEC--CCSC----CCHHHHHTTEEEEEEEEECCC
T ss_pred             ---hcCCCEEEEC--CCcH----HHHHHHHHHHhcCCEEEEECC
Confidence               2278888854  2222    245666778899999887643

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.63  E-value=0.017  Score=47.39  Aligned_cols=97  Identities=15%  Similarity=0.050  Sum_probs=59.9

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||=+|+|. |++++.+|+. |++ |+++|. ++-++.+++. ...               .+.. ..+-...+.
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~---------------~~~~-~~~~~~~~~  239 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE---------------VVTH-KVERLSAEE  239 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT---------------CEEE-ECCSCCHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh---------------cccc-cccccchHH
Confidence            44688999999975 8888877764 887 999998 6666666653 111               1111 111000000


Q ss_pred             ----cc--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 ----IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ----~~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                          ..  .....+|+|+-+      ..-+..+....++++++|++++.-
T Consensus       240 ~~~~v~~~t~g~g~Dvvid~------~g~~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          240 SAKKIVESFGGIEPAVALEC------TGVESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             HHHHHHHHTSSCCCSEEEEC------SCCHHHHHHHHHHSCTTCEEEECC
T ss_pred             HHHHHHHHhCCCCCCEEEEC------CCChHHHHHHHHHhcCCCEEEEEc
Confidence                00  013479998865      223456778888999999988764

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.62  E-value=0.024  Score=45.98  Aligned_cols=94  Identities=18%  Similarity=0.142  Sum_probs=59.2

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-  137 (205)
                      ..+|.+||-.|||. |+..+.+++ .|++|+++|. ++-++.+++    .+.             . .+  .+..+.+. 
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa-------------~-~~--i~~~~~~~~  223 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGA-------------E-VA--VNARDTDPA  223 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC-------------S-EE--EETTTSCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCC-------------C-EE--EeCCCcCHH
Confidence            44688999999985 888888886 4889999998 555555443    222             0 11  12222110 


Q ss_pred             --cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 --IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 --~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        .....+.+|+|+-+      ......++...++++++|++++.-
T Consensus       224 ~~~~~~~g~~d~vid~------~g~~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          224 AWLQKEIGGAHGVLVT------AVSPKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             HHHHHHHSSEEEEEES------SCCHHHHHHHHHHEEEEEEEEECS
T ss_pred             HHHHHhCCCCCEEEEe------CCCHHHHHHHHHHhccCCEEEEeC
Confidence              00012368888754      223567788888999999987763

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.57  E-value=0.024  Score=46.79  Aligned_cols=94  Identities=24%  Similarity=0.267  Sum_probs=56.3

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..+|.+||-+|+|. |+..+.+|+ .|++|+++|. ++-++.+++    .+.              -.+  .+..+.+..
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----lGa--------------~~v--i~~~~~~~~  251 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGA--------------DEV--VNSRNADEM  251 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTC--------------SEE--EETTCHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC--------------cEE--eccccHHHH
Confidence            34688999999985 777777776 4889999998 666666553    221              011  111111101


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ......+|+|+-+  .-.    +..++...++++++|+++..-
T Consensus       252 ~~~~~g~Dvvid~--~g~----~~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          252 AAHLKSFDFILNT--VAA----PHNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             HTTTTCEEEEEEC--CSS----CCCHHHHHTTEEEEEEEEECC
T ss_pred             HHhhcCCCEEEEC--CCC----HHHHHHHHHHhccCCEEEEec
Confidence            1112478988854  222    223556667888999877653

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.31  E-value=0.07  Score=43.45  Aligned_cols=94  Identities=17%  Similarity=0.152  Sum_probs=57.9

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC-CCC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-EDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~-~~~  137 (205)
                      ..+|.+||-.|+|. |+..+.+++ .|++|+++|. ++-++.+++    .+.             . .+.  +..+ .+.
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa-------------~-~~~--~~~~~~~~  225 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGA-------------D-VTL--VVDPAKEE  225 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC-------------S-EEE--ECCTTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC-------------C-EEE--cCcccccH
Confidence            34688999999975 777777776 5889999998 555555442    221             1 111  2221 110


Q ss_pred             ---ccc-C----CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 ---IKA-V----APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ---~~~-~----~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                         ... .    ...+|+|+-+      ......++...++++++|++++.-
T Consensus       226 ~~~i~~~~~~~~g~g~D~vid~------~g~~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          226 ESSIIERIRSAIGDLPNVTIDC------SGNEKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             HHHHHHHHHHHSSSCCSEEEEC------SCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             HHHHHHHhccccCCCCCEEEEC------CCCHHHHHHHHHHHhcCCEEEEEe
Confidence               110 0    2469998865      222456777788899999987754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.28  E-value=0.013  Score=47.78  Aligned_cols=94  Identities=14%  Similarity=0.107  Sum_probs=57.7

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-  136 (205)
                      ..+|.+||=+|+|. |++++.+|+. |+ +|+++|. ++-++.+++    .+.              -.+..  ..+.+ 
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa--------------~~vi~--~~~~~~  223 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGA--------------TDIIN--YKNGDI  223 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTC--------------CEEEC--GGGSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCC--------------ceEEc--CCCcCH
Confidence            44688999999986 8888877764 88 6999998 555555543    221              01111  11111 


Q ss_pred             --Ccc--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          137 --HIK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       137 --~~~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        ...  .....+|+|+-+  .    ..+..++...++++++|++++.-
T Consensus       224 ~~~v~~~t~g~g~D~v~d~--~----g~~~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          224 VEQILKATDGKGVDKVVIA--G----GDVHTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             HHHHHHHTTTCCEEEEEEC--S----SCTTHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHcCCCCCCEEEEC--C----CChHHHHHHHHHHhcCCEEEEec
Confidence              000  113369998854  2    22356777788899999987653

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.23  E-value=0.02  Score=47.04  Aligned_cols=94  Identities=19%  Similarity=0.200  Sum_probs=58.8

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-  136 (205)
                      ..+|.+||-+|||. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+.              -.+.  +..+.+ 
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa--------------~~vi--~~~~~~~  247 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGA--------------THVI--NSKTQDP  247 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTC--------------SEEE--ETTTSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCC--------------CEEe--cCCccCH
Confidence            44688999999986 888887776 588 6999998 555555543    221              0111  212111 


Q ss_pred             --Ccc-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          137 --HIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       137 --~~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        ... ...+.+|+|+-+      ......++...++++++|++++.-
T Consensus       248 ~~~~~~~~~gg~D~vid~------~g~~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          248 VAAIKEITDGGVNFALES------TGSPEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             HHHHHHHTTSCEEEEEEC------SCCHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHhcCCCCcEEEEC------CCCHHHHHHHHHHHhcCCEEEEeC
Confidence              010 112368988865      223466788888999999987764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.22  E-value=0.063  Score=43.85  Aligned_cols=94  Identities=18%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC---
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN---  134 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~---  134 (205)
                      ..+|.+||-+|||. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+.            +  .+.  +...   
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa------------~--~vi--~~~~~~~  228 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGA------------D--LVL--QISKESP  228 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC------------S--EEE--ECSSCCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC------------C--EEE--cCccccc
Confidence            34688999999985 888877776 488 7999998 554555442    221            0  111  1110   


Q ss_pred             CC---Ccc-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          135 ED---HIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       135 ~~---~~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .+   ... .....+|+|+-+      ...+..+....++++++|++++.-
T Consensus       229 ~~~~~~i~~~~~~g~D~vid~------~g~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          229 QEIARKVEGQLGCKPEVTIEC------TGAEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEC------SCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             chHHHHHHHHhCCCCCEEEEC------CCChHHHHHHHHHhcCCCEEEEEe
Confidence            00   000 012468998865      223456777788899999987654

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.96  E-value=0.024  Score=46.42  Aligned_cols=42  Identities=19%  Similarity=0.168  Sum_probs=32.0

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHH
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR  103 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~  103 (205)
                      ..+|.+||-+|+|. |+..+.+++ .|++|+++|. ++-++.+++
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            34688999999975 777777775 5899999998 666666553

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.58  E-value=0.048  Score=44.92  Aligned_cols=94  Identities=21%  Similarity=0.223  Sum_probs=58.7

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-  136 (205)
                      ..+|.+||=.|+|. |++++.+|+ .|+ +|+++|. ++-.+.+++    .+..              .+.  +..+.+ 
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--------------~vi--~~~~~~~  239 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT--------------ATV--DPSAGDV  239 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS--------------EEE--CTTSSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC--------------EEE--CCCCcCH
Confidence            34688999999975 777777776 488 7999998 555555443    2220              111  111111 


Q ss_pred             --Ccc----cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          137 --HIK----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       137 --~~~----~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        ...    ...+.+|+|+-+      ......++...++++++|++++.-
T Consensus       240 ~~~i~~~~~~~~gg~Dvvid~------~G~~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          240 VEAIAGPVGLVPGGVDVVIEC------AGVAETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             HHHHHSTTSSSTTCEEEEEEC------SCCHHHHHHHHHHEEEEEEEEECS
T ss_pred             HHHHHhhhhccCCCCCEEEEC------CCCHHHHHHHHHHhccCCEEEEEe
Confidence              000    112378988865      223567788888999999988764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.39  E-value=0.052  Score=44.54  Aligned_cols=91  Identities=16%  Similarity=0.185  Sum_probs=58.7

Q ss_pred             CCCeEEEeC-CCc-cHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC--
Q 028673           64 KGKRVIELG-AGC-GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--  136 (205)
Q Consensus        64 ~~~~VLdlG-cGt-Gl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~--  136 (205)
                      +|.+||=.| +|. |++++.+|+.  |++|+++|. ++-++.+++    .+.              -.+  .+..+..  
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGa--------------d~v--i~~~~~~~~  230 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGA--------------HHV--IDHSKPLAA  230 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTC--------------SEE--ECTTSCHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCC--------------CEE--EeCCCCHHH
Confidence            578999999 664 9999999975  778999999 555555543    222              011  1111110  


Q ss_pred             Cc-ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          137 HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       137 ~~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .. ......+|+|+-+      ..-+..++...++++++|++++.
T Consensus       231 ~v~~~~~~g~Dvvid~------~g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          231 EVAALGLGAPAFVFST------THTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             HHHTTCSCCEEEEEEC------SCHHHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHhcCCCceEEEEC------CCchhhHHHHHHHhcCCCEEEEE
Confidence            00 0123478888764      33456788888999999998876

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=94.36  E-value=0.098  Score=42.20  Aligned_cols=110  Identities=17%  Similarity=0.146  Sum_probs=70.6

Q ss_pred             CeEEEeCCCccHHHHHHHH-hCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc----
Q 028673           66 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA----  140 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~-~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~----  140 (205)
                      +.|++||||.=.-...+.. .+.+|+=+|.|++++.-++-+...+.         ...++...+..|..+ .-...    
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~---------~~~~~~~~v~~Dl~d-~~~~~l~~~  173 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGV---------TPTADRREVPIDLRQ-DWPPALRSA  173 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTC---------CCSSEEEEEECCTTS-CHHHHHHHT
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCC---------CCCCCeEEEecchHh-hHHHHHHhc
Confidence            4699999996444444332 24578899999988888887765432         123456777777665 21100    


Q ss_pred             --CCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 --VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 --~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                        .....=++++-.++++  .+....+++.+...+.||+.+++.+....
T Consensus       174 g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~  222 (310)
T 2uyo_A          174 GFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLH  222 (310)
T ss_dssp             TCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred             cCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence              1123456666666655  34556888888888889998888875443

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.28  E-value=0.38  Score=39.28  Aligned_cols=94  Identities=14%  Similarity=0.068  Sum_probs=58.3

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-C
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~  136 (205)
                      ..+|.+||-+|+|. |++.+.+|+ .|+ +|+++|. ++-++.+++    .+.              -.+  .+..+. .
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa--------------~~v--i~~~~~~~  247 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGA--------------TEC--INPQDFSK  247 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTC--------------SEE--ECGGGCSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCC--------------ceE--eccccccc
Confidence            44688999999875 777777776 488 7999998 666666543    221              011  122210 0


Q ss_pred             Cc----c-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCC-cEEEEEE
Q 028673          137 HI----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILVMF  181 (205)
Q Consensus       137 ~~----~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~i~~  181 (205)
                      ..    . ...+.+|+|+-+      ......++...++++++ |++++.-
T Consensus       248 ~~~~~v~~~~~~g~D~vid~------~g~~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          248 PIQEVLIEMTDGGVDYSFEC------IGNVKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             CHHHHHHHHTTSCBSEEEEC------SCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred             cHHHHHHHHhCCCCCEEEEC------CCcHHHHHHHHHhhccCCcEEEEEe
Confidence            00    0 112378988865      22245677888899999 9987653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.27  E-value=0.14  Score=41.94  Aligned_cols=94  Identities=13%  Similarity=0.077  Sum_probs=58.3

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-C
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~  136 (205)
                      ..+|.+||-+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+.              -.+  .+..+. +
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa--------------~~v--i~~~~~~~  248 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGA--------------TEC--LNPKDYDK  248 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTC--------------SEE--ECGGGCSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCC--------------cEE--Eecccccc
Confidence            44688999999975 877777776 488 7999998 665565543    221              011  111110 0


Q ss_pred             Cc----c-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCC-cEEEEEE
Q 028673          137 HI----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILVMF  181 (205)
Q Consensus       137 ~~----~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~i~~  181 (205)
                      ..    . ...+.+|+|+-+      ......++...++++++ |++++.-
T Consensus       249 ~~~~~i~~~t~gg~Dvvid~------~g~~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          249 PIYEVICEKTNGGVDYAVEC------AGRIETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             CHHHHHHHHTTSCBSEEEEC------SCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             hHHHHHHHHhCCCCCEEEEC------CCCHHHHHHHHHHHhcCCCEEEEEc
Confidence            00    0 112378988865      22245677888899999 9887653

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.19  E-value=0.35  Score=39.62  Aligned_cols=94  Identities=12%  Similarity=0.083  Sum_probs=58.3

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-C
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~  136 (205)
                      ...|.+||-+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+.              -.+  ++..+. +
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa--------------~~v--i~~~~~~~  249 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGA--------------TDF--VNPNDHSE  249 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC--------------CEE--ECGGGCSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCC--------------ceE--Eeccccch
Confidence            44688999999875 777777776 488 7999998 666665542    221              011  122210 1


Q ss_pred             Cc----c-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCC-cEEEEEE
Q 028673          137 HI----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILVMF  181 (205)
Q Consensus       137 ~~----~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~i~~  181 (205)
                      ..    . ...+.+|+|+-+      ......++...++++++ |++++.-
T Consensus       250 ~~~~~~~~~~~~g~D~vid~------~g~~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          250 PISQVLSKMTNGGVDFSLEC------VGNVGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             CHHHHHHHHHTSCBSEEEEC------SCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred             hHHHHHHHHhCCCCCEEEEC------CCCHHHHHHHHHHhhcCCcEEEEEc
Confidence            00    0 012378988865      22245678888899999 9887653

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.19  E-value=0.037  Score=45.30  Aligned_cols=93  Identities=22%  Similarity=0.232  Sum_probs=52.8

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      +|.+||=+|+|. |+..+.+++ .|++|+++|. ++-++.+++   ..+.            +  .+  .+..+.+....
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~---~lGa------------~--~v--i~~~~~~~~~~  240 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQ---DLGA------------D--DY--VIGSDQAKMSE  240 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHT---TSCC------------S--CE--EETTCHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH---HcCC------------c--ee--eccccHHHHHH
Confidence            688999999874 777777775 4899999998 554444431   1211            0  11  11111111111


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ....+|+|+-+  .-...    .++...++++++|+++..-
T Consensus       241 ~~~g~D~vid~--~g~~~----~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          241 LADSLDYVIDT--VPVHH----ALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             STTTEEEEEEC--CCSCC----CSHHHHTTEEEEEEEEECS
T ss_pred             hcCCCCEEEEC--CCChH----HHHHHHHHhccCCEEEEeC
Confidence            12468888754  22222    2344556788999877653

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.16  E-value=0.064  Score=44.04  Aligned_cols=93  Identities=23%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      +|.+||=+|+|. |+..+.+++ .|++|+++|. ++-++.+++   ..+.             . .+  .+..+.+....
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~lGa-------------~-~v--~~~~~~~~~~~  247 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALK---NFGA-------------D-SF--LVSRDQEQMQA  247 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHH---TSCC-------------S-EE--EETTCHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hcCC-------------c-eE--EeccCHHHHHH
Confidence            688999999874 776666665 4889999998 555544432   1111             0 11  22222111111


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ....+|+|+-+  .-...    .++...++++++|+++...
T Consensus       248 ~~~~~D~vid~--~g~~~----~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          248 AAGTLDGIIDT--VSAVH----PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             TTTCEEEEEEC--CSSCC----CSHHHHHHEEEEEEEEECC
T ss_pred             hhCCCCEEEEC--CCcHH----HHHHHHHHHhcCCEEEEEc
Confidence            22468988864  22122    2344556778888877653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.08  E-value=0.37  Score=39.50  Aligned_cols=94  Identities=18%  Similarity=0.171  Sum_probs=57.8

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-C
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~  136 (205)
                      ...|.+||-+|+|. |++.+.+|+ .|+ +|+++|. ++-++.+++    .+.              -.+  .+..+. +
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa--------------~~v--i~~~~~~~  252 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGA--------------TDC--LNPRELDK  252 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC--------------SEE--ECGGGCSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC--------------cEE--Eccccccc
Confidence            44688999999975 777777776 488 7999998 665555542    221              011  121210 0


Q ss_pred             Cc----c-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCC-cEEEEEE
Q 028673          137 HI----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILVMF  181 (205)
Q Consensus       137 ~~----~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~i~~  181 (205)
                      ..    . ...+.+|+|+-+      ......++...++++++ |++++.-
T Consensus       253 ~~~~~v~~~~~~g~Dvvid~------~G~~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          253 PVQDVITELTAGGVDYSLDC------AGTAQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             CHHHHHHHHHTSCBSEEEES------SCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             hHHHHHHHHhCCCccEEEEC------CCCHHHHHHHHHHhhcCCCEEEEEC
Confidence            00    0 012378988864      22246677888899999 9887653

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.08  E-value=0.018  Score=46.80  Aligned_cols=94  Identities=12%  Similarity=-0.022  Sum_probs=56.1

Q ss_pred             CCCCCCeEEEeCCC--ccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAG--CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcG--tGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+|++||-.|||  .|...+.+++ .|++|+++|. ++-++.+++    .+.             . .+  .+..+.+
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lga-------------~-~~--~~~~~~~  200 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR----LGA-------------A-YV--IDTSTAP  200 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTC-------------S-EE--EETTTSC
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----CCC-------------c-EE--EeCCccc
Confidence            34468899999997  4666666665 5999999998 666666654    221             1 11  1222211


Q ss_pred             Cc---c--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          137 HI---K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       137 ~~---~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ..   .  .....+|+|+-+      ...+.+.. ..++++++|++++.-
T Consensus       201 ~~~~~~~~~~~~g~Dvvid~------~g~~~~~~-~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          201 LYETVMELTNGIGADAAIDS------IGGPDGNE-LAFSLRPNGHFLTIG  243 (340)
T ss_dssp             HHHHHHHHTTTSCEEEEEES------SCHHHHHH-HHHTEEEEEEEEECC
T ss_pred             HHHHHHHHhCCCCCcEEEEC------CCChhHHH-HHHHhcCCCEEEEEe
Confidence            00   0  112479988865      22233333 337899999988764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.98  E-value=0.041  Score=45.33  Aligned_cols=94  Identities=16%  Similarity=0.103  Sum_probs=58.4

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC-CC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-ED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~-~~  136 (205)
                      ..+|.+||=+|+|. |++++.+|+. |+ +|+++|. ++-++.+++    .+.              -.+  .+..+ ..
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa--------------~~v--i~~~~~~~  250 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGV--------------NEF--VNPKDHDK  250 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTC--------------CEE--ECGGGCSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCC--------------cEE--EccccCch
Confidence            44688999999985 8888777764 88 6999998 665555442    221              111  11111 01


Q ss_pred             Cc-----ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCC-cEEEEEE
Q 028673          137 HI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILVMF  181 (205)
Q Consensus       137 ~~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~i~~  181 (205)
                      ..     ....+.+|+|+-+      ......++...++++++ |++++.-
T Consensus       251 ~~~~~i~~~~~gg~D~vid~------~g~~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          251 PIQEVIVDLTDGGVDYSFEC------IGNVSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             CHHHHHHHHTTSCBSEEEEC------SCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred             hHHHHHHHhcCCCCCEEEEC------CCCHHHHHHHHHHhhccCCEEEEEc
Confidence            00     0112379998865      23356778888899996 8877654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=93.94  E-value=0.37  Score=37.51  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=65.2

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-c-chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC
Q 028673           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~  134 (205)
                      +..++++++|=-|++.|+   ++..+++.|++|++++. + +..+.+...++..+             .++.+...|..+
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~   79 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG-------------SDAIAIKADIRQ   79 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTS
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCC
Confidence            456789999999988764   33444566999998876 3 34444444444332             357777877776


Q ss_pred             CCCccc-------CCCCccEEEEcccccCCcC--------hH-----------hHHHHHHHhhCCCcEEEEEEe
Q 028673          135 EDHIKA-------VAPPFDYIIGTDVVYAEHL--------LE-----------PLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       135 ~~~~~~-------~~~~fD~Ii~~d~~y~~~~--------~~-----------~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .+....       .-++.|+++.+--+.....        ++           .+.+.+...++++|.+++...
T Consensus        80 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           80 VPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            543211       1247898887654433211        11           234455555666777666543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.84  E-value=0.068  Score=43.40  Aligned_cols=91  Identities=12%  Similarity=0.035  Sum_probs=56.9

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHH-h--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC-C--
Q 028673           64 KGKRVIELGAGC-GVAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-E--  135 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~-~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~-~--  135 (205)
                      +|.+||-+|+|. |+..+.+|+ .  |++|+++|. ++-++.+++    .+.            +  .+.  +..+ .  
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~--~vi--~~~~~~~~  229 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGA------------D--YVS--EMKDAESL  229 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTC------------S--EEE--CHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCC------------C--EEe--ccccchHH
Confidence            789999999975 777777775 5  899999998 555555543    221            0  111  1111 0  


Q ss_pred             -CCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          136 -DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       136 -~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                       .... ....+|+|+-+      ...+..++...++++++|++++.-
T Consensus       230 ~~~~~-~g~g~D~vid~------~g~~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          230 INKLT-DGLGASIAIDL------VGTEETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             HHHHH-TTCCEEEEEES------SCCHHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHhh-cCCCccEEEEC------CCChHHHHHHHHHhhcCCEEEEeC
Confidence             0111 12368998865      122456777888899999987653

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.82  E-value=0.077  Score=44.18  Aligned_cols=41  Identities=29%  Similarity=0.368  Sum_probs=31.0

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHH
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK  102 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~  102 (205)
                      ..+|.+||=+|+|. |+.++.+|+ .|+ +|+++|. ++-++.++
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~  255 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK  255 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            44688999999975 777777776 488 7999998 55555554

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=93.70  E-value=0.48  Score=38.73  Aligned_cols=93  Identities=12%  Similarity=0.094  Sum_probs=57.4

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-C
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~  136 (205)
                      ..+|.+||-+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+.              -.+  ++..+. +
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa--------------~~v--i~~~~~~~  248 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGA--------------TEC--VNPQDYKK  248 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC--------------SEE--ECGGGCSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC--------------ceE--ecccccch
Confidence            34678999999875 777777776 488 7999998 665665542    221              011  122210 1


Q ss_pred             Cc----c-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCC-cEEEEE
Q 028673          137 HI----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILVM  180 (205)
Q Consensus       137 ~~----~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~i~  180 (205)
                      ..    . .....+|+|+-+      ......++...++++++ |++++.
T Consensus       249 ~~~~~~~~~~~~g~D~vid~------~g~~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          249 PIQEVLTEMSNGGVDFSFEV------IGRLDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             CHHHHHHHHTTSCBSEEEEC------SCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             hHHHHHHHHhCCCCcEEEEC------CCCHHHHHHHHHHhhcCCcEEEEe
Confidence            00    0 112378988865      22245677788889999 988765

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=93.63  E-value=0.26  Score=39.43  Aligned_cols=93  Identities=23%  Similarity=0.205  Sum_probs=55.4

Q ss_pred             CCCCCCeEEEeC-CCc-cHHHHHHHHh-CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           61 SKLKGKRVIELG-AGC-GVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        61 ~~~~~~~VLdlG-cGt-Gl~sl~~a~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ...+|.+||=.| +|. |+..+.+++. |++|++++.++-.+.++    ..+.              -.+  .+..+.+.
T Consensus       149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~----~lGa--------------~~~--i~~~~~~~  208 (321)
T 3tqh_A          149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLK----ALGA--------------EQC--INYHEEDF  208 (321)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHH----HHTC--------------SEE--EETTTSCH
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHH----HcCC--------------CEE--EeCCCcch
Confidence            345788999997 664 8888888764 88999887643244333    2332              011  22222210


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .......+|+|+-+      ..-+.+ ....++++++|+++..
T Consensus       209 ~~~~~~g~D~v~d~------~g~~~~-~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          209 LLAISTPVDAVIDL------VGGDVG-IQSIDCLKETGCIVSV  244 (321)
T ss_dssp             HHHCCSCEEEEEES------SCHHHH-HHHGGGEEEEEEEEEC
T ss_pred             hhhhccCCCEEEEC------CCcHHH-HHHHHhccCCCEEEEe
Confidence            11112468888764      222333 7777889999998765

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.59  E-value=0.12  Score=41.96  Aligned_cols=94  Identities=20%  Similarity=0.209  Sum_probs=56.9

Q ss_pred             CCCCCeEEEeCC--CccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGA--GCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGc--GtGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|++||-.|+  |.|...+.+++ .|++|+++|. ++.++.+++    .+.               + ...|..+.+.
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~---------------~-~~~d~~~~~~  226 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGG---------------E-VFIDFTKEKD  226 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTC---------------C-EEEETTTCSC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCC---------------c-eEEecCccHh
Confidence            446889999999  35766666655 5899999998 555554432    221               1 1123332221


Q ss_pred             cc-----cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 IK-----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ~~-----~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ..     .....+|+|+.+-      .....++...++++++|++++.-
T Consensus       227 ~~~~~~~~~~~~~D~vi~~~------g~~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          227 IVGAVLKATDGGAHGVINVS------VSEAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             HHHHHHHHHTSCEEEEEECS------SCHHHHHHHTTSEEEEEEEEECC
T ss_pred             HHHHHHHHhCCCCCEEEECC------CcHHHHHHHHHHHhcCCEEEEEe
Confidence            11     0112689888762      23456777778889999887654

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.59  E-value=0.091  Score=42.61  Aligned_cols=94  Identities=19%  Similarity=0.170  Sum_probs=59.0

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC--
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE--  135 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~--  135 (205)
                      ...|.+||=+|+|. |+.++.+++.  +++|+++|. ++-++.+++    .+.              -.+...  .+.  
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa--------------~~~i~~--~~~~~  228 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGA--------------DAAVKS--GAGAA  228 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTC--------------SEEEEC--STTHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC--------------CEEEcC--CCcHH
Confidence            44688999999986 8888888864  678999998 555555543    222              112211  111  


Q ss_pred             CCccc--CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          136 DHIKA--VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       136 ~~~~~--~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      +....  ....+|+|+-+      ...+..++...++++++|++++.-
T Consensus       229 ~~v~~~t~g~g~d~v~d~------~G~~~~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          229 DAIRELTGGQGATAVFDF------VGAQSTIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             HHHHHHHGGGCEEEEEES------SCCHHHHHHHHHHEEEEEEEEECS
T ss_pred             HHHHHHhCCCCCeEEEEC------CCCHHHHHHHHHHHhcCCEEEEEC
Confidence            00000  12378888865      233457888888999999988764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.36  E-value=0.4  Score=38.29  Aligned_cols=89  Identities=16%  Similarity=0.116  Sum_probs=54.6

Q ss_pred             eEEEeCC-C-ccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           67 RVIELGA-G-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        67 ~VLdlGc-G-tGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      +||=.|+ | .|+..+.+++. |++|+++|. ++-++.+++    .+.             ...+..-+.....  ....
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~----lGa-------------~~vi~~~~~~~~~--~~~~  209 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS----LGA-------------NRILSRDEFAESR--PLEK  209 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH----HTC-------------SEEEEGGGSSCCC--SSCC
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCC-------------CEEEecCCHHHHH--hhcC
Confidence            3999998 5 48888888764 889999998 666666654    221             0111111111111  1123


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ..+|+|+-+  .    . ...++...++++++|+++..-
T Consensus       210 ~~~d~v~d~--~----g-~~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          210 QLWAGAIDT--V----G-DKVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             CCEEEEEES--S----C-HHHHHHHHHTEEEEEEEEECC
T ss_pred             CCccEEEEC--C----C-cHHHHHHHHHHhcCCEEEEEe
Confidence            478887754  2    1 237788888999999988763

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=93.32  E-value=0.13  Score=41.50  Aligned_cols=95  Identities=21%  Similarity=0.245  Sum_probs=57.4

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||=.|+|. |.+++.+++. |++ ++++|. ++-++.+++    .+.              -.+.  +..+.+.
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa--------------~~~i--~~~~~~~  217 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGA--------------MQTF--NSSEMSA  217 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC--------------SEEE--ETTTSCH
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCC--------------eEEE--eCCCCCH
Confidence            44788999999985 7777777754 765 788998 554454443    332              1121  1122110


Q ss_pred             c-----ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          138 I-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       138 ~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .     ......+|+|+-+      ......++...++++++|++.+.-.
T Consensus       218 ~~~~~~~~~~~g~d~v~d~------~G~~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          218 PQMQSVLRELRFNQLILET------AGVPQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             HHHHHHHGGGCSSEEEEEC------SCSHHHHHHHHHHCCTTCEEEECCC
T ss_pred             HHHHHhhcccCCccccccc------ccccchhhhhhheecCCeEEEEEec
Confidence            0     0113457777654      2345677788889999999887643

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.27  E-value=0.071  Score=43.33  Aligned_cols=91  Identities=22%  Similarity=0.327  Sum_probs=56.5

Q ss_pred             CCCeEEEe-CCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC--CC
Q 028673           64 KGKRVIEL-GAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE--DH  137 (205)
Q Consensus        64 ~~~~VLdl-GcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~--~~  137 (205)
                      +|.+||=. |+|. |+..+.+++ .|++|+++|. ++-++.+++    .+.            +  .+.  +..+.  +.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~--~vi--~~~~~~~~~  209 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK----MGA------------D--IVL--NHKESLLNQ  209 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH----HTC------------S--EEE--CTTSCHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCC------------c--EEE--ECCccHHHH
Confidence            68899999 5664 777777776 4889999998 665555553    221            0  111  11111  00


Q ss_pred             c-ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          138 I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       138 ~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      . ......+|+|+-+      ..-...++...++++++|+++..
T Consensus       210 ~~~~~~~g~Dvv~d~------~g~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          210 FKTQGIELVDYVFCT------FNTDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             HHHHTCCCEEEEEES------SCHHHHHHHHHHHEEEEEEEEES
T ss_pred             HHHhCCCCccEEEEC------CCchHHHHHHHHHhccCCEEEEE
Confidence            0 0123468988865      33456678888899999998654

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.15  E-value=0.078  Score=43.09  Aligned_cols=92  Identities=21%  Similarity=0.180  Sum_probs=56.1

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC---
Q 028673           64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---  136 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~---  136 (205)
                      +|.+||-+|+|. |...+.+++ .|+ +|+++|. ++-++.+++    .+.              -.+  .+..+.+   
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga--------------~~~--~~~~~~~~~~  226 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGA--------------DYV--INPFEEDVVK  226 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTC--------------SEE--ECTTTSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC--------------CEE--ECCCCcCHHH
Confidence            789999999974 777776665 488 7999998 555554442    221              011  1222111   


Q ss_pred             Cccc--CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          137 HIKA--VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       137 ~~~~--~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ....  ....+|+|+-+      ......++...++++++|+++..-
T Consensus       227 ~v~~~~~g~g~D~vid~------~g~~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          227 EVMDITDGNGVDVFLEF------SGAPKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             HHHHHTTTSCEEEEEEC------SCCHHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHcCCCCCCEEEEC------CCCHHHHHHHHHHHhcCCEEEEEc
Confidence            0000  12368988865      123456777788889999877654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=93.03  E-value=0.19  Score=39.37  Aligned_cols=83  Identities=23%  Similarity=0.240  Sum_probs=55.5

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+++||++|==|++.|+   ++..+++.|++|+.+|. ++.++.+.+.+...+             .++.....|..+.+
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g-------------~~~~~~~~Dv~~~~   71 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG-------------YDAHGVAFDVTDEL   71 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------CCEEECCCCTTCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHH
Confidence            36789999999998874   35556677999999999 666665555555443             35666676766654


Q ss_pred             Ccc-------cCCCCccEEEEcccccC
Q 028673          137 HIK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ...       ..-++.|+++.|--+..
T Consensus        72 ~v~~~~~~~~~~~G~iDiLVNNAG~~~   98 (255)
T 4g81_D           72 AIEAAFSKLDAEGIHVDILINNAGIQY   98 (255)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHCCCCcEEEECCCCCC
Confidence            321       12357898887754443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.01  E-value=0.58  Score=33.99  Aligned_cols=39  Identities=21%  Similarity=0.088  Sum_probs=26.0

Q ss_pred             CCCCCeEEEeCCCc-c-HHHHHHHHh-CCEEEEEcC-cchHHH
Q 028673           62 KLKGKRVIELGAGC-G-VAGFGMALL-GCNVITTDQ-IEVLPL  100 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-G-l~sl~~a~~-g~~v~~~D~-~~~l~~  100 (205)
                      ...+.+|+=+|||. | .++..+.+. |.+|+++|. ++.++.
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~   78 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQ   78 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHH
Confidence            34567899999874 4 223344456 889999999 554443

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.00  E-value=0.054  Score=43.95  Aligned_cols=91  Identities=15%  Similarity=0.155  Sum_probs=54.7

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC--
Q 028673           64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--  137 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~--  137 (205)
                      +|.+||-+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++.  ..                 .+  .+..+.+.  
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a~-----------------~v--~~~~~~~~~~  222 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--AD-----------------RL--VNPLEEDLLE  222 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--CS-----------------EE--ECTTTSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--HH-----------------hc--cCcCccCHHH
Confidence            788999999964 777777776 488 7999998 4433333321  00                 11  12221110  


Q ss_pred             -cc-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 -IK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 -~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                       .. .....+|+|+-+      ......++...++++++|++++.-
T Consensus       223 ~~~~~~~~g~D~vid~------~g~~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          223 VVRRVTGSGVEVLLEF------SGNEAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             HHHHHHSSCEEEEEEC------SCCHHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHhcCCCCCEEEEC------CCCHHHHHHHHHHHhcCCEEEEEe
Confidence             00 013468988865      122456777788889999877653

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=92.95  E-value=0.66  Score=36.16  Aligned_cols=106  Identities=18%  Similarity=0.239  Sum_probs=62.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-c-chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. + +..+.+...++..+             .++.+...|..+.+
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~   94 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG-------------GRAVAIRADNRDAE   94 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-------------CcEEEEECCCCCHH
Confidence            5678999999998764   33444566999998876 3 34444444443332             35677777776654


Q ss_pred             Cccc-------CCCCccEEEEcccccCCcC--------hH-----------hHHHHHHHhhCCCcEEEEE
Q 028673          137 HIKA-------VAPPFDYIIGTDVVYAEHL--------LE-----------PLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~~y~~~~--------~~-----------~ll~~~~~~l~~~g~~~i~  180 (205)
                      ....       .-++.|+++.+--+.....        ++           .+++.+...++++|.++..
T Consensus        95 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i  164 (271)
T 3v2g_A           95 AIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI  164 (271)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            3211       1247899987754433211        11           2344455556667776655

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.76  E-value=0.24  Score=40.13  Aligned_cols=94  Identities=19%  Similarity=0.209  Sum_probs=55.9

Q ss_pred             CCCCCeEEEeCCC--ccHHHHHHH-Hh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAG--CGVAGFGMA-LL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcG--tGl~sl~~a-~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++++||-.|+|  .|...+.++ .. |++|+++|. ++-++.+++    .+.             . .+  .+..+.+
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~----~g~-------------~-~~--~~~~~~~  227 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGA-------------D-YV--INASMQD  227 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTC-------------S-EE--EETTTSC
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC-------------C-EE--ecCCCcc
Confidence            4468899999998  355555555 45 899999998 555555432    221             0 11  1222221


Q ss_pred             C---cc-cCC-CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          137 H---IK-AVA-PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       137 ~---~~-~~~-~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .   .. ... +.+|+|+-+      ......++...++++++|++++.-
T Consensus       228 ~~~~~~~~~~~~~~d~vi~~------~g~~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          228 PLAEIRRITESKGVDAVIDL------NNSEKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             HHHHHHHHTTTSCEEEEEES------CCCHHHHTTGGGGEEEEEEEEECC
T ss_pred             HHHHHHHHhcCCCceEEEEC------CCCHHHHHHHHHHHhcCCEEEEEC
Confidence            1   11 111 478988865      222446677778889999887653

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=92.72  E-value=1.1  Score=34.89  Aligned_cols=82  Identities=20%  Similarity=0.345  Sum_probs=53.0

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      +.+++||++|==|++.|+   ++..+++.|++|+.+|.... +.+.+.++..+             .++.....|..+..
T Consensus         4 ~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~-~~~~~~~~~~g-------------~~~~~~~~Dv~d~~   69 (247)
T 4hp8_A            4 PFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP-DETLDIIAKDG-------------GNASALLIDFADPL   69 (247)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC-HHHHHHHHHTT-------------CCEEEEECCTTSTT
T ss_pred             CcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH-HHHHHHHHHhC-------------CcEEEEEccCCCHH
Confidence            457899999999998884   45566677999999998322 22333333332             35677777777654


Q ss_pred             Cccc--CCCCccEEEEccccc
Q 028673          137 HIKA--VAPPFDYIIGTDVVY  155 (205)
Q Consensus       137 ~~~~--~~~~fD~Ii~~d~~y  155 (205)
                      ....  ...+.|+.+.|-=+.
T Consensus        70 ~v~~~~~~g~iDiLVNNAGi~   90 (247)
T 4hp8_A           70 AAKDSFTDAGFDILVNNAGII   90 (247)
T ss_dssp             TTTTSSTTTCCCEEEECCCCC
T ss_pred             HHHHHHHhCCCCEEEECCCCC
Confidence            3321  235789888765443

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=92.53  E-value=0.3  Score=39.75  Aligned_cols=89  Identities=12%  Similarity=0.119  Sum_probs=55.4

Q ss_pred             CeEEEeCCCc-cHHH-HHHH-H-hCCE-EEEEcC-cc---hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           66 KRVIELGAGC-GVAG-FGMA-L-LGCN-VITTDQ-IE---VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        66 ~~VLdlGcGt-Gl~s-l~~a-~-~g~~-v~~~D~-~~---~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+||=+|+|. |+++ +.+| + .|++ |+++|. ++   -++.+++    .+.               +..  +..+.+
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa---------------~~v--~~~~~~  232 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA---------------TYV--DSRQTP  232 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC---------------EEE--ETTTSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC---------------ccc--CCCccC
Confidence            8999999975 7777 7777 5 4887 999998 55   4555542    221               111  222211


Q ss_pred             --CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          137 --HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       137 --~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        +.....+.+|+|+-+      ...+..++...++++++|+++..-
T Consensus       233 ~~~i~~~~gg~Dvvid~------~g~~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          233 VEDVPDVYEQMDFIYEA------TGFPKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             GGGHHHHSCCEEEEEEC------SCCHHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHhCCCCCEEEEC------CCChHHHHHHHHHHhcCCEEEEEe
Confidence              010002368888754      223456777888899999987664

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=92.36  E-value=0.14  Score=43.92  Aligned_cols=41  Identities=29%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHH
Q 028673           65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~  105 (205)
                      .-+++||.||.|-+++.+.+.|.+ |.++|+ +.+++..+.|.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~  130 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH  130 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence            358999999999999999999988 899999 66777777664

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.33  E-value=0.051  Score=43.94  Aligned_cols=95  Identities=23%  Similarity=0.257  Sum_probs=56.8

Q ss_pred             CCCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGc-G-tGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+|++||-.|| | .|...+.+++ .|++|+++|. ++-++.+.+   ..+.             . .+  .+..+.+
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~---~~g~-------------~-~~--~~~~~~~  206 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVE---ELGF-------------D-GA--IDYKNED  206 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---TTCC-------------S-EE--EETTTSC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HcCC-------------C-EE--EECCCHH
Confidence            3447889999998 3 4777776665 5889999998 554444422   1221             0 11  2222221


Q ss_pred             Cc----ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          137 HI----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       137 ~~----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ..    ......+|+|+-+-      . ...+....++++++|++++.-
T Consensus       207 ~~~~~~~~~~~~~d~vi~~~------g-~~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          207 LAAGLKRECPKGIDVFFDNV------G-GEILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             HHHHHHHHCTTCEEEEEESS------C-HHHHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHHHhcCCCceEEEECC------C-cchHHHHHHHHhhCCEEEEEe
Confidence            00    01134699888651      1 246777788899999987753

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.05  E-value=1.2  Score=34.62  Aligned_cols=81  Identities=17%  Similarity=0.252  Sum_probs=48.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+++++||=.|++.|+ |..+    ++.|++|++++. ++.++.+...+...+.           ..++.+...|..+.+
T Consensus        29 ~l~~k~vlVTGasggI-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~   96 (279)
T 1xg5_A           29 RWRDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-----------PGTLIPYRCDLSNEE   96 (279)
T ss_dssp             GGTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------SSEEEEEECCTTCHH
T ss_pred             ccCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCC-----------CceEEEEEecCCCHH
Confidence            3578899999976553 4433    456999999998 5544444444433321           134667777776654


Q ss_pred             Cccc-------CCCCccEEEEcccc
Q 028673          137 HIKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ....       ..+++|++|.+--+
T Consensus        97 ~v~~~~~~~~~~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A           97 DILSMFSAIRSQHSGVDICINNAGL  121 (279)
T ss_dssp             HHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCC
Confidence            3211       11378998876543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=92.03  E-value=1  Score=35.38  Aligned_cols=80  Identities=24%  Similarity=0.239  Sum_probs=49.2

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cc-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ..+++++||=-|++.|+   ++..+++.|++|+++|. ++ ..+.+...++..             ..++.+...|..+.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~  109 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE-------------GVKCVLLPGDLSDE  109 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT-------------TCCEEEEESCTTSH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-------------CCcEEEEECCCCCH
Confidence            35678999999987764   23344556999999988 43 333333333322             23577778777765


Q ss_pred             CCcc-------cCCCCccEEEEccc
Q 028673          136 DHIK-------AVAPPFDYIIGTDV  153 (205)
Q Consensus       136 ~~~~-------~~~~~fD~Ii~~d~  153 (205)
                      +...       ..-++.|+++.+--
T Consensus       110 ~~v~~~~~~~~~~~g~iD~lvnnAg  134 (291)
T 3ijr_A          110 QHCKDIVQETVRQLGSLNILVNNVA  134 (291)
T ss_dssp             HHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCC
Confidence            4321       11247899987643

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.79  E-value=0.38  Score=37.18  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=48.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+   +             .++.+...|..+.+.
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~~~~~   68 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G-------------PRVHALRSDIADLNE   68 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G-------------GGEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-------------CcceEEEccCCCHHH
Confidence            4578999999987764   33444566999999998 55444443322   1             246777777766543


Q ss_pred             cc-------cCCCCccEEEEccccc
Q 028673          138 IK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      ..       ..-+++|+++.+--+.
T Consensus        69 v~~~~~~~~~~~g~id~lv~nAg~~   93 (255)
T 4eso_A           69 IAVLGAAAGQTLGAIDLLHINAGVS   93 (255)
T ss_dssp             HHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCC
Confidence            21       1124789888765443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.66  E-value=1.2  Score=30.95  Aligned_cols=93  Identities=14%  Similarity=0.140  Sum_probs=49.1

Q ss_pred             CCeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc-
Q 028673           65 GKRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-  140 (205)
Q Consensus        65 ~~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~-  140 (205)
                      ..+|+=+|||. | .++..+...|.+|+++|. ++.++.++.    .+               +.+...|-.+.+.+.. 
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g---------------~~~i~gd~~~~~~l~~a   67 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG---------------VRAVLGNAANEEIMQLA   67 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT---------------CEEEESCTTSHHHHHHT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC---------------CCEEECCCCCHHHHHhc
Confidence            45788899874 3 233344456889999999 665554442    22               3455544433322211 


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      .....|+|+.+   .........+-...+.+.|+..++.
T Consensus        68 ~i~~ad~vi~~---~~~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           68 HLECAKWLILT---IPNGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             TGGGCSEEEEC---CSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             CcccCCEEEEE---CCChHHHHHHHHHHHHHCCCCeEEE
Confidence            12468888875   1111112223333445667766544

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=91.64  E-value=1.3  Score=34.00  Aligned_cols=81  Identities=12%  Similarity=0.085  Sum_probs=50.2

Q ss_pred             CCCCCeEEEeCCC--ccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           62 KLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        62 ~~~~~~VLdlGcG--tGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      .+++++||=.|++  .|+   ++..+++.|++|++++. +...+.+++-.+..+            ..++.+...|..+.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~   71 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD------------RNDSIILPCDVTND   71 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS------------SCCCEEEECCCSSS
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC------------CCCceEEeCCCCCH
Confidence            4578999999986  554   34455567999999988 444444443333221            12578888887776


Q ss_pred             CCccc-------CCCCccEEEEcccc
Q 028673          136 DHIKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       136 ~~~~~-------~~~~fD~Ii~~d~~  154 (205)
                      +....       .-+++|+++.+--+
T Consensus        72 ~~v~~~~~~~~~~~g~id~li~~Ag~   97 (266)
T 3oig_A           72 AEIETCFASIKEQVGVIHGIAHCIAF   97 (266)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCCeeEEEEcccc
Confidence            53321       12478988876544

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=91.62  E-value=0.16  Score=41.06  Aligned_cols=94  Identities=20%  Similarity=0.205  Sum_probs=53.0

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-h-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-L-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||=+|+|. |...+.+++ . |++|+++|. ++-++.+++    .+.              -.+.  +..+.+.
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga--------------~~~i--~~~~~~~  220 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGA--------------DVTI--NSGDVNP  220 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTC--------------SEEE--EC-CCCH
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCC--------------eEEE--eCCCCCH
Confidence            34688999999986 555555554 4 678999998 543443332    221              1111  2222211


Q ss_pred             ---ccc--CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 ---IKA--VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ---~~~--~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                         ...  ....+|.++..      ..-...+....++++++|++++..
T Consensus       221 ~~~v~~~t~g~g~d~~~~~------~~~~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          221 VDEIKKITGGLGVQSAIVC------AVARIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             HHHHHHHTTSSCEEEEEEC------CSCHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHhhhhcCCCCceEEEEe------ccCcchhheeheeecCCceEEEEe
Confidence               111  12345655543      233566777788899999977664

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=91.60  E-value=0.72  Score=37.08  Aligned_cols=103  Identities=15%  Similarity=0.085  Sum_probs=54.1

Q ss_pred             CeEEEeCCCccHHHHHHHH----hC--CE--EEEEcC-c--------chHHHHHHHHHHhhhhhccCCCCCCCCCceEEE
Q 028673           66 KRVIELGAGCGVAGFGMAL----LG--CN--VITTDQ-I--------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV  128 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~----~g--~~--v~~~D~-~--------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~  128 (205)
                      -+|||+|=|||+..+...+    .+  .+  ++.+|. +        +....+...+.......        ...++.. 
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~--------~~~~v~L-  168 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEY--------EGERLSL-  168 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEE--------ECSSEEE-
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccc--------cCCcEEE-
Confidence            4799999999987665432    23  34  555653 1        11222222121111000        0123332 


Q ss_pred             EeecCCCCC-cccC-CCCccEEEEcccccCCcCh----HhHHHHHHHhhCCCcEEE
Q 028673          129 ELDWGNEDH-IKAV-APPFDYIIGTDVVYAEHLL----EPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       129 ~~dw~~~~~-~~~~-~~~fD~Ii~~d~~y~~~~~----~~ll~~~~~~l~~~g~~~  178 (205)
                      .+-+++..+ ++.. ..++|+|+. |.+-...++    +.+++.+.++++|||++.
T Consensus       169 ~l~~GDa~~~l~~l~~~~~Da~fl-DgFsP~kNPeLWs~e~f~~l~~~~~pgg~la  223 (308)
T 3vyw_A          169 KVLLGDARKRIKEVENFKADAVFH-DAFSPYKNPELWTLDFLSLIKERIDEKGYWV  223 (308)
T ss_dssp             EEEESCHHHHGGGCCSCCEEEEEE-CCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred             EEEechHHHHHhhhcccceeEEEe-CCCCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence            334455422 2222 347898877 443222222    489999999999999765

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=91.58  E-value=0.62  Score=36.31  Aligned_cols=79  Identities=20%  Similarity=0.244  Sum_probs=55.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      +++||++|==|++.|+   ++..+++.|++|+.+|. ++.++.+.+.++..+             .++.....|..+.++
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g-------------~~~~~~~~Dvt~~~~   70 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG-------------KEVLGVKADVSKKKD   70 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHH
Confidence            5689999999998885   34555677999999999 666666666665543             357777877776643


Q ss_pred             cc-------cCCCCccEEEEccc
Q 028673          138 IK-------AVAPPFDYIIGTDV  153 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~  153 (205)
                      ..       ..-++.|+++.|--
T Consensus        71 v~~~~~~~~~~~G~iDiLVNNAG   93 (254)
T 4fn4_A           71 VEEFVRRTFETYSRIDVLCNNAG   93 (254)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCc
Confidence            21       11257898887643

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=91.57  E-value=0.37  Score=37.20  Aligned_cols=82  Identities=20%  Similarity=0.170  Sum_probs=52.9

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~d~~   74 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG-------------GKAIGLECNVTDEQ   74 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEECCCCCHH
Confidence            45688999999988764   23444567999999998 555555555444432             35777787777654


Q ss_pred             Cccc-------CCCCccEEEEccccc
Q 028673          137 HIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ....       .-++.|+++.+--+.
T Consensus        75 ~v~~~~~~~~~~~g~id~lv~nAg~~  100 (256)
T 3gaf_A           75 HREAVIKAALDQFGKITVLVNNAGGG  100 (256)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            3211       124789988775443

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=91.41  E-value=0.36  Score=37.82  Aligned_cols=81  Identities=19%  Similarity=0.300  Sum_probs=53.1

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+.
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~d~~~   95 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG-------------GKALPIRCDVTQPDQ   95 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT-------------CCCEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEEcCCCCHHH
Confidence            5678999999988764   23444566999999998 666666655554432             356777777776543


Q ss_pred             ccc-------CCCCccEEEEccccc
Q 028673          138 IKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ...       .-+++|+++.+--+.
T Consensus        96 v~~~~~~~~~~~g~iD~lvnnAg~~  120 (276)
T 3r1i_A           96 VRGMLDQMTGELGGIDIAVCNAGIV  120 (276)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            211       124789998775443

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.31  E-value=1.7  Score=34.14  Aligned_cols=80  Identities=19%  Similarity=0.130  Sum_probs=49.2

Q ss_pred             CCCCCeEEEeCCC--ccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           62 KLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        62 ~~~~~~VLdlGcG--tGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      .++++++|=-|++  .|+   ++..+++.|++|++++. ++..+.++...+..              .++.+...|..+.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~d~   93 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL--------------GAFVAGHCDVADA   93 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH--------------TCEEEEECCTTCH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--------------CCceEEECCCCCH
Confidence            4678999999986  343   34455667999999988 43333333333322              2466777777765


Q ss_pred             CCcc-------cCCCCccEEEEccccc
Q 028673          136 DHIK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       136 ~~~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      +...       ..-+++|++|.+--+.
T Consensus        94 ~~v~~~~~~~~~~~g~iD~lVnnAG~~  120 (293)
T 3grk_A           94 ASIDAVFETLEKKWGKLDFLVHAIGFS  120 (293)
T ss_dssp             HHHHHHHHHHHHHTSCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCccC
Confidence            4321       1124789998775443

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=91.07  E-value=0.38  Score=36.86  Aligned_cols=80  Identities=21%  Similarity=0.340  Sum_probs=51.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++++||=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+.
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~   72 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG-------------GTAISVAVDVSDPES   72 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CEEEEEECCTTSHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHH
Confidence            4578999999987664   23344456999999998 555555555544332             356777777776543


Q ss_pred             ccc-------CCCCccEEEEcccc
Q 028673          138 IKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ...       .-+++|+++.+--+
T Consensus        73 ~~~~~~~~~~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           73 AKAMADRTLAEFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCc
Confidence            211       12478999877544

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=91.05  E-value=0.37  Score=37.15  Aligned_cols=80  Identities=28%  Similarity=0.244  Sum_probs=53.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+.
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~   70 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG-------------GRIVARSLDARNEDE   70 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT-------------CEEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEECcCCCHHH
Confidence            3468899999998774   33344556999999998 666666666555442             357778877776543


Q ss_pred             cc-------cCCCCccEEEEccccc
Q 028673          138 IK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      ..       .. +++|+++.+--+.
T Consensus        71 v~~~~~~~~~~-g~id~lv~nAg~~   94 (252)
T 3h7a_A           71 VTAFLNAADAH-APLEVTIFNVGAN   94 (252)
T ss_dssp             HHHHHHHHHHH-SCEEEEEECCCCC
T ss_pred             HHHHHHHHHhh-CCceEEEECCCcC
Confidence            21       12 5789988775543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=91.04  E-value=0.57  Score=38.69  Aligned_cols=97  Identities=28%  Similarity=0.250  Sum_probs=59.3

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||-+|||. |++++.+|+ .|+ +|+++|. ++-++.+++    .+               .++  .+..+.+.
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG---------------a~~--i~~~~~~~  241 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AG---------------FET--IDLRNSAP  241 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TT---------------CEE--EETTSSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cC---------------CcE--EcCCCcch
Confidence            44688999999986 888888876 588 8999998 555554432    22               122  23332211


Q ss_pred             ----cc--cCCCCccEEEEcccccCCc----------ChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 ----IK--AVAPPFDYIIGTDVVYAEH----------LLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ----~~--~~~~~fD~Ii~~d~~y~~~----------~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                          ..  .....+|+|+-+  .-...          .....++...++++++|++++.-
T Consensus       242 ~~~~~~~~~~g~g~Dvvid~--~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          242 LRDQIDQILGKPEVDCGVDA--VGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             HHHHHHHHHSSSCEEEEEEC--SCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             HHHHHHHHhCCCCCCEEEEC--CCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence                00  012369999865  21111          12346777888899999987653

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=90.97  E-value=1.2  Score=35.15  Aligned_cols=81  Identities=12%  Similarity=0.105  Sum_probs=50.4

Q ss_pred             CCCCCCeEEEeCCCc--cH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC
Q 028673           61 SKLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt--Gl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~  134 (205)
                      ..++++++|=.|++.  |+   ++..+++.|++|+++|. ++..+.++...+..+              .+.+...|..+
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~Dv~d   91 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG--------------VKLTVPCDVSD   91 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT--------------CCEEEECCTTC
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--------------CeEEEEcCCCC
Confidence            346789999999853  43   45555667999999998 544444444333331              35667777766


Q ss_pred             CCCccc-------CCCCccEEEEccccc
Q 028673          135 EDHIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       135 ~~~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      .+....       .-+++|+++.+--+.
T Consensus        92 ~~~v~~~~~~~~~~~g~iD~lVnnAG~~  119 (296)
T 3k31_A           92 AESVDNMFKVLAEEWGSLDFVVHAVAFS  119 (296)
T ss_dssp             HHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            543211       124789998775443

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=90.96  E-value=0.51  Score=36.89  Aligned_cols=81  Identities=17%  Similarity=0.238  Sum_probs=52.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+.
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~   96 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG-------------GTAQELAGDLSEAGA   96 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT-------------CCEEEEECCTTSTTH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CeEEEEEecCCCHHH
Confidence            4578999999987664   23444566999999998 655555555554432             357778877776643


Q ss_pred             ccc------CCCCccEEEEccccc
Q 028673          138 IKA------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~------~~~~fD~Ii~~d~~y  155 (205)
                      ...      ..+++|+++.+--+.
T Consensus        97 ~~~~~~~~~~~g~iD~lvnnAg~~  120 (275)
T 4imr_A           97 GTDLIERAEAIAPVDILVINASAQ  120 (275)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCC
Confidence            211      015789998775543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.90  E-value=1.9  Score=33.46  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=49.4

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcCc-------------chHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (205)
                      ..+++++||=-|++.|+   ++..+++.|++|+++|..             +.++.+...+...             ..+
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~   72 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT-------------GRK   72 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-------------TSC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc-------------CCc
Confidence            35678999999998764   233445669999999863             1222222222222             236


Q ss_pred             eEEEEeecCCCCCccc-------CCCCccEEEEccccc
Q 028673          125 IQAVELDWGNEDHIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       125 i~~~~~dw~~~~~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      +.+...|..+.+....       .-++.|+++.+--+.
T Consensus        73 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  110 (287)
T 3pxx_A           73 AYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGIC  110 (287)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             eEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            7778877776543211       124789998775443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=90.89  E-value=3  Score=31.21  Aligned_cols=76  Identities=16%  Similarity=0.144  Sum_probs=44.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCce-EEEEeecCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSI-QAVELDWGN  134 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i-~~~~~dw~~  134 (205)
                      ..+++++||=.|+. |.+|..++    +.|++|++++. ++-++.+..    .               .+ .+...|.. 
T Consensus        17 ~~l~~~~ilVtGat-G~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----~---------------~~~~~~~~Dl~-   75 (236)
T 3e8x_A           17 LYFQGMRVLVVGAN-GKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----R---------------GASDIVVANLE-   75 (236)
T ss_dssp             ----CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----T---------------TCSEEEECCTT-
T ss_pred             cCcCCCeEEEECCC-ChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----C---------------CCceEEEcccH-
Confidence            45678999999964 44454444    45899999998 554332221    1               35 67777776 


Q ss_pred             CCCcccCCCCccEEEEcccccCCc
Q 028673          135 EDHIKAVAPPFDYIIGTDVVYAEH  158 (205)
Q Consensus       135 ~~~~~~~~~~fD~Ii~~d~~y~~~  158 (205)
                       +.....-..+|+|+.+--.....
T Consensus        76 -~~~~~~~~~~D~vi~~ag~~~~~   98 (236)
T 3e8x_A           76 -EDFSHAFASIDAVVFAAGSGPHT   98 (236)
T ss_dssp             -SCCGGGGTTCSEEEECCCCCTTS
T ss_pred             -HHHHHHHcCCCEEEECCCCCCCC
Confidence             32333335789998775554433

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=90.79  E-value=0.47  Score=36.74  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=52.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~   74 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG-------------RRALSVGTDITDDAQ   74 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHH
Confidence            4578999999998774   34445567999999998 555555555554432             357778877776543


Q ss_pred             cc-------cCCCCccEEEEcc
Q 028673          138 IK-------AVAPPFDYIIGTD  152 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d  152 (205)
                      ..       ..-++.|+++.+-
T Consensus        75 v~~~~~~~~~~~g~id~lv~nA   96 (264)
T 3ucx_A           75 VAHLVDETMKAYGRVDVVINNA   96 (264)
T ss_dssp             HHHHHHHHHHHTSCCSEEEECC
T ss_pred             HHHHHHHHHHHcCCCcEEEECC
Confidence            21       1124789998775

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=90.77  E-value=0.42  Score=37.92  Aligned_cols=81  Identities=14%  Similarity=0.173  Sum_probs=52.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++++||=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+.
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~   94 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG-------------FDAHGVVCDVRHLDE   94 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEEccCCCHHH
Confidence            4678999999998764   23344556999999998 555555555554432             357777877776543


Q ss_pred             ccc-------CCCCccEEEEccccc
Q 028673          138 IKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ...       ..+++|+++.+--+.
T Consensus        95 v~~~~~~~~~~~g~id~lvnnAg~~  119 (301)
T 3tjr_A           95 MVRLADEAFRLLGGVDVVFSNAGIV  119 (301)
T ss_dssp             HHHHHHHHHHHHSSCSEEEECCCCC
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCcC
Confidence            211       124789998775443

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=90.58  E-value=0.59  Score=37.41  Aligned_cols=92  Identities=20%  Similarity=0.155  Sum_probs=53.4

Q ss_pred             CCC-eEEEeCC-C-ccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           64 KGK-RVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        64 ~~~-~VLdlGc-G-tGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .+. +||=.|| | .|+..+.+++ .|++|++++. ++-++.+++    .+.             ...+..-+.. .+..
T Consensus       149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa-------------~~v~~~~~~~-~~~~  210 (330)
T 1tt7_A          149 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGA-------------SEVISREDVY-DGTL  210 (330)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTC-------------SEEEEHHHHC-SSCC
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC-------------cEEEECCCch-HHHH
Confidence            454 7999998 5 4777777775 5889999998 665665543    221             0111111110 1101


Q ss_pred             c-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          139 K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       139 ~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      . .....+|+|+-+  .-   .  ..+....++++++|++++.
T Consensus       211 ~~~~~~~~d~vid~--~g---~--~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          211 KALSKQQWQGAVDP--VG---G--KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             CSSCCCCEEEEEES--CC---T--HHHHHHHTTEEEEEEEEEC
T ss_pred             HHhhcCCccEEEEC--Cc---H--HHHHHHHHhhcCCCEEEEE
Confidence            1 112468888765  11   1  3567777888999988765

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=90.54  E-value=0.31  Score=39.04  Aligned_cols=93  Identities=13%  Similarity=0.096  Sum_probs=55.3

Q ss_pred             CCCCCeEEEeCC--CccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGA--GCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGc--GtGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++++||-.|+  |.|...+.+++ .|++|+++|. ++-++.+++    .+.             . .  ..+..+.+.
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~----~g~-------------~-~--~~~~~~~~~  197 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGA-------------W-Q--VINYREEDL  197 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTC-------------S-E--EEETTTSCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC-------------C-E--EEECCCccH
Confidence            446889999994  34666655554 5899999998 555555443    221             0 1  123222211


Q ss_pred             c---c--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 I---K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ~---~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .   .  .....+|+++.+--       ...++...++++++|++++.-
T Consensus       198 ~~~~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          198 VERLKEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             HHHHHHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEe
Confidence            0   0  01236899887621       355677778889999877653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=90.46  E-value=0.46  Score=36.67  Aligned_cols=83  Identities=25%  Similarity=0.293  Sum_probs=53.4

Q ss_pred             CCCCCCeEEEeCC-CccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           61 SKLKGKRVIELGA-GCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        61 ~~~~~~~VLdlGc-GtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ..+++++||=.|+ |.|+   +...+++.|++|+++|. ++.++.+...++...            ..++.+...|..+.
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~   85 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG------------LGRVEAVVCDVTST   85 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC------------SSCEEEEECCTTCH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC------------CCceEEEEeCCCCH
Confidence            3467899999998 6765   34445567999999998 555555544443321            24678888887765


Q ss_pred             CCccc-------CCCCccEEEEccccc
Q 028673          136 DHIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       136 ~~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      +....       .-+++|++|.+--+.
T Consensus        86 ~~v~~~~~~~~~~~g~id~li~~Ag~~  112 (266)
T 3o38_A           86 EAVDALITQTVEKAGRLDVLVNNAGLG  112 (266)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHhCCCcEEEECCCcC
Confidence            43211       124789998775543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=90.41  E-value=1.9  Score=29.61  Aligned_cols=67  Identities=24%  Similarity=0.302  Sum_probs=39.4

Q ss_pred             CCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..++|+=+|||.  +|..+    .+.|.+|+++|. ++.++.++.    .+               +.+...|..+.+.+
T Consensus         5 ~~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~~---------------~~~~~gd~~~~~~l   63 (141)
T 3llv_A            5 GRYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLED----EG---------------FDAVIADPTDESFY   63 (141)
T ss_dssp             -CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT---------------CEEEECCTTCHHHH
T ss_pred             CCCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC---------------CcEEECCCCCHHHH
Confidence            356899999974  44444    445889999999 655444432    21               35555554443322


Q ss_pred             cc-CCCCccEEEEc
Q 028673          139 KA-VAPPFDYIIGT  151 (205)
Q Consensus       139 ~~-~~~~fD~Ii~~  151 (205)
                      .. ....+|+|+.+
T Consensus        64 ~~~~~~~~d~vi~~   77 (141)
T 3llv_A           64 RSLDLEGVSAVLIT   77 (141)
T ss_dssp             HHSCCTTCSEEEEC
T ss_pred             HhCCcccCCEEEEe
Confidence            11 13478988876

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=90.39  E-value=0.48  Score=37.91  Aligned_cols=90  Identities=16%  Similarity=0.157  Sum_probs=52.3

Q ss_pred             CCC-eEEEeCC-C-ccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC--C
Q 028673           64 KGK-RVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE--D  136 (205)
Q Consensus        64 ~~~-~VLdlGc-G-tGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~--~  136 (205)
                      .+. +||-.|+ | .|+..+.+++ .|++|++++. ++-++.+++    .+.            +  .+.  +..+.  +
T Consensus       148 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa------------~--~~i--~~~~~~~~  207 (328)
T 1xa0_A          148 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGA------------K--EVL--AREDVMAE  207 (328)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTC------------S--EEE--ECC-----
T ss_pred             CCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCC------------c--EEE--ecCCcHHH
Confidence            454 7999998 4 4887777776 4889999998 565565543    221            0  111  11111  0


Q ss_pred             Ccc-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          137 HIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       137 ~~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ... .....+|+|+-+  .-.     ..+....++++++|++++.
T Consensus       208 ~~~~~~~~~~d~vid~--~g~-----~~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          208 RIRPLDKQRWAAAVDP--VGG-----RTLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             ----CCSCCEEEEEEC--STT-----TTHHHHHHTEEEEEEEEEC
T ss_pred             HHHHhcCCcccEEEEC--CcH-----HHHHHHHHhhccCCEEEEE
Confidence            001 112468988765  211     2456667788999998765

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=90.37  E-value=0.67  Score=36.16  Aligned_cols=83  Identities=17%  Similarity=0.205  Sum_probs=51.1

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      +..++++++|=-|++.|+   ++..+++.|++|+++|. .+.++.+...+....            ..++.+...|..+.
T Consensus        22 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~   89 (277)
T 4fc7_A           22 PDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT------------GRRCLPLSMDVRAP   89 (277)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTCH
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCcEEEEEcCCCCH
Confidence            456789999999987764   23344456999999998 544443333332211            13577788777765


Q ss_pred             CCccc-------CCCCccEEEEcccc
Q 028673          136 DHIKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       136 ~~~~~-------~~~~fD~Ii~~d~~  154 (205)
                      +....       .-++.|+++.+--+
T Consensus        90 ~~v~~~~~~~~~~~g~id~lv~nAg~  115 (277)
T 4fc7_A           90 PAVMAAVDQALKEFGRIDILINCAAG  115 (277)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCcC
Confidence            43211       12478998877543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=90.06  E-value=0.25  Score=39.31  Aligned_cols=58  Identities=9%  Similarity=0.088  Sum_probs=38.9

Q ss_pred             ceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC--------------------hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          124 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       124 ~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ++.+...|+.+... ...+++||+|+++++++....                    +..+++.+.++|+|+|.+++...
T Consensus        21 ~~~i~~gD~~~~l~-~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           21 VHRLHVGDAREVLA-SFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             CEEEEESCHHHHHT-TSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEECcHHHHHh-hCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            45677766654211 112468999999888764211                    23567788889999999988865

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=89.96  E-value=1.5  Score=35.05  Aligned_cols=82  Identities=21%  Similarity=0.243  Sum_probs=52.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+.+++||=-|++.|+   +...+++.|++|++++. ++.++.+...+...+.           ..++.+...|..+.+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~~~~~   73 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGS-----------GPEVMGVQLDVASREG   73 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEECCTTCHHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCeEEEEECCCCCHHH
Confidence            4578899999998764   23344456999999998 5555555555544321           1257788877776543


Q ss_pred             cc-------cCCCCccEEEEcccc
Q 028673          138 IK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ..       ..-+++|+++.+--+
T Consensus        74 v~~~~~~~~~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           74 FKMAADEVEARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHHHHHHHHHHTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCc
Confidence            21       112478999877544

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=89.96  E-value=0.3  Score=37.74  Aligned_cols=80  Identities=29%  Similarity=0.308  Sum_probs=50.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...++..             ..++.+...|..+.+.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~   69 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF-------------PGQILTVQMDVRNTDD   69 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS-------------TTCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHH
Confidence            4578899999987664   23344566999999998 55555444433222             2357778877776543


Q ss_pred             ccc-------CCCCccEEEEcccc
Q 028673          138 IKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ...       .-++.|+++.+--+
T Consensus        70 v~~~~~~~~~~~g~id~lv~nAg~   93 (257)
T 3imf_A           70 IQKMIEQIDEKFGRIDILINNAAG   93 (257)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            211       12478998876543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=89.94  E-value=1.8  Score=33.69  Aligned_cols=81  Identities=21%  Similarity=0.299  Sum_probs=47.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cc-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .++++++|=-|++.|+   ++..+++.|++|++++. ++ ..+.+.+.+...+             .++.+...|..+.+
T Consensus        26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~   92 (283)
T 1g0o_A           26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG-------------SDAACVKANVGVVE   92 (283)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC-------------CCeEEEEcCCCCHH
Confidence            3568899999987663   22333456999999987 43 3343333333322             35677777766543


Q ss_pred             Cccc-------CCCCccEEEEccccc
Q 028673          137 HIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ....       .-+++|+++.+--+.
T Consensus        93 ~~~~~~~~~~~~~g~iD~lv~~Ag~~  118 (283)
T 1g0o_A           93 DIVRMFEEAVKIFGKLDIVCSNSGVV  118 (283)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            2211       114789998775443

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=89.93  E-value=0.71  Score=37.78  Aligned_cols=95  Identities=19%  Similarity=0.241  Sum_probs=52.4

Q ss_pred             CCCCCeEEEeC-CC-ccHHHHHHHH-hCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELG-AG-CGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlG-cG-tGl~sl~~a~-~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..+|.+||=.| +| .|...+.+++ .|++|++++.++-.+.++    ..+.             . .+  .+..+.+..
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~----~lGa-------------~-~v--~~~~~~~~~  240 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVR----KLGA-------------D-DV--IDYKSGSVE  240 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHH----HTTC-------------S-EE--EETTSSCHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHH----HcCC-------------C-EE--EECCchHHH
Confidence            34688999999 55 4877777775 488999888644344332    2221             0 11  122221100


Q ss_pred             --ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 --KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 --~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        ......+|+|+-+  .-   .....+....++++++|+++..-
T Consensus       241 ~~~~~~~g~D~vid~--~g---~~~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          241 EQLKSLKPFDFILDN--VG---GSTETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             HHHHTSCCBSEEEES--SC---TTHHHHGGGGBCSSSCCEEEESC
T ss_pred             HHHhhcCCCCEEEEC--CC---ChhhhhHHHHHhhcCCcEEEEeC
Confidence              0012468988864  11   11123344556789999887654

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=89.86  E-value=0.57  Score=35.86  Aligned_cols=80  Identities=21%  Similarity=0.341  Sum_probs=49.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=.|++.|+   ++..+++.|++|++++. ++.++.+...+...+             .++.+...|..+.+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~~~~~   70 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG-------------AKVHVLELDVADRQG   70 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEECCCCCHHH
Confidence            4578899999987663   23344456999999998 555554444443321             256777777766543


Q ss_pred             ccc-------CCCCccEEEEcccc
Q 028673          138 IKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ...       .-+++|+++.+--+
T Consensus        71 ~~~~~~~~~~~~g~id~lv~nAg~   94 (247)
T 2jah_A           71 VDAAVASTVEALGGLDILVNNAGI   94 (247)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            211       11478998876443

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=89.78  E-value=0.44  Score=38.90  Aligned_cols=41  Identities=15%  Similarity=0.072  Sum_probs=34.3

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHH
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLK  102 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~  102 (205)
                      ..+|..++|..||.|--+..+++. +  .+|+++|. +++++.++
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            346789999999999999988876 3  47999999 78888774

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=89.57  E-value=0.42  Score=39.18  Aligned_cols=40  Identities=38%  Similarity=0.502  Sum_probs=28.2

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEEcC-cchHHHHH
Q 028673           63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLK  102 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a-~~g~~v~~~D~-~~~l~~~~  102 (205)
                      +++++|+=+|+|. |...+.++ ..|++|+++|. ++-++.++
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~  207 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE  207 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            4568999999974 55544444 45889999999 65555444

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=89.50  E-value=1.9  Score=33.97  Aligned_cols=82  Identities=22%  Similarity=0.183  Sum_probs=48.7

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...+.          ...++.+...|..+.+..
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----------~~~~~~~~~~Dv~d~~~v   93 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV----------PAEKINAVVADVTEASGQ   93 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC----------CCceEEEEecCCCCHHHH
Confidence            468899999987653   23334456999999998 5555544444433210          011467778777765432


Q ss_pred             cc-------CCCCccEEEEcccc
Q 028673          139 KA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       139 ~~-------~~~~fD~Ii~~d~~  154 (205)
                      ..       .-+++|+++.+--+
T Consensus        94 ~~~~~~~~~~~g~iD~lvnnAG~  116 (297)
T 1xhl_A           94 DDIINTTLAKFGKIDILVNNAGA  116 (297)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCc
Confidence            11       12378998876543

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=89.38  E-value=1.3  Score=34.29  Aligned_cols=82  Identities=20%  Similarity=0.142  Sum_probs=48.8

Q ss_pred             CCCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cc---hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecC
Q 028673           61 SKLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IE---VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  133 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~---~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~  133 (205)
                      ..++++++|=-|++.|+-   +..+++.|++|++++. ..   .++.+...+...             ..++.+...|..
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~   73 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ-------------GAKVALYQSDLS   73 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT-------------TCEEEEEECCCC
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc-------------CCcEEEEECCCC
Confidence            356789999999987742   2333445899998875 32   233333333322             235777787777


Q ss_pred             CCCCccc-------CCCCccEEEEccccc
Q 028673          134 NEDHIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       134 ~~~~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      +.+....       .-++.|+++.+--+.
T Consensus        74 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~  102 (262)
T 3ksu_A           74 NEEEVAKLFDFAEKEFGKVDIAINTVGKV  102 (262)
T ss_dssp             SHHHHHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            6543211       124789988775443

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=89.35  E-value=0.93  Score=35.09  Aligned_cols=82  Identities=18%  Similarity=0.283  Sum_probs=52.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++++||=-|++.|+   ++..+++.|++|+++|. ++.++.+...+....            ..++.+...|..+.+.
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~~~~~   84 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF------------GTDVHTVAIDLAEPDA   84 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTSTTH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCcEEEEEecCCCHHH
Confidence            4578999999987764   33444566999999998 555555554444321            1357888888877654


Q ss_pred             ccc-------CCCCccEEEEccccc
Q 028673          138 IKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ...       .-++.|+++.+--+.
T Consensus        85 v~~~~~~~~~~~g~id~lv~nAg~~  109 (266)
T 4egf_A           85 PAELARRAAEAFGGLDVLVNNAGIS  109 (266)
T ss_dssp             HHHHHHHHHHHHTSCSEEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcC
Confidence            321       124789988775443

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=89.32  E-value=0.56  Score=36.58  Aligned_cols=80  Identities=15%  Similarity=0.121  Sum_probs=50.9

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.....|..+.+.
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~d~~~   91 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG-------------LEGRGAVLNVNDATA   91 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT-------------CCCEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEEeCCCHHH
Confidence            4578899999987664   33444566999999998 555555555554442             246677777666543


Q ss_pred             ccc-------CCCCccEEEEcccc
Q 028673          138 IKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ...       .-++.|+++.+--+
T Consensus        92 v~~~~~~~~~~~g~iD~lvnnAg~  115 (270)
T 3ftp_A           92 VDALVESTLKEFGALNVLVNNAGI  115 (270)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            211       12478998877544

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=89.30  E-value=0.78  Score=35.32  Aligned_cols=80  Identities=15%  Similarity=0.134  Sum_probs=48.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++++||=-|++.|+   +...+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+.
T Consensus         6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~   72 (260)
T 2ae2_A            6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-------------FKVEASVCDLSSRSE   72 (260)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CEEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHH
Confidence            3578899999986653   23334456999999998 554444444333221             246777777766543


Q ss_pred             ccc-------CC-CCccEEEEcccc
Q 028673          138 IKA-------VA-PPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~~-~~fD~Ii~~d~~  154 (205)
                      ...       .- +++|+++.+--+
T Consensus        73 ~~~~~~~~~~~~~g~id~lv~~Ag~   97 (260)
T 2ae2_A           73 RQELMNTVANHFHGKLNILVNNAGI   97 (260)
T ss_dssp             HHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCCEEEECCCC
Confidence            211       11 578999877544

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=89.19  E-value=1.2  Score=36.58  Aligned_cols=99  Identities=22%  Similarity=0.168  Sum_probs=60.0

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ...|.+||-+|||. |++++.+|+. |+ +|+++|. ++-++.+++    .+.               ++  .+..+.+.
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa---------------~~--i~~~~~~~  241 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF---------------EI--ADLSLDTP  241 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---------------EE--EETTSSSC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC---------------cE--EccCCcch
Confidence            44688999999986 8888888864 88 6999998 555555543    221               22  22222211


Q ss_pred             ----ccc--CCCCccEEEEcccc---------cCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 ----IKA--VAPPFDYIIGTDVV---------YAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ----~~~--~~~~fD~Ii~~d~~---------y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                          ...  ....+|+|+-+---         ++.......++...++++++|++++.-
T Consensus       242 ~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          242 LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             HHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence                100  12469998854211         111223346778888999999987653

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=89.19  E-value=0.59  Score=36.39  Aligned_cols=79  Identities=15%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             CCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+...
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~v~   69 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG-------------GTALAQVLDVTDRHSVA   69 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT-------------CEEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHHHH
Confidence            57889999988764   23344566999999998 555555555554432             35677777777654321


Q ss_pred             c-------CCCCccEEEEccccc
Q 028673          140 A-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       140 ~-------~~~~fD~Ii~~d~~y  155 (205)
                      .       .-++.|+++.+--+.
T Consensus        70 ~~~~~~~~~~g~iD~lVnnAG~~   92 (264)
T 3tfo_A           70 AFAQAAVDTWGRIDVLVNNAGVM   92 (264)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCC
Confidence            1       124789988775443

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=89.19  E-value=0.83  Score=35.49  Aligned_cols=80  Identities=18%  Similarity=0.126  Sum_probs=48.9

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+.
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~   84 (273)
T 1ae1_A           18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG-------------LNVEGSVCDLLSRTE   84 (273)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEECCCCCHHH
Confidence            3578899999987653   23334456999999998 554444443333221             256777777766543


Q ss_pred             ccc-------C-CCCccEEEEcccc
Q 028673          138 IKA-------V-APPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~-~~~fD~Ii~~d~~  154 (205)
                      ...       . .+++|+++.+--+
T Consensus        85 ~~~~~~~~~~~~~g~id~lv~nAg~  109 (273)
T 1ae1_A           85 RDKLMQTVAHVFDGKLNILVNNAGV  109 (273)
T ss_dssp             HHHHHHHHHHHTTSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCcEEEECCCC
Confidence            211       1 1578999877544

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=89.01  E-value=0.98  Score=34.71  Aligned_cols=81  Identities=15%  Similarity=0.044  Sum_probs=49.2

Q ss_pred             CCCCCCCeEEEeCCC--ccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecC
Q 028673           60 PSKLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  133 (205)
Q Consensus        60 ~~~~~~~~VLdlGcG--tGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~  133 (205)
                      ....++++||=.|++  .|+   ++..+++.|++|++++. +...+.+++..+..              ..+.+...|..
T Consensus         9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~   74 (271)
T 3ek2_A            9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF--------------GSELVFPCDVA   74 (271)
T ss_dssp             CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT--------------TCCCEEECCTT
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHc--------------CCcEEEECCCC
Confidence            456688999999985  443   23344556999999988 44444444333332              23567777776


Q ss_pred             CCCCcc-------cCCCCccEEEEcccc
Q 028673          134 NEDHIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       134 ~~~~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      +.+...       ..-++.|+++.+--+
T Consensus        75 ~~~~v~~~~~~~~~~~g~id~lv~nAg~  102 (271)
T 3ek2_A           75 DDAQIDALFASLKTHWDSLDGLVHSIGF  102 (271)
T ss_dssp             CHHHHHHHHHHHHHHCSCEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence            654321       112478999876544

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=89.01  E-value=1.4  Score=34.23  Aligned_cols=80  Identities=15%  Similarity=0.160  Sum_probs=48.6

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC--cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++++|=-|++.|+   ++..+++.|++|++++.  ++..+.+...+...+             .++.+...|..+.+.
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~   91 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG-------------GKALTAQADVSDPAA   91 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-------------CeEEEEEcCCCCHHH
Confidence            367899999988774   34445567999888754  334554444444332             356777877776543


Q ss_pred             ccc-------CCCCccEEEEccccc
Q 028673          138 IKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ...       .-++.|+++.+--+.
T Consensus        92 v~~~~~~~~~~~g~iD~lvnnAG~~  116 (267)
T 3u5t_A           92 VRRLFATAEEAFGGVDVLVNNAGIM  116 (267)
T ss_dssp             HHHHHHHHHHHHSCEEEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            211       124789988775443

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=88.92  E-value=2  Score=33.57  Aligned_cols=81  Identities=11%  Similarity=0.123  Sum_probs=47.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-c-chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC--
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--  134 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~--  134 (205)
                      .++++++|=-|++.|+   ++..+++.|++|++++. + +.++.+...+....            ..++.+...|..+  
T Consensus        20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~~~~   87 (288)
T 2x9g_A           20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER------------SNTAVVCQADLTNSN   87 (288)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS------------TTCEEEEECCCSCST
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc------------CCceEEEEeecCCcc
Confidence            4578899999987664   23344556999999998 5 54444444333110            1356777877776  


Q ss_pred             --CCCccc-------CCCCccEEEEcccc
Q 028673          135 --EDHIKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       135 --~~~~~~-------~~~~fD~Ii~~d~~  154 (205)
                        .+....       .-+++|++|.+--+
T Consensus        88 ~~~~~v~~~~~~~~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A           88 VLPASCEEIINSCFRAFGRCDVLVNNASA  116 (288)
T ss_dssp             THHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence              321110       12478998876544

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=88.84  E-value=0.61  Score=36.08  Aligned_cols=83  Identities=18%  Similarity=0.225  Sum_probs=52.1

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+            ..++.+...|..+.+
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~~~~   73 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG------------SGKVIGVQTDVSDRA   73 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS------------SSCEEEEECCTTSHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC------------CCcEEEEEcCCCCHH
Confidence            35678999999987664   23344556999999998 555555444443321            135777887777654


Q ss_pred             Cccc-------CCCCccEEEEccccc
Q 028673          137 HIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ....       .-+++|+++.+--+.
T Consensus        74 ~v~~~~~~~~~~~g~id~lvnnAg~~   99 (262)
T 3pk0_A           74 QCDALAGRAVEEFGGIDVVCANAGVF   99 (262)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            3211       124789998775443

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=88.82  E-value=0.9  Score=35.23  Aligned_cols=81  Identities=20%  Similarity=0.183  Sum_probs=50.2

Q ss_pred             CCCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ..+++++||=.|++.| +|..+    ++.|++|+++|. ++.++.+...++..+             .++.+...|..+.
T Consensus        27 ~~l~~k~vlITGasgg-IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dl~~~   92 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG-------------AKVHTFVVDCSNR   92 (272)
T ss_dssp             CCCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCH
T ss_pred             cccCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC-------------CeEEEEEeeCCCH
Confidence            3467889999997655 34444    456999999998 554554444443321             3577778777765


Q ss_pred             CCcc-------cCCCCccEEEEccccc
Q 028673          136 DHIK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       136 ~~~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      +...       ..-+++|++|.+--+.
T Consensus        93 ~~v~~~~~~~~~~~g~iD~li~~Ag~~  119 (272)
T 1yb1_A           93 EDIYSSAKKVKAEIGDVSILVNNAGVV  119 (272)
T ss_dssp             HHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHHCCCCcEEEECCCcC
Confidence            4321       1124789998775443

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=88.80  E-value=1.2  Score=36.18  Aligned_cols=33  Identities=27%  Similarity=0.336  Sum_probs=24.3

Q ss_pred             CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEE-cC
Q 028673           62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITT-DQ   94 (205)
Q Consensus        62 ~~~~~~VLdlGc-G-tGl~sl~~a~-~g~~v~~~-D~   94 (205)
                      ..+|.+||=+|+ | .|++++.+|+ .|++++++ +.
T Consensus       165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~  201 (357)
T 1zsy_A          165 LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRD  201 (357)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             cCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecC
Confidence            346889999997 5 4888888886 48885554 44

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=88.58  E-value=3.4  Score=32.89  Aligned_cols=100  Identities=16%  Similarity=0.112  Sum_probs=54.6

Q ss_pred             CeEEEeCCCc--cHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        66 ~~VLdlGcGt--Gl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      .+|+=+|+|.  +.++..+++.|.+|++.+.++ .+.    ++.++......     ......+......  ........
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~----i~~~Gl~~~~~-----~~g~~~~~~~~~~--~~~~~~~~   70 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-YET----VKAKGIRIRSA-----TLGDYTFRPAAVV--RSAAELET   70 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-HHH----HHHHCEEEEET-----TTCCEEECCSCEE--SCGGGCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-HHH----HHhCCcEEeec-----CCCcEEEeeeeeE--CCHHHcCC
Confidence            4788899986  466777777899999999854 232    33333211100     0111111100000  01111224


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .+|+|+.+=.-+.   .+.+++.+...++++..++..
T Consensus        71 ~~DlVilavK~~~---~~~~l~~l~~~l~~~t~Iv~~  104 (320)
T 3i83_A           71 KPDCTLLCIKVVE---GADRVGLLRDAVAPDTGIVLI  104 (320)
T ss_dssp             CCSEEEECCCCCT---TCCHHHHHTTSCCTTCEEEEE
T ss_pred             CCCEEEEecCCCC---hHHHHHHHHhhcCCCCEEEEe
Confidence            7999998744443   446778888888887765443

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=88.58  E-value=1.3  Score=34.61  Aligned_cols=81  Identities=12%  Similarity=0.092  Sum_probs=50.9

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-c-chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ...+++++|=-|++.|+   ++..+++.|++|+++|. + +.++.+...+...+             .++.+...|..+.
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~d~   91 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG-------------ARVIFLRADLADL   91 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSG
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC-------------CcEEEEEecCCCH
Confidence            34578899999987764   33444566999999986 3 34444444444332             3578888887776


Q ss_pred             CCccc-------CCCCccEEEEcccc
Q 028673          136 DHIKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       136 ~~~~~-------~~~~fD~Ii~~d~~  154 (205)
                      +....       .-++.|+++.+--+
T Consensus        92 ~~v~~~~~~~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A           92 SSHQATVDAVVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             GGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            54321       12478999876544

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=88.55  E-value=0.38  Score=37.57  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=51.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+             .++.+...|..+.+.
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~   89 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG-------------HDAEAVAFDVTSESE   89 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------CCEEECCCCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEcCCCCHHH
Confidence            4678999999987664   33344566999999998 555555554444332             356677767666543


Q ss_pred             cc-------cCCCCccEEEEccccc
Q 028673          138 IK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      ..       ...++.|+++.+--+.
T Consensus        90 v~~~~~~~~~~~g~iD~lv~nAg~~  114 (271)
T 4ibo_A           90 IIEAFARLDEQGIDVDILVNNAGIQ  114 (271)
T ss_dssp             HHHHHHHHHHHTCCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCC
Confidence            21       1134789998775543

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=88.43  E-value=0.9  Score=35.42  Aligned_cols=82  Identities=20%  Similarity=0.290  Sum_probs=50.2

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|..+..+.....+...             ..++.+...|..+.+.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~~~   93 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADG-------------GGSAEAVVADLADLEG   93 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTT-------------TCEEEEEECCTTCHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHH
Confidence            35678999999987764   3444456699999999743333333333222             2357777777776543


Q ss_pred             ccc------CCCCccEEEEccccc
Q 028673          138 IKA------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~------~~~~fD~Ii~~d~~y  155 (205)
                      ...      ..+++|+++.+--+.
T Consensus        94 v~~~~~~~~~~g~iD~lv~nAg~~  117 (273)
T 3uf0_A           94 AANVAEELAATRRVDVLVNNAGII  117 (273)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHhcCCCcEEEECCCCC
Confidence            211      114789998775444

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=88.41  E-value=2.9  Score=34.05  Aligned_cols=93  Identities=16%  Similarity=0.089  Sum_probs=54.0

Q ss_pred             CCCCeEEEeCC-C-ccHHHHHHHHh-CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC--
Q 028673           63 LKGKRVIELGA-G-CGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--  137 (205)
Q Consensus        63 ~~~~~VLdlGc-G-tGl~sl~~a~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~--  137 (205)
                      .+|.+||=+|+ | .|++.+.+|+. |++|+++.-++-++.+++    .+.              -.+.  +..+.+.  
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----lGa--------------~~vi--~~~~~~~~~  222 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKS----RGA--------------EEVF--DYRAPNLAQ  222 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH----TTC--------------SEEE--ETTSTTHHH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHH----cCC--------------cEEE--ECCCchHHH
Confidence            47889999999 4 58888887764 889888754444444432    221              1122  2222110  


Q ss_pred             -c-ccCCCCccEEEEcccccCCcChHhHHHHHHHhh-CCCcEEEEEE
Q 028673          138 -I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTILVMF  181 (205)
Q Consensus       138 -~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l-~~~g~~~i~~  181 (205)
                       . ....+.+|+|+-+      -.-...++...+.+ +++|+++..-
T Consensus       223 ~v~~~t~g~~d~v~d~------~g~~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          223 TIRTYTKNNLRYALDC------ITNVESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             HHHHHTTTCCCEEEES------SCSHHHHHHHHHHSCTTCEEEEESS
T ss_pred             HHHHHccCCccEEEEC------CCchHHHHHHHHHhhcCCCEEEEEe
Confidence             0 0112358988854      22345566666677 6899887653

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=88.40  E-value=1.1  Score=34.69  Aligned_cols=84  Identities=11%  Similarity=-0.034  Sum_probs=52.5

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+....           ...++.+...|..+.+
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dv~~~~   72 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRF-----------PGARLFASVCDVLDAL   72 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS-----------TTCCEEEEECCTTCHH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----------CCceEEEEeCCCCCHH
Confidence            35678999999998764   23344566999999998 555555555444311           0124677777777654


Q ss_pred             Ccc-------cCCCCccEEEEccccc
Q 028673          137 HIK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      ...       ..-++.|+++.+--+.
T Consensus        73 ~v~~~~~~~~~~~g~id~lvnnAg~~   98 (265)
T 3lf2_A           73 QVRAFAEACERTLGCASILVNNAGQG   98 (265)
T ss_dssp             HHHHHHHHHHHHHCSCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            321       1124789988775443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=88.34  E-value=1.2  Score=31.47  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=25.0

Q ss_pred             CCCCCCCeEEEeCCCc-cH-HHHHHHHhCCEEEEEcC-cchH
Q 028673           60 PSKLKGKRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVL   98 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGt-Gl-~sl~~a~~g~~v~~~D~-~~~l   98 (205)
                      +....+++|+=+|||. |. ++..+.+.|.+|+++|. ++.+
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~   55 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAF   55 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGG
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence            3455778999999874 42 23344456889999998 5543

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=88.28  E-value=0.94  Score=35.46  Aligned_cols=82  Identities=12%  Similarity=0.074  Sum_probs=49.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-C
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~  136 (205)
                      ..++++||=-|++.|+   ++..+++.|++|++++. ++-.+.+...+...+            ..++.+...|..+. +
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~~~   76 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN------------HENVVFHQLDVTDPIA   76 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------------CCSEEEEECCTTSCHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------------CCceEEEEccCCCcHH
Confidence            4568899999987664   23334456999999998 554444444443321            23678888888776 3


Q ss_pred             Ccc-------cCCCCccEEEEccccc
Q 028673          137 HIK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      ...       ...+++|++|.+--+.
T Consensus        77 ~v~~~~~~~~~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           77 TMSSLADFIKTHFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCccc
Confidence            211       1124799998876543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=88.25  E-value=2.1  Score=32.40  Aligned_cols=80  Identities=16%  Similarity=0.214  Sum_probs=50.9

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++++++|=.|++.|+   ++..+++.|++|++++. ++..+.+...++..+             .++.+...|..+.+..
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~   69 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG-------------FKARGLVLNISDIESI   69 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEecCCCHHHH
Confidence            367889999987664   23344556999999998 555555555444432             3577778777665432


Q ss_pred             c-------cCCCCccEEEEccccc
Q 028673          139 K-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d~~y  155 (205)
                      .       ...+++|+++.+--+.
T Consensus        70 ~~~~~~~~~~~~~id~li~~Ag~~   93 (247)
T 3lyl_A           70 QNFFAEIKAENLAIDILVNNAGIT   93 (247)
T ss_dssp             HHHHHHHHHTTCCCSEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCC
Confidence            1       1235789998775554

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=88.16  E-value=1  Score=34.51  Aligned_cols=82  Identities=21%  Similarity=0.240  Sum_probs=50.3

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeec--CC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW--GN  134 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw--~~  134 (205)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+.            .++.+...|.  .+
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------------~~~~~~~~D~~~~~   75 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG------------RQPQWFILDLLTCT   75 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS------------CCCEEEECCTTTCC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC------------CCceEEEEecccCC
Confidence            45688999999987664   23344556999999998 5555555544443321            2456777666  33


Q ss_pred             CCCcc-------cCCCCccEEEEcccc
Q 028673          135 EDHIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       135 ~~~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      .+...       ..-++.|+++.+--+
T Consensus        76 ~~~~~~~~~~~~~~~g~id~lv~nAg~  102 (252)
T 3f1l_A           76 SENCQQLAQRIAVNYPRLDGVLHNAGL  102 (252)
T ss_dssp             HHHHHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence            32111       113478999877544

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=88.15  E-value=0.8  Score=35.70  Aligned_cols=80  Identities=14%  Similarity=0.094  Sum_probs=48.9

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+.
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~~~~~   85 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG-------------VEADGRTCDVRSVPE   85 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEECCCCCHHH
Confidence            3578899999987653   23334456999999998 554444444443321             246777777766543


Q ss_pred             cc-------cCCCCccEEEEcccc
Q 028673          138 IK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ..       ..-+++|+++.+--+
T Consensus        86 v~~~~~~~~~~~g~iD~lv~~Ag~  109 (277)
T 2rhc_B           86 IEALVAAVVERYGPVDVLVNNAGR  109 (277)
T ss_dssp             HHHHHHHHHHHTCSCSEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            21       112478998876543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=87.86  E-value=0.83  Score=35.23  Aligned_cols=80  Identities=19%  Similarity=0.192  Sum_probs=48.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+...+...             ..++.+...|..+.+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~   70 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK-------------GVEARSYVCDVTSEEA   70 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-------------TSCEEEEECCTTCHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHH
Confidence            3578899999987664   23334456999999998 55454444433322             1356777777766542


Q ss_pred             cc-------cCCCCccEEEEcccc
Q 028673          138 IK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ..       ..-+++|+++.+--+
T Consensus        71 ~~~~~~~~~~~~g~id~lv~nAg~   94 (262)
T 1zem_A           71 VIGTVDSVVRDFGKIDFLFNNAGY   94 (262)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            21       012478999876543

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=87.81  E-value=1.8  Score=32.47  Aligned_cols=79  Identities=13%  Similarity=0.114  Sum_probs=48.0

Q ss_pred             CCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        65 ~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++++|=-|++.|+   ++..+++.|++|++++. ++-++.+...+....            ..++.+...|..+.+....
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~v~~   69 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ------------GVEVFYHHLDVSKAESVEE   69 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCeEEEEEeccCCHHHHHH
Confidence            5788888987653   23334456999999998 555555444443221            1357777877776543221


Q ss_pred             C-------CCCccEEEEccccc
Q 028673          141 V-------APPFDYIIGTDVVY  155 (205)
Q Consensus       141 ~-------~~~fD~Ii~~d~~y  155 (205)
                      .       -+++|+++.+--+.
T Consensus        70 ~~~~~~~~~g~id~li~~Ag~~   91 (235)
T 3l77_A           70 FSKKVLERFGDVDVVVANAGLG   91 (235)
T ss_dssp             HCC-HHHHHSSCSEEEECCCCC
T ss_pred             HHHHHHHhcCCCCEEEECCccc
Confidence            1       13789998775543

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=87.81  E-value=0.93  Score=34.40  Aligned_cols=83  Identities=17%  Similarity=0.242  Sum_probs=50.1

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeec--C
Q 028673           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW--G  133 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw--~  133 (205)
                      +..+++++||=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...+            ..++.+...|.  .
T Consensus         9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~d~d~~   76 (247)
T 3i1j_A            9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG------------QPQPLIIALNLENA   76 (247)
T ss_dssp             TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------------SCCCEEEECCTTTC
T ss_pred             CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC------------CCCceEEEeccccC
Confidence            456788999999987664   23344456999999998 555555555554432            13456666555  3


Q ss_pred             CCCCcc-------cCCCCccEEEEcccc
Q 028673          134 NEDHIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       134 ~~~~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      +.+...       ..-+++|+++.+--+
T Consensus        77 ~~~~~~~~~~~~~~~~g~id~lv~nAg~  104 (247)
T 3i1j_A           77 TAQQYRELAARVEHEFGRLDGLLHNASI  104 (247)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence            222111       112478999877554

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=87.76  E-value=2.1  Score=34.59  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=25.0

Q ss_pred             CCCC-CeEEEeCC-C-ccHHHHHHHH-hCCEEEEEcC
Q 028673           62 KLKG-KRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ   94 (205)
Q Consensus        62 ~~~~-~~VLdlGc-G-tGl~sl~~a~-~g~~v~~~D~   94 (205)
                      ...| .+||=.|+ | .|++.+.+|+ .|++|+++.-
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~  200 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIR  200 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEec
Confidence            3367 89999998 5 4888887776 4899777764

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=87.73  E-value=1.1  Score=34.48  Aligned_cols=82  Identities=18%  Similarity=0.190  Sum_probs=49.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+...+....           ...++.+...|..+.+.
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~~~~~   78 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA-----------PDAEVLTTVADVSDEAQ   78 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC-----------TTCCEEEEECCTTSHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----------CCceEEEEEccCCCHHH
Confidence            4578899999987663   23344456999999998 554444444443320           01356777777766543


Q ss_pred             ccc-------CCCCccEEEEcccc
Q 028673          138 IKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ...       .-+++|+++.+--+
T Consensus        79 v~~~~~~~~~~~g~id~lv~nAg~  102 (267)
T 1iy8_A           79 VEAYVTATTERFGRIDGFFNNAGI  102 (267)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCc
Confidence            211       12378999876543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=87.69  E-value=3  Score=32.69  Aligned_cols=81  Identities=17%  Similarity=0.152  Sum_probs=48.4

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcCc-c--hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~~-~--~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~  134 (205)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|.. +  ..+.+...++..+             .++.+...|..+
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~d  111 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG-------------RKAVLLPGDLSD  111 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT-------------CCEEECCCCTTS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC-------------CcEEEEEecCCC
Confidence            35678999999987664   233445669999999873 3  2333333333332             356666766665


Q ss_pred             CCCcc-------cCCCCccEEEEcccc
Q 028673          135 EDHIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       135 ~~~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      .+...       ..-++.|+++.+--+
T Consensus       112 ~~~v~~~~~~~~~~~g~iD~lv~nAg~  138 (294)
T 3r3s_A          112 ESFARSLVHKAREALGGLDILALVAGK  138 (294)
T ss_dssp             HHHHHHHHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            43221       112478998877544

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=87.67  E-value=2.1  Score=33.32  Aligned_cols=78  Identities=26%  Similarity=0.339  Sum_probs=48.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+  .              .++.+...|..+.+.
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~--------------~~~~~~~~Dv~d~~~   89 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI--G--------------CGAAACRVDVSDEQQ   89 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--C--------------SSCEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--C--------------CcceEEEecCCCHHH
Confidence            4578999999988764   34445567999999998 55444333322  1              246777777766543


Q ss_pred             ccc-------CCCCccEEEEccccc
Q 028673          138 IKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ...       .-++.|+++.+--+.
T Consensus        90 v~~~~~~~~~~~g~iD~lvnnAg~~  114 (277)
T 3gvc_A           90 IIAMVDACVAAFGGVDKLVANAGVV  114 (277)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            211       124789998775543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=87.62  E-value=0.82  Score=30.11  Aligned_cols=68  Identities=21%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             CCCeEEEeCCCccHHHHHHH----HhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMA----LLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a----~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++|+=+|+|  .+|..++    +.| .+|+++|. ++-++.+.    ..               .+.....|..+.+.
T Consensus         4 ~~~~v~I~G~G--~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~~---------------~~~~~~~d~~~~~~   62 (118)
T 3ic5_A            4 MRWNICVVGAG--KIGQMIAALLKTSSNYSVTVADHDLAALAVLN----RM---------------GVATKQVDAKDEAG   62 (118)
T ss_dssp             TCEEEEEECCS--HHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----TT---------------TCEEEECCTTCHHH
T ss_pred             CcCeEEEECCC--HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----hC---------------CCcEEEecCCCHHH
Confidence            35689999994  4554443    457 67999998 54433332    11               24555655554432


Q ss_pred             cccCCCCccEEEEcc
Q 028673          138 IKAVAPPFDYIIGTD  152 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d  152 (205)
                      ....-..+|+|+.+-
T Consensus        63 ~~~~~~~~d~vi~~~   77 (118)
T 3ic5_A           63 LAKALGGFDAVISAA   77 (118)
T ss_dssp             HHHHTTTCSEEEECS
T ss_pred             HHHHHcCCCEEEECC
Confidence            222234789998774

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=87.59  E-value=0.49  Score=42.82  Aligned_cols=40  Identities=25%  Similarity=0.275  Sum_probs=33.5

Q ss_pred             CeEEEeCCCccHHHHHHHHhC------CE-EEEEcC-cchHHHHHHHH
Q 028673           66 KRVIELGAGCGVAGFGMALLG------CN-VITTDQ-IEVLPLLKRNV  105 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g------~~-v~~~D~-~~~l~~~~~n~  105 (205)
                      .+||||-||.|-+++-+.+.|      .+ +.++|+ +.+++..+.|.
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            479999999998888887776      45 789999 77888888874

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=87.59  E-value=0.89  Score=34.93  Aligned_cols=81  Identities=14%  Similarity=0.156  Sum_probs=48.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~D~~~~~   76 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEG-------------LSVTGTVCHVGKAE   76 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEccCCCHH
Confidence            34578899999986653   22334456999999998 554444444443321             24666777766554


Q ss_pred             Cccc-------CCCCccEEEEcccc
Q 028673          137 HIKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ....       .-+++|+++.+--+
T Consensus        77 ~~~~~~~~~~~~~g~iD~lv~~Ag~  101 (260)
T 2zat_A           77 DRERLVAMAVNLHGGVDILVSNAAV  101 (260)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            2211       11378988876443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=87.55  E-value=2.1  Score=35.49  Aligned_cols=40  Identities=28%  Similarity=0.410  Sum_probs=28.7

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEEcC-cchHHHHH
Q 028673           63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLK  102 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a-~~g~~v~~~D~-~~~l~~~~  102 (205)
                      .++.+|+=+|+|. |......+ ..|++|++.|. ++-++.++
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~  224 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVR  224 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            3678999999984 65544444 45999999999 66555554

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=87.51  E-value=1.7  Score=33.38  Aligned_cols=77  Identities=17%  Similarity=0.328  Sum_probs=47.1

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+..
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~v   69 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG-------------GQCVPVVCDSSQESEV   69 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS-------------SEEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC-------------CceEEEECCCCCHHHH
Confidence            467889999977653   23334456999999998 554444444443321             2467777777665432


Q ss_pred             cc-------C-CCCccEEEEcc
Q 028673          139 KA-------V-APPFDYIIGTD  152 (205)
Q Consensus       139 ~~-------~-~~~fD~Ii~~d  152 (205)
                      ..       . .+++|+++.+-
T Consensus        70 ~~~~~~~~~~~~g~id~lvnnA   91 (260)
T 2qq5_A           70 RSLFEQVDREQQGRLDVLVNNA   91 (260)
T ss_dssp             HHHHHHHHHHHTTCCCEEEECC
T ss_pred             HHHHHHHHHhcCCCceEEEECC
Confidence            10       0 35789998775

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=87.47  E-value=0.67  Score=36.22  Aligned_cols=82  Identities=11%  Similarity=0.110  Sum_probs=48.8

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...             ..++.+...|..+.+
T Consensus        20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~d~~   86 (279)
T 3sju_A           20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA-------------GHDVDGSSCDVTSTD   86 (279)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-------------TCCEEEEECCTTCHH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEECCCCCHH
Confidence            34568899999987764   23444566999999998 55555444444332             235777787777654


Q ss_pred             Cccc-------CCCCccEEEEccccc
Q 028673          137 HIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ....       .-++.|+++.+--+.
T Consensus        87 ~v~~~~~~~~~~~g~id~lv~nAg~~  112 (279)
T 3sju_A           87 EVHAAVAAAVERFGPIGILVNSAGRN  112 (279)
T ss_dssp             HHHHHHHHHHHHHCSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCcEEEECCCCC
Confidence            3211       124789988775443

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=87.32  E-value=1.1  Score=34.11  Aligned_cols=78  Identities=17%  Similarity=0.245  Sum_probs=47.3

Q ss_pred             CCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      +++++||=.|++.| +|..+    ++.|++|+++|. ++..+.+...++..+             .++.+...|..+.+.
T Consensus        11 l~~k~vlItGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~D~~~~~~   76 (260)
T 3awd_A           11 LDNRVAIVTGGAQN-IGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG-------------HDVSSVVMDVTNTES   76 (260)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             CCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEecCCCHHH
Confidence            46889999997655 34444    456999999998 544444444333321             357777877766543


Q ss_pred             ccc-------CCCCccEEEEcccc
Q 028673          138 IKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ...       ..+++|+++.+--+
T Consensus        77 ~~~~~~~~~~~~~~id~vi~~Ag~  100 (260)
T 3awd_A           77 VQNAVRSVHEQEGRVDILVACAGI  100 (260)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            211       11378999876443

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=87.30  E-value=0.94  Score=36.58  Aligned_cols=45  Identities=20%  Similarity=0.131  Sum_probs=34.9

Q ss_pred             CCeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhh
Q 028673           65 GKRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNT  109 (205)
Q Consensus        65 ~~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~  109 (205)
                      -.+|-=+|||+ | -++..+|..|.+|+..|. ++.++.+..+++.+.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l   53 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEM   53 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence            35799999997 4 456677788999999999 778887777776553

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=87.30  E-value=0.85  Score=37.14  Aligned_cols=92  Identities=22%  Similarity=0.168  Sum_probs=56.5

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ...|.+||=+|+|. |+..+.+++ .|++|+++|. ++-++.+++    .+.              -.+  .+ .+.+..
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa--------------~~v--i~-~~~~~~  245 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA----LGA--------------DHG--IN-RLEEDW  245 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HTC--------------SEE--EE-TTTSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH----cCC--------------CEE--Ec-CCcccH
Confidence            44688999999875 777777776 4899999998 555555433    221              011  12 111111


Q ss_pred             ----c--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 ----K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ----~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                          .  .....+|+|+-+--       ...+....++++++|++++.-
T Consensus       246 ~~~v~~~~~g~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          246 VERVYALTGDRGADHILEIAG-------GAGLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             HHHHHHHHTTCCEEEEEEETT-------SSCHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHhCCCCceEEEECCC-------hHHHHHHHHHhhcCCEEEEEe
Confidence                0  11347998886521       234556667889999988764

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=87.18  E-value=0.45  Score=37.38  Aligned_cols=81  Identities=26%  Similarity=0.269  Sum_probs=50.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++++||=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...             ..++.+...|..+.+.
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~   71 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG-------------GGEAAALAGDVGDEAL   71 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT-------------TCCEEECCCCTTCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEECCCCCHHH
Confidence            4578999999987764   33444566999999998 55555444433322             2356677766666542


Q ss_pred             ccc-------CCCCccEEEEccccc
Q 028673          138 IKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ...       .-+++|+++.+--+.
T Consensus        72 v~~~~~~~~~~~g~iD~lvnnAg~~   96 (280)
T 3tox_A           72 HEALVELAVRRFGGLDTAFNNAGAL   96 (280)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            211       124789988775443

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=87.18  E-value=1.9  Score=34.70  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=24.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCC-EEEEEcC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGC-NVITTDQ   94 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~-~v~~~D~   94 (205)
                      ..++++++|=+|+| |.   +...+++.|+ +|+.++.
T Consensus       150 ~~l~gk~~lVlGaG-G~g~aia~~L~~~Ga~~V~i~nR  186 (315)
T 3tnl_A          150 HDIIGKKMTICGAG-GAATAICIQAALDGVKEISIFNR  186 (315)
T ss_dssp             CCCTTSEEEEECCS-HHHHHHHHHHHHTTCSEEEEEEC
T ss_pred             CCccCCEEEEECCC-hHHHHHHHHHHHCCCCEEEEEEC
Confidence            35688999999997 42   3344556788 7888877

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=87.14  E-value=1.2  Score=34.42  Aligned_cols=81  Identities=20%  Similarity=0.305  Sum_probs=48.9

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHH-HHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNV-EWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~-~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ..++++++|=.|++.|+   ++..+++.|++|++++. ++.++.+...+ +..+             .++.+...|..+.
T Consensus        17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-------------~~~~~~~~Dl~~~   83 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG-------------VETMAFRCDVSNY   83 (267)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-------------CCEEEEECCTTCH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-------------CeEEEEEcCCCCH
Confidence            45678899999987653   23334456999999998 55444444433 2221             2466677777665


Q ss_pred             CCccc-------CCCCccEEEEcccc
Q 028673          136 DHIKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       136 ~~~~~-------~~~~fD~Ii~~d~~  154 (205)
                      +....       .-+++|+++.+--+
T Consensus        84 ~~v~~~~~~~~~~~g~iD~lvnnAg~  109 (267)
T 1vl8_A           84 EEVKKLLEAVKEKFGKLDTVVNAAGI  109 (267)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            43211       12478998876544

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=87.12  E-value=0.82  Score=42.65  Aligned_cols=41  Identities=17%  Similarity=0.268  Sum_probs=34.2

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCC-E-EEEEcC-cchHHHHHHHH
Q 028673           65 GKRVIELGAGCGVAGFGMALLGC-N-VITTDQ-IEVLPLLKRNV  105 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~-~-v~~~D~-~~~l~~~~~n~  105 (205)
                      ..+++||.||.|-+++.+.+.|. + |.++|+ +.+++..+.|.
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~  583 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN  583 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence            34899999999999999999997 6 789999 66777776663

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=87.12  E-value=4.4  Score=31.68  Aligned_cols=100  Identities=22%  Similarity=0.265  Sum_probs=51.3

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+|.=+|+|. | .++..+++.|.+|++.|. ++.++.+++    .+..... .      ..............+....-
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~-~------~~~~~~~~~~~~~~~~~~~~   72 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRK----NGLIADF-N------GEEVVANLPIFSPEEIDHQN   72 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----HCEEEEE-T------TEEEEECCCEECGGGCCTTS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh----CCEEEEe-C------CCeeEecceeecchhhcccC
Confidence            4688899885 3 445555667889999998 655444432    2221000 0      00000000000111111111


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      ..+|+|+.+=.-   .....+++.+...++++..++.
T Consensus        73 ~~~d~vi~~v~~---~~~~~v~~~l~~~l~~~~~iv~  106 (316)
T 2ew2_A           73 EQVDLIIALTKA---QQLDAMFKAIQPMITEKTYVLC  106 (316)
T ss_dssp             CCCSEEEECSCH---HHHHHHHHHHGGGCCTTCEEEE
T ss_pred             CCCCEEEEEecc---ccHHHHHHHHHHhcCCCCEEEE
Confidence            278999887332   2456777777777877765443

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=87.11  E-value=0.78  Score=35.15  Aligned_cols=78  Identities=21%  Similarity=0.190  Sum_probs=47.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+..                +......|..+.+.
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~~~~~~Dv~d~~~   69 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD----------------NGKGMALNVTNPES   69 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG----------------GEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----------------cceEEEEeCCCHHH
Confidence            4578999999987764   33344566999999998 5444433332221                34566666666543


Q ss_pred             ccc-------CCCCccEEEEccccc
Q 028673          138 IKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ...       .-++.|+++.+--+.
T Consensus        70 v~~~~~~~~~~~g~iD~lv~nAg~~   94 (248)
T 3op4_A           70 IEAVLKAITDEFGGVDILVNNAGIT   94 (248)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            211       124789988775443

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=87.06  E-value=0.83  Score=35.70  Aligned_cols=78  Identities=23%  Similarity=0.265  Sum_probs=47.4

Q ss_pred             CCCCCCeEEEeCCCccHHHHH----HHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~----~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ...++++||=.|++.|+ |..    +++.|++|++++. ++.++.+...+...+            ..++.+...|..+.
T Consensus        24 ~~~~~k~vlITGasggI-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dl~d~   90 (286)
T 1xu9_A           24 EMLQGKKVIVTGASKGI-GREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG------------AASAHYIAGTMEDM   90 (286)
T ss_dssp             GGGTTCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------------CSEEEEEECCTTCH
T ss_pred             hhcCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC------------CCceEEEeCCCCCH
Confidence            34578899999986553 433    3456999999998 555554444433321            12467777776664


Q ss_pred             CCccc-------CCCCccEEEEc
Q 028673          136 DHIKA-------VAPPFDYIIGT  151 (205)
Q Consensus       136 ~~~~~-------~~~~fD~Ii~~  151 (205)
                      +....       ..+++|++|.+
T Consensus        91 ~~v~~~~~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           91 TFAEQFVAQAGKLMGGLDMLILN  113 (286)
T ss_dssp             HHHHHHHHHHHHHHTSCSEEEEC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEC
Confidence            32211       11478999866

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=87.01  E-value=0.45  Score=37.02  Aligned_cols=40  Identities=0%  Similarity=-0.022  Sum_probs=29.6

Q ss_pred             CCCccEEEEcccccCC-c-------------ChHhHHHHHHHhhCCCcEEEEEE
Q 028673          142 APPFDYIIGTDVVYAE-H-------------LLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~-~-------------~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .++||+|+..+++... .             .....++.+.++|+|+|.+++..
T Consensus        21 ~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A           21 NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (260)
T ss_dssp             TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            4589999996655433 1             34567778889999999998875

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=86.81  E-value=1  Score=34.62  Aligned_cols=80  Identities=16%  Similarity=0.235  Sum_probs=47.6

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+...+....            ..++.+...|..+.+..
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~~   72 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF------------GVRVLEVAVDVATPEGV   72 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTSHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc------------CCceEEEEcCCCCHHHH
Confidence            468899999987653   23334456999999998 554444443333220            12467777777665432


Q ss_pred             cc-------CCCCccEEEEcccc
Q 028673          139 KA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       139 ~~-------~~~~fD~Ii~~d~~  154 (205)
                      ..       .-+++|+++.+--+
T Consensus        73 ~~~~~~~~~~~g~id~lv~~Ag~   95 (263)
T 3ai3_A           73 DAVVESVRSSFGGADILVNNAGT   95 (263)
T ss_dssp             HHHHHHHHHHHSSCSEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            11       11378998877544

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=86.72  E-value=2.7  Score=32.30  Aligned_cols=79  Identities=13%  Similarity=0.127  Sum_probs=51.9

Q ss_pred             CCCCCeEEEeCCCc--cH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           62 KLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        62 ~~~~~~VLdlGcGt--Gl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      .++||++|=-|++.  |+   ++..+++.|++|+.+|. ++.++.+.+-++..+            ..++.+...|..+.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~   70 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN------------QPEAHLYQIDVQSD   70 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT------------CSSCEEEECCTTCH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------------CCcEEEEEccCCCH
Confidence            56899999999632  42   45566678999999999 666666665554332            23567777777765


Q ss_pred             CCcc-------cCCCCccEEEEcc
Q 028673          136 DHIK-------AVAPPFDYIIGTD  152 (205)
Q Consensus       136 ~~~~-------~~~~~fD~Ii~~d  152 (205)
                      ++..       ..-++.|+++.+-
T Consensus        71 ~~v~~~~~~~~~~~G~iD~lvnnA   94 (256)
T 4fs3_A           71 EEVINGFEQIGKDVGNIDGVYHSI   94 (256)
T ss_dssp             HHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEecc
Confidence            4321       1125789888663

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=86.71  E-value=0.83  Score=35.84  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=49.1

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...             ..++.+...|..+.+.
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~d~~~   91 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA-------------GGQAIALEADVSDELQ   91 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT-------------TCCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHH
Confidence            3467899999987764   23344566999999998 55554444433322             2357777877776543


Q ss_pred             cc-------cCCCCccEEEEcccc
Q 028673          138 IK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ..       ..-++.|+++.+--+
T Consensus        92 v~~~~~~~~~~~g~iD~lVnnAg~  115 (283)
T 3v8b_A           92 MRNAVRDLVLKFGHLDIVVANAGI  115 (283)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            21       112478998876544

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=86.71  E-value=2.7  Score=32.29  Aligned_cols=89  Identities=18%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .++++||=.|++.|+   +...+++.|++|+++|. ++..+.+...+....           ...++.+...|..+.+..
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~D~~~~~~v   73 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF-----------EPQKTLFIQCDVADQQQL   73 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS-----------CGGGEEEEECCTTSHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhc-----------CCCceEEEecCCCCHHHH
Confidence            467899999986553   23334456999999998 444433333322110           012467777777665432


Q ss_pred             cc-------CCCCccEEEEcccccCCcChHh
Q 028673          139 KA-------VAPPFDYIIGTDVVYAEHLLEP  162 (205)
Q Consensus       139 ~~-------~~~~fD~Ii~~d~~y~~~~~~~  162 (205)
                      ..       .-+++|+++.+--+...+.++.
T Consensus        74 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~  104 (267)
T 2gdz_A           74 RDTFRKVVDHFGRLDILVNNAGVNNEKNWEK  104 (267)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCSSSHHH
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCChhhHHH
Confidence            11       1146899988765554455443

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=86.70  E-value=0.6  Score=35.58  Aligned_cols=79  Identities=19%  Similarity=0.247  Sum_probs=47.7

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      +...++++||=.|++.|+   ++..+++.|++|+++|. ++.++.+...+.                .++.+...|..+.
T Consensus         9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~D~~~~   72 (249)
T 3f9i_A            9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK----------------DNYTIEVCNLANK   72 (249)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC----------------SSEEEEECCTTSH
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc----------------cCccEEEcCCCCH
Confidence            456788999999987664   23344556999999998 554443332221                2466666666554


Q ss_pred             CCcc---cCCCCccEEEEcccc
Q 028673          136 DHIK---AVAPPFDYIIGTDVV  154 (205)
Q Consensus       136 ~~~~---~~~~~fD~Ii~~d~~  154 (205)
                      +...   ....+.|+++.+--+
T Consensus        73 ~~~~~~~~~~~~id~li~~Ag~   94 (249)
T 3f9i_A           73 EECSNLISKTSNLDILVCNAGI   94 (249)
T ss_dssp             HHHHHHHHTCSCCSEEEECCC-
T ss_pred             HHHHHHHHhcCCCCEEEECCCC
Confidence            3221   112478998876544

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=86.59  E-value=1.2  Score=34.52  Aligned_cols=83  Identities=22%  Similarity=0.313  Sum_probs=49.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+.....           ...+.....|..+.+.
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~D~~~~~~   75 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYP-----------DAILQPVVADLGTEQG   75 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCT-----------TCEEEEEECCTTSHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC-----------CceEEEEecCCCCHHH
Confidence            4578899999987664   23344556999999998 5555554444443311           1345666666655432


Q ss_pred             cc---cCCCCccEEEEccccc
Q 028673          138 IK---AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~---~~~~~fD~Ii~~d~~y  155 (205)
                      ..   ..-++.|+++.+--+.
T Consensus        76 ~~~~~~~~g~id~lv~nAg~~   96 (267)
T 3t4x_A           76 CQDVIEKYPKVDILINNLGIF   96 (267)
T ss_dssp             HHHHHHHCCCCSEEEECCCCC
T ss_pred             HHHHHHhcCCCCEEEECCCCC
Confidence            11   1134789988775443

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=86.56  E-value=0.45  Score=38.36  Aligned_cols=43  Identities=7%  Similarity=0.120  Sum_probs=33.2

Q ss_pred             CCCccEEEEcccccCCc--------------ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAEH--------------LLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~--------------~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .++||+|++.+++....              .+...++.+.++|+|+|.+++....+
T Consensus        31 ~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           31 EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            56899999976664331              35678888899999999999987654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=86.36  E-value=6.3  Score=31.31  Aligned_cols=100  Identities=17%  Similarity=0.173  Sum_probs=55.3

Q ss_pred             CCCCCeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEE-EEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-VELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~-~~~dw~~~~~  137 (205)
                      .+...+|.=+|+|. | .++..+++.|.+|++. . ++.++.+++    ++....  .+      .... ........  
T Consensus        16 ~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~----~g~~~~--~~------~~~~~~~~~~~~~--   80 (318)
T 3hwr_A           16 YFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEA----TGLRLE--TQ------SFDEQVKVSASSD--   80 (318)
T ss_dssp             ----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHH----HCEEEE--CS------SCEEEECCEEESC--
T ss_pred             hccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHh----CCeEEE--cC------CCcEEEeeeeeCC--
Confidence            44567899999996 4 6677777889999998 7 555554443    222110  00      0010 00000111  


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ... ...+|+|+.+=.-+   ..+.+++.+...++++..++..
T Consensus        81 ~~~-~~~~D~vilavk~~---~~~~~l~~l~~~l~~~~~iv~~  119 (318)
T 3hwr_A           81 PSA-VQGADLVLFCVKST---DTQSAALAMKPALAKSALVLSL  119 (318)
T ss_dssp             GGG-GTTCSEEEECCCGG---GHHHHHHHHTTTSCTTCEEEEE
T ss_pred             HHH-cCCCCEEEEEcccc---cHHHHHHHHHHhcCCCCEEEEe
Confidence            111 24789998873333   5678888888888887655443

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=86.34  E-value=0.46  Score=39.03  Aligned_cols=40  Identities=25%  Similarity=0.326  Sum_probs=26.5

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHH-HHhCCEEEEEcC-cchHHHH
Q 028673           62 KLKGKRVIELGAGC-GVAGFGM-ALLGCNVITTDQ-IEVLPLL  101 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~-a~~g~~v~~~D~-~~~l~~~  101 (205)
                      .+++++|+=+|+|. |...... ...|++|+++|. ++-++.+
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~  205 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYL  205 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            35778999999963 4333322 245899999998 5544443

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=86.19  E-value=1.2  Score=34.78  Aligned_cols=83  Identities=17%  Similarity=0.193  Sum_probs=51.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++++||=-|++.|+   ++..+++.|++|+++|. ++.++.+...++..+.          ...++.+...|..+.+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----------~~~~~~~~~~Dv~~~~~   77 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGA----------NGGAIRYEPTDITNEDE   77 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCC----------SSCEEEEEECCTTSHHH
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----------CCceEEEEeCCCCCHHH
Confidence            4578999999987664   23344566999999998 5555555544443211          11257777777766543


Q ss_pred             ccc-------CCCCccEEEEcccc
Q 028673          138 IKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ...       .-++.|+++.+--+
T Consensus        78 v~~~~~~~~~~~g~id~lv~nAg~  101 (281)
T 3svt_A           78 TARAVDAVTAWHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCc
Confidence            211       12478998876544

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=86.18  E-value=0.98  Score=35.36  Aligned_cols=81  Identities=22%  Similarity=0.321  Sum_probs=48.1

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+.            ..+.+...|..+.+.
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~------------~~~~~~~~Dv~d~~~   97 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTG------------NIVRAVVCDVGDPDQ   97 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS------------SCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------------CeEEEEEcCCCCHHH
Confidence            4578999999987664   23344456999999998 5555555554443321            234777777776543


Q ss_pred             ccc-------CCCCccEEEEcccc
Q 028673          138 IKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ...       .-+++|+++.+--+
T Consensus        98 v~~~~~~~~~~~g~iD~lvnnAG~  121 (281)
T 4dry_A           98 VAALFAAVRAEFARLDLLVNNAGS  121 (281)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            211       12478999877544

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=86.13  E-value=1.1  Score=34.13  Aligned_cols=79  Identities=24%  Similarity=0.327  Sum_probs=47.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+++++||=.|++.| +|..++    +.|++|+++|. ++.++.+...+...+             .++.+...|..+.+
T Consensus         8 ~~~~~~vlVtGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~   73 (255)
T 1fmc_A            8 RLDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-------------GQAFACRCDITSEQ   73 (255)
T ss_dssp             CCTTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC-------------CceEEEEcCCCCHH
Confidence            356788998887544 454444    45889999998 554444444443321             35677777766554


Q ss_pred             CcccC-------CCCccEEEEcccc
Q 028673          137 HIKAV-------APPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~~~-------~~~fD~Ii~~d~~  154 (205)
                      .....       .+++|+|+.+--+
T Consensus        74 ~~~~~~~~~~~~~~~~d~vi~~Ag~   98 (255)
T 1fmc_A           74 ELSALADFAISKLGKVDILVNNAGG   98 (255)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCC
Confidence            32111       1378998876544

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=86.12  E-value=1.7  Score=38.58  Aligned_cols=112  Identities=15%  Similarity=0.092  Sum_probs=57.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHh------------CC--EEEEEcC-cchHHHHHHHHHHhh------hhhccCCCC-C---
Q 028673           65 GKRVIELGAGCGVAGFGMALL------------GC--NVITTDQ-IEVLPLLKRNVEWNT------SRISQMNPG-S---  119 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~------------g~--~v~~~D~-~~~l~~~~~n~~~n~------~~~~~~~~~-~---  119 (205)
                      .-+|+|+|-|+|+..+.+.+.            +.  +++.++. |-..+.+++.....-      ..+...=|. .   
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            358999999999988877653            12  4888887 644444443221100      000000000 0   


Q ss_pred             ---C-CCCceEEEEeecCCCCC-cccC----CCCccEEEEcccc---cCCcC-hHhHHHHHHHhhCCCcEEE
Q 028673          120 ---D-LLGSIQAVELDWGNEDH-IKAV----APPFDYIIGTDVV---YAEHL-LEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       120 ---~-~~~~i~~~~~dw~~~~~-~~~~----~~~fD~Ii~~d~~---y~~~~-~~~ll~~~~~~l~~~g~~~  178 (205)
                         . ..+++. ..+-+++..+ ++..    ..++|.++. |.+   +++++ -..++..+.+++++|+++.
T Consensus       139 ~r~~~~~~~~~-l~l~~gd~~~~l~~~~~~~~~~~da~fl-D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~  208 (689)
T 3pvc_A          139 HRILLADGAIT-LDLWFGDVNTLLPTLDDSLNNQVDAWFL-DGFAPAKNPDMWNEQLFNAMARMTRPGGTFS  208 (689)
T ss_dssp             EEEEETTTTEE-EEEEESCHHHHGGGCCGGGTTCEEEEEE-CSSCC--CCTTCSHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEecCCcEE-EEEEccCHHHHHhhcccccCCceeEEEE-CCCCCCCChhhhhHHHHHHHHHHhCCCCEEE
Confidence               0 001111 1222343321 1111    367999987 332   22332 3578899999999988754

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=86.07  E-value=1.9  Score=34.69  Aligned_cols=89  Identities=21%  Similarity=0.154  Sum_probs=49.9

Q ss_pred             CeEEEe-CCC-ccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc--
Q 028673           66 KRVIEL-GAG-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--  139 (205)
Q Consensus        66 ~~VLdl-GcG-tGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~--  139 (205)
                      ++||=. |+| .|+..+.+++ .|++|+++|. ++-++.+++    .+.              -.+  .+..+.+...  
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----~Ga--------------~~~--~~~~~~~~~~~v  225 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD----IGA--------------AHV--LNEKAPDFEATL  225 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHH----HTC--------------SEE--EETTSTTHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC--------------CEE--EECCcHHHHHHH
Confidence            566644 554 3666666664 4899999998 665565543    221              011  1222211000  


Q ss_pred             -c--CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          140 -A--VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       140 -~--~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                       .  ....+|+|+-+      ... ..+....++++++|++++.-
T Consensus       226 ~~~~~~~g~D~vid~------~g~-~~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          226 REVMKAEQPRIFLDA------VTG-PLASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             HHHHHHHCCCEEEES------SCH-HHHHHHHHHSCTTCEEEECC
T ss_pred             HHHhcCCCCcEEEEC------CCC-hhHHHHHhhhcCCCEEEEEe
Confidence             0  01369988865      112 23466778899999988764

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=85.97  E-value=0.63  Score=35.66  Aligned_cols=78  Identities=22%  Similarity=0.320  Sum_probs=47.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+   +             .++.+...|..+.+.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~~~~~   66 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---G-------------KKARAIAADISDPGS   66 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C-------------TTEEECCCCTTCHHH
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-------------CceEEEEcCCCCHHH
Confidence            4578999999987764   33444566999999998 54443333222   1             246666766665542


Q ss_pred             ccc-------CCCCccEEEEccccc
Q 028673          138 IKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ...       .-+++|+++.+--+.
T Consensus        67 v~~~~~~~~~~~g~id~lv~nAg~~   91 (247)
T 3rwb_A           67 VKALFAEIQALTGGIDILVNNASIV   91 (247)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCC
Confidence            211       124789988765443

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=85.83  E-value=1.1  Score=34.94  Aligned_cols=82  Identities=21%  Similarity=0.180  Sum_probs=48.6

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...+.          ...++.+...|..+.+..
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v   73 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV----------SEKQVNSVVADVTTEDGQ   73 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC----------CCcceEEEEecCCCHHHH
Confidence            467899999987663   23334456999999998 5545444444332210          011567778777765432


Q ss_pred             cc-------CCCCccEEEEcccc
Q 028673          139 KA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       139 ~~-------~~~~fD~Ii~~d~~  154 (205)
                      ..       .-+++|+++.+--+
T Consensus        74 ~~~~~~~~~~~g~iD~lv~nAg~   96 (280)
T 1xkq_A           74 DQIINSTLKQFGKIDVLVNNAGA   96 (280)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCC
Confidence            11       12378999876543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=85.77  E-value=2.6  Score=33.37  Aligned_cols=88  Identities=14%  Similarity=0.080  Sum_probs=51.6

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ...+|.+||=+|+|. |++.+.+|+ .|++|++++-++-++.+++    .+.              -.+.  +  +.+  
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~----lGa--------------~~v~--~--d~~--  194 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQALAAK----RGV--------------RHLY--R--EPS--  194 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH----HTE--------------EEEE--S--SGG--
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEChhhHHHHHH----cCC--------------CEEE--c--CHH--
Confidence            344788999999974 888777776 4899999995344555543    222              1111  1  111  


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                       .....+|+|+-+  .-.    +. .....++++++|+++..
T Consensus       195 -~v~~g~Dvv~d~--~g~----~~-~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          195 -QVTQKYFAIFDA--VNS----QN-AAALVPSLKANGHIICI  228 (315)
T ss_dssp             -GCCSCEEEEECC--------------TTGGGEEEEEEEEEE
T ss_pred             -HhCCCccEEEEC--CCc----hh-HHHHHHHhcCCCEEEEE
Confidence             115578888743  211    11 23455678888887766

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=85.77  E-value=3.9  Score=31.55  Aligned_cols=82  Identities=23%  Similarity=0.226  Sum_probs=49.8

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcCc-------------chHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (205)
                      ..+++++||=-|++.|+   ++..+++.|++|+++|..             +.++.....+...             ..+
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~   75 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI-------------GSR   75 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH-------------TCC
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc-------------CCe
Confidence            45678999999987664   334455669999999863             2223222323222             236


Q ss_pred             eEEEEeecCCCCCccc-------CCCCccEEEEccccc
Q 028673          125 IQAVELDWGNEDHIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       125 i~~~~~dw~~~~~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      +.+...|..+.+....       .-++.|++|.+--+.
T Consensus        76 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  113 (278)
T 3sx2_A           76 IVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIA  113 (278)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            7788877776543221       124789998775443

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=85.76  E-value=0.97  Score=34.98  Aligned_cols=76  Identities=20%  Similarity=0.348  Sum_probs=49.2

Q ss_pred             CCCCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecC
Q 028673           58 FCPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  133 (205)
Q Consensus        58 ~~~~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~  133 (205)
                      |.++.|+||++|==|++.|+   ++..+++.|++|+.+|. ++.++.                   ....++.....|..
T Consensus         4 f~~dlf~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~-------------------~~~~~~~~~~~Dv~   64 (242)
T 4b79_A            4 FQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA-------------------PRHPRIRREELDIT   64 (242)
T ss_dssp             BCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS-------------------CCCTTEEEEECCTT
T ss_pred             CCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh-------------------hhcCCeEEEEecCC
Confidence            34567899999999999885   45555677999999998 543221                   01235667777766


Q ss_pred             CCCCcc---cCCCCccEEEEcc
Q 028673          134 NEDHIK---AVAPPFDYIIGTD  152 (205)
Q Consensus       134 ~~~~~~---~~~~~fD~Ii~~d  152 (205)
                      +.+...   ..-++.|+++.|-
T Consensus        65 ~~~~v~~~~~~~g~iDiLVNNA   86 (242)
T 4b79_A           65 DSQRLQRLFEALPRLDVLVNNA   86 (242)
T ss_dssp             CHHHHHHHHHHCSCCSEEEECC
T ss_pred             CHHHHHHHHHhcCCCCEEEECC
Confidence            543221   1235788887664

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=85.65  E-value=1.3  Score=34.35  Aligned_cols=82  Identities=21%  Similarity=0.259  Sum_probs=51.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cc-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      -.+++++||=.|++.|+   ++..+++.|++|++++. ++ ..+.+...++..+             .++.+...|..+.
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~   91 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKG-------------YKAAVIKFDAASE   91 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-------------CceEEEECCCCCH
Confidence            35678999999988764   23344556999999987 43 4444444444332             3577778777665


Q ss_pred             CCcc-------cCCCCccEEEEccccc
Q 028673          136 DHIK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       136 ~~~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      +...       ...+++|+++.+--+.
T Consensus        92 ~~v~~~~~~~~~~~g~id~li~nAg~~  118 (271)
T 4iin_A           92 SDFIEAIQTIVQSDGGLSYLVNNAGVV  118 (271)
T ss_dssp             HHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            4321       1124789998775543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=85.53  E-value=2.3  Score=32.50  Aligned_cols=83  Identities=14%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .+++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+.....          ...++.+...|..+.+..
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v   74 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNK----------HVQEPIVLPLDITDCTKA   74 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCT----------TSCCCEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcc----------ccCcceEEeccCCCHHHH
Confidence            468899999998764   33444566999999998 5555555554443310          113567778777765432


Q ss_pred             cc-------CCCCccEEEEccccc
Q 028673          139 KA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       139 ~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ..       .-++.|+++.+--+.
T Consensus        75 ~~~~~~~~~~~g~iD~lvnnAg~~   98 (250)
T 3nyw_A           75 DTEIKDIHQKYGAVDILVNAAAMF   98 (250)
T ss_dssp             HHHHHHHHHHHCCEEEEEECCCCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCcC
Confidence            11       124789988775543

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=85.51  E-value=2.3  Score=33.07  Aligned_cols=79  Identities=14%  Similarity=0.156  Sum_probs=50.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++||++|=-|++.|+   ++..+++.|++|+.+|. ++..+.++. +...+             .++.....|..+.++
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~-~~~~~-------------~~~~~~~~Dv~~~~~   69 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDA-LAQRQ-------------PRATYLPVELQDDAQ   69 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHH-HHHHC-------------TTCEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHH-HHhcC-------------CCEEEEEeecCCHHH
Confidence            5689999999999885   35566677999999998 544333332 22221             356777777776543


Q ss_pred             cc-------cCCCCccEEEEcccc
Q 028673          138 IK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~  154 (205)
                      ..       ..-++.|+++.+--+
T Consensus        70 v~~~v~~~~~~~G~iDiLVNnAGi   93 (258)
T 4gkb_A           70 CRDAVAQTIATFGRLDGLVNNAGV   93 (258)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            21       112578988876544

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=85.48  E-value=2.5  Score=33.93  Aligned_cols=93  Identities=22%  Similarity=0.218  Sum_probs=55.5

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-  137 (205)
                      ...|.+||-.|+|. |+..+.+++ .|++|+++|. ++-++.+++    .+.             . .+  .+..+.+. 
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa-------------~-~~--~d~~~~~~~  221 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGA-------------D-LV--VNPLKEDAA  221 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC-------------S-EE--ECTTTSCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCC-------------C-EE--ecCCCccHH
Confidence            34678999999974 777766665 4889999998 555554432    221             0 11  22222110 


Q ss_pred             --cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          138 --IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       138 --~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                        .......+|+|+-+      ......++...++++++|++++.
T Consensus       222 ~~~~~~~~~~d~vid~------~g~~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          222 KFMKEKVGGVHAAVVT------AVSKPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             HHHHHHHSSEEEEEES------SCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHhCCCCEEEEC------CCCHHHHHHHHHHhhcCCEEEEe
Confidence              00001368888765      12245667777888899987765

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=85.45  E-value=0.91  Score=34.92  Aligned_cols=78  Identities=22%  Similarity=0.322  Sum_probs=47.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+  .              .++.+...|..+.+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~--------------~~~~~~~~D~~~~~~   68 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI--G--------------PAAYAVQMDVTRQDS   68 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--C--------------TTEEEEECCTTCHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--C--------------CCceEEEeeCCCHHH
Confidence            4578899999987664   23344566999999998 44333332221  1              246677777766543


Q ss_pred             cc-------cCCCCccEEEEccccc
Q 028673          138 IK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      ..       ..-+++|+++.+--+.
T Consensus        69 v~~~~~~~~~~~g~id~lv~~Ag~~   93 (259)
T 4e6p_A           69 IDAAIAATVEHAGGLDILVNNAALF   93 (259)
T ss_dssp             HHHHHHHHHHHSSSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcC
Confidence            21       1124789998775543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=85.31  E-value=1.6  Score=33.46  Aligned_cols=79  Identities=18%  Similarity=0.105  Sum_probs=46.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+++++||=.|++.| +|..+    ++.|++|++++. ++.++.+...+...+             .++.+...|..+.+
T Consensus        11 ~l~~k~vlITGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~   76 (266)
T 1xq1_A           11 SLKAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG-------------FQVTGSVCDASLRP   76 (266)
T ss_dssp             CCTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHH
T ss_pred             CCCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeeEEEECCCCCHH
Confidence            356789998888655 34443    456999999998 544444444333321             24667776666543


Q ss_pred             CcccC--------CCCccEEEEcccc
Q 028673          137 HIKAV--------APPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~~~--------~~~fD~Ii~~d~~  154 (205)
                      .....        .+++|+++.+--+
T Consensus        77 ~~~~~~~~~~~~~~~~id~li~~Ag~  102 (266)
T 1xq1_A           77 EREKLMQTVSSMFGGKLDILINNLGA  102 (266)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCCcEEEECCCC
Confidence            22110        1578998876443

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=85.28  E-value=1.5  Score=33.55  Aligned_cols=77  Identities=16%  Similarity=0.148  Sum_probs=45.9

Q ss_pred             CCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cch--HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEV--LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        65 ~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~--l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++++|=.|++.|+   +...+++.|++|+++|. ++.  ++.+...+...             ..++.+...|..+.+..
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~v   68 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA-------------DQKAVFVGLDVTDKANF   68 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT-------------TCCEEEEECCTTCHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHH
Confidence            5788888987653   23344556999999998 544  44433333322             13567777777765432


Q ss_pred             cc-------CCCCccEEEEcccc
Q 028673          139 KA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       139 ~~-------~~~~fD~Ii~~d~~  154 (205)
                      ..       .-+++|+++.+--+
T Consensus        69 ~~~~~~~~~~~g~iD~lv~nAg~   91 (258)
T 3a28_C           69 DSAIDEAAEKLGGFDVLVNNAGI   91 (258)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence            11       12378998876544

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=85.17  E-value=1.7  Score=34.15  Aligned_cols=79  Identities=10%  Similarity=0.153  Sum_probs=44.3

Q ss_pred             CCCCCeEEEeCCCcc---HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCG---VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtG---l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+++++|=+|+..|   .+...+++.|++|+.++. ++-.+.+.+.+....              .+.+...|+.+.+.
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~--------------~~~~~~~D~~~~~~  181 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--------------KVNVTAAETADDAS  181 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--------------TCCCEEEECCSHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEecCCCHHH
Confidence            357889999994333   233445567999999998 443333333332211              13445566655433


Q ss_pred             cccCCCCccEEEEcccc
Q 028673          138 IKAVAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~  154 (205)
                      ....-..+|+|+.+-.+
T Consensus       182 ~~~~~~~~DvlVn~ag~  198 (287)
T 1lu9_A          182 RAEAVKGAHFVFTAGAI  198 (287)
T ss_dssp             HHHHTTTCSEEEECCCT
T ss_pred             HHHHHHhCCEEEECCCc
Confidence            32223457988877543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=85.04  E-value=1.3  Score=34.03  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=48.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEE-cC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++ +. ++..+.+...++..             ..++.+...|..+.+
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~   71 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL-------------GRSALAIKADLTNAA   71 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT-------------TSCCEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHH
Confidence            4578999999988764   334445669998888 54 44444444444332             235677787777654


Q ss_pred             Cccc-------CCCCccEEEEccc
Q 028673          137 HIKA-------VAPPFDYIIGTDV  153 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~  153 (205)
                      ....       .-++.|+++.+--
T Consensus        72 ~v~~~~~~~~~~~g~id~lv~nAg   95 (259)
T 3edm_A           72 EVEAAISAAADKFGEIHGLVHVAG   95 (259)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCC
Confidence            3211       1247898887653

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=84.98  E-value=1.2  Score=34.18  Aligned_cols=78  Identities=12%  Similarity=0.211  Sum_probs=46.5

Q ss_pred             CCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cch-HHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEV-LPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        64 ~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~-l~~~~~n~~~n-~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ++++||=.|++.|+   ++..+++.|++|+++|. ++. ++.+...+... +             .++.+...|..+.+.
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~   69 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG-------------VKVLYDGADLSKGEA   69 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT-------------SCEEEECCCTTSHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccC-------------CcEEEEECCCCCHHH
Confidence            57889989987663   23334456999999998 544 44444443322 1             246666767666543


Q ss_pred             ccc-------CCCCccEEEEcccc
Q 028673          138 IKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ...       .-+++|+++.+--+
T Consensus        70 v~~~~~~~~~~~g~iD~lv~~Ag~   93 (260)
T 1x1t_A           70 VRGLVDNAVRQMGRIDILVNNAGI   93 (260)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCC
Confidence            211       11478999876544

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=84.96  E-value=1.6  Score=33.98  Aligned_cols=81  Identities=25%  Similarity=0.278  Sum_probs=49.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcCc-----------------chHHHHHHHHHHhhhhhccCCCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-----------------EVLPLLKRNVEWNTSRISQMNPGSD  120 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~~-----------------~~l~~~~~n~~~n~~~~~~~~~~~~  120 (205)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|..                 +.++.+...+...            
T Consensus         7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------   74 (286)
T 3uve_A            7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH------------   74 (286)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT------------
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc------------
Confidence            35678999999998774   344455669999999863                 1222222222211            


Q ss_pred             CCCceEEEEeecCCCCCccc-------CCCCccEEEEcccc
Q 028673          121 LLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       121 ~~~~i~~~~~dw~~~~~~~~-------~~~~fD~Ii~~d~~  154 (205)
                       ..++.+...|..+.+....       .-++.|+++.+--+
T Consensus        75 -~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           75 -NRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             -TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             -CCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence             2467788877776543211       12478999877544

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=84.92  E-value=3.5  Score=32.53  Aligned_cols=45  Identities=20%  Similarity=0.342  Sum_probs=28.5

Q ss_pred             CCCCCeEEEeCCCc-c-HHHHHHHHhCC-EEEEEcC-cchHHHHHHHHH
Q 028673           62 KLKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQ-IEVLPLLKRNVE  106 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-G-l~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~  106 (205)
                      ..++++||=+|+|- | .+...++..|+ +|+.++. ++-.+.+.+.+.
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~  172 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVIN  172 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            56789999999972 2 22334556688 6999988 554443333333

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=84.86  E-value=1.9  Score=33.87  Aligned_cols=62  Identities=16%  Similarity=0.079  Sum_probs=38.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEc-C-cchHHHHHHHHH-HhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTD-Q-IEVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D-~-~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++| . ++.++.+...+. ..+             .++.+...|..+.
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~-------------~~~~~~~~Dl~~~   72 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-------------NSAITVQADLSNV   72 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-------------TCEEEEECCCSSS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcC-------------CeeEEEEeecCCc
Confidence            3468899999987664   2333445699999999 7 554554444443 221             3567777777765


Q ss_pred             C
Q 028673          136 D  136 (205)
Q Consensus       136 ~  136 (205)
                      +
T Consensus        73 ~   73 (291)
T 1e7w_A           73 A   73 (291)
T ss_dssp             C
T ss_pred             c
Confidence            5

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=84.78  E-value=1.1  Score=34.97  Aligned_cols=79  Identities=15%  Similarity=0.129  Sum_probs=48.3

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      -.++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...   .             ..++.+...|..+.+
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~-------------~~~~~~~~~Dv~d~~   86 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE---I-------------GSKAFGVRVDVSSAK   86 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---H-------------CTTEEEEECCTTCHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---h-------------CCceEEEEecCCCHH
Confidence            35678999999987764   33344566999999998 5433333222   1             124677777776654


Q ss_pred             Cccc-------CCCCccEEEEccccc
Q 028673          137 HIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ....       .-+++|+++.+--+.
T Consensus        87 ~v~~~~~~~~~~~g~iD~lv~nAg~~  112 (277)
T 4dqx_A           87 DAESMVEKTTAKWGRVDVLVNNAGFG  112 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            3211       124789888775443

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=84.75  E-value=2  Score=33.87  Aligned_cols=81  Identities=25%  Similarity=0.276  Sum_probs=49.4

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcCc-------------chHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (205)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|..             +.++.+...++..             ..+
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~   90 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL-------------GRR   90 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT-------------TCC
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc-------------CCc
Confidence            35678999999998774   344455679999999863             1222222222222             246


Q ss_pred             eEEEEeecCCCCCccc-------CCCCccEEEEcccc
Q 028673          125 IQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       125 i~~~~~dw~~~~~~~~-------~~~~fD~Ii~~d~~  154 (205)
                      +.+...|..+.+....       .-++.|++|.+--+
T Consensus        91 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A           91 IIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             eEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            7788877776543211       12478998876544

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=84.65  E-value=1.5  Score=34.15  Aligned_cols=82  Identities=22%  Similarity=0.217  Sum_probs=49.7

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC--------------cchHHHHHHHHHHhhhhhccCCCCCCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--------------IEVLPLLKRNVEWNTSRISQMNPGSDLLG  123 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~--------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  123 (205)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|.              ++.++.+...+...             ..
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~   77 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ-------------GR   77 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT-------------TC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc-------------CC
Confidence            45688999999998764   33444566999999986              12233333322222             23


Q ss_pred             ceEEEEeecCCCCCccc-------CCCCccEEEEccccc
Q 028673          124 SIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       124 ~i~~~~~dw~~~~~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ++.+...|..+.+....       .-++.|+++.+--+.
T Consensus        78 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~  116 (280)
T 3pgx_A           78 KALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVL  116 (280)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            57777877776543211       124789998775544

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=84.63  E-value=1.9  Score=33.50  Aligned_cols=82  Identities=16%  Similarity=0.185  Sum_probs=49.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcCc-c------------hHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E------------VLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~~-~------------~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (205)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|.. .            .++.....+...             ..+
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~   72 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT-------------GRR   72 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT-------------TCC
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc-------------CCe
Confidence            35678999999987764   233445669999999872 1            222222222222             235


Q ss_pred             eEEEEeecCCCCCccc-------CCCCccEEEEccccc
Q 028673          125 IQAVELDWGNEDHIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       125 i~~~~~dw~~~~~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      +.+...|..+.+....       .-++.|+++.+--+.
T Consensus        73 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  110 (281)
T 3s55_A           73 CISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGIS  110 (281)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            7777877776543211       124789988775543

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=84.62  E-value=1.2  Score=35.26  Aligned_cols=83  Identities=17%  Similarity=0.209  Sum_probs=52.2

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..+++++||=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+            ..++.+...|..+.+
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~d~~  104 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG------------AGNVIGVRLDVSDPG  104 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS------------SSCEEEEECCTTCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC------------CCcEEEEEEeCCCHH
Confidence            35678999999987664   33344566999999998 555555544443221            135777887777654


Q ss_pred             Ccc-------cCCCCccEEEEccccc
Q 028673          137 HIK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      ...       ..-+++|+++.+--+.
T Consensus       105 ~v~~~~~~~~~~~g~iD~lvnnAg~~  130 (293)
T 3rih_A          105 SCADAARTVVDAFGALDVVCANAGIF  130 (293)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            321       1124789998775443

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=84.48  E-value=1.6  Score=33.35  Aligned_cols=77  Identities=23%  Similarity=0.290  Sum_probs=45.6

Q ss_pred             CCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        65 ~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++++|=.|++.|+   +...+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+....
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~v~~   68 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-------------GHAVAVKVDVSDRDQVFA   68 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEecCCCHHHHHH
Confidence            4678888876553   23334456999999998 554444444333221             246777777766543211


Q ss_pred             -------CCCCccEEEEcccc
Q 028673          141 -------VAPPFDYIIGTDVV  154 (205)
Q Consensus       141 -------~~~~fD~Ii~~d~~  154 (205)
                             .-+++|+++.+--+
T Consensus        69 ~~~~~~~~~g~id~lv~nAg~   89 (256)
T 1geg_A           69 AVEQARKTLGGFDVIVNNAGV   89 (256)
T ss_dssp             HHHHHHHHTTCCCEEEECCCC
T ss_pred             HHHHHHHHhCCCCEEEECCCC
Confidence                   12478999876543

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=84.39  E-value=1.5  Score=34.22  Aligned_cols=81  Identities=20%  Similarity=0.223  Sum_probs=50.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cc-------hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-------VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL  130 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~-------~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~  130 (205)
                      .++++++|=-|++.|+   ++..+++.|++|++++. ++       .++.+...+...+             .++.+...
T Consensus         6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~   72 (285)
T 3sc4_A            6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG-------------GQALPIVG   72 (285)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT-------------SEEEEEEC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC-------------CcEEEEEC
Confidence            3578899999998774   23344456999999987 43       2444444444332             35777787


Q ss_pred             ecCCCCCccc-------CCCCccEEEEccccc
Q 028673          131 DWGNEDHIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       131 dw~~~~~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      |..+.+....       .-++.|+++.+--+.
T Consensus        73 Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~  104 (285)
T 3sc4_A           73 DIRDGDAVAAAVAKTVEQFGGIDICVNNASAI  104 (285)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            7776543211       124789988775443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=84.28  E-value=3.7  Score=28.61  Aligned_cols=95  Identities=11%  Similarity=0.066  Sum_probs=50.1

Q ss_pred             CCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cc-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           65 GKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      .++|+=+|+|  ..|..++    ..|.+|+++|. ++ .++.+.....                ..+.+...|..+.+.+
T Consensus         3 ~~~vlI~G~G--~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~----------------~~~~~i~gd~~~~~~l   64 (153)
T 1id1_A            3 KDHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----------------DNADVIPGDSNDSSVL   64 (153)
T ss_dssp             CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----------------TTCEEEESCTTSHHHH
T ss_pred             CCcEEEECCC--HHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc----------------CCCeEEEcCCCCHHHH
Confidence            4578888875  4444443    45888999998 43 3333332111                1246666554443322


Q ss_pred             cc-CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          139 KA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       139 ~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .. .-...|+|+++   -..+.....+....+.+.|...++.-
T Consensus        65 ~~a~i~~ad~vi~~---~~~d~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           65 KKAGIDRCRAILAL---SDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHHTTTTCSEEEEC---SSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             HHcChhhCCEEEEe---cCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            21 23578988886   22223334444445556666665543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=84.21  E-value=1.1  Score=34.31  Aligned_cols=78  Identities=22%  Similarity=0.259  Sum_probs=48.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .+++++||=.|++.|+   ++..+++.|++|+++|. ++.++.+...+  .              .++.+...|..+.+.
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~--------------~~~~~~~~D~~~~~~   69 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI--G--------------DAALAVAADISKEAD   69 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--C--------------TTEEEEECCTTSHHH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--C--------------CceEEEEecCCCHHH
Confidence            4578899999998764   34444566999999998 55444333321  1              246777777766543


Q ss_pred             ccc-------CCCCccEEEEccccc
Q 028673          138 IKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ...       ..+++|+++.+--+.
T Consensus        70 ~~~~~~~~~~~~g~id~li~~Ag~~   94 (261)
T 3n74_A           70 VDAAVEAALSKFGKVDILVNNAGIG   94 (261)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccC
Confidence            211       124789988775443

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=84.20  E-value=1  Score=34.97  Aligned_cols=78  Identities=22%  Similarity=0.169  Sum_probs=48.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+  .              .++.+...|..+.+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~--------------~~~~~~~~Dv~~~~~   71 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV--G--------------RGAVHHVVDLTNEVS   71 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH--C--------------TTCEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--C--------------CCeEEEECCCCCHHH
Confidence            4578999999987764   33445566999999998 55444443322  1              245667777666543


Q ss_pred             ccc-------CCCCccEEEEccccc
Q 028673          138 IKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ...       .-++.|+++.+--+.
T Consensus        72 v~~~~~~~~~~~g~id~lv~nAg~~   96 (271)
T 3tzq_B           72 VRALIDFTIDTFGRLDIVDNNAAHS   96 (271)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            211       124789998775544

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=84.10  E-value=1.2  Score=34.31  Aligned_cols=77  Identities=19%  Similarity=0.191  Sum_probs=45.2

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      +++++||=.|++.|+   +...+++.|++|+++|. ++..+.+...+.                ..+.+...|..+.+..
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~D~~~~~~v   68 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA----------------DAARYVHLDVTQPAQW   68 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG----------------GGEEEEECCTTCHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh----------------cCceEEEecCCCHHHH
Confidence            468899999987654   23334456999999998 543333322211                1356667676655432


Q ss_pred             ccC-------CCCccEEEEccccc
Q 028673          139 KAV-------APPFDYIIGTDVVY  155 (205)
Q Consensus       139 ~~~-------~~~fD~Ii~~d~~y  155 (205)
                      ...       -+++|+++.+--+.
T Consensus        69 ~~~~~~~~~~~g~iD~lv~~Ag~~   92 (260)
T 1nff_A           69 KAAVDTAVTAFGGLHVLVNNAGIL   92 (260)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCC
Confidence            111       13789998775443

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=84.10  E-value=10  Score=29.65  Aligned_cols=81  Identities=17%  Similarity=0.101  Sum_probs=47.2

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEE-EeecCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-ELDWGN  134 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~-~~dw~~  134 (205)
                      ...++++||=.|+ +|.+|..++    +.|.+|++++. ++..+.+...+....            ..++.+. ..|..+
T Consensus         7 ~~~~~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~d   73 (342)
T 1y1p_A            7 VLPEGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY------------PGRFETAVVEDMLK   73 (342)
T ss_dssp             SSCTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS------------TTTEEEEECSCTTS
T ss_pred             cCCCCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC------------CCceEEEEecCCcC
Confidence            3456789998886 355555554    45889999988 443333332222110            1246666 667766


Q ss_pred             CCCcccCCCCccEEEEcccc
Q 028673          135 EDHIKAVAPPFDYIIGTDVV  154 (205)
Q Consensus       135 ~~~~~~~~~~fD~Ii~~d~~  154 (205)
                      .+.....-..+|+|+-+-..
T Consensus        74 ~~~~~~~~~~~d~vih~A~~   93 (342)
T 1y1p_A           74 QGAYDEVIKGAAGVAHIASV   93 (342)
T ss_dssp             TTTTTTTTTTCSEEEECCCC
T ss_pred             hHHHHHHHcCCCEEEEeCCC
Confidence            65444333478999865433

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=84.06  E-value=0.88  Score=34.92  Aligned_cols=77  Identities=18%  Similarity=0.091  Sum_probs=43.3

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++++++|=-|++.|+   ++..+++.|++|+++|. ++..+.+...+                ..++.+...|..+.+..
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~Dv~~~~~v   68 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL----------------GAAVRFRNADVTNEADA   68 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC----------------------------CEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----------------CCceEEEEccCCCHHHH
Confidence            478899999998764   23344566999999998 55443333222                12466777777665432


Q ss_pred             cc-------CCCCccEEEEccccc
Q 028673          139 KA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       139 ~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ..       .-++.|+++.+--+.
T Consensus        69 ~~~~~~~~~~~g~id~lv~nAg~~   92 (257)
T 3tpc_A           69 TAALAFAKQEFGHVHGLVNCAGTA   92 (257)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCC
Confidence            11       124789888765443

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=83.99  E-value=2.9  Score=31.58  Aligned_cols=78  Identities=23%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+++++||=.|++.|+ |..+    ++.|++|++++. ++.++.+...+..              ..++.+...|..+.+
T Consensus         3 ~~~~k~vlVtGasggi-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~   67 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGI-GLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--------------PDQIQFFQHDSSDED   67 (251)
T ss_dssp             TTTTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--------------TTTEEEEECCTTCHH
T ss_pred             CCCCcEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc--------------cCceEEEECCCCCHH
Confidence            3467889999886553 4443    456999999998 4433333222211              135777777776654


Q ss_pred             Cccc-------CCCCccEEEEcccc
Q 028673          137 HIKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ....       .-+++|+++.+--+
T Consensus        68 ~~~~~~~~~~~~~~~id~li~~Ag~   92 (251)
T 1zk4_A           68 GWTKLFDATEKAFGPVSTLVNNAGI   92 (251)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCC
Confidence            2211       11368998876543

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=83.95  E-value=1.7  Score=33.67  Aligned_cols=81  Identities=17%  Similarity=0.199  Sum_probs=50.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-c-chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+++++||=-|++.|+   ++..+++.|++|++++. + +..+.+...+...+             .++.+...|..+.+
T Consensus        25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~d~~   91 (269)
T 4dmm_A           25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG-------------GEAFAVKADVSQES   91 (269)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC-------------CcEEEEECCCCCHH
Confidence            4578899999987764   33444567999998887 4 34444444443332             35777787777654


Q ss_pred             Cccc-------CCCCccEEEEccccc
Q 028673          137 HIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      ....       .-++.|+++.+--+.
T Consensus        92 ~v~~~~~~~~~~~g~id~lv~nAg~~  117 (269)
T 4dmm_A           92 EVEALFAAVIERWGRLDVLVNNAGIT  117 (269)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            3211       124789998775443

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=83.68  E-value=1.5  Score=35.94  Aligned_cols=94  Identities=23%  Similarity=0.134  Sum_probs=56.1

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecC---C
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG---N  134 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~---~  134 (205)
                      ..+|.+||-+|+|. |+..+.+|+. | ++|+++|. ++-++.+++    .+.              -.+.  +..   +
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa--------------~~vi--~~~~~~~  252 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGA--------------DLTL--NRRETSV  252 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTC--------------SEEE--ETTTSCH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCC--------------cEEE--eccccCc
Confidence            34688999999874 8777777764 8 48999998 555555442    221              0111  111   0


Q ss_pred             CC---Ccc-c-CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          135 ED---HIK-A-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       135 ~~---~~~-~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .+   ... . ....+|+|+-+  .    .....++...++++++|++++.-
T Consensus       253 ~~~~~~v~~~~~g~g~Dvvid~--~----g~~~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          253 EERRKAIMDITHGRGADFILEA--T----GDSRALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             HHHHHHHHHHTTTSCEEEEEEC--S----SCTTHHHHHHHHEEEEEEEEECC
T ss_pred             chHHHHHHHHhCCCCCcEEEEC--C----CCHHHHHHHHHHHhcCCEEEEEe
Confidence            00   000 0 12368988865  1    12345677778889999877654

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=83.54  E-value=1.1  Score=34.32  Aligned_cols=76  Identities=22%  Similarity=0.215  Sum_probs=45.1

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      +++++||=.|++.|+   +...+++.|++|+++|. ++.++.+...+   +             .++.+...|..+.+..
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~D~~~~~~~   66 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---G-------------DAARYQHLDVTIEEDW   66 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---G-------------GGEEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-------------CceeEEEecCCCHHHH
Confidence            467899999987653   23344456999999998 44333222211   1             2466677776655432


Q ss_pred             cc-------CCCCccEEEEcccc
Q 028673          139 KA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       139 ~~-------~~~~fD~Ii~~d~~  154 (205)
                      ..       .-+++|+++.+--+
T Consensus        67 ~~~~~~~~~~~g~iD~lv~nAg~   89 (254)
T 1hdc_A           67 QRVVAYAREEFGSVDGLVNNAGI   89 (254)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            11       11378998876544

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=83.52  E-value=1.2  Score=34.58  Aligned_cols=82  Identities=16%  Similarity=0.124  Sum_probs=47.1

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      +++++||=.|++.|+   +...+++.|++|++++. ++.++.+...+....          ....++.+...|..+.+..
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~~~~~~~D~~~~~~~   73 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG----------VSEQNVNSVVADVTTDAGQ   73 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----------CCGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc----------cCCCceeEEecccCCHHHH
Confidence            467889999987653   23334456999999998 554444444332111          0123567777777665432


Q ss_pred             cc-------CCCCccEEEEcccc
Q 028673          139 KA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       139 ~~-------~~~~fD~Ii~~d~~  154 (205)
                      ..       .-+++|+++.+--+
T Consensus        74 ~~~~~~~~~~~g~id~lv~~Ag~   96 (278)
T 1spx_A           74 DEILSTTLGKFGKLDILVNNAGA   96 (278)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC-
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            11       11378988876433

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=83.48  E-value=5.4  Score=31.17  Aligned_cols=81  Identities=20%  Similarity=0.276  Sum_probs=51.1

Q ss_pred             CCCCeEEEeCCCccHH---HHHHHHhCC---EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           63 LKGKRVIELGAGCGVA---GFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~---sl~~a~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ++++++|=-|++.|+-   +..+++.|+   +|++++. ++.++.+...+....           ...++.+...|..+.
T Consensus        31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dv~d~   99 (287)
T 3rku_A           31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEF-----------PNAKVHVAQLDITQA   99 (287)
T ss_dssp             HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHC-----------TTCEEEEEECCTTCG
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhC-----------CCCeEEEEECCCCCH
Confidence            3688999999877642   223344576   8999998 566665555554431           123577788887776


Q ss_pred             CCcc-------cCCCCccEEEEcccc
Q 028673          136 DHIK-------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       136 ~~~~-------~~~~~fD~Ii~~d~~  154 (205)
                      +...       ..-++.|+++.+--+
T Consensus       100 ~~v~~~~~~~~~~~g~iD~lVnnAG~  125 (287)
T 3rku_A          100 EKIKPFIENLPQEFKDIDILVNNAGK  125 (287)
T ss_dssp             GGHHHHHHTSCGGGCSCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            5321       112478999877544

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=83.47  E-value=2.1  Score=33.21  Aligned_cols=81  Identities=22%  Similarity=0.264  Sum_probs=50.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cch-------HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEV-------LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL  130 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~-------l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~  130 (205)
                      .++++++|=-|++.|+   ++..+++.|++|++++. ++.       ++.....+...+             .++.+...
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~   69 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAG-------------GQGLALKC   69 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHT-------------SEEEEEEC
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcC-------------CeEEEEeC
Confidence            3578999999998764   23445566999999987 431       344444333332             35777887


Q ss_pred             ecCCCCCccc-------CCCCccEEEEccccc
Q 028673          131 DWGNEDHIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       131 dw~~~~~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      |..+.+....       .-++.|+++.+--+.
T Consensus        70 Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~  101 (274)
T 3e03_A           70 DIREEDQVRAAVAATVDTFGGIDILVNNASAI  101 (274)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence            7776543211       124789988775443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=83.43  E-value=8  Score=25.90  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             CCeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHH
Q 028673           65 GKRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLP   99 (205)
Q Consensus        65 ~~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~   99 (205)
                      +.+|+=+|+|. | .++..+++.|.+|+++|. ++.++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~   41 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICK   41 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence            45788888863 3 222333455889999998 55443

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=83.39  E-value=1.8  Score=34.52  Aligned_cols=82  Identities=23%  Similarity=0.208  Sum_probs=49.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcCc-------------chHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (205)
                      ..+++++||=-|++.|+   ++..+++.|++|+++|..             +.++.+...+...             ..+
T Consensus        42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~  108 (317)
T 3oec_A           42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ-------------GRR  108 (317)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT-------------TCC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc-------------CCe
Confidence            35678999999998764   334445669999998762             1222222222222             235


Q ss_pred             eEEEEeecCCCCCccc-------CCCCccEEEEccccc
Q 028673          125 IQAVELDWGNEDHIKA-------VAPPFDYIIGTDVVY  155 (205)
Q Consensus       125 i~~~~~dw~~~~~~~~-------~~~~fD~Ii~~d~~y  155 (205)
                      +.+...|..+.+....       .-+++|++|.+--+.
T Consensus       109 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~  146 (317)
T 3oec_A          109 IIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGIS  146 (317)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            7777877776543211       124789998775443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=83.33  E-value=4.4  Score=32.09  Aligned_cols=97  Identities=16%  Similarity=0.094  Sum_probs=53.7

Q ss_pred             CeEEEeCCCc--cHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        66 ~~VLdlGcGt--Gl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      .+|+=+|+|.  +.++..+++.|.+|++.+.++ .+.    ++.++......      .....+........  .. ...
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~----i~~~g~~~~~~------~g~~~~~~~~~~~~--~~-~~~   68 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD-YEA----IAGNGLKVFSI------NGDFTLPHVKGYRA--PE-EIG   68 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT-HHH----HHHTCEEEEET------TCCEEESCCCEESC--HH-HHC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc-HHH----HHhCCCEEEcC------CCeEEEeeceeecC--HH-HcC
Confidence            4688899996  466777778888999999854 222    33343211000      00111100000000  11 124


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      .+|+|+.+=.-+   ..+.+++.+...++++..++.
T Consensus        69 ~~D~vilavk~~---~~~~~l~~l~~~l~~~~~iv~  101 (312)
T 3hn2_A           69 PMDLVLVGLKTF---ANSRYEELIRPLVEEGTQILT  101 (312)
T ss_dssp             CCSEEEECCCGG---GGGGHHHHHGGGCCTTCEEEE
T ss_pred             CCCEEEEecCCC---CcHHHHHHHHhhcCCCCEEEE
Confidence            789998874334   456788888888888775543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=83.06  E-value=0.75  Score=37.09  Aligned_cols=45  Identities=13%  Similarity=0.045  Sum_probs=32.4

Q ss_pred             CCCccEEEEcccccCC-------c----ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          142 APPFDYIIGTDVVYAE-------H----LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~-------~----~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      .++||+|+..+++...       .    .....+..+.++|+|+|.+++....+..
T Consensus        56 ~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~  111 (319)
T 1eg2_A           56 DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQ  111 (319)
T ss_dssp             TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCC
T ss_pred             cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcccc
Confidence            4589999996665432       1    2446677778899999999998765543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=83.06  E-value=5.8  Score=30.15  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=23.5

Q ss_pred             CCCCCeEEEeCCCc-cHH-HHHHHHhCCEEEEEcC
Q 028673           62 KLKGKRVIELGAGC-GVA-GFGMALLGCNVITTDQ   94 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~-sl~~a~~g~~v~~~D~   94 (205)
                      ++++++||=+|+|. |.- .-.+.+.|++|+.++-
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap   62 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAP   62 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence            56899999999984 322 2234456999888875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=83.04  E-value=4.3  Score=32.55  Aligned_cols=94  Identities=19%  Similarity=0.262  Sum_probs=54.8

Q ss_pred             CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGc-G-tGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ...|++||=.|+ | .|...+.+++ .|++|++++. ++-++.+++    .+.              -.+...+ .+..+
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga--------------~~v~~~~-~~~~~  217 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS----VGA--------------DIVLPLE-EGWAK  217 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTC--------------SEEEESS-TTHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCC--------------cEEecCc-hhHHH
Confidence            446889999998 4 4777777775 4899999998 665665553    221              1122211 11100


Q ss_pred             -cc--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 -IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 -~~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                       ..  .....+|+|+-+--  .     ..+....++++++|++++.-
T Consensus       218 ~v~~~~~~~g~Dvvid~~g--~-----~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          218 AVREATGGAGVDMVVDPIG--G-----PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             HHHHHTTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred             HHHHHhCCCCceEEEECCc--h-----hHHHHHHHhhcCCCEEEEEE
Confidence             00  11236898886521  1     24566667888888877653

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=82.94  E-value=1.6  Score=36.39  Aligned_cols=42  Identities=12%  Similarity=-0.058  Sum_probs=33.3

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC--C-E----EEEEcC-cchHHHHHHHHH
Q 028673           65 GKRVIELGAGCGVAGFGMALLG--C-N----VITTDQ-IEVLPLLKRNVE  106 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g--~-~----v~~~D~-~~~l~~~~~n~~  106 (205)
                      ..+|+||.||.|-.++.+.+.|  . -    |.++|+ +.+++..+.|..
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            3589999999999888888877  2 2    778999 667777777764

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=82.93  E-value=1.4  Score=33.76  Aligned_cols=76  Identities=13%  Similarity=0.152  Sum_probs=46.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+++++||=.|++.|+ |..+    ++.|++|++++. ++.++.+.+.+  .              .++.+...|..+.+
T Consensus         9 ~~~~k~vlVTGasggi-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~--------------~~~~~~~~D~~~~~   71 (265)
T 2o23_A            9 SVKGLVAVITGGASGL-GLATAERLVGQGASAVLLDLPNSGGEAQAKKL--G--------------NNCVFAPADVTSEK   71 (265)
T ss_dssp             CCTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH--C--------------TTEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCChH-HHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh--C--------------CceEEEEcCCCCHH
Confidence            3578899999986553 4444    455899999998 54444333222  1              24677777776654


Q ss_pred             Cccc-------CCCCccEEEEcccc
Q 028673          137 HIKA-------VAPPFDYIIGTDVV  154 (205)
Q Consensus       137 ~~~~-------~~~~fD~Ii~~d~~  154 (205)
                      ....       .-+++|+++.+--+
T Consensus        72 ~v~~~~~~~~~~~g~id~li~~Ag~   96 (265)
T 2o23_A           72 DVQTALALAKGKFGRVDVAVNCAGI   96 (265)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCcc
Confidence            3211       11378998876443

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=82.84  E-value=3.8  Score=36.99  Aligned_cols=103  Identities=17%  Similarity=0.244  Sum_probs=61.1

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhh---ccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI---SQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~---~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++|-=||+|+ | -++..++..|..|+..|. ++.++.++..+..+-...   ...........++....    +.+.  
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~--  390 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS----STKE--  390 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEES----CGGG--
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccC----cHHH--
Confidence            5899999997 3 445667788999999999 778777776665432110   00000001112222211    1111  


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEE
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI  177 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~  177 (205)
                        -...|+||=+ ++...+.-..+++.+...++|+.++
T Consensus       391 --l~~aDlVIEA-V~E~l~iK~~vf~~le~~~~~~aIl  425 (742)
T 3zwc_A          391 --LSTVDLVVEA-VFEDMNLKKKVFAELSALCKPGAFL  425 (742)
T ss_dssp             --GGSCSEEEEC-CCSCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             --HhhCCEEEEe-ccccHHHHHHHHHHHhhcCCCCceE
Confidence              2357888865 3444555568999999999888653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=82.70  E-value=3.3  Score=32.52  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHH
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLK  102 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~  102 (205)
                      .++||++|==|++.|+   ++..+++.|++|+++|. ++.++.+.
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~   70 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAI   70 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4689999999998874   35555667999999999 66555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.87
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.82
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.81
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.8
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.77
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.76
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.75
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.72
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.71
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.71
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.69
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.69
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.68
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.67
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.66
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.66
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.65
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.64
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.64
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.64
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.64
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.62
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.62
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.61
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.61
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.6
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.6
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.59
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.58
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.58
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.57
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.57
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.56
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.54
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.54
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.54
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.54
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.54
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.52
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.52
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.51
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.51
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.5
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.5
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.5
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.48
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.48
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.47
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.46
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.46
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.46
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.45
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.44
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.42
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.42
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.42
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.42
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.4
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.39
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.37
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.36
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.3
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.28
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.26
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.18
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.17
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.11
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.1
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.03
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.0
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.87
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.81
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.78
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.75
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.67
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.63
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.63
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.6
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.56
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.56
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.5
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.45
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.44
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.44
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.43
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.18
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.16
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.12
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.09
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.02
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.99
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.96
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.84
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.81
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.8
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.73
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.73
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.72
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.59
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.55
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.27
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.23
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.19
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.98
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.81
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.65
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.6
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.56
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.54
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.52
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.47
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.45
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.41
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.28
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.23
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.19
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.19
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.14
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.08
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.08
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.81
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	95.49
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.28
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.2
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.98
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.96
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.94
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.87
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.44
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.41
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.33
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.29
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	94.26
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.23
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.16
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.07
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.86
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.77
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	93.71
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.64
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.5
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	93.46
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.24
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.22
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.2
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.19
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.09
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.05
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.04
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.01
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	92.94
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.79
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.6
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.57
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.5
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.39
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.38
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	92.25
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.19
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.06
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.97
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.89
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.56
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	91.51
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.5
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.45
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.27
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.2
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	90.96
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.91
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.83
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	90.76
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	90.55
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.35
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.07
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.02
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.92
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	89.83
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.73
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	89.72
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	89.53
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.53
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.42
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	87.84
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.17
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.77
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.55
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	86.35
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	86.22
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	85.38
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	85.02
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	84.65
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	84.49
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	84.35
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	84.14
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	83.83
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.38
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	83.19
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	83.14
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	82.87
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	82.03

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.87  E-value=3.4e-21  Score=145.89  Aligned_cols=160  Identities=19%  Similarity=0.219  Sum_probs=123.2

Q ss_pred             CCCCCCCCCccEEEEEEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHH
Q 028673            2 EADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFG   81 (205)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~   81 (205)
                      .|.+....+...++..+.|.++++.+.++.+..+ .++.++.+|++++..           .++++|||+|||+|.+++.
T Consensus         2 ~~~p~~~~~~~~~~~~~~g~~~~~~t~~gvF~~~-~~d~~t~lLi~~l~~-----------~~~~~VLDiGcG~G~~~~~   69 (194)
T d1dusa_           2 SEKPTTKSDVKIVEDILRGKKLKFKTDSGVFSYG-KVDKGTKILVENVVV-----------DKDDDILDLGCGYGVIGIA   69 (194)
T ss_dssp             CCCCCSCCCEEEEEEEETTEEEEEEEETTSTTTT-SCCHHHHHHHHHCCC-----------CTTCEEEEETCTTSHHHHH
T ss_pred             CCCCCCccceEEEEEEECCeeEEEEcCCCccCCC-CcCHHHHHHHHhCCc-----------CCCCeEEEEeecCChhHHH
Confidence            3445555555677777899999998888655444 345667777776633           3688999999999999999


Q ss_pred             HHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC-
Q 028673           82 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-  159 (205)
Q Consensus        82 ~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~-  159 (205)
                      +++.+.+|+++|+ +.+++.+++|++.|+..          ..++++...|+.+.    ..+.+||+|++++++|.... 
T Consensus        70 la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~----------~~~i~~~~~d~~~~----~~~~~fD~Ii~~~p~~~~~~~  135 (194)
T d1dusa_          70 LADEVKSTTMADINRRAIKLAKENIKLNNLD----------NYDIRVVHSDLYEN----VKDRKYNKIITNPPIRAGKEV  135 (194)
T ss_dssp             HGGGSSEEEEEESCHHHHHHHHHHHHHTTCT----------TSCEEEEECSTTTT----CTTSCEEEEEECCCSTTCHHH
T ss_pred             HHhhccccceeeeccccchhHHHHHHHhCCc----------cceEEEEEcchhhh----hccCCceEEEEcccEEecchh
Confidence            9999999999999 78999999999998652          23577777665442    13568999999998876544 


Q ss_pred             hHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          160 LEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       160 ~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      .+.+++.+.++|+|||.+++........
T Consensus       136 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~  163 (194)
T d1dusa_         136 LHRIIEEGKELLKDNGEIWVVIQTKQGA  163 (194)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEESTHHH
T ss_pred             hhhHHHHHHHhcCcCcEEEEEEeCcCCH
Confidence            5789999999999999999877655443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=4.5e-20  Score=144.98  Aligned_cols=135  Identities=21%  Similarity=0.267  Sum_probs=102.7

Q ss_pred             EEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHH
Q 028673           22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPL  100 (205)
Q Consensus        22 ~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~  100 (205)
                      .+.|.-+|+ -.+|+-..+.+.++.+++...         ..+|++|||+|||+|.+++.+++.|++|+++|+ +.+++.
T Consensus        88 ~~~i~i~pg-~aFGTG~H~TT~l~l~~l~~~---------~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~  157 (254)
T d2nxca1          88 EIPLVIEPG-MAFGTGHHETTRLALKALARH---------LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQ  157 (254)
T ss_dssp             SEEEECCCC------CCSHHHHHHHHHHHHH---------CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHH
T ss_pred             ceEEEEccc-cccCccccchhhHHHHHHHhh---------cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHH
Confidence            455555663 334444458899999999875         457899999999999999999999999999999 889999


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       101 ~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      +++|++.|+.             ++.+...++.+.    ...++||+|+++   ...+.+..+++.+.++|+|||+++++
T Consensus       158 A~~na~~n~~-------------~~~~~~~d~~~~----~~~~~fD~V~an---i~~~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         158 AEANAKRNGV-------------RPRFLEGSLEAA----LPFGPFDLLVAN---LYAELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             HHHHHHHTTC-------------CCEEEESCHHHH----GGGCCEEEEEEE---CCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHcCC-------------ceeEEecccccc----ccccccchhhhc---cccccHHHHHHHHHHhcCCCcEEEEE
Confidence            9999999965             345555444321    224689999997   33456778899999999999999998


Q ss_pred             Eeeccc
Q 028673          181 FSLSMF  186 (205)
Q Consensus       181 ~~~r~~  186 (205)
                      .-.+..
T Consensus       218 gil~~~  223 (254)
T d2nxca1         218 GILKDR  223 (254)
T ss_dssp             EEEGGG
T ss_pred             ecchhh
Confidence            665544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=2.9e-19  Score=138.56  Aligned_cols=109  Identities=12%  Similarity=0.079  Sum_probs=94.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..+|.+|||||||||..+..+++++++|+++|+ ++|++.|++++..++.            +++.+...|..+.   +.
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~------------~~~~~~~~d~~~~---~~   78 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV------------ENVRFQQGTAESL---PF   78 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC------------CSEEEEECBTTBC---CS
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc------------ccccccccccccc---cc
Confidence            447889999999999999999999999999999 7899999999988754            4688888666543   33


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .+++||+|+++.++++..+.+.+++.+.++|+|||.++++...+.
T Consensus        79 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~  123 (234)
T d1xxla_          79 PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP  123 (234)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence            467999999999999999999999999999999999999865443

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.80  E-value=7e-19  Score=135.64  Aligned_cols=108  Identities=12%  Similarity=0.094  Sum_probs=93.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||||||+|..+..+++.|++|+++|+ +++++.++++++.++.            +++.+...++.+..   .
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~------------~~i~~~~~d~~~l~---~   77 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH------------QQVEYVQGDAEQMP---F   77 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCC-CCC---S
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccc------------cccccccccccccc---c
Confidence            346789999999999999999999999999999 7899999999988753            57888887766543   3


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .+++||+|++..++++..+.+.+++.+.++|+|||.+++.....
T Consensus        78 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          78 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            46799999999999999999999999999999999999986544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.9e-18  Score=134.85  Aligned_cols=123  Identities=14%  Similarity=0.007  Sum_probs=102.0

Q ss_pred             cccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCC
Q 028673           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (205)
Q Consensus        39 W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (205)
                      ++.+.-..+.+...       ....+|++|||+|||+|..+..+++. |++|+++|+ +.+++.++++++.++.      
T Consensus        15 ~p~~~~~~~~l~~~-------~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl------   81 (245)
T d1nkva_          15 NPFTEEKYATLGRV-------LRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV------   81 (245)
T ss_dssp             SSCCHHHHHHHHHH-------TCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC------
T ss_pred             CCCCHHHHHHHHHH-------cCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhc------
Confidence            44455555556554       34557899999999999999988875 789999999 7899999999988864      


Q ss_pred             CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                           .+++++...|+.+..    .+++||+|++..++++..+.+.+++.+++.|+|||++++..+.
T Consensus        82 -----~~~v~~~~~d~~~~~----~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_          82 -----SERVHFIHNDAAGYV----ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             -----TTTEEEEESCCTTCC----CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             -----cccchhhhhHHhhcc----ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence                 457899987776542    3568999999999999999999999999999999999998764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.76  E-value=5.9e-18  Score=134.65  Aligned_cols=111  Identities=12%  Similarity=0.040  Sum_probs=95.0

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ...++.+|||+|||+|..+..+++. |++|+++|+ +.+++.++++....+.           .+++++...++.+.   
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl-----------~~~v~~~~~d~~~l---  129 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----------ADNITVKYGSFLEI---  129 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----------TTTEEEEECCTTSC---
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc-----------cccccccccccccc---
Confidence            3447889999999999999999875 889999999 7899999999887754           46789999777654   


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      +..+++||+|++..++++..+...+++.+.++|+|||.+++......
T Consensus       130 ~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~  176 (282)
T d2o57a1         130 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE  176 (282)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             cccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence            33457899999999999999999999999999999999999876544

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=5.9e-18  Score=129.54  Aligned_cols=104  Identities=18%  Similarity=0.280  Sum_probs=85.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||||||+|..+..+++.|.+|+++|+ ++|++.+++++...+.             .+.....|..+   ++..+
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~-------------~~~~~~~d~~~---l~~~~  100 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES-------------NVEFIVGDARK---LSFED  100 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEECCTTS---CCSCT
T ss_pred             CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccc-------------ccccccccccc---ccccC
Confidence            5679999999999999999999999999999 7899999988776532             45555644443   33446


Q ss_pred             CCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .+||+|++..++++..  ....+++.+.++|+|||.+++....
T Consensus       101 ~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         101 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            7999999999998854  5678999999999999999888764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.72  E-value=2.6e-17  Score=124.39  Aligned_cols=104  Identities=19%  Similarity=0.253  Sum_probs=86.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||||||+|..++.++++|.+|+++|+ +++++.++++++..+.            +++.+...|..+..    .+
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~------------~~~~~~~~d~~~~~----~~   93 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL------------DNLQTDLVDLNTLT----FD   93 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC------------TTEEEEECCTTTCC----CC
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc------------cchhhhheeccccc----cc
Confidence            5569999999999999999999999999999 7799999998887653            35777776555443    25


Q ss_pred             CCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ++||+|++..++++.  .....+++.+.++|+|||.+++....
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            689999999999874  34568999999999999999887543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.71  E-value=1.1e-17  Score=128.84  Aligned_cols=105  Identities=12%  Similarity=0.101  Sum_probs=87.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++++|||+|||+|..+..+++.|.+|+++|. +++++.++++..                .++.+...++.+..    
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~----------------~~~~~~~~~~~~~~----   77 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK----------------DGITYIHSRFEDAQ----   77 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC----------------SCEEEEESCGGGCC----
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc----------------cccccccccccccc----
Confidence            346889999999999999999999999999999 779998886532                24677775554432    


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHH-HhhCCCcEEEEEEeeccc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIF-ALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~-~~l~~~g~~~i~~~~r~~  186 (205)
                      .+++||+|++.++++|.++...+++.+. ++|+|||.+++..+.+..
T Consensus        78 ~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~  124 (225)
T d2p7ia1          78 LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANA  124 (225)
T ss_dssp             CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred             cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCccc
Confidence            3568999999999999999999999997 789999999999876543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=3.5e-17  Score=127.44  Aligned_cols=104  Identities=20%  Similarity=0.250  Sum_probs=84.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++++|||+|||||..++.+++.|++|+++|. ++|++.|++++..++.             ++.+...|+.+..    
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~-------------~i~~~~~d~~~l~----  101 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-------------KIEFLQGDVLEIA----  101 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEESCGGGCC----
T ss_pred             CCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc-------------cchheehhhhhcc----
Confidence            335678999999999999999999999999999 7899999999887642             5788887665543    


Q ss_pred             CCCCccEEEEc-ccccCC--cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGT-DVVYAE--HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~-d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .+++||+|++. .++++.  +....+++.+.++|+|||.+++..+
T Consensus       102 ~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            24589999986 455553  3456899999999999999998754

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=6.4e-17  Score=121.19  Aligned_cols=107  Identities=19%  Similarity=0.140  Sum_probs=87.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|..++.+|+.+++|+++|. +++++.+++|++.++.           .+++++...+..+.   ..
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl-----------~~~v~~~~gda~~~---~~   96 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL-----------GDNVTLMEGDAPEA---LC   96 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------CTTEEEEESCHHHH---HT
T ss_pred             CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCC-----------CcceEEEECchhhc---cc
Confidence            347899999999999999999999889999999 8899999999999964           46788888554332   22


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ..+.||.|++....   ...+.+++.+.+.|+|||.+++......
T Consensus        97 ~~~~~D~v~~~~~~---~~~~~~~~~~~~~LkpgG~lvi~~~~~e  138 (186)
T d1l3ia_          97 KIPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAILLE  138 (186)
T ss_dssp             TSCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred             ccCCcCEEEEeCcc---ccchHHHHHHHHHhCcCCEEEEEeeccc
Confidence            35689999998654   4568899999999999999888765443

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=2.5e-17  Score=127.56  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=80.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+.+|||+|||+|..+..+++.|++|+++|. +.|++.++++...                  .+...+   ...++..+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~------------------~~~~~~---~~~l~~~~  100 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK------------------NVVEAK---AEDLPFPS  100 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS------------------CEEECC---TTSCCSCT
T ss_pred             CCCEEEEECCCCchhcccccccceEEEEeeccccccccccccccc------------------cccccc---cccccccc
Confidence            5679999999999999999999999999999 7899988875221                  123333   33334446


Q ss_pred             CCccEEEEc-ccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          143 PPFDYIIGT-DVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       143 ~~fD~Ii~~-d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ++||+|++. +++++..+.+.+++.+.++|+|||.++++.+..
T Consensus       101 ~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         101 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             ccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence            799999975 788888899999999999999999999988643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.68  E-value=8.6e-17  Score=125.21  Aligned_cols=104  Identities=14%  Similarity=0.069  Sum_probs=84.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++++|||+|||+|..++.++++|.+|+++|. ++|++.|++++..++.             ++.+...|+.+..    
T Consensus        35 ~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~-------------~v~~~~~d~~~~~----   97 (246)
T d1y8ca_          35 NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-------------KPRLACQDISNLN----   97 (246)
T ss_dssp             TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-------------CCEEECCCGGGCC----
T ss_pred             CCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc-------------cceeeccchhhhc----
Confidence            345789999999999999999999999999999 7899999998877643             5788887766543    


Q ss_pred             CCCCccEEEEc-ccccCC---cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGT-DVVYAE---HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~-d~~y~~---~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..++||+|++. .++++.   .....+++.+.++|+|||.+++...
T Consensus        98 ~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_          98 INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            25689999975 455443   3556789999999999999998654

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.67  E-value=2.6e-17  Score=119.58  Aligned_cols=111  Identities=15%  Similarity=0.269  Sum_probs=89.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..++|++|||+|||||.+|+.++.+|+ +|+++|. +++++.+++|++.++.           .+++++...|+...  +
T Consensus        11 ~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~-----------~~~~~ii~~D~~~~--l   77 (152)
T d2esra1          11 PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----------ENRFTLLKMEAERA--I   77 (152)
T ss_dssp             SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----------GGGEEEECSCHHHH--H
T ss_pred             hhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccc-----------ccchhhhccccccc--c
Confidence            356899999999999999999999998 5999999 8899999999998864           45688888765543  1


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHH--hhCCCcEEEEEEeecc
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILVMFSLSM  185 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~i~~~~r~  185 (205)
                      .....+||+|++ |+.|........+..+..  +|+|+|.+++..+.+.
T Consensus        78 ~~~~~~fDiIf~-DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~~  125 (152)
T d2esra1          78 DCLTGRFDLVFL-DPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTV  125 (152)
T ss_dssp             HHBCSCEEEEEE-CCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             cccccccceeEe-chhhccchHHHHHHHHHHCCCcCCCeEEEEEeCCCC
Confidence            233678999999 566777777888888765  5899999998766544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.66  E-value=7.2e-16  Score=118.46  Aligned_cols=107  Identities=13%  Similarity=0.081  Sum_probs=84.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh----CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++.+|||||||||..++.+++.    +++|+++|. ++|++.|+++++....           ..++.+...+..+.   
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-----------~~~~~~~~~d~~~~---  104 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHV---  104 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-----------SSCEEEECSCTTTC---
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-----------cchhhhccchhhcc---
Confidence            5789999999999999999874    678999999 8899999999876532           23455544332222   


Q ss_pred             ccCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          139 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                        ...++|+|+++.++++.  +....+++.+.+.|+|||.+++....+..
T Consensus       105 --~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~  152 (225)
T d1im8a_         105 --EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE  152 (225)
T ss_dssp             --CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCS
T ss_pred             --ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccc
Confidence              24589999999988775  46779999999999999999998765543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.66  E-value=2.7e-16  Score=125.04  Aligned_cols=105  Identities=16%  Similarity=0.164  Sum_probs=87.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+..+|||+|||+|..++.+++.   +++|+++|+ +++++.+++++...+             .++++...|..+.. 
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~-------------~~~~f~~~d~~~~~-   90 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------------YDSEFLEGDATEIE-   90 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS-------------SEEEEEESCTTTCC-
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc-------------cccccccccccccc-
Confidence            346679999999999999999975   568999999 789999999987663             25677776655432 


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                         ..++||+|+++.++++..+...+++.+.+.|||||.+++..+.
T Consensus        91 ---~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          91 ---LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             ---CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ---ccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence               2457999999999999999999999999999999999988754

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=2e-16  Score=127.76  Aligned_cols=105  Identities=19%  Similarity=0.189  Sum_probs=84.7

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++|++|||||||+|++++.+|++|+ +|+++|.+++...++++++.|+.           .+++.+...+..+.   .
T Consensus        30 ~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~-----------~~~v~~~~~~~~~~---~   95 (316)
T d1oria_          30 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL-----------DHVVTIIKGKVEEV---E   95 (316)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC-----------TTTEEEEESCTTTC---C
T ss_pred             ccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCC-----------ccccceEeccHHHc---c
Confidence            345789999999999999999999997 59999996666788888888854           56788888665554   3


Q ss_pred             cCCCCccEEEEcccc---cCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          140 AVAPPFDYIIGTDVV---YAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~---y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      ...++||+|++..+.   +++..++.++..+.++|+|||.++-
T Consensus        96 ~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_          96 LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            345789999886444   3456789999999999999998864

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3.6e-16  Score=126.88  Aligned_cols=103  Identities=22%  Similarity=0.230  Sum_probs=84.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .++|++|||||||+|++++.+|++|+ +|+++|.++++..++++++.|+.           ..++.+...+..+.   ..
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~-----------~~~i~~i~~~~~~l---~~  101 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGF-----------SDKITLLRGKLEDV---HL  101 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTS---CC
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCc-----------cccceEEEeehhhc---cC
Confidence            45789999999999999999999998 59999997788899999988854           56788888655544   33


Q ss_pred             CCCCccEEEEcccc---cCCcChHhHHHHHHHhhCCCcEEE
Q 028673          141 VAPPFDYIIGTDVV---YAEHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~---y~~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                      ..++||+|++..+.   .+....+.++..+.++|+|||.++
T Consensus       102 ~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            45799999986555   446778889999999999999875

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.64  E-value=8.2e-17  Score=120.46  Aligned_cols=121  Identities=13%  Similarity=-0.061  Sum_probs=86.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|..++.+|++|.+|+++|+ ++|++.++++++..................+.+...++.+...  .
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~--~   95 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA--R   95 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH--H
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc--c
Confidence            457899999999999999999999999999999 7899999987754322110000000012334555655544321  1


Q ss_pred             CCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          141 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ....||+|+++.++++..  .....++.+.++|||||.+++....+
T Consensus        96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_          96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence            235799999998887643  46789999999999999988876544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=3.2e-15  Score=118.67  Aligned_cols=118  Identities=15%  Similarity=0.139  Sum_probs=92.5

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (205)
                      .....+.+...       ....+|.+|||+|||+|.+++.+++. |++|+++|+ +++++.+++.++..+.         
T Consensus        37 Q~~k~~~~~~~-------l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l---------  100 (280)
T d2fk8a1          37 QYAKVDLNLDK-------LDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT---------  100 (280)
T ss_dssp             HHHHHHHHHTT-------SCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC---------
T ss_pred             HHHHHHHHHHH-------cCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhcc---------
Confidence            34445555554       34557899999999999999998865 899999999 7799999988877643         


Q ss_pred             CCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       120 ~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                        ..++.+...|..+      .+.+||.|++.+++.+.  ..++.+++.+.++|||||++++....
T Consensus       101 --~~~~~~~~~d~~~------~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         101 --NRSRQVLLQGWED------FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             --SSCEEEEESCGGG------CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             --ccchhhhhhhhhh------hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence              3456666544433      24689999999999886  45689999999999999999987543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.1e-16  Score=120.35  Aligned_cols=108  Identities=16%  Similarity=0.027  Sum_probs=86.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ...+.+|||||||+|..+..+++. +.+|+++|+ ++|++.|++++..++.            .++++...+..+.   .
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~------------~~~~f~~~d~~~~---~  122 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------------RVRNYFCCGLQDF---T  122 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG------------GEEEEEECCGGGC---C
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc------------ccccccccccccc---c
Confidence            345678999999999999887655 557999999 7899999998876643            3567777665544   2


Q ss_pred             cCCCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          140 AVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ....+||+|++..++++...  ...+++.+++.|+|||.+++.....
T Consensus       123 ~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~  169 (222)
T d2ex4a1         123 PEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  169 (222)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence            34679999999999988654  3579999999999999999986543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.5e-15  Score=119.85  Aligned_cols=119  Identities=17%  Similarity=0.266  Sum_probs=91.9

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (205)
                      +..|.++.....        ..++.+|||||||+|.+++.+++..  ++|+++|+ +++++.|++|++.++.        
T Consensus        94 TE~lv~~~l~~~--------~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~--------  157 (274)
T d2b3ta1          94 TECLVEQALARL--------PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI--------  157 (274)
T ss_dssp             HHHHHHHHHHHS--------CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC--------
T ss_pred             hhhhhhhHhhhh--------cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc--------
Confidence            556666665541        2245789999999999999999864  57999999 7899999999999864        


Q ss_pred             CCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC-------------------------hHhHHHHHHHhhCC
Q 028673          119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-------------------------LEPLLQTIFALSGP  173 (205)
Q Consensus       119 ~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~-------------------------~~~ll~~~~~~l~~  173 (205)
                          .++.+...||.+..    ...+||+|++|+++...+.                         +..+++...++|+|
T Consensus       158 ----~~v~~~~~d~~~~~----~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~  229 (274)
T d2b3ta1         158 ----KNIHILQSDWFSAL----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS  229 (274)
T ss_dssp             ----CSEEEECCSTTGGG----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE
T ss_pred             ----ccceeeeccccccc----CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC
Confidence                36888887776532    2468999999998765332                         34577788888999


Q ss_pred             CcEEEEEEeec
Q 028673          174 KTTILVMFSLS  184 (205)
Q Consensus       174 ~g~~~i~~~~r  184 (205)
                      +|.+++.....
T Consensus       230 ~G~l~lEig~~  240 (274)
T d2b3ta1         230 GGFLLLEHGWQ  240 (274)
T ss_dssp             EEEEEEECCSS
T ss_pred             CCEEEEEECch
Confidence            99999976543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.7e-15  Score=121.93  Aligned_cols=105  Identities=21%  Similarity=0.229  Sum_probs=80.5

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ..++|++|||||||+|++++.+|+.|+ +|+++|.++....+++++..|+.           .+++.+...+..+.   .
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~-----------~~~i~~~~~~~~~l---~   97 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKL-----------EDTITLIKGKIEEV---H   97 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTS---C
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCC-----------CccceEEEeeHHHh---c
Confidence            456899999999999999999999997 59999995544556666666643           46788888554443   3


Q ss_pred             cCCCCccEEEEcccccC---CcChHhHHHHHHHhhCCCcEEEE
Q 028673          140 AVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~---~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      ....+||+|++..+.+.   ...++.++....++|+|||.++.
T Consensus        98 ~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          98 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            34579999998644443   45677888888899999998864

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=8e-15  Score=116.52  Aligned_cols=119  Identities=13%  Similarity=0.151  Sum_probs=97.1

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (205)
                      .+...+.+++...       ....+|.+|||||||.|-+++.+|+ .|++|+++++ ++.++.+++.++..+        
T Consensus        45 eAQ~~k~~~~~~~-------l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g--------  109 (285)
T d1kpga_          45 EAQIAKIDLALGK-------LGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSE--------  109 (285)
T ss_dssp             HHHHHHHHHHHTT-------TTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCC--------
T ss_pred             HHHHHHHHHHHHH-------cCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhh--------
Confidence            4556666777765       3566889999999999999998765 5999999999 778899998887764        


Q ss_pred             CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                         +.+++++...|+.+.      +.+||.|++-.++.+.  ...+.+++.+.++|+|||++++..-
T Consensus       110 ---~~~~v~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         110 ---NLRSKRVLLAGWEQF------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             ---CCSCEEEEESCGGGC------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ---hhhhhHHHHhhhhcc------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence               356888888776544      3689999999999886  4568999999999999999987654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.2e-15  Score=121.66  Aligned_cols=113  Identities=16%  Similarity=0.158  Sum_probs=83.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .+++|||+|||+|..++.+++.|.+|+++|+ ++|++.|+++...++....        .....+...+|...+......
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  127 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPA--------FDKWVIEEANWLTLDKDVPAG  127 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHH--------HHTCEEEECCGGGHHHHSCCT
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccc--------cceeeeeeccccccccccCCC
Confidence            4679999999999999999999999999999 7899999998876543111        113455566664432222235


Q ss_pred             CCccEEEEc-ccccCC-------cChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          143 PPFDYIIGT-DVVYAE-------HLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       143 ~~fD~Ii~~-d~~y~~-------~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .+||.|++. +++.+.       +....+++.+.++|+|||.+++....+
T Consensus       128 ~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  177 (292)
T d1xvaa_         128 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  177 (292)
T ss_dssp             TCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence            689999875 455442       235679999999999999999876543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.60  E-value=1.2e-15  Score=119.28  Aligned_cols=108  Identities=14%  Similarity=0.050  Sum_probs=85.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ++++|||||||+|.....+++.+. +|+|+|+ ++|++.|++.+...+.           ..++.+...|.....  ...
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~-----------~~~v~f~~~D~~~~~--~~~   90 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----------RFKVFFRAQDSYGRH--MDL   90 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----------SSEEEEEESCTTTSC--CCC
T ss_pred             CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC-----------CcceEEEEcchhhhc--ccc
Confidence            578999999999988888888875 6999999 7899999987766532           346777786654332  123


Q ss_pred             CCCccEEEEcccccCC----cChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          142 APPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ..+||+|++..++++.    .....+++.+.++|+|||.++++.+..
T Consensus        91 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~  137 (252)
T d1ri5a_          91 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  137 (252)
T ss_dssp             SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             cccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence            5689999999988764    345689999999999999999987643

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=2e-14  Score=114.55  Aligned_cols=120  Identities=14%  Similarity=0.114  Sum_probs=94.1

Q ss_pred             ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHH-HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCC
Q 028673           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (205)
Q Consensus        40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (205)
                      .+.....+++...       ....+|.+|||||||.|.+++.+| +.|++|+++++ ++.++.+++.++..+.       
T Consensus        44 ~Aq~~k~~~~~~~-------l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l-------  109 (291)
T d1kpia_          44 EAQYAKRKLALDK-------LNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-------  109 (291)
T ss_dssp             HHHHHHHHHHHHT-------TCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHHHHHHHh-------cCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhcc-------
Confidence            4455566666665       356688999999999999999887 56999999999 7788888888877643       


Q ss_pred             CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc---------ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~---------~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                          ..++.+...|..      ..+++||.|++-.++.|..         .++.+++.+.++|+|||++++..-.
T Consensus       110 ----~~~v~~~~~d~~------~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         110 ----PRRKEVRIQGWE------EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             ----SSCEEEEECCGG------GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             ----chhhhhhhhccc------ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence                456777665543      2256899999999997753         4689999999999999999987543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=1.6e-15  Score=112.01  Aligned_cols=109  Identities=20%  Similarity=0.165  Sum_probs=77.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-CCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~~~~  139 (205)
                      ..+|.+|||+|||+|.+|+.++.+|++|+++|. +++++.+++|++.++.           ..  .+...+.... ....
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~-----------~~--~v~~~~~d~~~~~~~  105 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL-----------GA--RVVALPVEVFLPEAK  105 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC-----------CC--EEECSCHHHHHHHHH
T ss_pred             ccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhcc-----------cc--ceeeeehhccccccc
Confidence            346889999999999999999999999999999 8899999999999864           22  2322221111 0112


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHH-HhhCCCcEEEEEEeec
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIF-ALSGPKTTILVMFSLS  184 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~-~~l~~~g~~~i~~~~r  184 (205)
                      ....+||+|++. +-|..+..+.+...+. .+++|||.+++.++..
T Consensus       106 ~~~~~fD~If~D-PPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~~  150 (171)
T d1ws6a1         106 AQGERFTVAFMA-PPYAMDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             HTTCCEEEEEEC-CCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             ccCCccceeEEc-cccccCHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence            235689999985 4566655554444443 4689999988876543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.7e-15  Score=114.86  Aligned_cols=136  Identities=17%  Similarity=0.024  Sum_probs=95.9

Q ss_pred             cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhc--cCC-
Q 028673           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS--QMN-  116 (205)
Q Consensus        41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~--~~~-  116 (205)
                      ....|.+++.+.       ....++.+|||+|||+|..++.+|+.|++|+++|+ +++++.++++.........  ... 
T Consensus        29 ~~~~l~~~~~~~-------l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~  101 (229)
T d2bzga1          29 GHQLLKKHLDTF-------LKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPG  101 (229)
T ss_dssp             CCHHHHHHHHHH-------HTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTT
T ss_pred             CCHHHHHHHHHh-------cCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccc
Confidence            356677777654       12346789999999999999999999999999999 7799888876543321000  000 


Q ss_pred             --CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          117 --PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       117 --~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                        .......++++...|+.+..  ......||+|+...++++.  +..+..++.+.++|+|||.+++....+.
T Consensus       102 ~~~~~~~~~~v~~~~~d~~~l~--~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~  172 (229)
T d2bzga1         102 TKVFKSSSGNISLYCCSIFDLP--RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYD  172 (229)
T ss_dssp             CEEEEETTSSEEEEESCGGGGG--GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred             cceeeecCCcEEEEEcchhhcc--ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccC
Confidence              00012346777775554432  2235689999999888774  5678899999999999999888766543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.58  E-value=3.2e-15  Score=117.08  Aligned_cols=105  Identities=12%  Similarity=0.011  Sum_probs=81.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..+.+|||+|||+|.++..++.. +.+|+++|. +++++.|++++...              .++++...+..+.   ..
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~--------------~~~~~~~~d~~~~---~~  154 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--------------PVGKFILASMETA---TL  154 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--------------SEEEEEESCGGGC---CC
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc--------------ccceeEEcccccc---cc
Confidence            35679999999999999877654 567999999 78999998765432              3466766554433   33


Q ss_pred             CCCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          141 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      .+.+||+|++..+++|...  ...+++.+++.|+|||.+++.....
T Consensus       155 ~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence            4678999999999998754  4588999999999999999986543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=9.1e-15  Score=118.00  Aligned_cols=151  Identities=13%  Similarity=0.123  Sum_probs=104.5

Q ss_pred             EEEEEEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEE
Q 028673           13 VINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITT   92 (205)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~   92 (205)
                      .+.+.-.|..+.+.-. .+..+|..+-.-  ....++ .          ..+|++|||++||||..++.+|+.+++|+++
T Consensus       108 ~~~v~E~G~~f~v~l~-~~~~tG~flDqr--~~r~~~-~----------~~~g~rVLDl~~gtG~~s~~~a~g~~~V~~v  173 (318)
T d1wxxa2         108 RVQVQEGRVRYLVDLR-AGQKTGAYLDQR--ENRLYM-E----------RFRGERALDVFSYAGGFALHLALGFREVVAV  173 (318)
T ss_dssp             EEEEEETTEEEEEECS-TTSCCCCCGGGH--HHHHHG-G----------GCCEEEEEEETCTTTHHHHHHHHHEEEEEEE
T ss_pred             eEEEEECCEEEEEech-hccccccchhhh--hhHHHH-H----------HhCCCeeeccCCCCcHHHHHHHhcCCcEEee
Confidence            3445555555554322 255677654321  222222 2          2368999999999999999998877789999


Q ss_pred             cC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-CcccCCCCccEEEEcccccCCc---------ChH
Q 028673           93 DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAEH---------LLE  161 (205)
Q Consensus        93 D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~~~~~fD~Ii~~d~~y~~~---------~~~  161 (205)
                      |. +.+++.+++|++.|+.            +++++...|..+.. .......+||+|++.++.+...         .+.
T Consensus       174 D~s~~al~~a~~n~~~ngl------------~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~  241 (318)
T d1wxxa2         174 DSSAEALRRAEENARLNGL------------GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYK  241 (318)
T ss_dssp             ESCHHHHHHHHHHHHHTTC------------TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC------------CCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHH
Confidence            99 7899999999999975            45777776554321 1222356899999987766532         234


Q ss_pred             hHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673          162 PLLQTIFALSGPKTTILVMFSLSMFSLT  189 (205)
Q Consensus       162 ~ll~~~~~~l~~~g~~~i~~~~r~~~~~  189 (205)
                      .++..+.++|+|||.++++......+..
T Consensus       242 ~l~~~a~~lLkpGG~Lv~~scs~~~~~~  269 (318)
T d1wxxa2         242 EVNLRAIKLLKEGGILATASCSHHMTEP  269 (318)
T ss_dssp             HHHHHHHHTEEEEEEEEEEECCTTSCHH
T ss_pred             HHHHHHHHHcCCCCEEEEEeCCcccCHH
Confidence            6788888899999999998876655544

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.57  E-value=1.3e-14  Score=113.48  Aligned_cols=103  Identities=16%  Similarity=0.092  Sum_probs=84.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      ..++|||+|||+|..++.++++.  .+++++|++++++.+++++...+.           .+++++...|..+.     .
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~rv~~~~~D~~~~-----~  143 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL-----------SDRVDVVEGDFFEP-----L  143 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC-----C
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhc-----------ccchhhccccchhh-----c
Confidence            44789999999999999999884  579999998899999999887743           46788888765432     2


Q ss_pred             CCCccEEEEcccccCCcCh--HhHHHHHHHhhCCCcEEEEEEe
Q 028673          142 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      +.+||+|+++.++++....  ..+++.+++.|+|||++++...
T Consensus       144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         144 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            3579999999999876443  4789999999999999999864

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.56  E-value=5.3e-15  Score=111.29  Aligned_cols=98  Identities=21%  Similarity=0.286  Sum_probs=64.6

Q ss_pred             cCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cc
Q 028673           19 LGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IE   96 (205)
Q Consensus        19 ~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~   96 (205)
                      ...++.++|+++.....          +.++..-..     ..+++|++|||+|||||.+|+.++++|+ +|+++|+ ++
T Consensus        18 ~~~~~~leQy~T~~~~a----------~~~~~~~~~-----~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~   82 (197)
T d1ne2a_          18 GNFKNYLEQYPTDASTA----------AYFLIEIYN-----DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPD   82 (197)
T ss_dssp             C--------CCCCHHHH----------HHHHHHHHH-----HTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCCcccccCCCCHHHH----------HHHHHHHHH-----cCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHH
Confidence            34567788888653332          222211100     2477899999999999999999999987 5999999 78


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccc
Q 028673           97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV  154 (205)
Q Consensus        97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~  154 (205)
                      +++.+++|+.                 ++.+...|..+.      +++||+|++++++
T Consensus        83 a~~~ar~N~~-----------------~~~~~~~D~~~l------~~~fD~Vi~NPPf  117 (197)
T d1ne2a_          83 AIETAKRNCG-----------------GVNFMVADVSEI------SGKYDTWIMNPPF  117 (197)
T ss_dssp             HHHHHHHHCT-----------------TSEEEECCGGGC------CCCEEEEEECCCC
T ss_pred             HHHHHHHccc-----------------cccEEEEehhhc------CCcceEEEeCccc
Confidence            9999888753                 346666555432      4689999998875

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.54  E-value=2.7e-14  Score=108.65  Aligned_cols=130  Identities=17%  Similarity=0.141  Sum_probs=92.1

Q ss_pred             cccccccHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhh
Q 028673           35 GTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTS  110 (205)
Q Consensus        35 g~~~W~~~~-~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~  110 (205)
                      |.+.|+.-. -||..+.....     ....+|.+|||||||+|.....+++..  .+|+++|+ +++++.++++++..  
T Consensus        31 ~~r~w~p~rsklaa~i~~g~~-----l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~--  103 (209)
T d1nt2a_          31 GYREWVPWRSKLAAMILKGHR-----LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--  103 (209)
T ss_dssp             TEEECCGGGCHHHHHHHTSCC-----CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--
T ss_pred             ceeeeCCcchHHHHHHhcccc-----CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc--
Confidence            446776332 45555544211     245578999999999999999999763  47999999 88999999887664  


Q ss_pred             hhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       111 ~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                                  +++.+...+.............+|+|+. + +++....+.+++.+.+.|+|||.++++...+.
T Consensus       104 ------------~ni~~i~~d~~~~~~~~~~~~~vd~v~~-~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  164 (209)
T d1nt2a_         104 ------------NNIIPLLFDASKPWKYSGIVEKVDLIYQ-D-IAQKNQIEILKANAEFFLKEKGEVVIMVKARS  164 (209)
T ss_dssp             ------------SSEEEECSCTTCGGGTTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHH
T ss_pred             ------------CCceEEEeeccCccccccccceEEEEEe-c-ccChhhHHHHHHHHHHHhccCCeEEEEEEccc
Confidence                        3577777665554433333345555554 2 56667778999999999999999999876543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=1.2e-14  Score=109.86  Aligned_cols=98  Identities=12%  Similarity=0.115  Sum_probs=78.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++.+|||+|||+|..+..+    ++++++|. +.+++.++++                   ++.+...+..+   ++..+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~----~~~~giD~s~~~~~~a~~~-------------------~~~~~~~d~~~---l~~~~   89 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIARKR-------------------GVFVLKGTAEN---LPLKD   89 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHH----TCCEEEESCHHHHHHHHHT-------------------TCEEEECBTTB---CCSCT
T ss_pred             CCCeEEEECCCCccccccc----ceEEEEeCChhhccccccc-------------------ccccccccccc---ccccc
Confidence            3458999999999877665    35799999 7788887752                   25666644433   33446


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      ++||+|+++.++++..++..+++.+.++|+|||.+++..+.....
T Consensus        90 ~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~  134 (208)
T d1vlma_          90 ESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESF  134 (208)
T ss_dssp             TCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSH
T ss_pred             ccccccccccccccccccccchhhhhhcCCCCceEEEEecCCcch
Confidence            799999999999999999999999999999999999998866543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=7.5e-15  Score=109.51  Aligned_cols=108  Identities=14%  Similarity=0.122  Sum_probs=85.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      +.+++||||+||||.+|+.++.+|++ |+++|. +++++.+++|++.++.            .++.+...|..+.  +..
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~------------~~~~ii~~d~~~~--l~~  107 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------------GNARVVNSNAMSF--LAQ  107 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCHHHH--HSS
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc------------cceeeeeeccccc--ccc
Confidence            47889999999999999999999985 999999 7899999999987653            3566665443322  222


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHH--hhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~i~~~~r~  185 (205)
                      ...+||+|++. +.|.....+.++..+.+  +|+++|.+++....+.
T Consensus       108 ~~~~fDlIf~D-PPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~~  153 (183)
T d2fpoa1         108 KGTPHNIVFVD-PPFRRGLLEETINLLEDNGWLADEALIYVESEVEN  153 (183)
T ss_dssp             CCCCEEEEEEC-CSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             cccccCEEEEc-CccccchHHHHHHHHHHCCCCCCCeEEEEEecCcC
Confidence            35689999995 55777888899988876  4899999988766544

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=1.3e-14  Score=117.46  Aligned_cols=117  Identities=16%  Similarity=0.162  Sum_probs=90.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~  140 (205)
                      +|++|||+|||+|..|+.+++.|+ +|+++|+ +++++.+++|++.|+.           .+++++...|..+.. ....
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl-----------~~~~~~~~~d~~~~~~~~~~  213 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----------EDRMKFIVGSAFEEMEKLQK  213 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHHHH
T ss_pred             CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCC-----------CccceeeechhhhhhHHHHh
Confidence            588999999999999999999987 5999999 7899999999999975           346777775432211 1122


Q ss_pred             CCCCccEEEEcccccCCc---------ChHhHHHHHHHhhCCCcEEEEEEeeccchhHHH
Q 028673          141 VAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILVMFSLSMFSLTFF  191 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~---------~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~~~  191 (205)
                      ...+||+|++.++.+...         .+..++..+.++|+|||.++++...+..+...|
T Consensus       214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f  273 (324)
T d2as0a2         214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMF  273 (324)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHH
T ss_pred             ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHH
Confidence            356899999977765532         245678888889999999999988777665544

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.54  E-value=5.8e-14  Score=112.16  Aligned_cols=151  Identities=18%  Similarity=0.119  Sum_probs=103.6

Q ss_pred             ccEEEEEEcCeEEEEEeCCCCcccccccccc--HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE
Q 028673           11 TSVINLEVLGHQLQFSQDPNSKHLGTTVWDA--SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN   88 (205)
Q Consensus        11 ~~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~--~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~   88 (205)
                      .....++..|.++.+.-. .+.++|...--.  -..+++++..          ..++++||||+||||..|+.+++.|++
T Consensus        88 p~~~~v~e~gl~f~v~~~-~~~~tG~f~dqr~nr~~~~~~~~~----------~~~~~rVLdlf~~tG~~sl~aa~~GA~  156 (309)
T d2igta1          88 GETWPLSLLGVEFLGRFT-AFRHVGVFPEQIVHWEWLKNAVET----------ADRPLKVLNLFGYTGVASLVAAAAGAE  156 (309)
T ss_dssp             CSEEEEEETTEEEEEECC-SSSCCSCCGGGHHHHHHHHHHHHH----------SSSCCEEEEETCTTCHHHHHHHHTTCE
T ss_pred             CCeEEEEEeEEEEEEecc-CCCccccccchhHHHHHHHHHHhh----------ccCCCeEEEecCCCcHHHHHHHhCCCe
Confidence            345666777777766533 356777543211  1123333432          236889999999999999999999999


Q ss_pred             EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-CcccCCCCccEEEEcccccCC---------
Q 028673           89 VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAE---------  157 (205)
Q Consensus        89 v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~~~~~fD~Ii~~d~~y~~---------  157 (205)
                      |+++|. +.+++.+++|++.|+..          ..++++...|..+.- .......+||+||+.++-|..         
T Consensus       157 V~~VD~s~~al~~a~~N~~ln~~~----------~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~  226 (309)
T d2igta1         157 VTHVDASKKAIGWAKENQVLAGLE----------QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQL  226 (309)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHTCT----------TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEH
T ss_pred             EEEEeChHHHHHHHHHhhhhhccc----------CCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHH
Confidence            999999 78999999999999752          235777774443221 011225689999998776642         


Q ss_pred             -cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          158 -HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       158 -~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                       .....++..+..+++|+|.++++..
T Consensus       227 ~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         227 FDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEec
Confidence             2356788888999999997665544

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.52  E-value=6.6e-15  Score=109.72  Aligned_cols=112  Identities=16%  Similarity=0.245  Sum_probs=87.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~  138 (205)
                      ..+|++||||+||||.+|+.++.+|++ |+++|. +++++.+++|++.++.           ..++.+...|..+.- ..
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~-----------~~~~~i~~~D~~~~l~~~  107 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----------PEKFEVRKMDANRALEQF  107 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc-----------ccccccccccchhhhhhh
Confidence            457899999999999999999999995 999999 7899999999988754           346777775543321 11


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHH--hhCCCcEEEEEEeecc
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILVMFSLSM  185 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~i~~~~r~  185 (205)
                      .....+||+|++ |+-|.......+++.+.+  +|+++|.+++....+.
T Consensus       108 ~~~~~~fDlIfl-DPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~~~  155 (182)
T d2fhpa1         108 YEEKLQFDLVLL-DPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV  155 (182)
T ss_dssp             HHTTCCEEEEEE-CCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             cccCCCcceEEe-chhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCCCC
Confidence            123558999998 555777788888888865  5899998887765443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.6e-15  Score=113.52  Aligned_cols=103  Identities=18%  Similarity=0.197  Sum_probs=77.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +|++|||+|||+|..+..+++.+ ++|+++|+ +.+++.++++++...             .++.....++.... ....
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~-~~~~  118 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVA-PTLP  118 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHG-GGSC
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc-------------cccccccccccccc-cccc
Confidence            57899999999999999999875 46999999 789999998876542             34555554443322 1223


Q ss_pred             CCCccEEEE-----cccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          142 APPFDYIIG-----TDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       142 ~~~fD~Ii~-----~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ..+||.|+.     ...+++....+.+++.+.++|+|||.+++.
T Consensus       119 ~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         119 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            568998874     334444556778999999999999998764

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.51  E-value=5.9e-14  Score=113.01  Aligned_cols=120  Identities=17%  Similarity=0.128  Sum_probs=91.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-CCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~~~~  139 (205)
                      .+|++|||++||||..|+.++..|+ +|+++|. +.+++.+++|++.|+..          ..++++...|.-+. ....
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~----------~~~~~~i~~d~~~~l~~~~  212 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD----------MANHQLVVMDVFDYFKYAR  212 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----------CTTEEEEESCHHHHHHHHH
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc----------CcceEEEEccHHHHHHHHH
Confidence            3689999999999999999999888 5999999 78999999999999752          24677777544221 1112


Q ss_pred             cCCCCccEEEEcccccCCc---------ChHhHHHHHHHhhCCCcEEEEEEeeccchhHHHH
Q 028673          140 AVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFC  192 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~---------~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~~~~  192 (205)
                      ....+||+|+..++-+...         .+..|++.+.++++|||.++++...+......|.
T Consensus       213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~  274 (317)
T d2b78a2         213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFK  274 (317)
T ss_dssp             HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHH
T ss_pred             hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHH
Confidence            2356899999987766421         3557888899999999999999987777666543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.51  E-value=6.5e-14  Score=107.94  Aligned_cols=132  Identities=11%  Similarity=0.037  Sum_probs=96.1

Q ss_pred             cccccccHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhh
Q 028673           35 GTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTS  110 (205)
Q Consensus        35 g~~~W~~~~-~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~  110 (205)
                      ..+.|+.-. -||..+......    ....+|.+|||||||+|..+..+|..+  .+|+++|+ +.|++.++.++..+  
T Consensus        48 e~r~w~p~rsklaA~i~~gl~~----l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--  121 (230)
T d1g8sa_          48 EYRIWNPNKSKLAAAIIKGLKV----MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--  121 (230)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCC----CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--
T ss_pred             eeeeECCCccHHHHHHHhhHHh----CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--
Confidence            345675433 556555543211    234578899999999999999999875  47999999 78999888875544  


Q ss_pred             hhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       111 ~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                                  .++.....+........  ...+|++++...+++....+.+++.+.+.|+|||.++++...+..
T Consensus       122 ------------~ni~~i~~d~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~  183 (230)
T d1g8sa_         122 ------------ENIIPILGDANKPQEYA--NIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI  183 (230)
T ss_dssp             ------------TTEEEEECCTTCGGGGT--TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGT
T ss_pred             ------------cccceEEEeeccCcccc--cccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeecccc
Confidence                        35666666655544332  446777776667788888899999999999999999999776654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=9.1e-14  Score=105.95  Aligned_cols=100  Identities=26%  Similarity=0.252  Sum_probs=75.8

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+|.+|||+|||||..+..+|+. +  .+|+++|. +++++.+++|++..+.            .++.+..   ++..
T Consensus        72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~------------~n~~~~~---~d~~  136 (213)
T d1dl5a1          72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------------ENVIFVC---GDGY  136 (213)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEE---SCGG
T ss_pred             hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc------------ccccccc---CchH
Confidence            4557899999999999999999975 3  47999999 8899999999988754            4566655   3333


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .......+||.|+++..+.+.  .    +.+.+.|+|||++++..
T Consensus       137 ~~~~~~~~fD~I~~~~~~~~~--p----~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         137 YGVPEFSPYDVIFVTVGVDEV--P----ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             GCCGGGCCEEEEEECSBBSCC--C----HHHHHHEEEEEEEEEEB
T ss_pred             HccccccchhhhhhhccHHHh--H----HHHHHhcCCCcEEEEEE
Confidence            223345689999998776643  2    34567799999998754

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.50  E-value=4.3e-14  Score=106.84  Aligned_cols=78  Identities=27%  Similarity=0.360  Sum_probs=62.9

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+++|++|||+|||||.+++.++.+|+ +|+++|+ +++++.+++|++.++.             +..+...|...   
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-------------~~~~~~~d~~~---  105 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-------------KFKVFIGDVSE---  105 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------------SEEEEESCGGG---
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-------------CceEEECchhh---
Confidence            3577899999999999999999999987 6999999 7899999999887753             45665544322   


Q ss_pred             cccCCCCccEEEEcccccC
Q 028673          138 IKAVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~  156 (205)
                         .+.+||+|++++++..
T Consensus       106 ---~~~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1         106 ---FNSRVDIVIMNPPFGS  121 (201)
T ss_dssp             ---CCCCCSEEEECCCCSS
T ss_pred             ---hCCcCcEEEEcCcccc
Confidence               2568999999887644

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3e-14  Score=112.60  Aligned_cols=107  Identities=18%  Similarity=0.284  Sum_probs=79.5

Q ss_pred             CeEEEeCCCccHHHHHHHHh------C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           66 KRVIELGAGCGVAGFGMALL------G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~------g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+|||+|||+|..+..++..      +  .+++++|. +.|++.++++++...           ...++.   .+|....
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-----------~~~~~~---~~~~~~~  107 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-----------NLENVK---FAWHKET  107 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-----------SCTTEE---EEEECSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-----------cccccc---ccchhhh
Confidence            37999999999988877643      2  25899999 779999998876431           112232   2332221


Q ss_pred             --------CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          137 --------HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       137 --------~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                              .....+++||+|++..++|+..+++.+++.+.++|+|||.+++.......
T Consensus       108 ~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~  165 (280)
T d1jqea_         108 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS  165 (280)
T ss_dssp             HHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred             hhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence                    11223679999999999999999999999999999999999888765544

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.48  E-value=1.4e-13  Score=107.78  Aligned_cols=109  Identities=19%  Similarity=0.172  Sum_probs=83.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      +..+|.+|||+|||+|.+++.+|+. |  .+|+++|. +++++.|++|++....         ...+++.+...|..+. 
T Consensus        93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~---------~~~~nv~~~~~d~~~~-  162 (264)
T d1i9ga_          93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---------QPPDNWRLVVSDLADS-  162 (264)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---------SCCTTEEEECSCGGGC-
T ss_pred             CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc---------CCCceEEEEecccccc-
Confidence            4457899999999999999999986 4  47999999 8899999999987532         1235677777554432 


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                        ...+..||.|+.     +...+...+..+.+.|||||.+++..+.-.+
T Consensus       163 --~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Q  205 (264)
T d1i9ga_         163 --ELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQ  205 (264)
T ss_dssp             --CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred             --cccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCccCh
Confidence              234678999986     2355568899999999999998776654443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.48  E-value=9.3e-14  Score=108.14  Aligned_cols=102  Identities=14%  Similarity=0.135  Sum_probs=81.6

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+|.+|||+|||+|.+++.+|+. +  .+|+++|. +++++.|++|++.++.           ..++++...|..+..
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-----------~~nv~~~~~Di~~~~  150 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----------IGNVRTSRSDIADFI  150 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----------CTTEEEECSCTTTCC
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-----------CCceEEEEeeeeccc
Confidence            4557899999999999999999975 3  47999999 7899999999988632           457888887665442


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                          ....||.|+..     ......+++.+.+.|||||.+++..+
T Consensus       151 ----~~~~fD~V~ld-----~p~p~~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         151 ----SDQMYDAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             ----CSCCEEEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             ----ccceeeeeeec-----CCchHHHHHHHHHhcCCCceEEEEeC
Confidence                24689999863     34556789999999999999887655

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.47  E-value=6.5e-14  Score=104.33  Aligned_cols=113  Identities=17%  Similarity=0.119  Sum_probs=84.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      +.+.+||||.||||.+|+.++.+|++ |+++|. .++++.+++|++..+..          .....+...+..+......
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~----------~~~~~~~~~d~~~~l~~~~  111 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----------SEQAEVINQSSLDFLKQPQ  111 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----------TTTEEEECSCHHHHTTSCC
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc----------ccccccccccccccccccc
Confidence            36789999999999999999999995 999999 78999999999876431          1234444432221111112


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHH--hhCCCcEEEEEEeeccc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILVMFSLSMF  186 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~i~~~~r~~  186 (205)
                      ...+||+|++ |+-|.....+.+++.+..  +|+++|.+++..+.+..
T Consensus       112 ~~~~fDlIFl-DPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~~~  158 (183)
T d2ifta1         112 NQPHFDVVFL-DPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDKP  158 (183)
T ss_dssp             SSCCEEEEEE-CCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSSC
T ss_pred             cCCcccEEEe-chhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecCCCC
Confidence            3457999988 677888888899998876  58999999998776554

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.46  E-value=6.7e-14  Score=107.31  Aligned_cols=98  Identities=15%  Similarity=0.181  Sum_probs=74.1

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ...+|.+|||+|||+|..+..+|+.+.+|+++|. +++++.+++|....              .++.+...|-...   .
T Consensus        67 ~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~--------------~nv~~~~~d~~~g---~  129 (224)
T d1vbfa_          67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY--------------NNIKLILGDGTLG---Y  129 (224)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC--------------SSEEEEESCGGGC---C
T ss_pred             hhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc--------------cccccccCchhhc---c
Confidence            4557889999999999999999999999999999 88889998876543              4677777543222   1


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ....+||.|+++..+.+      +...+.+.|+|||++++-.
T Consensus       130 ~~~~pfD~Iiv~~a~~~------ip~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         130 EEEKPYDRVVVWATAPT------LLCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             GGGCCEEEEEESSBBSS------CCHHHHHTEEEEEEEEEEE
T ss_pred             hhhhhHHHHHhhcchhh------hhHHHHHhcCCCCEEEEEE
Confidence            22468999998765532      2344567899999988753

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.46  E-value=3.3e-13  Score=105.70  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=80.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +|.+|||+|||+|.+++.+|+.|+ +|+++|+ +++++.+++|++.|+.           .+++++...|..+..    .
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l-----------~~~v~~~~~D~~~~~----~  171 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFP----G  171 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCC----C
T ss_pred             CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCC-----------CceEEEEEcchHHhc----c
Confidence            588999999999999999999885 7999999 8899999999999965           467888887665442    2


Q ss_pred             CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ...||.|+++++.+.    ..++..+.+++++||.+.+-.
T Consensus       172 ~~~~D~Ii~~~p~~~----~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         172 ENIADRILMGYVVRT----HEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             CSCEEEEEECCCSSG----GGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEECCCCch----HHHHHHHHhhcCCCCEEEEEe
Confidence            467999999866543    345666778899999876543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9e-15  Score=113.93  Aligned_cols=125  Identities=16%  Similarity=0.169  Sum_probs=81.9

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccC---------CCCC--------C
Q 028673           60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQM---------NPGS--------D  120 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---------~~~~--------~  120 (205)
                      +...++++|||||||+|..++.++..+. +|+++|+ +.+++.++++++.+.......         ....        .
T Consensus        47 ~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (257)
T d2a14a1          47 PGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  126 (257)
T ss_dssp             TTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence            3455788999999999999988887776 5999999 789999999987653211000         0000        0


Q ss_pred             CCCceE-EEEeecCCC-CCcccCCCCccEEEEcccccCC----cChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          121 LLGSIQ-AVELDWGNE-DHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       121 ~~~~i~-~~~~dw~~~-~~~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ....+. ....+.... .......++||+|++..++++.    +.+..+++.+.++|||||.++++...+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~  196 (257)
T d2a14a1         127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR  196 (257)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence            000011 111111111 1112335689999999998764    356689999999999999999987644

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.45  E-value=2.1e-13  Score=106.67  Aligned_cols=102  Identities=15%  Similarity=0.074  Sum_probs=83.5

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .++|||+|||+|..+..++++  +.+++++|++++++.++++++..+.           .+++.+...+..+.     .+
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~-----------~~ri~~~~~d~~~~-----~p  145 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL-----------ADRVTVAEGDFFKP-----LP  145 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC-----CS
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCC-----------cceeeeeeeecccc-----cc
Confidence            368999999999999999988  4579999999899999999887743           46788887554322     23


Q ss_pred             CCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEe
Q 028673          143 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ..||+|+++.++++...  ...+++.+++.|+|||+++|...
T Consensus       146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            56999999999987644  35789999999999999999865

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.44  E-value=4.4e-13  Score=102.91  Aligned_cols=132  Identities=16%  Similarity=0.149  Sum_probs=93.7

Q ss_pred             ccccccc-HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhh
Q 028673           35 GTTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNT  109 (205)
Q Consensus        35 g~~~W~~-~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~  109 (205)
                      ..++|+. ---||..+.....+    ....+|.+|||||||+|..+..+|+. |  .+|+++|+ +.+++.++.+++.. 
T Consensus        47 e~R~w~p~rSKlaa~i~~~l~~----l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-  121 (227)
T d1g8aa_          47 EYRIWNPNRSKLGAAIMNGLKN----FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-  121 (227)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCC----CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-
T ss_pred             eEEEECCCccHHHHHHHccccc----cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-
Confidence            3455643 11355555443211    23457899999999999999999986 4  47999999 88999998876554 


Q ss_pred             hhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                                   .++.....+-............+|+|+..  +.+....+.+++.+.+.|+|||.++++...+..
T Consensus       122 -------------~~~~~i~~d~~~~~~~~~~~~~vD~i~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~  183 (227)
T d1g8aa_         122 -------------RNIVPILGDATKPEEYRALVPKVDVIFED--VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSI  183 (227)
T ss_dssp             -------------TTEEEEECCTTCGGGGTTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGT
T ss_pred             -------------CCceEEEEECCCcccccccccceEEEEEE--ccccchHHHHHHHHHHhcccCCeEEEEEECCcc
Confidence                         24566665555555444445678888763  555677788999999999999999998765543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.8e-12  Score=100.94  Aligned_cols=82  Identities=18%  Similarity=0.173  Sum_probs=65.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC---
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---  137 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~---  137 (205)
                      +..++||+|||+|.+++.+++.  +.+|+++|+ +++++.|++|++.|+.           .+++.+...++.....   
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l-----------~~~~~~~~~~~~~~~~~~~  129 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----------SDLIKVVKVPQKTLLMDAL  129 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTCSSTTTS
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC-----------CcceeeeeeccHHhhhhhh
Confidence            4468999999999999999876  778999999 8899999999999954           5678888776654321   


Q ss_pred             cccCCCCccEEEEcccccC
Q 028673          138 IKAVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~  156 (205)
                      ......+||+|++|+++|.
T Consensus       130 ~~~~~~~fD~ivsNPPY~~  148 (250)
T d2h00a1         130 KEESEIIYDFCMCNPPFFA  148 (250)
T ss_dssp             TTCCSCCBSEEEECCCCC-
T ss_pred             hhcccCceeEEEecCcccc
Confidence            1122468999999999986

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=6.9e-13  Score=104.21  Aligned_cols=121  Identities=15%  Similarity=0.140  Sum_probs=86.7

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (205)
                      +..|.+++....       ......+|+|+|||+|.+++.+++. .++|+++|+ +++++.+++|++.|+.         
T Consensus        95 TE~lv~~~~~~~-------~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~---------  158 (271)
T d1nv8a_          95 TEELVELALELI-------RKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV---------  158 (271)
T ss_dssp             HHHHHHHHHHHH-------HHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC---------
T ss_pred             hhhhhhhhhhhh-------ccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCC---------
Confidence            455666655431       1113468999999999999998876 457999999 8899999999999865         


Q ss_pred             CCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc--------------------ChHhHHHHHHHhhCCCcEEEE
Q 028673          120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------LLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       120 ~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------~~~~ll~~~~~~l~~~g~~~i  179 (205)
                        ..++.+...+|.+..  .....+||+|++|+++-..+                    -++-..+.+.++|+|||.+++
T Consensus       159 --~~~~~i~~~~~~~~~--~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~  234 (271)
T d1nv8a_         159 --SDRFFVRKGEFLEPF--KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  234 (271)
T ss_dssp             --TTSEEEEESSTTGGG--GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             --CceeEEeeccccccc--ccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE
Confidence              456788887776543  22346899999998864421                    022233445678999999888


Q ss_pred             EEe
Q 028673          180 MFS  182 (205)
Q Consensus       180 ~~~  182 (205)
                      ...
T Consensus       235 Eig  237 (271)
T d1nv8a_         235 EIG  237 (271)
T ss_dssp             ECC
T ss_pred             EEC
Confidence            765

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.1e-12  Score=103.14  Aligned_cols=97  Identities=11%  Similarity=0.048  Sum_probs=74.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .++.+|||+|||+|..+..+++.+  .+++++|+ +++++.++++.                 .++.+...|..+   ++
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~---l~  142 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------------PQVTFCVASSHR---LP  142 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTS---CS
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----------------ccccceeeehhh---cc
Confidence            357799999999999999999874  57999999 77888776531                 246777755443   44


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      ..+.+||+|++.....+       ++.+.++|||||.++++.+....
T Consensus       143 ~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~~  182 (268)
T d1p91a_         143 FSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPRH  182 (268)
T ss_dssp             BCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCcc
Confidence            45779999998755443       46788999999999999886544

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.6e-14  Score=110.89  Aligned_cols=126  Identities=16%  Similarity=0.129  Sum_probs=80.6

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHH-HhCCEEEEEcC-cchHHHHHHHHHHhhhhhcc---------CCCCCC--------
Q 028673           60 PSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQ---------MNPGSD--------  120 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl~sl~~a-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~---------~~~~~~--------  120 (205)
                      ....+|.+|||+|||+|+.++..+ +.+.+|+++|+ +.|++.++++++........         ..+...        
T Consensus        50 ~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  129 (263)
T d2g72a1          50 TGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  129 (263)
T ss_dssp             TSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence            456688999999999998876555 55667999999 78999999876532210000         000000        


Q ss_pred             -CCCceEEEEeecCCCCC---cccCCCCccEEEEcccccCC----cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          121 -LLGSIQAVELDWGNEDH---IKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       121 -~~~~i~~~~~dw~~~~~---~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                       ......+...|......   ......+||+|++.-++.+.    ..+..+++.+.++|||||.+++....+.
T Consensus       130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~  202 (263)
T d2g72a1         130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE  202 (263)
T ss_dssp             HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred             hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence             00011222223322221   11224579999999888663    2567889999999999999999876544

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.4e-12  Score=99.91  Aligned_cols=106  Identities=20%  Similarity=0.209  Sum_probs=76.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+|.+|||+|||+|..+..+|+.   ..+|+++|. +++++.+++|++..+.....       ..++.+...|-.   
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~-------~~~~~~~~gD~~---  142 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS-------SGRVQLVVGDGR---  142 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHH-------TSSEEEEESCGG---
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccc-------ccceEEEEeecc---
Confidence            3457889999999999999988876   347999999 88999999999875432110       235666664432   


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .......+||.|+++..+.+.      .+.+.+.|+|||++++...
T Consensus       143 ~~~~~~~~fD~I~~~~~~~~i------p~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         143 MGYAEEAPYDAIHVGAAAPVV------PQALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             GCCGGGCCEEEEEECSBBSSC------CHHHHHTEEEEEEEEEEES
T ss_pred             cccchhhhhhhhhhhcchhhc------CHHHHhhcCCCcEEEEEEc
Confidence            222335689999998766532      2346678999999988643

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.39  E-value=1.1e-12  Score=102.96  Aligned_cols=103  Identities=13%  Similarity=0.056  Sum_probs=79.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      +..+|.+|||+|||+|.+++.+|+.   +.+|+++|. +++++.|++|++..+.           .+++.+...|.... 
T Consensus       100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~-----------~~~v~~~~~d~~~~-  167 (266)
T d1o54a_         100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----------IERVTIKVRDISEG-  167 (266)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----------GGGEEEECCCGGGC-
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-----------ccCcEEEecccccc-
Confidence            4558999999999999999999976   358999999 8899999999998754           24556555332211 


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                         .....||.|+.     +.......++.+.++|||||.+++..+.
T Consensus       168 ---~~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~  206 (266)
T d1o54a_         168 ---FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPT  206 (266)
T ss_dssp             ---CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             ---ccccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCc
Confidence               22456888764     4466778999999999999999876653

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.37  E-value=1.4e-12  Score=98.54  Aligned_cols=104  Identities=15%  Similarity=0.051  Sum_probs=80.5

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +..|||||||+|...+.+|+..  ..++++|+ +.++..+.++++.++.            .|+.+...|...... ...
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l------------~Nv~~~~~Da~~l~~-~~~   96 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------------QNVKLLNIDADTLTD-VFE   96 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------------SSEEEECCCGGGHHH-HCC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc------------cCchhcccchhhhhc-ccC
Confidence            4579999999999999999885  56999999 7899999999888754            578888866543321 124


Q ss_pred             CCCccEEEEcccccCCcC--------hHhHHHHHHHhhCCCcEEEEEE
Q 028673          142 APPFDYIIGTDVVYAEHL--------LEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~--------~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      +..+|.|+..-+..+...        .+.+++.+++.|+|||.++++.
T Consensus        97 ~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1          97 PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             chhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            678998877655544332        2589999999999999999874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.36  E-value=8.5e-13  Score=100.45  Aligned_cols=100  Identities=20%  Similarity=0.270  Sum_probs=78.1

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ...++.+|||+|||||..+..+|+. |.+|+++|. +++++.+++|++..+.            .++.+...|..+.   
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~------------~nv~~~~gd~~~g---  139 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------------KNVHVILGDGSKG---  139 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGC---
T ss_pred             ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC------------ceeEEEECccccC---
Confidence            4557889999999999999999976 777999999 8899999999998764            5788888655433   


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .....+||.|+.+..+..  .++.    +...|++||++++..
T Consensus       140 ~~~~~pfD~Iiv~~a~~~--ip~~----l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         140 FPPKAPYDVIIVTAGAPK--IPEP----LIEQLKIGGKLIIPV  176 (215)
T ss_dssp             CGGGCCEEEEEECSBBSS--CCHH----HHHTEEEEEEEEEEE
T ss_pred             CcccCcceeEEeeccccc--CCHH----HHHhcCCCCEEEEEE
Confidence            233578999999866653  3333    456789999988754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.30  E-value=1.9e-11  Score=92.15  Aligned_cols=104  Identities=18%  Similarity=0.042  Sum_probs=80.3

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +..|||||||+|-..+.+|+..  ..++++|+ +.++..+.+++..++.            .++.+...|..+.... ..
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l------------~Ni~~~~~da~~l~~~-~~   98 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------------PNIKLLWVDGSDLTDY-FE   98 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------------SSEEEEECCSSCGGGT-SC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc------------ccceeeecCHHHHhhh-cc
Confidence            4579999999999999999884  46999999 7789988888887754            5788888776654322 23


Q ss_pred             CCCccEEEEcccccCCc--------ChHhHHHHHHHhhCCCcEEEEEE
Q 028673          142 APPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      ..++|.|+..-+--++.        ..+.+++.+.+.|+|||.++++.
T Consensus        99 ~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1          99 DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             TTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            56899998764433322        13689999999999999998864

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-11  Score=99.33  Aligned_cols=115  Identities=16%  Similarity=0.129  Sum_probs=79.7

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      +..+|.+|||+|||+|.+++.+|+. |  .+|+++|+ +++++.|++|++..+...... ......+++++...|..+..
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~-~~~~~~~nv~~~~~di~~~~  173 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS-HVEEWPDNVDFIHKDISGAT  173 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTT-CSSCCCCCEEEEESCTTCCC
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhh-hhhccccceeEEecchhhcc
Confidence            3457999999999999999999986 4  47999999 889999999998765321100 00123467888886665432


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      . ......||.|+. |+    ..+...+..+.+.|||||.+++-.+
T Consensus       174 ~-~~~~~~fD~V~L-D~----p~P~~~l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         174 E-DIKSLTFDAVAL-DM----LNPHVTLPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             --------EEEEEE-CS----SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             c-ccCCCCcceEee-cC----cCHHHHHHHHHHhccCCCEEEEEeC
Confidence            1 122457999986 43    3344678899999999999877544

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.26  E-value=8.7e-12  Score=95.32  Aligned_cols=106  Identities=15%  Similarity=0.202  Sum_probs=75.4

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh----C----CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEee
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL----G----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD  131 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~----g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~d  131 (205)
                      +..++.+|||+|||||..+..+++.    |    .+|+++|. +++++.+++|+..+......       ..++.+...|
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~-------~~nv~~~~~d  149 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLD-------SGQLLIVEGD  149 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHH-------HTSEEEEESC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcC-------ccEEEEEecc
Confidence            3457889999999999999888875    2    37999999 88999999998665331100       1367777755


Q ss_pred             cCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          132 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       132 w~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      -.+.   .....+||.|+.+..+..  .+    ..+.+.|++||++++...
T Consensus       150 ~~~~---~~~~~~fD~Iiv~~a~~~--~p----~~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         150 GRKG---YPPNAPYNAIHVGAAAPD--TP----TELINQLASGGRLIVPVG  191 (223)
T ss_dssp             GGGC---CGGGCSEEEEEECSCBSS--CC----HHHHHTEEEEEEEEEEES
T ss_pred             cccc---cccccceeeEEEEeechh--ch----HHHHHhcCCCcEEEEEEe
Confidence            4332   223568999999866542  22    345678999999987654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=5.8e-11  Score=97.92  Aligned_cols=117  Identities=17%  Similarity=0.232  Sum_probs=75.7

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEE-EEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-VELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~-~~~dw~~~~  136 (205)
                      ...+|.+|||||||+|-+.+.+|+. |+ +|+|+|+ +.+++.|+++++...........   ....... ...+..+.+
T Consensus       213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~---~~~~~~~~~~~~f~~~~  289 (406)
T d1u2za_         213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGM---RLNNVEFSLKKSFVDNN  289 (406)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB---CCCCEEEEESSCSTTCH
T ss_pred             CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcc---ccccceeeeeechhhcc
Confidence            4557889999999999999988865 54 7999999 88999999998765432110000   0011111 111111111


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .....-...|+|+.+.. .+.......++.+.+.|||||+++.+.
T Consensus       290 ~~d~~~~~adVV~inn~-~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         290 RVAELIPQCDVILVNNF-LFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             HHHHHGGGCSEEEECCT-TCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccccceEEEEecc-cCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            11111235788887654 445667788899999999999988764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.2e-11  Score=95.56  Aligned_cols=115  Identities=11%  Similarity=0.040  Sum_probs=78.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..++.+|||||||+|.+.+.+|+. ++ +++|+|+ +++++.++.+++..........   ....++.+...|..+.. .
T Consensus       149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g---~~~~~i~~~~gd~~~~~-~  224 (328)
T d1nw3a_         149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG---KKHAEYTLERGDFLSEE-W  224 (328)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT---CCCCCEEEEECCTTSHH-H
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc---ccCCceEEEECcccccc-c
Confidence            446789999999999999988875 54 6999999 8899999888765432110000   01346888886655432 1


Q ss_pred             ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .......|+|+++... +.......++.+.+.|||||++++..
T Consensus       225 ~~~~~~advi~~~~~~-f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         225 RERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHHHHHCSEEEECCTT-TCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccCcceEEEEccee-cchHHHHHHHHHHHhCCCCcEEEEec
Confidence            1111235788876544 44566778888889999999998753

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1e-09  Score=89.12  Aligned_cols=142  Identities=13%  Similarity=0.088  Sum_probs=96.6

Q ss_pred             EEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHH
Q 028673           23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLL  101 (205)
Q Consensus        23 ~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~  101 (205)
                      ++++..++++.-.  .-.....|.+++...       ....++.+||||.||+|.+|+.+|+.+.+|+++|. +++++.|
T Consensus       180 ~~~~i~p~sFfQ~--N~~~~e~l~~~v~~~-------~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A  250 (358)
T d1uwva2         180 LRLTFSPRDFIQV--NAGVNQKMVARALEW-------LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG  250 (358)
T ss_dssp             EEEECCSSSCCCS--BHHHHHHHHHHHHHH-------HTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHH
T ss_pred             EEEEECCchhhcc--chhhhhHHHHHHHHh-------hccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHH
Confidence            3444445443222  223455666666554       12335779999999999999999999999999999 8899999


Q ss_pred             HHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          102 KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       102 ~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ++|++.|+.            .++.+...+-.+.. .......+||+|+..++=-  .. ...++.+.+. +|.-.+|++
T Consensus       251 ~~na~~n~i------------~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~--G~-~~~~~~l~~~-~~~~ivYVS  314 (358)
T d1uwva2         251 QQNARLNGL------------QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARA--GA-AGVMQQIIKL-EPIRIVYVS  314 (358)
T ss_dssp             HHHHHHTTC------------CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTT--CC-HHHHHHHHHH-CCSEEEEEE
T ss_pred             HHhHHhccc------------ccceeeecchhhhhhhhhhhhccCceEEeCCCCc--cH-HHHHHHHHHc-CCCEEEEEe
Confidence            999999986            47788775554432 1222356799998865543  23 3567777664 678889998


Q ss_pred             EeeccchhH
Q 028673          181 FSLSMFSLT  189 (205)
Q Consensus       181 ~~~r~~~~~  189 (205)
                      -.......+
T Consensus       315 Cnp~TlaRD  323 (358)
T d1uwva2         315 CNPATLARD  323 (358)
T ss_dssp             SCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            664444333

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.9e-10  Score=87.51  Aligned_cols=105  Identities=15%  Similarity=0.112  Sum_probs=82.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~  138 (205)
                      +.++|||+|||+|..++.+|..   +.+|+.+|. ++..+.+++|++..+.           .+++++...+..+.- ..
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~-----------~~~i~~~~Gda~e~l~~~  127 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----------EHKIDLRLKPALETLDEL  127 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc-----------cceEEEEEeehhhcchhh
Confidence            5689999999999999999975   568999999 8899999999998864           467888875443321 11


Q ss_pred             --ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          139 --KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       139 --~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                        .....+||+|+..   ...+.....++.+.++|+|||.+++-.-
T Consensus       128 ~~~~~~~~fD~ifiD---~dk~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         128 LAAGEAGTFDVAVVD---ADKENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             HHTTCTTCEEEEEEC---SCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             hhhcccCCccEEEEe---CCHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence              1125689999995   5667788888999999999999887654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=2.3e-10  Score=86.70  Aligned_cols=102  Identities=20%  Similarity=0.228  Sum_probs=73.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~  138 (205)
                      +.++|||+|||+|..++.+|+.   +.+|+++|. +++++.++.|++..+.           .+++++...+..+.- .+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl-----------~~~i~l~~Gd~~e~l~~l  124 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL-----------QDKVTILNGASQDLIPQL  124 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHGGGH
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC-----------Cccceeeeccccccccch
Confidence            5679999999999999999974   678999999 8899999999998764           467888886554421 11


Q ss_pred             c--cCCCCccEEEEcccccCCcChHh--HHHHHHHhhCCCcEEEE
Q 028673          139 K--AVAPPFDYIIGTDVVYAEHLLEP--LLQTIFALSGPKTTILV  179 (205)
Q Consensus       139 ~--~~~~~fD~Ii~~d~~y~~~~~~~--ll~~~~~~l~~~g~~~i  179 (205)
                      .  ....+||+|+.-   ...+....  .+....++++|||.+++
T Consensus       125 ~~~~~~~~~D~ifiD---~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         125 KKKYDVDTLDMVFLD---HWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             HHHSCCCCEEEEEEC---SCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             hhcccccccceeeec---ccccccccHHHHHHHhCccCCCcEEEE
Confidence            1  124579999874   33333333  34445567999997554

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.00  E-value=2.4e-09  Score=81.66  Aligned_cols=104  Identities=14%  Similarity=0.019  Sum_probs=82.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~  138 (205)
                      ..++|||+|+++|..++.+|+.   +++|+.+|. ++..+.+++|++..+.           .+++++...+..+.- .+
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~-----------~~~i~~~~g~a~~~L~~l  127 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----------DHKIDFREGPALPVLDEM  127 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc-----------ccceeeeehHHHHHHHHH
Confidence            5689999999999999999964   568999999 8899999999998865           457888885554321 11


Q ss_pred             ---ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 ---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 ---~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                         ....++||+|+.-   .+.......++.+.++++|||.+++-.
T Consensus       128 ~~~~~~~~~fD~iFiD---a~k~~y~~~~e~~~~ll~~gGiii~DN  170 (227)
T d1susa1         128 IKDEKNHGSYDFIFVD---ADKDNYLNYHKRLIDLVKVGGVIGYDN  170 (227)
T ss_dssp             HHCGGGTTCBSEEEEC---SCSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred             HhccccCCceeEEEec---cchhhhHHHHHHHHhhcCCCcEEEEcc
Confidence               1124689999984   466778899999999999999887753

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.87  E-value=4.7e-09  Score=80.91  Aligned_cols=95  Identities=17%  Similarity=0.076  Sum_probs=74.5

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC--CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ..+|||+|||+|..++.++++.  .+++..|+|++++.       .           ...+++++...|.-+.      .
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~-----------~~~~ri~~~~gd~~~~------~  137 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN-------A-----------PPLSGIEHVGGDMFAS------V  137 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT-------C-----------CCCTTEEEEECCTTTC------C
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhc-------c-----------CCCCCeEEecCCcccc------c
Confidence            3689999999999999999884  47999999876431       1           2246789988765432      2


Q ss_pred             CCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      +..|+++.+.++|+...  ...+++.+++.|+|||+++|....
T Consensus       138 p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v  180 (244)
T d1fp1d2         138 PQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  180 (244)
T ss_dssp             CCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence            35699999999988654  448899999999999999999864

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=1e-08  Score=82.03  Aligned_cols=106  Identities=12%  Similarity=0.092  Sum_probs=76.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh----C---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL----G---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~----g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ++.+|||.|||+|.+.+.+...    +   .+++++|+ +.++..++.|+..++.             .......++-..
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~  183 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------------KMTLLHQDGLAN  183 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------------CCEEEESCTTSC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-------------hhhhhccccccc
Confidence            4568999999999888877642    2   25999999 7799999999887753             344444333222


Q ss_pred             CCcccCCCCccEEEEcccccCCc------------------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          136 DHIKAVAPPFDYIIGTDVVYAEH------------------LLEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       136 ~~~~~~~~~fD~Ii~~d~~y~~~------------------~~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                          ....+||+|++++++-...                  ....++..+.++|+|+|++.+..+....
T Consensus       184 ----~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l  248 (328)
T d2f8la1         184 ----LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMF  248 (328)
T ss_dssp             ----CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGG
T ss_pred             ----cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccc
Confidence                2356899999999863211                  1224688888999999999998886543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.2e-08  Score=76.61  Aligned_cols=99  Identities=20%  Similarity=0.318  Sum_probs=73.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+++|+|+|||.|++|+.+|-..  .+|+++|- ..=+..++.-+..-+.            .++++......+..    
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L------------~nv~v~~~R~E~~~----  128 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------------ENIEPVQSRVEEFP----  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------------SSEEEEECCTTTSC----
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC------------cceeeeccchhhhc----
Confidence            46799999999999999999874  47999998 5555555555544432            46788775544432    


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ...+||+|++-    ....++.+++.+..+++++|.+++--.
T Consensus       129 ~~~~fD~V~sR----A~~~~~~ll~~~~~~l~~~g~~~~~KG  166 (207)
T d1jsxa_         129 SEPPFDGVISR----AFASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             CCSCEEEEECS----CSSSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             cccccceehhh----hhcCHHHHHHHHHHhcCCCcEEEEECC
Confidence            24589999874    446788999999999999999776654

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.75  E-value=1.2e-08  Score=78.48  Aligned_cols=94  Identities=13%  Similarity=0.086  Sum_probs=73.2

Q ss_pred             CeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           66 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      ++|||+|||+|..++.++++  +.+++..|.|++++.+                  ...+++++...|.-+.      .+
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~------------------~~~~rv~~~~gD~f~~------~p  137 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL------------------SGSNNLTYVGGDMFTS------IP  137 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTC------------------CCBTTEEEEECCTTTC------CC
T ss_pred             eEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhC------------------cccCceEEEecCcccC------CC
Confidence            67999999999999999988  4579999998765422                  1236789988665432      23


Q ss_pred             CccEEEEcccccCCcCh--HhHHHHHHHhhCCC---cEEEEEEee
Q 028673          144 PFDYIIGTDVVYAEHLL--EPLLQTIFALSGPK---TTILVMFSL  183 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~---g~~~i~~~~  183 (205)
                      .+|+++...++++..+-  ..+++.+++.|+||   |++++....
T Consensus       138 ~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~  182 (244)
T d1fp2a2         138 NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  182 (244)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             CCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence            68999999999886554  47899999999998   778887653

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.67  E-value=6e-08  Score=74.47  Aligned_cols=95  Identities=14%  Similarity=0.049  Sum_probs=71.9

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      .++|||+|||+|..++.++++  +.+++..|+|++++.+                  ...+++.+...|+.+..      
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~------------------~~~~r~~~~~~d~~~~~------  137 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA------------------PSYPGVEHVGGDMFVSI------  137 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTC------------------CCCTTEEEEECCTTTCC------
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhc------------------ccCCceEEecccccccC------
Confidence            468999999999999999988  4579999998765321                  12357888887765431      


Q ss_pred             CCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          143 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      +..|+++...++++..  ....+++.+++.|+|||++++....
T Consensus       138 P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~  180 (243)
T d1kyza2         138 PKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI  180 (243)
T ss_dssp             CCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred             CCcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence            2457777777887654  4558999999999999999998654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.63  E-value=8e-08  Score=73.38  Aligned_cols=78  Identities=13%  Similarity=0.091  Sum_probs=56.0

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ...++.+|||+|||+|.++..+++.+++|+++|+ +.+++.++++...+              +++.+...|.-+.+.  
T Consensus        18 ~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~--------------~n~~i~~~D~l~~~~--   81 (235)
T d1qama_          18 RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH--------------DNFQVLNKDILQFKF--   81 (235)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC--------------CSEEEECCCGGGCCC--
T ss_pred             CCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc--------------cchhhhhhhhhhccc--
Confidence            3447889999999999999999999999999999 67888877754332              468888866654431  


Q ss_pred             cCCCCccEEEEcccccC
Q 028673          140 AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~  156 (205)
                       .......|++| .-|+
T Consensus        82 -~~~~~~~vv~N-LPYn   96 (235)
T d1qama_          82 -PKNQSYKIFGN-IPYN   96 (235)
T ss_dssp             -CSSCCCEEEEE-CCGG
T ss_pred             -cccccceeeee-ehhh
Confidence             12233456665 4453

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.63  E-value=1.4e-08  Score=75.37  Aligned_cols=106  Identities=19%  Similarity=0.242  Sum_probs=75.9

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..++..+||.+||+|-.+..+++.  +.+|+++|. ++|++.++++++...             .++.+...+..+....
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-------------~r~~~~~~~f~~~~~~   87 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-------------DRVSLFKVSYREADFL   87 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-------------TTEEEEECCGGGHHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-------------ccccchhHHHhhHHHH
Confidence            346789999999999998888876  568999999 889999999877652             4677777655443211


Q ss_pred             --ccCCCCccEEEEcccccC----------CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          139 --KAVAPPFDYIIGTDVVYA----------EHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       139 --~~~~~~fD~Ii~~d~~y~----------~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        .....+||.|+. |.-+.          .......+.....+|+|||.+.+..
T Consensus        88 ~~~~~~~~vdgIl~-DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          88 LKTLGIEKVDGILM-DLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             HHHTTCSCEEEEEE-ECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             HHHcCCCCcceeee-ccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence              112468998876 32221          2334567777888899999987654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.60  E-value=7.5e-08  Score=73.53  Aligned_cols=104  Identities=14%  Similarity=0.148  Sum_probs=71.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      .+.+++|+|+|.|++|+.+|-.  ..+|+++|- ..=+..++.-++.-++            .++.+......+......
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L------------~n~~i~~~R~E~~~~~~~  137 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------------ENTTFCHDRAETFGQRKD  137 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEESCHHHHTTCTT
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC------------CCcEEEeehhhhcccccc
Confidence            4578999999999999999975  457999998 4433444443333322            356666643332221122


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...+||+|++-    ....+..+++.+..+++++|.+++.-..
T Consensus       138 ~~~~~D~v~sR----Ava~l~~ll~~~~~~l~~~g~~i~~KG~  176 (239)
T d1xdza_         138 VRESYDIVTAR----AVARLSVLSELCLPLVKKNGLFVALKAA  176 (239)
T ss_dssp             TTTCEEEEEEE----CCSCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred             ccccceEEEEh----hhhCHHHHHHHHhhhcccCCEEEEECCC
Confidence            34689999984    5578899999999999999987665544

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.56  E-value=7.5e-08  Score=71.36  Aligned_cols=116  Identities=19%  Similarity=0.191  Sum_probs=67.3

Q ss_pred             CCeEEEeCCCccH--HHHH--HHHh----C--CEEEEEcC-cchHHHHHHHHHHhhhh-----------hccCCCCC---
Q 028673           65 GKRVIELGAGCGV--AGFG--MALL----G--CNVITTDQ-IEVLPLLKRNVEWNTSR-----------ISQMNPGS---  119 (205)
Q Consensus        65 ~~~VLdlGcGtGl--~sl~--~a~~----g--~~v~~~D~-~~~l~~~~~n~~~n~~~-----------~~~~~~~~---  119 (205)
                      ..+|++.|||||-  .+++  +...    +  .+|++||+ +.+++.|+...-.....           ........   
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~  104 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  104 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence            4589999999994  3343  3322    1  25999999 77888877433111000           00000000   


Q ss_pred             -----CCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          120 -----DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       120 -----~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                           .....+.+...+....  .....++||+|+|-.++.+  .+....+++.+++.|+|||.+++...
T Consensus       105 ~~~~~~~~~~v~~~~~~~~~~--~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         105 VRVRQELANYVEFSSVNLLEK--QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             EEECHHHHTTEEEEECCTTCS--SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             eehHHHHHHHHHHhhhhcccc--ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence                 0011122333222211  1123468999999998854  34557899999999999999888754

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=6.9e-07  Score=69.62  Aligned_cols=89  Identities=17%  Similarity=0.209  Sum_probs=65.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++..|||+|+|+|.++..+++.+++|+++++ +.+++.+++.+..+.           ...++++...|+-..+    
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~-----------~~~~~~~i~~D~l~~~----   83 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTP-----------VASKLQVLVGDVLKTD----   83 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTST-----------TGGGEEEEESCTTTSC----
T ss_pred             CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhc-----------cccchhhhHHHHhhhh----
Confidence            346789999999999999999999999999999 778888888776542           1357888887776553    


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHH
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFA  169 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~  169 (205)
                       .+.++.|++|-++|   --.+++..+..
T Consensus        84 -~~~~~~vV~NLPY~---Iss~il~~~~~  108 (278)
T d1zq9a1          84 -LPFFDTCVANLPYQ---ISSPFVFKLLL  108 (278)
T ss_dssp             -CCCCSEEEEECCGG---GHHHHHHHHHH
T ss_pred             -hhhhhhhhcchHHH---HHHHHHHHHHh
Confidence             23567788875554   23344444433

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.50  E-value=1.6e-07  Score=76.36  Aligned_cols=113  Identities=19%  Similarity=0.117  Sum_probs=77.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCC---CCCCCCceEEEEeecCCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNP---GSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~---~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ++++|||..||||+-|+..|+ .|+ +|++.|+ +++++.+++|++.|+..-.....   .......+.+...|+...  
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~--  122 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL--  122 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH--
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh--
Confidence            578999999999999997776 455 5999999 88999999999999752100000   000112234444333211  


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .......||+|.. |+ |  ....+++....+.++.||.+.++..
T Consensus       123 ~~~~~~~fDvIDi-DP-f--Gs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         123 MAERHRYFHFIDL-DP-F--GSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HHHSTTCEEEEEE-CC-S--SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hHhhcCcCCcccC-CC-C--CCcHHHHHHHHHHhccCCEEEEEec
Confidence            1122457998888 44 4  4557899999999999999999854

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.45  E-value=1.8e-07  Score=74.30  Aligned_cols=110  Identities=17%  Similarity=0.045  Sum_probs=76.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++||.||.|.|.....+.+..  .+|+++|+ +++++.+++.+.......       ...+++++...|+.+.-  ..
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~-------~~d~rv~i~~~Da~~~l--~~  147 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGA-------FDDPRAVLVIDDARAYL--ER  147 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTG-------GGCTTEEEEESCHHHHH--HH
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCc-------cCCCceEEEEchHHHHh--hh
Confidence            45799999999998888877653  47999999 889999998875421100       12357888876665432  22


Q ss_pred             CCCCccEEEE--cccccCCc-----ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIG--TDVVYAEH-----LLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~--~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ...+||+|+.  .|+.....     .-.++++.+++.|+|||.+++-..
T Consensus       148 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence            3568999995  23332211     125789999999999998877544

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.44  E-value=2.1e-07  Score=69.65  Aligned_cols=111  Identities=15%  Similarity=0.169  Sum_probs=70.7

Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC
Q 028673           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (205)
Q Consensus        44 ~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (205)
                      -++++|....       ...++.+|||.|||+|.+...+...   ...++++|+ +.++..++                 
T Consensus         6 ~i~~~m~~l~-------~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~-----------------   61 (223)
T d2ih2a1           6 EVVDFMVSLA-------EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP-----------------   61 (223)
T ss_dssp             HHHHHHHHHC-------CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT-----------------
T ss_pred             HHHHHHHHhc-------CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc-----------------
Confidence            3566666542       2346789999999999776666543   346999999 55433221                 


Q ss_pred             CCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc-----------------------------ChHhHHHHHHHh
Q 028673          120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----------------------------LLEPLLQTIFAL  170 (205)
Q Consensus       120 ~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~-----------------------------~~~~ll~~~~~~  170 (205)
                          ...+...++....    ....||+|+++++.-...                             ....++....++
T Consensus        62 ----~~~~~~~~~~~~~----~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~  133 (223)
T d2ih2a1          62 ----WAEGILADFLLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRL  133 (223)
T ss_dssp             ----TEEEEESCGGGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHH
T ss_pred             ----cceeeeeehhccc----cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHh
Confidence                2244444433322    246899999988753211                             123456677788


Q ss_pred             hCCCcEEEEEEeeccc
Q 028673          171 SGPKTTILVMFSLSMF  186 (205)
Q Consensus       171 l~~~g~~~i~~~~r~~  186 (205)
                      |++||.+.+..+....
T Consensus       134 lk~~G~~~~I~p~~~l  149 (223)
T d2ih2a1         134 LKPGGVLVFVVPATWL  149 (223)
T ss_dssp             EEEEEEEEEEEEGGGG
T ss_pred             cccCCceEEEEeeeec
Confidence            9999999888875443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.44  E-value=1.5e-07  Score=73.48  Aligned_cols=117  Identities=16%  Similarity=0.082  Sum_probs=76.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      +.++||-||+|.|.....+.+... +|+++|+ +++++.+++-+..+........  ....+++++...|....-   ..
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~--~~~d~rv~i~~~Da~~~l---~~  146 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAML--NGKHEKAKLTIGDGFEFI---KN  146 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHH--TTCCSSEEEEESCHHHHH---HH
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhh--ccCCCCceEEEChHHHHH---hc
Confidence            457999999999988887777654 6999999 8899999876543321100000  012457888775543221   12


Q ss_pred             CCCccEEEEcccccCCcC-----hHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          142 APPFDYIIGTDVVYAEHL-----LEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~~~~-----~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      .++||+|+. |+......     -.++++.+++.|+|+|.+++-......
T Consensus       147 ~~~yDvIi~-D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~  195 (276)
T d1mjfa_         147 NRGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYL  195 (276)
T ss_dssp             CCCEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTT
T ss_pred             cCCCCEEEE-eCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcch
Confidence            568999986 44432222     247899999999999998776544433

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.43  E-value=1.8e-08  Score=77.50  Aligned_cols=77  Identities=16%  Similarity=0.129  Sum_probs=55.3

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.++.+...              .+++.+...|..+.+   .
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~--------------~~n~~ii~~D~l~~~---~   89 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL--------------NTRVTLIHQDILQFQ---F   89 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT--------------CSEEEECCSCCTTTT---C
T ss_pred             CCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh--------------ccchhhhhhhhhccc---c
Confidence            346779999999999999999999999999999 6677766554322              246778776665543   2


Q ss_pred             CCCCccEEEEcccccC
Q 028673          141 VAPPFDYIIGTDVVYA  156 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~  156 (205)
                      ....++.|++|-+ |+
T Consensus        90 ~~~~~~~vv~NLP-Y~  104 (245)
T d1yuba_          90 PNKQRYKIVGNIP-YH  104 (245)
T ss_dssp             CCSSEEEEEEECC-SS
T ss_pred             ccceeeeEeeeee-hh
Confidence            2345666777654 54

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.18  E-value=3.9e-06  Score=69.10  Aligned_cols=108  Identities=14%  Similarity=0.024  Sum_probs=76.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---------------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEE
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA  127 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~  127 (205)
                      .+.+|+|-.||+|.+-+.+.++               ...+.++|+ +.+...++.|+..++..          ......
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~----------~~~~~i  231 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----------TDRSPI  231 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----------SSCCSE
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc----------ccccee
Confidence            5679999999999887777653               124899999 78999999998887642          122333


Q ss_pred             EEeecCCCCCcccCCCCccEEEEcccccCCc-----------------ChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          128 VELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----------------LLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       128 ~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~-----------------~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      ...+.-..    ....+||+|++++++-...                 ....++..+.++|++||++.++.+...
T Consensus       232 ~~~d~l~~----~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~  302 (425)
T d2okca1         232 VCEDSLEK----EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNV  302 (425)
T ss_dssp             EECCTTTS----CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH
T ss_pred             ecCchhhh----hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHH
Confidence            34332222    2346899999999883211                 123588888999999999999888543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.16  E-value=1.8e-06  Score=67.71  Aligned_cols=110  Identities=15%  Similarity=0.092  Sum_probs=77.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++||-||.|.|...-.+.+..  .+|+++|+ +++++.+++.+..+....        ..+++++...|....  +..
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~--------~d~rv~v~~~Da~~~--l~~  158 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF--------DDPRAEIVIANGAEY--VRK  158 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHH--GGG
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccc--------cCCCcEEEhhhHHHH--Hhc
Confidence            35799999999998888887763  47999999 889999998877654321        135788877555432  223


Q ss_pred             CCCCccEEEEcccccC---C--c-ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          141 VAPPFDYIIGTDVVYA---E--H-LLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~---~--~-~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ...+||+|+. |+.-.   .  . .-.++++.+++.|+|+|.+++-....
T Consensus       159 ~~~~yDvIi~-D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         159 FKNEFDVIII-DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             CSSCEEEEEE-EC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCCCCEEEE-cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence            3568999996 33221   1  1 13589999999999999987655443

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.6e-06  Score=66.55  Aligned_cols=113  Identities=14%  Similarity=0.018  Sum_probs=77.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++||-||-|.|...-.+.+.  ..+|+++|+ +++++.+++-+..+....        ..+++++...|....  +..
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~--------~d~rv~i~~~Da~~~--l~~  147 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY--------SSSKLTLHVGDGFEF--MKQ  147 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHH--HHT
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcccc--------CCCCceEEEccHHHH--Hhc
Confidence            4579999999999888888876  347999999 889999998876653211        135788877554322  112


Q ss_pred             CCCCccEEEEcccccCCcC-----hHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          141 VAPPFDYIIGTDVVYAEHL-----LEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~-----~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      ...+||+|+. |+.-....     -..+++.+++.|+|+|.+++-.......
T Consensus       148 ~~~~yDvIi~-D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~  198 (285)
T d2o07a1         148 NQDAFDVIIT-DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH  198 (285)
T ss_dssp             CSSCEEEEEE-ECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTC
T ss_pred             CCCCCCEEEE-cCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhh
Confidence            3568999997 44322111     1267899999999999988776554443

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=4.8e-06  Score=64.63  Aligned_cols=109  Identities=11%  Similarity=-0.032  Sum_probs=76.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++||-+|-|.|...-.+.+. + .+|+++|+ +++++.+++.+..+...        ...+++++...|....  +..
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~--------~~d~r~~i~~~D~~~~--l~~  144 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK--------LDDPRVDVQVDDGFMH--IAK  144 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT--------TTSTTEEEEESCSHHH--HHT
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccc--------ccCCCeEEEechHHHH--Hhh
Confidence            4579999999999998888876 3 47999999 88999999987665421        1235777777443221  122


Q ss_pred             CCCCccEEEEcccccC---Cc--ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDVVYA---EH--LLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~---~~--~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ...+||+|+.- +.-.   ..  .-.++.+.+++.|+|+|.++.-...
T Consensus       145 ~~~~yDvIi~D-~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         145 SENQYDVIMVD-STEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             CCSCEEEEEES-CSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             cCCCCCEEEEc-CCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            35689999873 2211   11  1447899999999999998875543

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.2e-06  Score=67.36  Aligned_cols=59  Identities=12%  Similarity=0.059  Sum_probs=46.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      .++..|||+|||+|.++..+++.+.+|+++|+ +.+++.++.....+              +++.+...|.-+.
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~--------------~~~~ii~~D~l~~   79 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG--------------PKLTIYQQDAMTF   79 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTG--------------GGEEEECSCGGGC
T ss_pred             CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhc--------------cchhHHhhhhhhh
Confidence            36789999999999999999999999999999 67778777643222              4678877665544

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.99  E-value=2.9e-06  Score=66.94  Aligned_cols=110  Identities=15%  Similarity=-0.007  Sum_probs=73.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ..++||-||.|.|...-.+.+..  .+|+++|+ +++++.+++.+..+....        ..+++++...|....  +..
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~--------~dprv~i~i~Da~~~--l~~  175 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF--------SHPKLDLFCGDGFEF--LKN  175 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG--------GCTTEEEECSCHHHH--HHH
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcccc--------CCCCeEEEEchHHHH--HHh
Confidence            35789999999999888888764  47999999 889999998765543211        135677766443322  122


Q ss_pred             CCCCccEEEEcccccCCc-----ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673          141 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILVMFSLS  184 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~i~~~~r  184 (205)
                      ...+||+|+. |+.-...     .-..+++.+++.|+|+|.++.-....
T Consensus       176 ~~~~yDvII~-D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         176 HKNEFDVIIT-DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             CTTCEEEEEE-CCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCCCCEEEE-cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence            3568999997 3322111     12467889999999999988765433

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=0.00011  Score=57.26  Aligned_cols=76  Identities=17%  Similarity=0.120  Sum_probs=56.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      +|.+|||++||.|-=++.+|.+   ..+|+++|. +.=++.+++|+++.+.            .++.+...|........
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~------------~~~~~~~~d~~~~~~~~  161 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------------SCCELAEEDFLAVSPSD  161 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCGGGSCTTC
T ss_pred             ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc------------cceeeeehhhhhhcccc
Confidence            6889999999999877777754   457999999 6678999999998865            45777665554443222


Q ss_pred             cCCCCccEEEEc
Q 028673          140 AVAPPFDYIIGT  151 (205)
Q Consensus       140 ~~~~~fD~Ii~~  151 (205)
                      ....+||.|+.-
T Consensus       162 ~~~~~fD~VL~D  173 (293)
T d2b9ea1         162 PRYHEVHYILLD  173 (293)
T ss_dssp             GGGTTEEEEEEC
T ss_pred             cccceeeEEeec
Confidence            223579999874

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.96  E-value=8.6e-06  Score=63.68  Aligned_cols=114  Identities=15%  Similarity=0.026  Sum_probs=78.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      +-++||-||-|.|...-.+.+. . .+|+++|+ +++++.+++.+..+....        ..+++++...|....-. ..
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~--------~~~r~~i~~~Da~~~l~-~~  150 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY--------EDPRVNLVIGDGVAFLK-NA  150 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--------GSTTEEEEESCHHHHHH-TS
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccc--------cCCCcEEEEccHHHHHh-hc
Confidence            3479999999999988888876 3 46999999 889999998876543211        13567777754332210 11


Q ss_pred             CCCCccEEEEcccccCCc-----ChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673          141 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILVMFSLSMFS  187 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~i~~~~r~~~  187 (205)
                      ..++||+|+. |+.-...     .-.++++.+++.|+|+|.+++-.......
T Consensus       151 ~~~~yDvIi~-D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~  201 (290)
T d1xj5a_         151 AEGSYDAVIV-DSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLH  201 (290)
T ss_dssp             CTTCEEEEEE-CCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTC
T ss_pred             cccCccEEEE-cCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHH
Confidence            2358999997 4332111     12468999999999999988876554433

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.84  E-value=0.00012  Score=57.50  Aligned_cols=104  Identities=17%  Similarity=0.088  Sum_probs=68.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      +|.+|||++||.|-=+..++..   ...+++.|. +.-+..++.|+++.+.            .++.+..   .+.....
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------------~~i~~~~---~d~~~~~  180 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------------LNVILFH---SSSLHIG  180 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------------CSEEEES---SCGGGGG
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------------hcccccc---ccccccc
Confidence            6889999999999877777754   346999999 6778888899888754            2344333   2222223


Q ss_pred             cCCCCccEEEEcccc-c-----C-C---------------cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVV-Y-----A-E---------------HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~-y-----~-~---------------~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .....||.|+.-.+. -     . +               .....++....++++|||.++.+.-
T Consensus       181 ~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC  245 (313)
T d1ixka_         181 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  245 (313)
T ss_dssp             GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence            345689999762221 1     1 0               0122567777788999998777654

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.81  E-value=3.4e-05  Score=58.74  Aligned_cols=86  Identities=19%  Similarity=0.244  Sum_probs=57.4

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      .+|||+-||.|.-++.+|..|++|+++|. +.+..+++.++++........   .....++++...|-.+.  +.....+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~---~~~~~ri~li~~Ds~~~--L~~~~~~  164 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIG---GWLQERLQLIHASSLTA--LTDITPR  164 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTH---HHHHHHEEEEESCHHHH--STTCSSC
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhH---HHHhhhheeecCcHHHH--HhccCCC
Confidence            48999999999999999999999999999 667677777765543200000   00013577777443221  1223457


Q ss_pred             ccEEEEcccccCC
Q 028673          145 FDYIIGTDVVYAE  157 (205)
Q Consensus       145 fD~Ii~~d~~y~~  157 (205)
                      ||+|+. |+.|..
T Consensus       165 ~DvIYl-DPMFp~  176 (250)
T d2oyra1         165 PQVVYL-DPMFPH  176 (250)
T ss_dssp             CSEEEE-CCCCCC
T ss_pred             CCEEEE-CCCCcc
Confidence            999998 788763

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=8.9e-05  Score=53.67  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=63.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc--
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI--  138 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~--  138 (205)
                      ++.+||||||+.|-.+..+++. +  .+|+++|+..+-                      ..+.+.+...+..+....  
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~----------------------~i~~~~~~~~d~~~~~~~~~   79 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----------------------PIVGVDFLQGDFRDELVMKA   79 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----------------------CCTTEEEEESCTTSHHHHHH
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc----------------------ccCCceEeecccccchhhhh
Confidence            5779999999999999998865 3  469999983321                      013456667555543211  


Q ss_pred             ---ccCCCCccEEEEcccccCCcC-----------hHhHHHHHHHhhCCCcEEEEEEee
Q 028673          139 ---KAVAPPFDYIIGTDVVYAEHL-----------LEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       139 ---~~~~~~fD~Ii~~d~~y~~~~-----------~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                         .....++|+|++-...--...           ....+..+.+.|++||.+++-.-.
T Consensus        80 ~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~  138 (180)
T d1ej0a_          80 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             hhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence               113468999988543322221           224455566779999998887643

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.73  E-value=0.00011  Score=55.31  Aligned_cols=101  Identities=14%  Similarity=0.089  Sum_probs=61.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      +.++|||+|++.|.-++.++..      .++|+++|+ +.......                 ....++++...|..+..
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----------------~~~~~I~~i~gDs~~~~  142 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----------------SDMENITLHQGDCSDLT  142 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----------------GGCTTEEEEECCSSCSG
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----------------ccccceeeeecccccHH
Confidence            6789999999999766666532      357999999 54221110                 11357888887766554


Q ss_pred             Cccc-CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          137 HIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       137 ~~~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      .... ....+|+|+.-+ -+.....-.-+ .+..++++||.+++-+..
T Consensus       143 ~~~~l~~~~~dlIfID~-~H~~~~v~~~~-~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         143 TFEHLREMAHPLIFIDN-AHANTFNIMKW-AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             GGGGGSSSCSSEEEEES-SCSSHHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred             HHHHHHhcCCCEEEEcC-CcchHHHHHHH-HHhcccCcCCEEEEEcCC
Confidence            3322 234678776633 23222111112 345789999999988764

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=2.7e-05  Score=65.67  Aligned_cols=125  Identities=11%  Similarity=-0.083  Sum_probs=78.9

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--------------------CCEEEEEcC-cchHHHH
Q 028673           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--------------------GCNVITTDQ-IEVLPLL  101 (205)
Q Consensus        43 ~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--------------------g~~v~~~D~-~~~l~~~  101 (205)
                      ..++++|..-.       ....+.+|+|-.||||-+-+.+.++                    ...+++.|+ +.+...+
T Consensus       150 ~~Iv~~mv~ll-------~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la  222 (524)
T d2ar0a1         150 RPLIKTIIHLL-------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  222 (524)
T ss_dssp             HHHHHHHHHHH-------CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             cchhHhhhhcc-------cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence            34556665531       2335679999999999777766542                    124899999 7889999


Q ss_pred             HHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-ccCCCCccEEEEcccccCCc--------------ChHhHHHH
Q 028673          102 KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAEH--------------LLEPLLQT  166 (205)
Q Consensus       102 ~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-~~~~~~fD~Ii~~d~~y~~~--------------~~~~ll~~  166 (205)
                      +.|+-.++.....       ...-...   .++.... .....+||+|++|+++-...              ..-.++..
T Consensus       223 ~~nl~l~~~~~~i-------~~~~~~~---~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~  292 (524)
T d2ar0a1         223 LMNCLLHDIEGNL-------DHGGAIR---LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH  292 (524)
T ss_dssp             HHHHHTTTCCCBG-------GGTBSEE---ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH
T ss_pred             HHHHHhhcccccc-------cccchhh---hhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHH
Confidence            9998877531100       0000111   1221110 11245899999999884321              12248888


Q ss_pred             HHHhhCCCcEEEEEEeec
Q 028673          167 IFALSGPKTTILVMFSLS  184 (205)
Q Consensus       167 ~~~~l~~~g~~~i~~~~r  184 (205)
                      +.+.|++||++.++.+..
T Consensus       293 ~l~~Lk~gGr~aiIlP~~  310 (524)
T d2ar0a1         293 IIETLHPGGRAAVVVPDN  310 (524)
T ss_dssp             HHHHEEEEEEEEEEEEHH
T ss_pred             HHHhccccCcEEEEEehH
Confidence            899999999999988854

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=8.3e-05  Score=57.71  Aligned_cols=106  Identities=13%  Similarity=0.061  Sum_probs=69.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      +|.+|||++||.|-=++.++..+  .+|+++|. +.=+..++.|+++.+.            .++.+...+..  .....
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~------------~~~~~~~~~~~--~~~~~  167 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM------------KATVKQGDGRY--PSQWC  167 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC------------CCEEEECCTTC--THHHH
T ss_pred             ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc------------cceeeeccccc--cchhc
Confidence            68899999999998888887764  46999999 6778899999988864            22333222111  11112


Q ss_pred             CCCCccEEEEccc------ccCCcC----------------hHhHHHHHHHhhCCCcEEEEEEee
Q 028673          141 VAPPFDYIIGTDV------VYAEHL----------------LEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       141 ~~~~fD~Ii~~d~------~y~~~~----------------~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ....||.|+.-.+      +.....                -..++....++++|||.++.+.-.
T Consensus       168 ~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS  232 (284)
T d1sqga2         168 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS  232 (284)
T ss_dssp             TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence            3457999976322      211111                225677777789999987777653

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.59  E-value=2.8e-05  Score=56.54  Aligned_cols=103  Identities=18%  Similarity=0.173  Sum_probs=70.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc--
Q 028673           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--  139 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~--  139 (205)
                      .+|..++|..+|.|-.+..+...+.+|+++|. +++++.++..   .             ..++.+......+.....  
T Consensus        17 ~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~---~-------------~~~~~~~~~~f~~~~~~l~~   80 (182)
T d1wg8a2          17 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL---H-------------LPGLTVVQGNFRHLKRHLAA   80 (182)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT---C-------------CTTEEEEESCGGGHHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc---c-------------ccceeEeehHHHHHHHHHHH
Confidence            47889999999999888888888889999999 8888776642   1             235677775555433221  


Q ss_pred             cCCCCccEEEEcccccCC----------cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAE----------HLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~----------~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ....++|.|+. |.-+..          +.....+.....++++||.+.+..-
T Consensus        81 ~~~~~vdgIl~-DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          81 LGVERVDGILA-DLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             TTCSCEEEEEE-ECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCCccCEEEE-EccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            12357898877 433321          1233467777788999999776654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.55  E-value=0.00015  Score=54.74  Aligned_cols=118  Identities=15%  Similarity=0.062  Sum_probs=67.7

Q ss_pred             cccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cch--HHHHHHHHHHhh
Q 028673           35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEV--LPLLKRNVEWNT  109 (205)
Q Consensus        35 g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~--l~~~~~n~~~n~  109 (205)
                      |..+-+++.-|.+.....        ...++.+|+|||||.|-.+..++.+.  ..|.++|+ -+.  .+....   .++
T Consensus        45 ~~~~SR~~~Kl~~~~~~~--------~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~---~~~  113 (257)
T d2p41a1          45 HHAVSRGSAKLRWFVERN--------LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMS---TYG  113 (257)
T ss_dssp             SCCSSTHHHHHHHHHHTT--------SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCC---STT
T ss_pred             CCCcchHHHHHHHHHHhc--------CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCcccc---ccc
Confidence            445667788886655442        23355689999999999999999764  45777776 220  010000   000


Q ss_pred             hhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcCh-------HhHHHHHHHhhCCCcEEEEE
Q 028673          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL-------EPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~-------~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .            +-+....   +.. -......+.|+|+| |+--+....       -.+++.+.+.|+|||.+++-
T Consensus       114 ~------------ni~~~~~---~~d-v~~l~~~~~D~vlc-Dm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         114 W------------NLVRLQS---GVD-VFFIPPERCDTLLC-DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             G------------GGEEEEC---SCC-TTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             c------------ccccchh---hhh-HHhcCCCcCCEEEe-eCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            0            1112211   111 12223578999988 443332221       15677778889999976654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.27  E-value=0.00081  Score=47.49  Aligned_cols=97  Identities=20%  Similarity=0.190  Sum_probs=60.3

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-  137 (205)
                      ..+|.+||=+|||. |++.+.+++. |++|+++|. ++-++.+++    .+.             ...+ ..+-...+. 
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~----~ga-------------~~~~-~~~~~~~~~~   85 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGA-------------DVTL-VVDPAKEEES   85 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC-------------SEEE-ECCTTTSCHH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH----cCC-------------cEEE-eccccccccc
Confidence            34678999999985 8887777764 889999999 565555554    221             1111 111011110 


Q ss_pred             -----c-ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          138 -----I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       138 -----~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                           . ......+|+|+-+      ...+..++...++++++|++++.-.
T Consensus        86 ~~~~~~~~~~g~g~D~vid~------~g~~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          86 SIIERIRSAIGDLPNVTIDC------SGNEKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             HHHHHHHHHSSSCCSEEEEC------SCCHHHHHHHHHHSCTTCEEEECSC
T ss_pred             hhhhhhhcccccCCceeeec------CCChHHHHHHHHHHhcCCceEEEec
Confidence                 0 0113468888765      3345677888889999999887754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=0.00063  Score=48.16  Aligned_cols=95  Identities=15%  Similarity=0.084  Sum_probs=57.9

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-CC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~~  137 (205)
                      ..+|.+||-+|||. |++++.+++ .|++|+++|. ++-++.+++    .+.             . .+.  +..+. +.
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~----lGa-------------~-~~i--~~~~~~~~   84 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGA-------------D-HYI--ATLEEGDW   84 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTC-------------S-EEE--EGGGTSCH
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc----cCC-------------c-EEe--eccchHHH
Confidence            44788999999984 888887775 5999999998 666666654    232             0 111  11111 11


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .......||+|+.....-...    .+....++++++|++++.
T Consensus        85 ~~~~~~~~d~vi~~~~~~~~~----~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          85 GEKYFDTFDLIVVCASSLTDI----DFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             HHHSCSCEEEEEECCSCSTTC----CTTTGGGGEEEEEEEEEC
T ss_pred             HHhhhcccceEEEEecCCccc----hHHHHHHHhhccceEEEe
Confidence            122345799887642211111    133456778899988776

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.19  E-value=0.0002  Score=50.89  Aligned_cols=97  Identities=23%  Similarity=0.300  Sum_probs=65.3

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .+..+|+=||+|. |+-++..|+ .|++|++.|. ++.++.++.....+                ++...   .+.+.+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~----------------~~~~~---~~~~~l~   90 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR----------------VELLY---SNSAEIE   90 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG----------------SEEEE---CCHHHHH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc----------------ceeeh---hhhhhHH
Confidence            4567999999996 888888775 5999999999 67776665543322                33322   2222122


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                      ..-...|+||++-.+--...+.-+-+...+.+|||..++
T Consensus        91 ~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1          91 TAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             HHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             HhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence            223478999998666555555566677778889888754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0026  Score=44.85  Aligned_cols=97  Identities=19%  Similarity=0.145  Sum_probs=61.4

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||=+|||. |++.+.+++. |+ +|+++|. ++-++.+++    .+.              -.+...+-.+..+
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga--------------~~~~~~~~~~~~~   85 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGA--------------DLVLQISKESPQE   85 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC--------------SEEEECSSCCHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCC--------------ccccccccccccc
Confidence            34678999999986 7777777764 87 6999999 665555543    232              1122211111110


Q ss_pred             c-----ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          138 I-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       138 ~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .     ......+|+|+-+      ...+..++...++++++|++++.-.
T Consensus        86 ~~~~~~~~~g~g~Dvvid~------~G~~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          86 IARKVEGQLGCKPEVTIEC------TGAEASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HHHHHHHHHTSCCSEEEEC------SCCHHHHHHHHHHSCTTCEEEECSC
T ss_pred             ccccccccCCCCceEEEec------cCCchhHHHHHHHhcCCCEEEEEec
Confidence            0     0123578988775      3446788888999999999887754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.0015  Score=46.66  Aligned_cols=93  Identities=23%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-  136 (205)
                      ..+|.+||=+|||. |+..+.+++. |+ +|+++|. ++-++.+++    .+.              -.+..  -.+.. 
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa--------------~~vi~--~~~~~~   85 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGA--------------DLTLN--RRETSV   85 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTC--------------SEEEE--TTTSCH
T ss_pred             CCCCCEEEEECCCccchhheeccccccccccccccccccccccccc----ccc--------------eEEEe--ccccch
Confidence            34688999999985 8888877765 77 6999999 666666553    221              01111  11111 


Q ss_pred             -C----cc--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          137 -H----IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       137 -~----~~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                       +    ..  .....+|+|+-+  .-    .+..++...++++++|++++.
T Consensus        86 ~~~~~~i~~~~~~~g~Dvvid~--vG----~~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          86 EERRKAIMDITHGRGADFILEA--TG----DSRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             HHHHHHHHHHTTTSCEEEEEEC--SS----CTTHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHHHhhCCCCceEEeec--CC----chhHHHHHHHHhcCCCEEEEE
Confidence             0    00  113458988854  22    245667777889999998765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0013  Score=46.46  Aligned_cols=95  Identities=24%  Similarity=0.265  Sum_probs=58.1

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ...+|.+||=+|||. |++.+.+++ .|++++++|. ++-++.+++    .+.              -.+  .+..+...
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~----lGa--------------d~~--i~~~~~~~   86 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGA--------------DEV--VNSRNADE   86 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTC--------------SEE--EETTCHHH
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc----cCC--------------cEE--EECchhhH
Confidence            345788999999986 888887776 4889888888 555555543    222              011  22222221


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .......+|+++-.  .-.    +..++...++++++|++++.-
T Consensus        87 ~~~~~~~~D~vid~--~g~----~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          87 MAAHLKSFDFILNT--VAA----PHNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             HHTTTTCEEEEEEC--CSS----CCCHHHHHTTEEEEEEEEECC
T ss_pred             HHHhcCCCceeeee--eec----chhHHHHHHHHhcCCEEEEec
Confidence            22234579988764  222    233455667889999988764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.65  E-value=0.0007  Score=48.35  Aligned_cols=94  Identities=18%  Similarity=0.187  Sum_probs=58.5

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||=+|||. |+.++.+++. |+ +|+++|. ++-++.+++    .+.              ..+.  +..+...
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa--------------~~~i--~~~~~~~   84 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGA--------------TDIL--NYKNGHI   84 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTC--------------SEEE--CGGGSCH
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCc--------------cccc--cccchhH
Confidence            44688898899986 8888888875 76 5999999 554555542    221              1121  1122110


Q ss_pred             ---cc--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 ---IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ---~~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                         ..  .....+|+|+-+      ...+..++...++++|+|++.+.-
T Consensus        85 ~~~v~~~t~g~G~D~vid~------~g~~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          85 EDQVMKLTNGKGVDRVIMA------GGGSETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             HHHHHHHTTTSCEEEEEEC------SSCTTHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHhhccCcceEEEc------cCCHHHHHHHHHHHhcCCEEEEEe
Confidence               00  113459988765      222456677778899999988763

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.60  E-value=0.0023  Score=47.74  Aligned_cols=57  Identities=18%  Similarity=0.158  Sum_probs=47.0

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHH
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVE  106 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~  106 (205)
                      .+.|.+++...        ...+|..|||--||+|..++++.+.|-+.+++|+ ++.++.|++.+.
T Consensus       198 P~~L~~~lI~~--------~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         198 PRDLIERIIRA--------SSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CHHHHHHHHHH--------HCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHH--------hCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            35566666553        2346889999999999999999999999999999 789999988764

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.56  E-value=0.0012  Score=51.41  Aligned_cols=74  Identities=22%  Similarity=0.184  Sum_probs=51.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ...+.+||||-||.|-+++.+.+.|.+ |.++|+ +.+++..+.|....                   ...|..+.... 
T Consensus         8 ~~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-------------------~~~Di~~~~~~-   67 (327)
T d2c7pa1           8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------------------PEGDITQVNEK-   67 (327)
T ss_dssp             TTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------------------CBSCGGGSCGG-
T ss_pred             cCCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-------------------CcCchhcCchh-
Confidence            446789999999999999999999998 777899 67888877774211                   12222322211 


Q ss_pred             cCCCCccEEEEcccccC
Q 028673          140 AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~  156 (205)
                       ....+|+++++.+.-.
T Consensus        68 -~~~~~Dll~ggpPCq~   83 (327)
T d2c7pa1          68 -TIPDHDILCAGFPCQA   83 (327)
T ss_dssp             -GSCCCSEEEEECCCTT
T ss_pred             -hcceeeeeecccccch
Confidence             1346899999887633

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.54  E-value=0.0031  Score=47.59  Aligned_cols=109  Identities=10%  Similarity=-0.022  Sum_probs=67.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCC------------------------------------------EEEEEcC-cchHHHH
Q 028673           65 GKRVIELGAGCGVAGFGMALLGC------------------------------------------NVITTDQ-IEVLPLL  101 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~g~------------------------------------------~v~~~D~-~~~l~~~  101 (205)
                      +..++|--||+|.+.|.+|....                                          ++++.|. +++++.+
T Consensus        51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A  130 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  130 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence            34699999999999998876422                                          1345555 4455555


Q ss_pred             H---HHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc--cCCCCccEEEEcccccC-----Cc----ChHhHHHHH
Q 028673          102 K---RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--AVAPPFDYIIGTDVVYA-----EH----LLEPLLQTI  167 (205)
Q Consensus       102 ~---~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~--~~~~~fD~Ii~~d~~y~-----~~----~~~~ll~~~  167 (205)
                      +   .|++..+           ....+.+...|+.+.....  ..+..+++||+|+++=.     .+    .+..+...+
T Consensus       131 ~~~r~n~~~Ag-----------l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l  199 (249)
T d1o9ga_         131 RRLRERLTAEG-----------GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL  199 (249)
T ss_dssp             HHHHHHHHHTT-----------SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-----------CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHH
Confidence            2   3444443           2456788887665443221  12456899999988743     11    245666677


Q ss_pred             HHhhCCCcEEEEEEeec
Q 028673          168 FALSGPKTTILVMFSLS  184 (205)
Q Consensus       168 ~~~l~~~g~~~i~~~~r  184 (205)
                      .+.+.....++++...|
T Consensus       200 ~~~~p~~s~~~it~~~~  216 (249)
T d1o9ga_         200 ASALPAHAVIAVTDRSR  216 (249)
T ss_dssp             HHHSCTTCEEEEEESSS
T ss_pred             HccCCCCcEEEEeCchh
Confidence            77786666666665544

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.52  E-value=0.0035  Score=47.29  Aligned_cols=59  Identities=20%  Similarity=0.234  Sum_probs=48.9

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHh
Q 028673           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (205)
Q Consensus        42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (205)
                      .+.|.+++...        ...+|..|||--||+|..++++.+.|-+.+++|+ ++.++.+++.+..-
T Consensus       193 P~~L~~~~I~~--------~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         193 PAAVIERLVRA--------LSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CHHHHHHHHHH--------HSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHh--------hcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            56677776654        2347889999999999999999999999999999 78999999887653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.47  E-value=0.01  Score=41.98  Aligned_cols=96  Identities=18%  Similarity=0.178  Sum_probs=61.6

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+|.+||=+|||. |+.++.+++. |+ +|+++|. ++-++.+++    .+.              ..+..  ....+
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga--------------~~~i~--~~~~~   84 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGA--------------TDCLN--PRELD   84 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC--------------SEEEC--GGGCS
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCC--------------CcccC--Cccch
Confidence            345788999999997 9999988876 77 5999999 555555543    222              11211  11111


Q ss_pred             Cc------ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCC-cEEEEEEe
Q 028673          137 HI------KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILVMFS  182 (205)
Q Consensus       137 ~~------~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~i~~~  182 (205)
                      ..      ......+|+++-+      .-.+..++...+.++++ |++++.-.
T Consensus        85 ~~~~~~~~~~~~~G~d~vie~------~G~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          85 KPVQDVITELTAGGVDYSLDC------AGTAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             SCHHHHHHHHHTSCBSEEEES------SCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             hhhhhhHhhhhcCCCcEEEEe------cccchHHHHHHHHhhcCCeEEEecCC
Confidence            10      0123568888765      45567788888888885 88877743

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0013  Score=46.67  Aligned_cols=92  Identities=22%  Similarity=0.244  Sum_probs=58.2

Q ss_pred             CCCCCeEEEeCC-C-ccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGA-G-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGc-G-tGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||=.|+ | .|..++.+++. |++|++++. ++-.+.+++    .+.              -.+.  +-.+.+.
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga--------------~~vi--~~~~~~~   85 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGA--------------HEVF--NHREVNY   85 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC--------------SEEE--ETTSTTH
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCc--------------cccc--ccccccH
Confidence            447889999997 4 48888887765 899998887 544444442    332              1222  2222210


Q ss_pred             c-----ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          138 I-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       138 ~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .     ......+|+|+.+       .-...++...++++|+|+++..
T Consensus        86 ~~~i~~~t~~~g~d~v~d~-------~g~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          86 IDKIKKYVGEKGIDIIIEM-------LANVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHHHHHHHCTTCEEEEEES-------CHHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHhhhhhccCCceEEeec-------ccHHHHHHHHhccCCCCEEEEE
Confidence            0     1124579998875       2245677788889999998875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.41  E-value=0.0024  Score=44.70  Aligned_cols=92  Identities=17%  Similarity=0.207  Sum_probs=54.8

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ..+|.+||=+|||. |++.+.+++. |++|+++|. ++-++.+++    .+.              -.+.  +..+.+..
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~----~Ga--------------~~~i--~~~~~~~~   84 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK----LGA--------------SLTV--NARQEDPV   84 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC--------------SEEE--ETTTSCHH
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc----cCc--------------cccc--cccchhHH
Confidence            34678898899986 8888877765 889999999 555555543    322              1122  21222110


Q ss_pred             ---c-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          139 ---K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       139 ---~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                         . ...+.++.|+++       .-...++...++++++|++++.
T Consensus        85 ~~~~~~~~g~~~~i~~~-------~~~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          85 EAIQRDIGGAHGVLVTA-------VSNSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             HHHHHHHSSEEEEEECC-------SCHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHhhcCCccccccc-------ccchHHHHHHHHhcCCcEEEEE
Confidence               0 112223344332       2245677778899999998775

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.28  E-value=0.0051  Score=47.27  Aligned_cols=70  Identities=19%  Similarity=0.213  Sum_probs=49.7

Q ss_pred             eEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      +||||-||.|-+++.+.+.|.+ +.++|+ +.+++..+.|..                  -.+...|..+....  ..+.
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~------------------~~~~~~Di~~~~~~--~~~~   61 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------------------AKLIKGDISKISSD--EFPK   61 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC------------------SEEEESCTTTSCGG--GSCC
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------------------CCCccCChhhCCHh--Hccc
Confidence            6999999999999988888998 679999 667776666532                  13344455544321  1347


Q ss_pred             ccEEEEcccccC
Q 028673          145 FDYIIGTDVVYA  156 (205)
Q Consensus       145 fD~Ii~~d~~y~  156 (205)
                      .|+++++.+.-.
T Consensus        62 ~dll~~g~PCq~   73 (324)
T d1dcta_          62 CDGIIGGPPCQS   73 (324)
T ss_dssp             CSEEEECCCCTT
T ss_pred             ccEEeecccccc
Confidence            999999877643

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.23  E-value=0.0024  Score=45.80  Aligned_cols=114  Identities=15%  Similarity=0.161  Sum_probs=62.3

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCC--CCCCCceEEEEeecCCCC--
Q 028673           64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG--SDLLGSIQAVELDWGNED--  136 (205)
Q Consensus        64 ~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~--~~~~~~i~~~~~dw~~~~--  136 (205)
                      +..+|+=||+|+ |+.++..|+ +|++|++.|. ++.++.++.....+.. .....+.  .....-..-..-+|....  
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~-~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFIT-VDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECC-C-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEE-EeccccccccccccchhhcCHHHHHHHHH
Confidence            456999999997 888887775 5999999999 7777766653221100 0000000  000000000000010000  


Q ss_pred             CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673          137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  178 (205)
Q Consensus       137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  178 (205)
                      .+...-...|+||.+-.+--...+.-+-+..-+.+|||+.++
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence            001112468999998777666665556677778889988754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.19  E-value=0.0061  Score=43.05  Aligned_cols=96  Identities=17%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||=+|||. |+.++.+++. |++ |+.+|. ++-++.+++    .+.              ..+...+-.+..+
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga--------------~~~i~~~~~~~~~   87 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGA--------------THVINSKTQDPVA   87 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTC--------------SEEEETTTSCHHH
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCC--------------eEEEeCCCcCHHH
Confidence            44688999999985 7777777754 775 788898 555555553    222              1222211111100


Q ss_pred             -c-ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 -I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 -~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                       . ...++.+|+|+-+      .-.+..++...++++++|++.+.-
T Consensus        88 ~i~~~t~gg~D~vid~------~G~~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          88 AIKEITDGGVNFALES------TGSPEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HHHHHTTSCEEEEEEC------SCCHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHcCCCCcEEEEc------CCcHHHHHHHHhcccCceEEEEEe
Confidence             0 1123478888765      345677888889999999988763

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0025  Score=49.91  Aligned_cols=42  Identities=12%  Similarity=0.123  Sum_probs=34.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHH
Q 028673           64 KGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNV  105 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~  105 (205)
                      ++..|||+|.|.|.++..+... ++ +|+++|. +..++.+++..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~   87 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF   87 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc
Confidence            5678999999999999999876 44 6999999 66777776543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.14  E-value=0.0051  Score=44.21  Aligned_cols=80  Identities=10%  Similarity=0.133  Sum_probs=54.2

Q ss_pred             CCCCCCCeEEEeCCCcc---HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           60 PSKLKGKRVIELGAGCG---VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtG---l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ..+++||+||=.|++.|   .++..+++.|++|+.++. ++-++.+...+..+.              .+.+...|..+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~d~~~~   83 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--------------KVNVTAAETADD   83 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--------------TCCCEEEECCSH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc--------------chhhhhhhcccH
Confidence            45789999999998766   345556677999999999 666666666666553              234455555554


Q ss_pred             CCcccCCCCccEEEEccc
Q 028673          136 DHIKAVAPPFDYIIGTDV  153 (205)
Q Consensus       136 ~~~~~~~~~fD~Ii~~d~  153 (205)
                      ......-+..|+++.+--
T Consensus        84 ~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          84 ASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             HHHHHHTTTCSEEEECCC
T ss_pred             HHHHHHhcCcCeeeecCc
Confidence            433333457888887643

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.08  E-value=0.0024  Score=49.10  Aligned_cols=56  Identities=9%  Similarity=0.009  Sum_probs=45.1

Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHH
Q 028673           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW  107 (205)
Q Consensus        44 ~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~  107 (205)
                      .|.+++...        ...+|..|||--||+|..++++.+.|-+.+++|+ ++.++.+++.+..
T Consensus       238 ~L~~rlI~~--------~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         238 KLPEFFIRM--------LTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHH--------HCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHhhhh--------cccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            555555543        2336889999999999999999999999999999 7888888776543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.026  Score=42.33  Aligned_cols=85  Identities=15%  Similarity=0.208  Sum_probs=57.3

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++||+||=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.++..+.           ..++.....|..+.+
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-----------~~~~~~~~~Dls~~~   74 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-----------PGTLIPYRCDLSNEE   74 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------SSEEEEEECCTTCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CceEEEEEccCCCHH
Confidence            45789999999999885   33444566999999999 6666666665555421           245777788877765


Q ss_pred             Ccc-------cCCCCccEEEEcccccC
Q 028673          137 HIK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ...       ..-++.|++|.+--...
T Consensus        75 ~v~~~v~~~~~~~g~iD~lVnnAg~~~  101 (257)
T d1xg5a_          75 DILSMFSAIRSQHSGVDICINNAGLAR  101 (257)
T ss_dssp             HHHHHHHHHHHHHCCCSEEEECCCCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEecccccC
Confidence            321       11357898887754443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.81  E-value=0.0069  Score=42.18  Aligned_cols=93  Identities=22%  Similarity=0.200  Sum_probs=55.4

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-  137 (205)
                      ..++.+||=.|||. |+..+.+++. |++|+++|. ++-++.+++    .+.               +. ..+..+.+. 
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga---------------~~-~~~~~~~~~~   84 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGA---------------DL-VVNPLKEDAA   84 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC---------------SE-EECTTTSCHH
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCc---------------ce-ecccccchhh
Confidence            44688999999986 8777777765 789999998 554554443    332               11 112222210 


Q ss_pred             --cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          138 --IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       138 --~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                        .....+.+|.++..      ..-...+....++++++|++++.
T Consensus        85 ~~~~~~~~~~~~~v~~------~~~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          85 KFMKEKVGGVHAAVVT------AVSKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             HHHHHHHSSEEEEEES------SCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             hhcccccCCCceEEee------cCCHHHHHHHHHHhccCCceEec
Confidence              01111234444322      12356778888889999998876

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0063  Score=47.21  Aligned_cols=74  Identities=19%  Similarity=0.092  Sum_probs=45.7

Q ss_pred             CeEEEeCCCccHHHHHHHHhCC--E-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673           66 KRVIELGAGCGVAGFGMALLGC--N-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (205)
Q Consensus        66 ~~VLdlGcGtGl~sl~~a~~g~--~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~  141 (205)
                      .+|+||.||.|-+++.+...|.  + |.++|+ +.+++..+.|..                 ...+...|..+.......
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~-----------------~~~~~~~di~~~~~~~~~   65 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----------------HTQLLAKTIEGITLEEFD   65 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------------TSCEECSCGGGCCHHHHH
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC-----------------CCCcccCchhhCCHhHcC
Confidence            4799999999988888877775  5 678999 667777776632                 122333222222111111


Q ss_pred             CCCccEEEEcccccC
Q 028673          142 APPFDYIIGTDVVYA  156 (205)
Q Consensus       142 ~~~fD~Ii~~d~~y~  156 (205)
                      ...+|+++++.+.-.
T Consensus        66 ~~~~Dll~ggpPCq~   80 (343)
T d1g55a_          66 RLSFDMILMSPPCQP   80 (343)
T ss_dssp             HHCCSEEEECCC---
T ss_pred             CCCccEEEeeccccc
Confidence            236899999877643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.28  E-value=0.0067  Score=42.48  Aligned_cols=95  Identities=18%  Similarity=0.158  Sum_probs=57.7

Q ss_pred             CCCCCCeEEEeCC-C-ccHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           61 SKLKGKRVIELGA-G-CGVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        61 ~~~~~~~VLdlGc-G-tGl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      ...++.+||=+|| | .|++.+.+++ .|. +|+++|. ++-++.+++    .+.             . .+..  ..+.
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga-------------~-~~i~--~~~~   83 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGA-------------D-YVIN--ASMQ   83 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTC-------------S-EEEE--TTTS
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCC-------------c-eeec--cCCc
Confidence            3457889999997 4 4676666554 464 6999998 555555553    232             0 1112  1221


Q ss_pred             CCc-----ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          136 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       136 ~~~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      +..     ......||+|+-+      ..-+..++...++++|+|++++.-
T Consensus        84 ~~~~~~~~~~~~~~~d~vid~------~g~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          84 DPLAEIRRITESKGVDAVIDL------NNSEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             CHHHHHHHHTTTSCEEEEEES------CCCHHHHTTGGGGEEEEEEEEECC
T ss_pred             CHHHHHHHHhhcccchhhhcc------cccchHHHhhhhhcccCCEEEEec
Confidence            110     0123568988865      344566677778899999987763

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.20  E-value=0.059  Score=40.44  Aligned_cols=84  Identities=21%  Similarity=0.314  Sum_probs=56.9

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-c-chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC
Q 028673           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (205)
Q Consensus        60 ~~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~  134 (205)
                      +..++||++|=-|++.|+   ++..+++.|++|+++|. + +.++.+...++.++             .++.+...|..+
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~D~~~   79 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG-------------SDAACVKANVGV   79 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTC
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC-------------CceeeEeCCCCC
Confidence            456789999999998875   45566677999999987 3 45666666555553             357777877776


Q ss_pred             CCCcc-------cCCCCccEEEEcccccC
Q 028673          135 EDHIK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       135 ~~~~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      .+...       ...++.|+++.+--...
T Consensus        80 ~~~v~~~~~~~~~~~g~idilV~nag~~~  108 (272)
T d1g0oa_          80 VEDIVRMFEEAVKIFGKLDIVCSNSGVVS  108 (272)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCccccccccch
Confidence            54321       12357898887754433

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.98  E-value=0.0086  Score=42.09  Aligned_cols=93  Identities=16%  Similarity=0.123  Sum_probs=57.7

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-
Q 028673           63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  137 (205)
Q Consensus        63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-  137 (205)
                      .+|.+||=.|||. |+..+.+++ .|+ .|+++|. ++-++.+++    .+.              ..+..  ..+... 
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga--------------~~~i~--~~~~~~~   90 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGA--------------DHVVD--ARRDPVK   90 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTC--------------SEEEE--TTSCHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----ccc--------------ceeec--CcccHHH
Confidence            4678999999986 777777775 476 5899998 554555543    221              12222  121110 


Q ss_pred             --cc-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 --IK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 --~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                        .. .....+|+|+-+      ..-...++...++++++|++++.-
T Consensus        91 ~~~~~~~~~g~d~vid~------~g~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          91 QVMELTRGRGVNVAMDF------VGSQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             HHHHHTTTCCEEEEEES------SCCHHHHHHGGGGEEEEEEEEECC
T ss_pred             HHHHhhCCCCceEEEEe------cCcchHHHHHHHHHhCCCEEEEEe
Confidence              00 113458887765      344566788888999999988764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.96  E-value=0.037  Score=41.46  Aligned_cols=82  Identities=16%  Similarity=0.104  Sum_probs=55.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      +++||+||=.|+..|+   ++..+++.|++|+++|. ++-++.+.+.+...+             ..+.+...|..+.++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~-------------~~~~~~~~D~s~~~~   69 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG-------------LNVEGSVCDLLSRTE   69 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEEeecCCHHH
Confidence            5689999999998774   34555677999999999 666666666665553             356777777776653


Q ss_pred             cc--------cCCCCccEEEEcccccC
Q 028673          138 IK--------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       138 ~~--------~~~~~fD~Ii~~d~~y~  156 (205)
                      ..        ....+.|+++.+--+..
T Consensus        70 ~~~~~~~~~~~~~g~idilinnag~~~   96 (258)
T d1ae1a_          70 RDKLMQTVAHVFDGKLNILVNNAGVVI   96 (258)
T ss_dssp             HHHHHHHHHHHTTSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHhCCCcEEEeccccccc
Confidence            21        12357888886544433

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.94  E-value=0.13  Score=38.15  Aligned_cols=82  Identities=18%  Similarity=0.278  Sum_probs=53.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.+....            ..++.....|..+.+.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~------------g~~~~~~~~Dv~~~~~   69 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY------------GVETMAFRCDVSNYEE   69 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh------------CCcEEEEEccCCCHHH
Confidence            4689999999998874   45555677999999999 555554444443321            1356677777776543


Q ss_pred             cc-------cCCCCccEEEEccccc
Q 028673          138 IK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      ..       ..-++.|++|.+--+.
T Consensus        70 v~~~~~~~~~~~g~iDiLVnnAG~~   94 (251)
T d1vl8a_          70 VKKLLEAVKEKFGKLDTVVNAAGIN   94 (251)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            21       1125799988765443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.87  E-value=0.028  Score=39.31  Aligned_cols=101  Identities=16%  Similarity=0.079  Sum_probs=56.3

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (205)
Q Consensus        66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~  142 (205)
                      ++|-=+|||. | .++..+++.|.+|++.|. ++-++.++.+    +.....       .+..................-
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~~e~~   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR----GAIIAE-------GPGLAGTAHPDLLTSDIGLAV   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----TSEEEE-------SSSCCEEECCSEEESCHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----CCCchh-------hhhhhhhhhhhhhhhhhHhHh
Confidence            5778899986 3 556667778999999999 5544443322    110000       000000000000000011112


Q ss_pred             CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ...|+|+.+-   .....+.+++.+..+++++..++++
T Consensus        71 ~~aD~iii~v---~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          71 KDADVILIVV---PAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             TTCSEEEECS---CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             cCCCEEEEEE---chhHHHHHHHHhhhccCCCCEEEEe
Confidence            4689998872   3446788999999999988765543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.02  Score=40.15  Aligned_cols=93  Identities=12%  Similarity=0.081  Sum_probs=56.8

Q ss_pred             CCCCCeEEEeCCCc--cHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC--GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt--Gl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||=.|+|.  |...+.+|+. |++|+++|. ++-.+.+++    .+.              -.+  .+..+.+.
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~----lGa--------------~~v--i~~~~~d~   85 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGA--------------WQV--INYREEDL   85 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTC--------------SEE--EETTTSCH
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh----cCC--------------eEE--EECCCCCH
Confidence            44688999997764  6777777764 899999998 555555543    222              122  22233221


Q ss_pred             c---c--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 I---K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ~---~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .   .  -....+|+|+-+  .-     .+.+......++++|++++..
T Consensus        86 ~~~v~~~t~g~g~d~v~d~--~g-----~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          86 VERLKEITGGKKVRVVYDS--VG-----RDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             HHHHHHHTTTCCEEEEEEC--SC-----GGGHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHhCCCCeEEEEeC--cc-----HHHHHHHHHHHhcCCeeeecc
Confidence            1   0  124578887765  21     234567778889999876653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.062  Score=39.84  Aligned_cols=83  Identities=18%  Similarity=0.220  Sum_probs=59.4

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..+.|+.+|=-|++.|+   ++..+++.|++|+.+|. ++-++.+...+...+             .++.....|..+.+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~-------------~~~~~~~~Dvs~~~   69 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG-------------AKVHTFVVDCSNRE   69 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHH
Confidence            46789999999999884   45556677999999999 666777776665542             46778888887765


Q ss_pred             Ccc-------cCCCCccEEEEcccccC
Q 028673          137 HIK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ...       ...+..|+++.+--+..
T Consensus        70 ~v~~~~~~i~~~~g~idilinnag~~~   96 (244)
T d1yb1a_          70 DIYSSAKKVKAEIGDVSILVNNAGVVY   96 (244)
T ss_dssp             HHHHHHHHHHHHTCCCSEEEECCCCCC
T ss_pred             HHHHHHHHHHHHcCCCceeEeeccccc
Confidence            321       12457899887765544

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.062  Score=39.96  Aligned_cols=88  Identities=18%  Similarity=0.171  Sum_probs=57.8

Q ss_pred             CCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      .||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+....           ...++.+...|..+.+...
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dv~~~~~v~   70 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF-----------EPQKTLFIQCDVADQQQLR   70 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS-----------CGGGEEEEECCTTSHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc-----------CCCcEEEEEeecCCHHHHH
Confidence            58899999998774   34445567999999999 665555554443221           1235777888877754321


Q ss_pred             -------cCCCCccEEEEcccccCCcChHh
Q 028673          140 -------AVAPPFDYIIGTDVVYAEHLLEP  162 (205)
Q Consensus       140 -------~~~~~fD~Ii~~d~~y~~~~~~~  162 (205)
                             ..-++.|+++.+--+.....++.
T Consensus        71 ~~~~~~~~~~G~iDilVnnAg~~~~~~~~~  100 (254)
T d2gdza1          71 DTFRKVVDHFGRLDILVNNAGVNNEKNWEK  100 (254)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCSSSHHH
T ss_pred             HHHHHHHHHcCCcCeecccccccccccchh
Confidence                   11258999998877777666554

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.29  E-value=0.015  Score=40.91  Aligned_cols=92  Identities=20%  Similarity=0.196  Sum_probs=55.1

Q ss_pred             CCCCCeEEEeCC-C-ccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGA-G-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGc-G-tGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||=.|+ | .|.+++.+|+. |++|++++. ++-.+.++    ..+.              -.+.  +..+.+.
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~----~~Ga--------------~~vi--~~~~~~~   82 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS----RLGV--------------EYVG--DSRSVDF   82 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----TTCC--------------SEEE--ETTCSTH
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccc----cccc--------------cccc--cCCccCH
Confidence            446789999884 4 47777777754 899888876 54444444    2332              1221  2222211


Q ss_pred             ---cc--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          138 ---IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       138 ---~~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                         ..  .....+|+|+.+  +-     .+.++.+.++++++|+++..
T Consensus        83 ~~~v~~~t~~~g~d~v~d~--~g-----~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          83 ADEILELTDGYGVDVVLNS--LA-----GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             HHHHHHHTTTCCEEEEEEC--CC-----THHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHhCCCCEEEEEec--cc-----chHHHHHHHHhcCCCEEEEE
Confidence               00  124579999865  22     24566677889999998775

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.26  E-value=0.11  Score=36.20  Aligned_cols=95  Identities=16%  Similarity=0.081  Sum_probs=57.0

Q ss_pred             CCCeEEEeCC--CccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGA--GCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGc--GtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+||=-|+  |.|..++.+|+. |++|+++.- ++-.+.+++    .+.             ...+..-++.......
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~----lGa-------------d~vi~~~~~~~~~~~~   85 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGA-------------SEVISREDVYDGTLKA   85 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTC-------------SEEEEHHHHCSSCCCS
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHh----hcc-------------cceEeccchhchhhhc
Confidence            4567887775  347778877764 999999988 555555543    222             1111111211111112


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      ...+.+|+|+-+       .-.+.+....+.++++|++++.-.
T Consensus        86 ~~~~gvd~vid~-------vgg~~~~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2          86 LSKQQWQGAVDP-------VGGKQLASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             SCCCCEEEEEES-------CCTHHHHHHHTTEEEEEEEEECCC
T ss_pred             ccCCCceEEEec-------CcHHHHHHHHHHhccCceEEEeec
Confidence            234678988765       224567778888999999887643

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.23  E-value=0.063  Score=40.13  Aligned_cols=83  Identities=16%  Similarity=0.023  Sum_probs=55.5

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.+...+             .++.....|..+.+
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~-------------~~~~~~~~Dv~~~~   70 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG-------------FQVTGSVCDASLRP   70 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEeccCCCHH
Confidence            46689999999998875   45555677999999999 666666666555442             35777777776554


Q ss_pred             Ccc--------cCCCCccEEEEcccccC
Q 028673          137 HIK--------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       137 ~~~--------~~~~~fD~Ii~~d~~y~  156 (205)
                      ...        ...++.|+++.+--+..
T Consensus        71 ~v~~~~~~~~~~~~g~idilvnnAG~~~   98 (259)
T d1xq1a_          71 EREKLMQTVSSMFGGKLDILINNLGAIR   98 (259)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEECCC--
T ss_pred             HHHHHHHHHHHHhCCCcccccccccccC
Confidence            321        11357899887754433

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.16  E-value=0.11  Score=38.77  Aligned_cols=82  Identities=15%  Similarity=0.124  Sum_probs=55.4

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.+...+             .++.+...|..+.+
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~~~~   70 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-------------FKVEASVCDLSSRS   70 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CEEEEEECCTTCHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEEeeCCCHH
Confidence            46789999999998874   35555667999999999 666666666555443             35667777776654


Q ss_pred             Ccc--------cCCCCccEEEEccccc
Q 028673          137 HIK--------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       137 ~~~--------~~~~~fD~Ii~~d~~y  155 (205)
                      ...        ....+.|+++.+--+.
T Consensus        71 ~v~~~~~~~~~~~~~~idilvnnAG~~   97 (259)
T d2ae2a_          71 ERQELMNTVANHFHGKLNILVNNAGIV   97 (259)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCceEEEECCcee
Confidence            321        1134789998775443

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.07  E-value=0.4  Score=32.84  Aligned_cols=95  Identities=14%  Similarity=0.085  Sum_probs=57.5

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-
Q 028673           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-  135 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-  135 (205)
                      ...+|.+||=.|||- |..++.+++ .|+ .|+++|. ++-++.+++    .+.              -.+..  ..+. 
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa--------------~~~i~--~~~~~   84 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGA--------------TECIN--PQDFS   84 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTC--------------SEEEC--GGGCS
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCC--------------cEEEe--CCchh
Confidence            345788999999973 666666665 475 5999998 555665553    332              11211  1111 


Q ss_pred             CCc-----ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          136 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       136 ~~~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      +..     ......+|+|+-+      .-.+.+++....++++++.+.+..
T Consensus        85 ~~~~~~~~~~~~~g~D~vid~------~G~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          85 KPIQEVLIEMTDGGVDYSFEC------IGNVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             SCHHHHHHHHTTSCBSEEEEC------SCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             hHHHHHHHHHcCCCCcEeeec------CCCHHHHHHHHHhhcCCceeEEEE
Confidence            100     1123568888865      334577888888898887766553

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.86  E-value=0.069  Score=39.86  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=54.8

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++||++|=-|++.|+   ++..+++.|++|+.+|. ++.++.+...+.....           ..++.....|..+.+..
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~-----------~~~~~~~~~Dvt~~~~v   70 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP-----------DAEVLTTVADVSDEAQV   70 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT-----------TCCEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-----------CCeEEEEeccCCCHHHH
Confidence            478999999998874   46666778999999999 6666666655544421           23577778787776532


Q ss_pred             c-------cCCCCccEEEEccc
Q 028673          139 K-------AVAPPFDYIIGTDV  153 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d~  153 (205)
                      .       ..-++.|++|.|--
T Consensus        71 ~~~~~~~~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          71 EAYVTATTERFGRIDGFFNNAG   92 (258)
T ss_dssp             HHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCc
Confidence            1       11257898887643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.77  E-value=0.056  Score=38.67  Aligned_cols=100  Identities=21%  Similarity=0.080  Sum_probs=60.9

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||-+|||. |++++.+++. |+ +|+++|. ++-++.+++    .+.              -.+..  -.+.+.
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----~Ga--------------~~~~~--~~~~~~   82 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF--------------EIADL--SLDTPL   82 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC--------------EEEET--TSSSCH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh----ccc--------------cEEEe--CCCcCH
Confidence            44788999999997 8888877764 66 6999999 666666554    221              11111  111100


Q ss_pred             ---c--ccCCCCccEEEEccc---c------cCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 ---I--KAVAPPFDYIIGTDV---V------YAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ---~--~~~~~~fD~Ii~~d~---~------y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                         .  ......+|+++-+--   .      .........++...+.++|+|++.+.-
T Consensus        83 ~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          83 HEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             HHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             HHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence               0  012346888874311   0      112224578899999999999988773

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=93.71  E-value=0.25  Score=38.74  Aligned_cols=27  Identities=7%  Similarity=-0.105  Sum_probs=20.5

Q ss_pred             hHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673          160 LEPLLQTIFALSGPKTTILVMFSLSMF  186 (205)
Q Consensus       160 ~~~ll~~~~~~l~~~g~~~i~~~~r~~  186 (205)
                      +..+|+.-.+-|.|||+++++...|..
T Consensus       188 ~~~FL~~Ra~ELv~GG~mvl~~~gr~~  214 (359)
T d1m6ex_         188 HALFLRCRAQEVVPGGRMVLTILGRRS  214 (359)
T ss_dssp             HHHHHHHHHHHBCTTCEEEEEEEECSS
T ss_pred             HHHHHHHHHHHhcCCcEEEEEEeccCC
Confidence            345666667779999999999877654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.64  E-value=0.076  Score=39.43  Aligned_cols=83  Identities=13%  Similarity=0.058  Sum_probs=56.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ..+++|.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.++..+             .++.....|..+.+
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-------------~~~~~~~~Dvt~~~   72 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-------------YESSGYAGDVSKKE   72 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-------------CCEEEEECCTTCHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHH
Confidence            35679999999998773   23344456899999999 666666666665442             35777787777654


Q ss_pred             Ccc-------cCCCCccEEEEcccccC
Q 028673          137 HIK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ...       ..-++.|+++.+--+..
T Consensus        73 ~v~~~~~~~~~~~g~iDilvnnag~~~   99 (251)
T d2c07a1          73 EISEVINKILTEHKNVDILVNNAGITR   99 (251)
T ss_dssp             HHHHHHHHHHHHCSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHhcCCceeeeecccccc
Confidence            321       12368998887765544

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.50  E-value=0.15  Score=38.76  Aligned_cols=90  Identities=17%  Similarity=0.264  Sum_probs=58.4

Q ss_pred             CCCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC
Q 028673           59 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (205)
Q Consensus        59 ~~~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~  134 (205)
                      .|..++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.+..+...        ....++.....|..+
T Consensus         6 ~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~--------~~~~~~~~~~~Dvs~   77 (297)
T d1yxma1           6 APGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP--------TKQARVIPIQCNIRN   77 (297)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT--------TCCCCEEEEECCTTC
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc--------ccCceEEEEeccCCC
Confidence            3667899999999998874   23455567999999999 66666665555443210        113467777877776


Q ss_pred             CCCcc-------cCCCCccEEEEcccccC
Q 028673          135 EDHIK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       135 ~~~~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      .+...       ..-++.|++|.+--+..
T Consensus        78 ~~~v~~~~~~~~~~~G~iDiLVnnAg~~~  106 (297)
T d1yxma1          78 EEEVNNLVKSTLDTFGKINFLVNNGGGQF  106 (297)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHHhCCeEEEEeeccccc
Confidence            65321       11357898887654433

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.46  E-value=0.13  Score=36.11  Aligned_cols=98  Identities=14%  Similarity=0.006  Sum_probs=57.2

Q ss_pred             CCCCCeEEEeCCC--ccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAG--CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcG--tGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||=-|++  .|..++.+++ .|++|+++-- ++-.+.+++    .+.            +.+.-...+|.+.. 
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~----lGa------------~~vi~~~~~~~~~~-   91 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGA------------KEVLAREDVMAERI-   91 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTC------------SEEEECC--------
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh----ccc------------ceeeecchhHHHHH-
Confidence            3457889999974  4677787775 4899999987 555555543    222            11111111111111 


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL  183 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~  183 (205)
                      ....++.+|+|+-+  +     -...+....+.|+++|+++..-..
T Consensus        92 ~~~~~~gvD~vid~--v-----gg~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          92 RPLDKQRWAAAVDP--V-----GGRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             --CCSCCEEEEEEC--S-----TTTTHHHHHHTEEEEEEEEECSCC
T ss_pred             HHhhccCcCEEEEc--C-----CchhHHHHHHHhCCCceEEEeecc
Confidence            11134679988765  2     234577777889999998877543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.24  E-value=0.023  Score=40.13  Aligned_cols=93  Identities=22%  Similarity=0.212  Sum_probs=57.8

Q ss_pred             CCCCCeEEEeCCCc--cHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGC--GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGt--Gl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|.+||=.|++.  |..++.+++. |++|++++. ++-.+.+++    .+.              -.+..  -.+...
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~----~Ga--------------~~vi~--~~~~~~   86 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGF--------------DAAFN--YKTVNS   86 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC--------------SEEEE--TTSCSC
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh----hhh--------------hhhcc--cccccH
Confidence            44789999989854  6667777764 889999987 554444443    222              11211  121111


Q ss_pred             c-----ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          138 I-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       138 ~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .     ......+|+|+-+  +    - .+.++...++++++|++++.-
T Consensus        87 ~~~~~~~~~~~Gvd~v~D~--v----G-~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          87 LEEALKKASPDGYDCYFDN--V----G-GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             HHHHHHHHCTTCEEEEEES--S----C-HHHHHHHGGGEEEEEEEEECC
T ss_pred             HHHHHHHhhcCCCceeEEe--c----C-chhhhhhhhhccCCCeEEeec
Confidence            0     1124568888764  2    2 467788899999999988763

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.22  E-value=0.17  Score=34.60  Aligned_cols=86  Identities=12%  Similarity=0.125  Sum_probs=50.7

Q ss_pred             eEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        67 ~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      +|.=+|+|. | .++..+.+.|.+|++.|. ++.++.+++    ++.              +....   ...+    .-.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~--------------~~~~~---~~~~----~~~   56 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQL--------------VDEAG---QDLS----LLQ   56 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTS--------------CSEEE---SCGG----GGT
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhc--------------cceee---eecc----ccc
Confidence            455677774 3 344555567999999999 665554432    221              11111   1111    124


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      ..|+|+.+=+   ....+.+++.+...++++..+.-+
T Consensus        57 ~~DiIilavp---~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          57 TAKIIFLCTP---IQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             TCSEEEECSC---HHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             ccccccccCc---Hhhhhhhhhhhhhhcccccceeec
Confidence            7899987632   345677888888888887765544

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.20  E-value=0.24  Score=33.96  Aligned_cols=94  Identities=14%  Similarity=0.099  Sum_probs=54.2

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673           66 KRVIELGAGC-G-VAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (205)
Q Consensus        66 ~~VLdlGcGt-G-l~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~  140 (205)
                      ++|+=+|||. | .++..+.+.|.  +|+++|. ++.++.++++   + .              +....   ....  ..
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~---~-~--------------~~~~~---~~~~--~~   58 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---G-I--------------IDEGT---TSIA--KV   58 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---T-S--------------CSEEE---SCGG--GG
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh---h-c--------------chhhh---hhhh--hh
Confidence            3577788874 2 34444555564  6999999 6666655542   1 1              11111   1111  11


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM  185 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~  185 (205)
                      .....|+|+.+-+.   .....+++.+...++++..+.-+.....
T Consensus        59 ~~~~~dlIila~p~---~~~~~vl~~l~~~~~~~~ii~d~~s~k~  100 (171)
T d2g5ca2          59 EDFSPDFVMLSSPV---RTFREIAKKLSYILSEDATVTDQGSVKG  100 (171)
T ss_dssp             GGTCCSEEEECSCH---HHHHHHHHHHHHHSCTTCEEEECCSCCT
T ss_pred             hccccccccccCCc---hhhhhhhhhhhccccccccccccccccH
Confidence            13468999887443   4566788888888888776654444333

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.19  E-value=0.09  Score=39.14  Aligned_cols=82  Identities=21%  Similarity=0.157  Sum_probs=53.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHH-HHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNV-EWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~-~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      +++||++|=-|++.|+   ++..+++.|++|+.+|. ++-++.+.+.+ +..+             .++.....|..+.+
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g-------------~~~~~~~~Dv~~~~   72 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-------------VKTKAYQCDVSNTD   72 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT-------------CCEEEEECCTTCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC-------------CceEEEEccCCCHH
Confidence            5689999999988774   34555667999999999 55444444333 3332             35677787777665


Q ss_pred             Ccc-------cCCCCccEEEEcccccC
Q 028673          137 HIK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ...       ..-++.|+++.+--+..
T Consensus        73 ~v~~~~~~~~~~~g~iDilVnnAg~~~   99 (260)
T d1h5qa_          73 IVTKTIQQIDADLGPISGLIANAGVSV   99 (260)
T ss_dssp             HHHHHHHHHHHHSCSEEEEEECCCCCC
T ss_pred             HHHHHHHHHHHHhCCCcEecccccccc
Confidence            321       12357998887754443

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.099  Score=38.88  Aligned_cols=82  Identities=21%  Similarity=0.282  Sum_probs=54.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.++..+             .++.....|..+.+.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-------------~~~~~~~~Dvs~~~~   74 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-------------GQAFACRCDITSEQE   74 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------CcEEEEEccCCCHHH
Confidence            3589999999998774   33445566999999998 666666666665542             356777877776543


Q ss_pred             cc-------cCCCCccEEEEcccccC
Q 028673          138 IK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ..       ..-++.|+++.+--+..
T Consensus        75 ~~~~~~~~~~~~g~iDilvnnAG~~~  100 (255)
T d1fmca_          75 LSALADFAISKLGKVDILVNNAGGGG  100 (255)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEeeeCCcCCC
Confidence            21       11257898887754433

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.05  E-value=0.12  Score=38.02  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=50.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+..                +......|..+.+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~----------------~~~~~~~Dv~~~~~   64 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA----------------NGKGLMLNVTDPAS   64 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG----------------GEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC----------------CCcEEEEEecCHHH
Confidence            4589999999998874   34455567999999999 6655555443322                34566767665542


Q ss_pred             cc-------cCCCCccEEEEcccccC
Q 028673          138 IK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ..       ..-++.|+++.+--+..
T Consensus        65 v~~~~~~~~~~~g~iDilVnnAg~~~   90 (243)
T d1q7ba_          65 IESVLEKIRAEFGEVDILVNNAGITR   90 (243)
T ss_dssp             HHHHHHHHHHHTCSCSEEEECCCCCC
T ss_pred             hhhhhhhhhcccCCcceehhhhhhcc
Confidence            21       12357998887654433

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.16  Score=37.87  Aligned_cols=89  Identities=21%  Similarity=0.281  Sum_probs=54.7

Q ss_pred             CCCCCCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEee
Q 028673           56 GRFCPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD  131 (205)
Q Consensus        56 ~~~~~~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~d  131 (205)
                      ..|.+..++||++|=-|++.|+   ++..+++.|++|++++. ++.++.+...+....            ...+.....+
T Consensus         5 ~~f~~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~------------~~~~~~~~~d   72 (269)
T d1xu9a_           5 EEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG------------AASAHYIAGT   72 (269)
T ss_dssp             SCCCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------------CSEEEEEECC
T ss_pred             ccCCccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh------------cccchhhhhh
Confidence            3455677899999999999884   34455567999999999 666666655443332            1234455544


Q ss_pred             cCCCCCc-------ccCCCCccEEEEcccccC
Q 028673          132 WGNEDHI-------KAVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       132 w~~~~~~-------~~~~~~fD~Ii~~d~~y~  156 (205)
                      ..+....       ....+..|+++.+...+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~g~~~~li~nag~~~  104 (269)
T d1xu9a_          73 MEDMTFAEQFVAQAGKLMGGLDMLILNHITNT  104 (269)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEECCCCCC
T ss_pred             hhhHHHHHHHHHHHHHHhCCcccccccccccc
Confidence            4332211       111346788877655544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.01  E-value=0.23  Score=37.35  Aligned_cols=85  Identities=20%  Similarity=0.314  Sum_probs=54.1

Q ss_pred             CCCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC
Q 028673           59 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (205)
Q Consensus        59 ~~~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~  134 (205)
                      .+..++||++|=-|+..|+   ++..+++.|++|+++|. ++-++.+.+.+....            ..++.+...|..+
T Consensus        19 ~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~------------g~~~~~~~~D~~~   86 (294)
T d1w6ua_          19 PPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT------------GNKVHAIQCDVRD   86 (294)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTC
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc------------CCceEEEEecccC
Confidence            3467899999999998773   34445567999999999 555554444443221            1356677777665


Q ss_pred             CCCcc-------cCCCCccEEEEccccc
Q 028673          135 EDHIK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       135 ~~~~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      .+...       ......|+++.+--..
T Consensus        87 ~~~v~~~~~~~~~~~g~iDilvnnAg~~  114 (294)
T d1w6ua_          87 PDMVQNTVSELIKVAGHPNIVINNAAGN  114 (294)
T ss_dssp             HHHHHHHHHHHHHHTCSCSEEEECCCCC
T ss_pred             hHHHHHHhhhhhhhccccchhhhhhhhc
Confidence            54321       1246789888765443

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=92.94  E-value=0.13  Score=39.30  Aligned_cols=107  Identities=16%  Similarity=0.158  Sum_probs=67.4

Q ss_pred             eEEEeCCCccHHHHHHHH-hCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC--ccc---
Q 028673           67 RVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--IKA---  140 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a~-~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~--~~~---  140 (205)
                      .|+.||||.=.-+..+.. .+.+++=+|.|++++.-++-+..++..         ...+......|..+...  +..   
T Consensus        92 qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~---------~~~~~~~v~~Dl~~~~~~~L~~~g~  162 (297)
T d2uyoa1          92 QFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVT---------PTADRREVPIDLRQDWPPALRSAGF  162 (297)
T ss_dssp             EEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCC---------CSSEEEEEECCTTSCHHHHHHHTTC
T ss_pred             eEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCC---------CCceEEEecccccchHHHHHHhcCC
Confidence            466699996544444432 245688888899888777777766531         12345666655543211  110   


Q ss_pred             CCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673          141 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMFS  182 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~~  182 (205)
                      .....=++++-.++++  .+....+++.+..+..||+.+++-+.
T Consensus       163 d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         163 DPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             CTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            1233445666666655  55677999999999999999888764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.79  E-value=0.89  Score=31.59  Aligned_cols=98  Identities=13%  Similarity=-0.001  Sum_probs=53.2

Q ss_pred             CCCCCeEEEeCCC---ccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe---ecC
Q 028673           62 KLKGKRVIELGAG---CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL---DWG  133 (205)
Q Consensus        62 ~~~~~~VLdlGcG---tGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~---dw~  133 (205)
                      ..+|.+||=+.+|   .|..++.+|+. |++|+++-. ++-.+.....++..+..              .+...   ++.
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad--------------~vi~~~~~~~~   91 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT--------------QVITEDQNNSR   91 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS--------------EEEEHHHHHCG
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc--------------EEEeccccchh
Confidence            3457778777333   36677767754 999777643 44444444444444431              12221   111


Q ss_pred             CCCCc-----ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          134 NEDHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       134 ~~~~~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      +....     ......+|+|+-+  +-     .+.+....++++++|+++..
T Consensus        92 ~~~~~v~~~~~~~g~~vdvv~D~--vg-----~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2          92 EFGPTIKEWIKQSGGEAKLALNC--VG-----GKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             GGHHHHHHHHHHHTCCEEEEEES--SC-----HHHHHHHHHTSCTTCEEEEC
T ss_pred             HHHHHHHHHHhhccCCceEEEEC--CC-----cchhhhhhhhhcCCcEEEEE
Confidence            11100     0123568888743  32     44556777899999998765

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.60  E-value=0.11  Score=36.30  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHH
Q 028673           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKR  103 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~  103 (205)
                      ...+|.+||=+|||. |+.++.+++ .|+ +|+++|. ++-++.+++
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            355788999999986 788887776 476 6999999 666666654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.57  E-value=0.19  Score=37.36  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=53.9

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.++..+             .++.....|..+.+..
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~~~~~v   69 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG-------------VEARSYVCDVTSEEAV   69 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-------------SCEEEEECCTTCHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHHH
Confidence            589999999998874   45566677999999999 667777766665543             3577778777765432


Q ss_pred             c-------cCCCCccEEEEcc
Q 028673          139 K-------AVAPPFDYIIGTD  152 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d  152 (205)
                      .       ..-++.|+++.+-
T Consensus        70 ~~~~~~~~~~~g~iDilVnna   90 (260)
T d1zema1          70 IGTVDSVVRDFGKIDFLFNNA   90 (260)
T ss_dssp             HHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHhCCCCeehhhh
Confidence            1       1125789888653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.50  E-value=0.32  Score=33.80  Aligned_cols=42  Identities=17%  Similarity=0.183  Sum_probs=33.3

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHH
Q 028673           62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKR  103 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~  103 (205)
                      ..+|.+|+=.|||. |+.++.+++. |+ +|+++|. ++-++.+++
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~   72 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA   72 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence            44688999999985 8888877765 64 7999999 777777765

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.39  E-value=0.17  Score=37.52  Aligned_cols=82  Identities=15%  Similarity=0.183  Sum_probs=54.2

Q ss_pred             CCCCCeEEEeCCCcc---HHHHHHHHhCCEEEEEcC--cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCG---VAGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtG---l~sl~~a~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      .+.||+||=-|++.|   .++..+++.|++|+.++.  ++.++.+.+.+..++             .++.....|..+.+
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~D~~~~~   69 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG-------------AQGVAIQADISKPS   69 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC-------------CCceEecCCCCCHH
Confidence            357999999998776   344555667999888755  445677777666653             35777887777654


Q ss_pred             Ccc-------cCCCCccEEEEcccccC
Q 028673          137 HIK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ...       ...+..|+++.+--+..
T Consensus        70 ~v~~~~~~~~~~~g~idilinnag~~~   96 (259)
T d1ja9a_          70 EVVALFDKAVSHFGGLDFVMSNSGMEV   96 (259)
T ss_dssp             HHHHHHHHHHHHHSCEEEEECCCCCCC
T ss_pred             HHHHHHHHHHHHcCCCcEEEecccccc
Confidence            321       12357888887755544

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.072  Score=37.53  Aligned_cols=42  Identities=26%  Similarity=0.300  Sum_probs=26.9

Q ss_pred             CCCCCCeEEEeCCCc-cH-HHHHHHHhCC-EEEEEcC-cchHHHHH
Q 028673           61 SKLKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQ-IEVLPLLK  102 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt-Gl-~sl~~a~~g~-~v~~~D~-~~~l~~~~  102 (205)
                      .++++++||=||||- |. +...+.+.|. +++.++. ++.++.+.
T Consensus        14 ~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~   59 (182)
T d1vi2a1          14 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKAL   59 (182)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHH
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHH
Confidence            356889999999983 32 2233345566 4888887 55444443

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.25  E-value=0.14  Score=36.46  Aligned_cols=43  Identities=30%  Similarity=0.367  Sum_probs=33.9

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHh
Q 028673           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (205)
Q Consensus        66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (205)
                      ++|-=+|+|+ | -++..++..|.+|+..|. ++.++.+.+.++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~   50 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEES   50 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHH
Confidence            5788899987 4 446667788999999999 77888887777654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.19  E-value=1.1  Score=30.53  Aligned_cols=95  Identities=12%  Similarity=0.084  Sum_probs=53.6

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           61 SKLKGKRVIELGAGC-GVAGFGMAL-LG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt-Gl~sl~~a~-~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      ...+|.+||=+|||- |...+.+++ .| ++|+++|. ++-.+.+++.    +.              ..+  .+..+.+
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga--------------~~~--i~~~~~~   84 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GA--------------TEC--VNPQDYK   84 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC--------------SEE--ECGGGCS
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CC--------------eeE--EecCCch
Confidence            355788999999974 444444444 45 47999999 6655555542    22              111  1122211


Q ss_pred             C-c-----ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCC-cEEEEEE
Q 028673          137 H-I-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILVMF  181 (205)
Q Consensus       137 ~-~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~i~~  181 (205)
                      + .     ......+|+|+-+      .-.+...+....+++++ |.+++..
T Consensus        85 ~~~~~~~~~~~~~G~D~vid~------~G~~~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          85 KPIQEVLTEMSNGGVDFSFEV------IGRLDTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             SCHHHHHHHHTTSCBSEEEEC------SCCHHHHHHHHHHBCTTTCEEEECS
T ss_pred             hHHHHHHHHHhcCCCCEEEec------CCchhHHHHHHHHHhcCCcceEEec
Confidence            1 1     0123468888765      34456667676777765 4555443

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.06  E-value=0.12  Score=38.52  Aligned_cols=79  Identities=22%  Similarity=0.150  Sum_probs=51.1

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+   ..             ..++.+...|..+.++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~---~~-------------~~~~~~~~~Dv~~~~~   65 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR---EL-------------GDAARYQHLDVTIEED   65 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TT-------------GGGEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---Hh-------------CCceEEEEcccCCHHH
Confidence            5689999999998874   35555667999999999 554333322   11             1356778877776543


Q ss_pred             cc-------cCCCCccEEEEcccccC
Q 028673          138 IK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ..       ..-++.|++|.+--+..
T Consensus        66 v~~~~~~~~~~~g~iDilVnnAg~~~   91 (254)
T d1hdca_          66 WQRVVAYAREEFGSVDGLVNNAGIST   91 (254)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCccEEEecCcccc
Confidence            21       11257898877654443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.97  E-value=0.24  Score=37.00  Aligned_cols=80  Identities=21%  Similarity=0.197  Sum_probs=55.2

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.++..+.          ...++.....|..+.+..
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~----------~~~~~~~~~~Dvs~~~~v   72 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV----------SEKQVNSVVADVTTEDGQ   72 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----------CCCceEEEEccCCCHHHH
Confidence            589999999998874   34555677999999999 6677777766665432          123577888887765432


Q ss_pred             c-------cCCCCccEEEEcc
Q 028673          139 K-------AVAPPFDYIIGTD  152 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d  152 (205)
                      .       ..-++.|+++.+-
T Consensus        73 ~~~~~~~~~~~g~iDilvnnA   93 (272)
T d1xkqa_          73 DQIINSTLKQFGKIDVLVNNA   93 (272)
T ss_dssp             HHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHhCCceEEEeCC
Confidence            1       1125789888763

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.89  E-value=0.25  Score=36.91  Aligned_cols=80  Identities=24%  Similarity=0.212  Sum_probs=55.5

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.+...+.          ...++.....|..+.+..
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~----------~~~~~~~~~~Dv~~~~~v   71 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV----------PAEKINAVVADVTEASGQ   71 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC----------CCcceEEEEeeCCCHHHH
Confidence            479999999998874   34555667999999999 6677777777766532          123577888887776432


Q ss_pred             c-------cCCCCccEEEEcc
Q 028673          139 K-------AVAPPFDYIIGTD  152 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d  152 (205)
                      .       ..-++.|+++.+-
T Consensus        72 ~~~~~~~~~~~G~iDilVnnA   92 (274)
T d1xhla_          72 DDIINTTLAKFGKIDILVNNA   92 (274)
T ss_dssp             HHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHcCCceEEEeec
Confidence            1       1125789888763

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.56  E-value=0.22  Score=37.03  Aligned_cols=78  Identities=19%  Similarity=0.221  Sum_probs=50.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...              ..+.+...|..+.++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--------------~~~~~~~~Dv~~~~~   68 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP--------------DVISFVHCDVTKDED   68 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--------------TTEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC--------------CceEEEEccCCCHHH
Confidence            4689999999998874   23445566999999999 55555554443222              346677777776543


Q ss_pred             cc-------cCCCCccEEEEccc
Q 028673          138 IK-------AVAPPFDYIIGTDV  153 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~  153 (205)
                      ..       ..-++.|+++.+--
T Consensus        69 v~~~~~~~~~~~g~iD~lVnnAG   91 (268)
T d2bgka1          69 VRNLVDTTIAKHGKLDIMFGNVG   91 (268)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCcceeccccc
Confidence            21       11257898886543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.51  E-value=0.12  Score=38.19  Aligned_cols=79  Identities=18%  Similarity=0.189  Sum_probs=51.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.+.                .++.+...|..+.+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~Dv~~~~~   66 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA----------------DAARYVHLDVTQPAQ   66 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG----------------GGEEEEECCTTCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh----------------CcceEEEeecCCHHH
Confidence            4589999999998874   44555677999999999 655554443322                245677777766543


Q ss_pred             cc-------cCCCCccEEEEcccccC
Q 028673          138 IK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ..       ..-++.|+++.+--+..
T Consensus        67 v~~~~~~~~~~~g~idilinnAG~~~   92 (244)
T d1nffa_          67 WKAAVDTAVTAFGGLHVLVNNAGILN   92 (244)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHhCCCeEEEECCcccC
Confidence            21       11257898887654443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.50  E-value=0.47  Score=34.93  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=49.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+.                .+..+...|..+.+.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~----------------~~~~~~~~Dv~~~~~   66 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG----------------ERSMFVRHDVSSEAD   66 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC----------------TTEEEECCCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC----------------CCeEEEEeecCCHHH
Confidence            4689999999988773   34455567999999999 555554443321                234555666555432


Q ss_pred             cc-------cCCCCccEEEEcccccC
Q 028673          138 IK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ..       ..-++.|+++.+--+..
T Consensus        67 ~~~~~~~~~~~~g~iDilVnnAG~~~   92 (253)
T d1hxha_          67 WTLVMAAVQRRLGTLNVLVNNAGILL   92 (253)
T ss_dssp             HHHHHHHHHHHHCSCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHhCCCCeEEecccccC
Confidence            21       11257898887755543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.45  E-value=0.3  Score=36.19  Aligned_cols=80  Identities=16%  Similarity=0.150  Sum_probs=54.4

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++||.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+.          ...++.....|..+.+..
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~----------~~~~~~~~~~Dvt~~~~v   72 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV----------SEQNVNSVVADVTTDAGQ   72 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----------CcCceEEEEccCCCHHHH
Confidence            589999999998774   34455667999999999 6677777766665432          123577888777765432


Q ss_pred             c-------cCCCCccEEEEcc
Q 028673          139 K-------AVAPPFDYIIGTD  152 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d  152 (205)
                      .       ..-++.|+++.+-
T Consensus        73 ~~~~~~~~~~~g~iDilvnnA   93 (264)
T d1spxa_          73 DEILSTTLGKFGKLDILVNNA   93 (264)
T ss_dssp             HHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHhCCCCEeeccc
Confidence            1       1125789887663

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.27  E-value=0.16  Score=37.87  Aligned_cols=82  Identities=20%  Similarity=0.180  Sum_probs=54.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cc-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~  136 (205)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. ++ .++.+.+.++..+             .++.....|..+.+
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g-------------~~~~~~~~Dvt~~~   70 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-------------GEAIAVKGDVTVES   70 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CEEEEEECCTTSHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHH
Confidence            5789999999998874   34455567999999997 43 5566666555543             35677777777654


Q ss_pred             Ccc-------cCCCCccEEEEcccccC
Q 028673          137 HIK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       137 ~~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ...       ..-++.|+++.+--+..
T Consensus        71 ~v~~~~~~~~~~~G~iDiLVnnAG~~~   97 (261)
T d1geea_          71 DVINLVQSAIKEFGKLDVMINNAGLEN   97 (261)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHhCCCCEeeccceecC
Confidence            321       11257898887754443

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.20  E-value=0.32  Score=37.98  Aligned_cols=40  Identities=23%  Similarity=0.197  Sum_probs=26.7

Q ss_pred             CCeEEEeCCCccHHHHHHHHh---------CCEEEEEcCcchHHHHHHH
Q 028673           65 GKRVIELGAGCGVAGFGMALL---------GCNVITTDQIEVLPLLKRN  104 (205)
Q Consensus        65 ~~~VLdlGcGtGl~sl~~a~~---------g~~v~~~D~~~~l~~~~~n  104 (205)
                      ..+|+|+|+|+|.++.-+...         ..+++.+|.+..+...+++
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~  128 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT  128 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHH
Confidence            357999999999876644332         2258899985555544443

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.96  E-value=0.21  Score=36.68  Aligned_cols=77  Identities=22%  Similarity=0.341  Sum_probs=48.0

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.   .              ..+.....|..+.+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~---~--------------~~~~~~~~Dv~~~~~   64 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE---C--------------PGIEPVCVDLGDWDA   64 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---S--------------TTCEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh---c--------------CCCeEEEEeCCCHHH
Confidence            3689999999998874   34455667999999998 5443333221   1              135566666665532


Q ss_pred             cc---cCCCCccEEEEccccc
Q 028673          138 IK---AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~---~~~~~fD~Ii~~d~~y  155 (205)
                      ..   ..-++.|+++.+--+.
T Consensus        65 v~~~~~~~g~iDilVnnAg~~   85 (242)
T d1cyda_          65 TEKALGGIGPVDLLVNNAALV   85 (242)
T ss_dssp             HHHHHTTCCCCSEEEECCCCC
T ss_pred             HHHHHHHcCCCeEEEECCccc
Confidence            21   1235789888764443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.91  E-value=0.27  Score=36.38  Aligned_cols=81  Identities=12%  Similarity=0.186  Sum_probs=53.2

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-c-chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. + +.++.+...+....            ..++.+...|..+.++
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~------------g~~~~~~~~Dv~~~~~   69 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH------------GVKVLYDGADLSKGEA   69 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH------------TSCEEEECCCTTSHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc------------CCcEEEEECCCCCHHH
Confidence            478999999998875   44556677999999998 4 35566655554332            1356777877776543


Q ss_pred             cc-------cCCCCccEEEEccccc
Q 028673          138 IK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      ..       ..-++.|++|.+--+.
T Consensus        70 v~~~~~~~~~~~G~iDiLVnnAG~~   94 (260)
T d1x1ta1          70 VRGLVDNAVRQMGRIDILVNNAGIQ   94 (260)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCcEEEeecccc
Confidence            21       1125789888764443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.83  E-value=0.15  Score=35.99  Aligned_cols=43  Identities=21%  Similarity=0.160  Sum_probs=31.5

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHh
Q 028673           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (205)
Q Consensus        66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (205)
                      ++|-=+|+|+ | -++..++..|.+|+..|. ++.++.+...+..+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~   50 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL   50 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhh
Confidence            4678899986 4 234566677999999999 77877777666544

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=90.76  E-value=1.1  Score=32.61  Aligned_cols=78  Identities=19%  Similarity=0.138  Sum_probs=49.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++||++|=.|++.|+   ++..+++.|++|++++. .+.++...   +..             ..++.+...|..+.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~---~~~-------------~~~~~~~~~Dls~~~~   65 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAV---AAL-------------EAEAIAVVADVSDPKA   65 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH---HTC-------------CSSEEEEECCTTSHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH---HHc-------------CCceEEEEecCCCHHH
Confidence            3589999999999875   33444566999999998 44333222   221             2456777777766543


Q ss_pred             cc-------cCCCCccEEEEccccc
Q 028673          138 IK-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y  155 (205)
                      ..       ..-++.|+++.+-...
T Consensus        66 i~~~~~~i~~~~g~iDiLinnAg~~   90 (241)
T d2a4ka1          66 VEAVFAEALEEFGRLHGVAHFAGVA   90 (241)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEGGGGT
T ss_pred             HHHHHHHHHHHhCCccEeccccccc
Confidence            31       1125789888875443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=90.55  E-value=0.26  Score=39.09  Aligned_cols=46  Identities=17%  Similarity=0.144  Sum_probs=38.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh----CCEEEEEcC-cchHHHHHHHHHHhh
Q 028673           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNT  109 (205)
Q Consensus        64 ~~~~VLdlGcGtGl~sl~~a~~----g~~v~~~D~-~~~l~~~~~n~~~n~  109 (205)
                      ++..++|+||-.|..+..+++.    +.+|+++|- +...+.+++|++.|.
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            4568999999999888766643    347999999 889999999998874

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.35  E-value=0.43  Score=32.84  Aligned_cols=91  Identities=16%  Similarity=0.192  Sum_probs=54.6

Q ss_pred             CCCCCeEEEeCC-Cc-cHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGA-GC-GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGc-Gt-Gl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      ..+|++||=.|+ |. |..++.+++. |++|++++. ++-.+.+++    .+.             . .+.  +..+...
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa-------------~-~~i--~~~~~~~   84 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGA-------------E-EAA--TYAEVPE   84 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTC-------------S-EEE--EGGGHHH
T ss_pred             CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----ccc-------------c-eee--ehhhhhh
Confidence            457889999995 43 7777777765 889999987 665555543    222             0 111  2222111


Q ss_pred             cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                      .......+|+|+-.  .-  +    .+....++++++|+++..
T Consensus        85 ~~~~~~g~D~v~d~--~G--~----~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          85 RAKAWGGLDLVLEV--RG--K----EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             HHHHTTSEEEEEEC--SC--T----THHHHHTTEEEEEEEEEC
T ss_pred             hhhccccccccccc--cc--h----hHHHHHHHHhcCCcEEEE
Confidence            11124569988753  21  2    245566789999998765

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.07  E-value=0.36  Score=35.39  Aligned_cols=78  Identities=26%  Similarity=0.380  Sum_probs=49.0

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.   .              ..+.....|..+.+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~---~--------------~~~~~~~~Dv~d~~~   66 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE---C--------------PGIEPVCVDLGDWEA   66 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---S--------------TTCEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh---c--------------CCCeEEEEeCCCHHH
Confidence            4689999999998874   34455567999999999 5544433321   1              134566666665432


Q ss_pred             cc---cCCCCccEEEEcccccC
Q 028673          138 IK---AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       138 ~~---~~~~~fD~Ii~~d~~y~  156 (205)
                      ..   ..-++.|+++.+--+..
T Consensus        67 v~~~~~~~g~iDilVnnAg~~~   88 (244)
T d1pr9a_          67 TERALGSVGPVDLLVNNAAVAL   88 (244)
T ss_dssp             HHHHHTTCCCCCEEEECCCCCC
T ss_pred             HHHHHHHhCCceEEEecccccc
Confidence            21   12357998887654443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.02  E-value=0.38  Score=35.42  Aligned_cols=77  Identities=14%  Similarity=0.102  Sum_probs=51.9

Q ss_pred             CCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc-
Q 028673           65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-  139 (205)
Q Consensus        65 ~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~-  139 (205)
                      ||.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.++..+             .++.....|..+.+... 
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-------------~~~~~~~~Dvs~~~~v~~   68 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG-------------VEADGRTCDVRSVPEIEA   68 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeecCCHHHHHH
Confidence            5677888987774   34555667999999999 666776666665543             35777887777664321 


Q ss_pred             ------cCCCCccEEEEcccc
Q 028673          140 ------AVAPPFDYIIGTDVV  154 (205)
Q Consensus       140 ------~~~~~fD~Ii~~d~~  154 (205)
                            ..-++.|++|.+--+
T Consensus        69 ~~~~~~~~~g~iDilVnnAG~   89 (257)
T d2rhca1          69 LVAAVVERYGPVDVLVNNAGR   89 (257)
T ss_dssp             HHHHHHHHTCSCSEEEECCCC
T ss_pred             HHHHHHHHhCCCCEEEecccc
Confidence                  123578988866433

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.92  E-value=0.34  Score=35.67  Aligned_cols=81  Identities=21%  Similarity=0.229  Sum_probs=53.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+..              ..++.+...|..+.+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~~~~~   68 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--------------PDQIQFFQHDSSDEDG   68 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--------------TTTEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC--------------CCcEEEEEccCCCHHH
Confidence            3689999999998774   34555667999999999 6666555554322              2357778877776543


Q ss_pred             cc-------cCCCCccEEEEcccccC
Q 028673          138 IK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ..       ..-++.|++|.+--+..
T Consensus        69 v~~~~~~~~~~~G~iDiLVnnAg~~~   94 (251)
T d1zk4a1          69 WTKLFDATEKAFGPVSTLVNNAGIAV   94 (251)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHhCCceEEEecccccc
Confidence            21       11257898887654433

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=0.15  Score=31.65  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=25.3

Q ss_pred             CCCCCeEEEeCCC-ccHH-HHHHHHhCCEEEEEcC
Q 028673           62 KLKGKRVIELGAG-CGVA-GFGMALLGCNVITTDQ   94 (205)
Q Consensus        62 ~~~~~~VLdlGcG-tGl~-sl~~a~~g~~v~~~D~   94 (205)
                      +++|++|+=+|-| ||.. +-++++.|++|++.|.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~   36 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDT   36 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeC
Confidence            5689999999998 5643 3345567999999997

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.73  E-value=2.1  Score=29.51  Aligned_cols=92  Identities=16%  Similarity=0.131  Sum_probs=54.5

Q ss_pred             CCCeEEEeCC--CccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673           64 KGKRVIELGA--GCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (205)
Q Consensus        64 ~~~~VLdlGc--GtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~  139 (205)
                      ++.+||=.|+  |.|..++.+|+. |++|+++.- ++-.+.++.    .+.              -.+...+-.+.. ..
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~----lGa--------------d~vi~~~~~~~~-~~   91 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS----LGA--------------SRVLPRDEFAES-RP   91 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH----HTE--------------EEEEEGGGSSSC-CS
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHh----hcc--------------ccccccccHHHH-HH
Confidence            3457777765  356777777764 899999887 665554443    232              122222211111 11


Q ss_pred             cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .....+|.|+  |++.     ...+....+.++++|+++..-
T Consensus        92 l~~~~~~~vv--D~Vg-----g~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2          92 LEKQVWAGAI--DTVG-----DKVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             SCCCCEEEEE--ESSC-----HHHHHHHHHTEEEEEEEEECC
T ss_pred             HHhhcCCeeE--EEcc-----hHHHHHHHHHhccccceEeec
Confidence            1245678775  4443     456778888899999988764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=89.72  E-value=1.1  Score=29.91  Aligned_cols=93  Identities=17%  Similarity=0.120  Sum_probs=54.1

Q ss_pred             eEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673           67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (205)
Q Consensus        67 ~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~  143 (205)
                      +|+=+|+|. | +++..+++.|.+|++++. ++-.+.      .+..         ................    ....
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~------~~~~---------~~~~~~~~~~~~~~~~----~~~~   62 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCS------VNLV---------ETDGSIFNESLTANDP----DFLA   62 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEE------EEEE---------CTTSCEEEEEEEESCH----HHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhh------hccc---------cCCccccccccccchh----hhhc
Confidence            678899986 3 667777788999999987 431110      0000         0000111111111111    1134


Q ss_pred             CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673          144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF  181 (205)
Q Consensus       144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~  181 (205)
                      .+|+|+.+=   .....+.+++.+..+++++..++...
T Consensus        63 ~~D~iii~v---ka~~~~~~~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          63 TSDLLLVTL---KAWQVSDAVKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             TCSEEEECS---CGGGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred             ccceEEEee---cccchHHHHHhhccccCcccEEeecc
Confidence            799998873   33467888999999998888766654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.53  E-value=0.16  Score=37.72  Aligned_cols=78  Identities=18%  Similarity=0.268  Sum_probs=50.8

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+  +              .++.....|..+.+..
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~--~--------------~~~~~~~~Dvt~~~~v   66 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI--G--------------PAACAIALDVTDQASI   66 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH--C--------------TTEEEEECCTTCHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--C--------------CceEEEEeeCCCHHHH
Confidence            578999999998874   34455567999999999 55444443322  1              2466777777765432


Q ss_pred             c-------cCCCCccEEEEcccccC
Q 028673          139 K-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      .       ..-++.|+++.+--++.
T Consensus        67 ~~~~~~~~~~~g~iDilVnnAg~~~   91 (256)
T d1k2wa_          67 DRCVAELLDRWGSIDILVNNAALFD   91 (256)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHhCCccEEEeeccccc
Confidence            1       11257898887755544

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.53  E-value=0.57  Score=34.41  Aligned_cols=75  Identities=21%  Similarity=0.276  Sum_probs=49.4

Q ss_pred             eEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc---
Q 028673           67 RVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK---  139 (205)
Q Consensus        67 ~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~---  139 (205)
                      .+|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+             .++.....|..+.+...   
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g-------------~~~~~~~~Dv~~~~~v~~~~   69 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-------------GHAVAVKVDVSDRDQVFAAV   69 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHHHHHHH
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHHHHHHH
Confidence            45777887763   34455667999999999 666776666665543             35777787777654321   


Q ss_pred             ----cCCCCccEEEEcccc
Q 028673          140 ----AVAPPFDYIIGTDVV  154 (205)
Q Consensus       140 ----~~~~~fD~Ii~~d~~  154 (205)
                          ..-++.|+++.+--+
T Consensus        70 ~~~~~~~g~iDilVnnAG~   88 (255)
T d1gega_          70 EQARKTLGGFDVIVNNAGV   88 (255)
T ss_dssp             HHHHHHTTCCCEEEECCCC
T ss_pred             HHHHHHhCCccEEEecccc
Confidence                123579988866433

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.42  E-value=0.89  Score=33.33  Aligned_cols=90  Identities=18%  Similarity=0.096  Sum_probs=52.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEE-cCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITT-DQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-  136 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~-D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-  136 (205)
                      +++||+||=-|++.|+   ++..+++.|++|+.+ +..+-.+.+.+-...+.            ..++.+...|..... 
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~d~~~~~~   69 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINP------------KVNITFHTYDVTVPVA   69 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCT------------TSEEEEEECCTTSCHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCC------------CCCEEEEEeecCCCHH
Confidence            4689999999998885   244445669986666 44432332222222221            235667776665332 


Q ss_pred             Cc-------ccCCCCccEEEEcccccCCcChHhH
Q 028673          137 HI-------KAVAPPFDYIIGTDVVYAEHLLEPL  163 (205)
Q Consensus       137 ~~-------~~~~~~fD~Ii~~d~~y~~~~~~~l  163 (205)
                      +.       ....++.|++|.+--....+.++..
T Consensus        70 ~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~  103 (254)
T d1sbya1          70 ESKKLLKKIFDQLKTVDILINGAGILDDHQIERT  103 (254)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCCCCCCHHHHHHH
Confidence            11       1113589999988777777766643

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=87.84  E-value=0.69  Score=33.81  Aligned_cols=80  Identities=16%  Similarity=0.241  Sum_probs=51.0

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++||.+|=-|++.|+   ++..+++.|++|+++|. ++  +.++..++..             ..++.....|..+.+.
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~~-------------g~~~~~~~~Dvs~~~~   66 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNL-------------GRRVLTVKCDVSQPGD   66 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHT-------------TCCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch--HHHHHHHHHc-------------CCcEEEEEeeCCCHHH
Confidence            3589999999998774   34555667999999998 43  2233333333             2357777877776543


Q ss_pred             cc-------cCCCCccEEEEcccccC
Q 028673          138 IK-------AVAPPFDYIIGTDVVYA  156 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~~y~  156 (205)
                      ..       ..-++.|+++.|--++.
T Consensus        67 v~~~~~~~~~~~G~iDilVnnAG~~~   92 (247)
T d2ew8a1          67 VEAFGKQVISTFGRCDILVNNAGIYP   92 (247)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            21       11257998887654444

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.17  E-value=1.3  Score=28.69  Aligned_cols=87  Identities=14%  Similarity=0.145  Sum_probs=46.8

Q ss_pred             eEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc-
Q 028673           67 RVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-  140 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~-  140 (205)
                      +|+=+|+|  ..|..++    ..|.+|+.+|. ++.++.++..   .               .+.+...|-.+.+.+.. 
T Consensus         2 ~IvI~G~G--~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~---------------~~~vi~Gd~~~~~~l~~~   61 (132)
T d1lssa_           2 YIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I---------------DALVINGDCTKIKTLEDA   61 (132)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C---------------SSEEEESCTTSHHHHHHT
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---h---------------hhhhccCcccchhhhhhc
Confidence            46666665  5555555    45889999999 7766654431   1               23566655444432221 


Q ss_pred             CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcE
Q 028673          141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT  176 (205)
Q Consensus       141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~  176 (205)
                      .-...|.+++.   -..+....+.....+.+++...
T Consensus        62 ~i~~a~~vv~~---t~~d~~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          62 GIEDADMYIAV---TGKEEVNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             TTTTCSEEEEC---CSCHHHHHHHHHHHHHTTCCCE
T ss_pred             Chhhhhhhccc---CCcHHHHHHHHHHHHHcCCceE
Confidence            23578888874   1112222333334455666643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.77  E-value=0.33  Score=30.32  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=26.1

Q ss_pred             CCCCCCCeEEEeCC-CccHHH--HHHHHhCCEEEEEcC
Q 028673           60 PSKLKGKRVIELGA-GCGVAG--FGMALLGCNVITTDQ   94 (205)
Q Consensus        60 ~~~~~~~~VLdlGc-GtGl~s--l~~a~~g~~v~~~D~   94 (205)
                      |...+.++|.=+|. |+|..+  ..+..+|.+|++.|.
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~   40 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDI   40 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEES
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeC
Confidence            34456678888886 567554  566678999999998

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.55  E-value=1.8  Score=29.25  Aligned_cols=43  Identities=21%  Similarity=0.243  Sum_probs=29.5

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHH
Q 028673           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKR  103 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~  103 (205)
                      ...+|.+|+=+|||. |+.++.+++ .++ +|+++|. ++-++.+++
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            345788999999987 555554444 455 6999999 665655553

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=86.35  E-value=1.1  Score=33.19  Aligned_cols=74  Identities=23%  Similarity=0.245  Sum_probs=47.3

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.   .+             .++.....|..+.+..
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~---~~-------------~~~~~~~~Dv~~~~~~   66 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETD---HG-------------DNVLGIVGDVRSLEDQ   66 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---HG-------------GGEEEEECCTTCHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---cC-------------CCeeEEecccccHHHH
Confidence            479999999998774   34455567999999999 5555444332   21             2466777776665432


Q ss_pred             c-------cCCCCccEEEEcc
Q 028673          139 K-------AVAPPFDYIIGTD  152 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d  152 (205)
                      .       ..-++.|+++.+-
T Consensus        67 ~~~~~~~~~~~g~idilvnnA   87 (276)
T d1bdba_          67 KQAASRCVARFGKIDTLIPNA   87 (276)
T ss_dssp             HHHHHHHHHHHSCCCEEECCC
T ss_pred             HHHHHHHHHHhCCcccccccc
Confidence            1       1125788887654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.22  E-value=1  Score=33.21  Aligned_cols=78  Identities=15%  Similarity=0.147  Sum_probs=50.1

Q ss_pred             CCeE-EEeCCCccH---HHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673           65 GKRV-IELGAGCGV---AGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (205)
Q Consensus        65 ~~~V-LdlGcGtGl---~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~  138 (205)
                      |++| |==|++.|+   ++..+++. |++|+.++. ++-++.+.+.++..+             .++.+..+|..+.+..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dvs~~~sv   68 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-------------LSPRFHQLDIDDLQSI   68 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-------------CCCEEEECCTTCHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEEecCCHHHH
Confidence            6777 566777664   23344555 789999998 666666666665543             3577888887776432


Q ss_pred             c-------cCCCCccEEEEccccc
Q 028673          139 K-------AVAPPFDYIIGTDVVY  155 (205)
Q Consensus       139 ~-------~~~~~fD~Ii~~d~~y  155 (205)
                      .       ..-++.|++|.|-=+.
T Consensus        69 ~~~~~~~~~~~g~iDiLVnNAGi~   92 (275)
T d1wmaa1          69 RALRDFLRKEYGGLDVLVNNAGIA   92 (275)
T ss_dssp             HHHHHHHHHHHSSEEEEEECCCCC
T ss_pred             HHHHHHHHHhcCCcEEEEEcCCcC
Confidence            1       1235799998875443

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=85.38  E-value=1.1  Score=32.53  Aligned_cols=47  Identities=19%  Similarity=0.159  Sum_probs=34.5

Q ss_pred             CCCCCeEEEeCCCc--cH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHh
Q 028673           62 KLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (205)
Q Consensus        62 ~~~~~~VLdlGcGt--Gl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (205)
                      .++||+||=-|++.  |+   ++..+++.|++|+++|. ++..+.+++.....
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~   54 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL   54 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhc
Confidence            35899999999865  64   55677788999999999 56666665554444

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.02  E-value=2.9  Score=26.14  Aligned_cols=33  Identities=12%  Similarity=0.192  Sum_probs=22.7

Q ss_pred             CCCCCeEEEeCCCc-cHH-HHHHHHhCCEEEEEcC
Q 028673           62 KLKGKRVIELGAGC-GVA-GFGMALLGCNVITTDQ   94 (205)
Q Consensus        62 ~~~~~~VLdlGcGt-Gl~-sl~~a~~g~~v~~~D~   94 (205)
                      +++|++||=+|.|. |.- ...+.+.|++|+.++.
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            56899999999985 321 2233355899877765

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.65  E-value=0.95  Score=33.15  Aligned_cols=75  Identities=20%  Similarity=0.235  Sum_probs=48.1

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~  137 (205)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+..                 .++.....|..+.+.
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~-----------------~~~~~~~~Dvs~~~~   65 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----------------PGAVFILCDVTQEDD   65 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------------TTEEEEECCTTSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----------------CCCeEEEccCCCHHH
Confidence            4689999999998874   34455567999999999 55554443321                 235666766665543


Q ss_pred             cc-------cCCCCccEEEEccc
Q 028673          138 IK-------AVAPPFDYIIGTDV  153 (205)
Q Consensus       138 ~~-------~~~~~fD~Ii~~d~  153 (205)
                      ..       ..-++.|+++.+--
T Consensus        66 v~~~~~~~~~~~g~iDilVnnAG   88 (250)
T d1ydea1          66 VKTLVSETIRRFGRLDCVVNNAG   88 (250)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHhcCCCCEEEeccc
Confidence            21       11257898887643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.49  E-value=2.5  Score=30.50  Aligned_cols=77  Identities=17%  Similarity=0.233  Sum_probs=47.8

Q ss_pred             CCCCCeEEEeCCCc--c---HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673           62 KLKGKRVIELGAGC--G---VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (205)
Q Consensus        62 ~~~~~~VLdlGcGt--G---l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~  135 (205)
                      +++||++|=-|++.  |   .++..+++.|++|+.+|. ++..+.+++.....              .+..+...|..+.
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~   70 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL--------------GGALLFRADVTQD   70 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT--------------TCCEEEECCTTCH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhcc--------------CcccccccccCCH
Confidence            57899999999743  4   345566677999999998 55555554443333              2345666666655


Q ss_pred             CCcc-------cCCCCccEEEEcc
Q 028673          136 DHIK-------AVAPPFDYIIGTD  152 (205)
Q Consensus       136 ~~~~-------~~~~~fD~Ii~~d  152 (205)
                      ++..       ..-++.|+++.+-
T Consensus        71 ~~v~~~~~~~~~~~g~iDilVnna   94 (256)
T d1ulua_          71 EELDALFAGVKEAFGGLDYLVHAI   94 (256)
T ss_dssp             HHHHHHHHHHHHHHSSEEEEEECC
T ss_pred             HHHHHHHHHHHHhcCCceEEEecc
Confidence            3221       1125788777553

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=84.35  E-value=0.86  Score=29.56  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=21.8

Q ss_pred             eEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHH
Q 028673           67 RVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLL  101 (205)
Q Consensus        67 ~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~  101 (205)
                      +++=+|+|  .+|..++    +.|.+|+++|. ++.++.+
T Consensus         2 ~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~   39 (134)
T d2hmva1           2 QFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAY   39 (134)
T ss_dssp             CEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHT
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHH
Confidence            45555665  5555554    45889999999 6665544

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.14  E-value=1  Score=32.56  Aligned_cols=42  Identities=14%  Similarity=0.132  Sum_probs=30.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHH
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKR  103 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~  103 (205)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   47 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK   47 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            4589999999999874   34555667999999998 554444433

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=83.83  E-value=3  Score=28.20  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=24.0

Q ss_pred             CCCCCCeEEEeCCCc-cHH-HHHHHHhCCEEEEEcC
Q 028673           61 SKLKGKRVIELGAGC-GVA-GFGMALLGCNVITTDQ   94 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt-Gl~-sl~~a~~g~~v~~~D~   94 (205)
                      ...+|++||=||||- +.. ...+++.|.+|+.+..
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nR   49 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNR   49 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccc
Confidence            456899999999984 422 2334466888888877

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.38  E-value=0.37  Score=29.71  Aligned_cols=22  Identities=18%  Similarity=0.265  Sum_probs=16.2

Q ss_pred             CCccHHH--HHHHHhCCEEEEEcC
Q 028673           73 AGCGVAG--FGMALLGCNVITTDQ   94 (205)
Q Consensus        73 cGtGl~s--l~~a~~g~~v~~~D~   94 (205)
                      ||+|..+  ..+..+|.+|++.|.
T Consensus        10 gG~GMs~LA~~L~~~G~~VsGSD~   33 (89)
T d1j6ua1          10 GGIGMSAVALHEFSNGNDVYGSNI   33 (89)
T ss_dssp             TSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CHHHHHHHHHHHHhCCCeEEEEeC
Confidence            3566544  455677999999999

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.19  E-value=0.48  Score=33.07  Aligned_cols=90  Identities=20%  Similarity=0.250  Sum_probs=52.2

Q ss_pred             CCeEEEeCC-C-ccHHHHHHHH-hCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-
Q 028673           65 GKRVIELGA-G-CGVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  138 (205)
Q Consensus        65 ~~~VLdlGc-G-tGl~sl~~a~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-  138 (205)
                      +.+||=.|+ | .|..++.+|+ .|++ |++++- ++-...+.+   ..+.              -.+..  ..+.+.. 
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~---~~ga--------------d~vi~--~~~~~~~~   91 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTS---ELGF--------------DAAVN--YKTGNVAE   91 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHH---HSCC--------------SEEEE--TTSSCHHH
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhh---cccc--------------eEEee--ccchhHHH
Confidence            367999884 4 5999999998 4775 666655 443222221   2221              12222  1222110 


Q ss_pred             ---ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673          139 ---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM  180 (205)
Q Consensus       139 ---~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~  180 (205)
                         ...+..+|+|+-+  +     -.+.++...+.++++|+++..
T Consensus        92 ~~~~~~~~GvDvv~D~--v-----Gg~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          92 QLREACPGGVDVYFDN--V-----GGDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHHHHCTTCEEEEEES--S-----CHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHhccCceEEEec--C-----CchhHHHHhhhccccccEEEe
Confidence               0123568988754  3     245677888889999998765

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=83.14  E-value=1.2  Score=32.55  Aligned_cols=38  Identities=26%  Similarity=0.231  Sum_probs=28.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHH
Q 028673           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLP   99 (205)
Q Consensus        62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~   99 (205)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++..+
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~   43 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE   43 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4589999999988774   34455567999999999 66544

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=82.87  E-value=4.9  Score=27.19  Aligned_cols=45  Identities=16%  Similarity=0.134  Sum_probs=27.3

Q ss_pred             CCCCCCeEEEeCCCc-cHHHH-HHHHhCCEEEEEcC-cchHHHHHHHH
Q 028673           61 SKLKGKRVIELGAGC-GVAGF-GMALLGCNVITTDQ-IEVLPLLKRNV  105 (205)
Q Consensus        61 ~~~~~~~VLdlGcGt-Gl~sl-~~a~~g~~v~~~D~-~~~l~~~~~n~  105 (205)
                      ..+++++||=+|||- +...+ .+.+.+.+|+.+.. .+-.+...+++
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~   61 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERF   61 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHH
Confidence            356889999999984 43222 22344567888887 44444444433

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=82.03  E-value=1.2  Score=30.61  Aligned_cols=92  Identities=14%  Similarity=0.106  Sum_probs=44.8

Q ss_pred             EEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673           68 VIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (205)
Q Consensus        68 VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~  144 (205)
                      |==+|+|. | .++..+++.|.+|++.|. ++.++.+..+-....              .... .   ............
T Consensus         5 Ig~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~--------------~~~~-a---~~~~~~~~~~~~   66 (176)
T d2pgda2           5 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT--------------KVLG-A---HSLEEMVSKLKK   66 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTS--------------SCEE-C---SSHHHHHHHBCS
T ss_pred             EEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccc--------------cccc-h---hhhhhhhhhhcc
Confidence            44466653 2 334444456889999999 665554433211100              0000 0   011111111234


Q ss_pred             ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673          145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV  179 (205)
Q Consensus       145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i  179 (205)
                      .|.|+..  +........+...+...+++|..++-
T Consensus        67 ~~~ii~~--~~~~~~v~~v~~~l~~~~~~g~iiid   99 (176)
T d2pgda2          67 PRRIILL--VKAGQAVDNFIEKLVPLLDIGDIIID   99 (176)
T ss_dssp             SCEEEEC--SCTTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             cceEEEe--cCchHHHHHHHHHHHhccccCcEEEe
Confidence            5666664  34445555666777777777665443