Citrus Sinensis ID: 028676

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MKIKLWLFIYATVLDYVLVCCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccccccccccccccEEEEEEEccccccccccEEcccccccHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccEEccccccccccccEEEEEEccccccccEEEEEcccccccccccHHHHHHHHHHHcccccccccHHcccEEEEEEEEEEEEEEHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccccccccccccccEEEEEEEEcccccccccEEEcccccccHHHHHHHHHHHHHHcccccccccHHHccccEEEEEEEccccccccccccEEcccEEEEEEEccccccEEEccccHHHHHHccccHHHHHHHHHHHccccccccHHHHcEEEEEEEcccEEEEcHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MKIKLWLFIYATVLDYVLVCCfsysgfspLFVTWKKvvnggeprlrgcigTLEARCLINGFKDYALtsalkdrrfppiqarelpslecTVSILTDFETannyldwevgthgliieftdpeystrrsatylpevaahegwTKVEAIDSLMrkagfsgpitESLRKRIRLTRYQSTLFALHYsdyasyvkttrgaapsilgakpgny
Flexible Loop (DISEMBL)
MKIKLWLFIYATVLDYVLVCCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRrfppiqarelpsleCTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTtrgaapsilgakpgny
Low Complexity Region (SEG)
MKIKLWLFIYATVLDYVLVCCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY
Disordered region (IsUnstruct)
**IKLWLFIYATVLDYVLVCCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTR**************
Disordered Region (DISOPRED)
*KIKLWLFIYATVLDYVLVCCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYA*********************
Disordered Region (DISEMBL)
MKIKLWLFIYATVLDYVLVCCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY
Disordered Region (DISPRO)
MKIKLWLFIYATVLDYVLVCCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGA*****
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKIKLWLFIYATVLDYVLVCCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q9ZVJ2	214	Uncharacterized protein A	yes	no	0.839	0.803	0.767	6e-78
Q5RDQ3	310	AMMECR1-like protein OS=P	yes	no	0.736	0.487	0.561	5e-45
Q6DCA0	310	AMMECR1-like protein OS=H	yes	no	0.736	0.487	0.561	5e-45
Q8JZZ6	310	AMMECR1-like protein OS=M	yes	no	0.736	0.487	0.561	5e-45
Q9JHT5	344	AMME syndrome candidate g	no	no	0.751	0.447	0.550	2e-44
Q5RAS7	333	AMME syndrome candidate g	no	no	0.751	0.462	0.550	2e-44
Q9Y4X0	333	AMME syndrome candidate g	no	no	0.751	0.462	0.550	2e-44
Q9VCF0	243	Uncharacterized protein C	yes	no	0.795	0.670	0.511	2e-41
Q22004	200	Uncharacterized protein R	yes	no	0.760	0.78	0.478	6e-39
Q9URS8	227	Uncharacterized protein K	yes	no	0.804	0.726	0.374	1e-27

>sp|Q9ZVJ2|AMERL_ARATH Uncharacterized protein At2g38710 OS=Arabidopsis thaliana GN=At2g38710 PE=2 SV=1

 Score =  290 bits (741), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 132/172 (76%), Positives = 156/172 (90%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           PLFVTWKK+VNGGEPRLRGCIGTLEAR LI+GFKDYALTSAL+DRRFPPIQA+ELPSL+C
Sbjct: 36  PLFVTWKKIVNGGEPRLRGCIGTLEARRLISGFKDYALTSALRDRRFPPIQAKELPSLQC 95

Query: 89  TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
           TVS+LTD+E A +YLDWEVG HG+IIEFT+PE +T+RSATYLPEV AHEGWTK+EAIDSL
Sbjct: 96  TVSVLTDYEDAEDYLDWEVGKHGIIIEFTEPETNTKRSATYLPEVPAHEGWTKIEAIDSL 155

Query: 149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGA 200
           +RKAG++G ITE++R+RI LTRYQSTLF++HYS+Y SYVK TRG    ++  
Sbjct: 156 VRKAGYNGVITEAVRRRINLTRYQSTLFSMHYSEYLSYVKATRGVVGPVING 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RDQ3|AMERL_PONAB AMMECR1-like protein OS=Pongo abelii GN=AMMECR1L PE=2 SV=1

 Score =  180 bits (457), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 111/155 (71%), Gaps = 4/155 (2%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C
Sbjct: 137 PLFVTWK---TGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFC 193

Query: 89  TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
           +VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL
Sbjct: 194 SVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGVKRTATYLPEVAKEQDWDQIQTIDSL 252

Query: 149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 183
           +RK GF  PIT   RK I+LTRY+S    + Y++Y
Sbjct: 253 LRKGGFKAPITSEFRKTIKLTRYRSEKVTISYAEY 287

Pongo abelii (taxid: 9601)

>sp|Q6DCA0|AMERL_HUMAN AMMECR1-like protein OS=Homo sapiens GN=AMMECR1L PE=1 SV=1

 Score =  180 bits (457), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 111/155 (71%), Gaps = 4/155 (2%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C
Sbjct: 137 PLFVTWK---TGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFC 193

Query: 89  TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
           +VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL
Sbjct: 194 SVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGVKRTATYLPEVAKEQDWDQIQTIDSL 252

Query: 149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 183
           +RK GF  PIT   RK I+LTRY+S    + Y++Y
Sbjct: 253 LRKGGFKAPITSEFRKTIKLTRYRSEKVTISYAEY 287

Homo sapiens (taxid: 9606)

>sp|Q8JZZ6|AMERL_MOUSE AMMECR1-like protein OS=Mus musculus GN=Ammecr1l PE=2 SV=1

 Score =  180 bits (457), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 111/155 (71%), Gaps = 4/155 (2%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C
Sbjct: 137 PLFVTWK---TGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFC 193

Query: 89  TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
           +VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL
Sbjct: 194 SVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGIKRTATYLPEVAKEQDWDQIQTIDSL 252

Query: 149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 183
           +RK GF  PIT   RK I+LTRY+S    + Y++Y
Sbjct: 253 LRKGGFKAPITSEFRKSIKLTRYRSEKVTISYAEY 287

Mus musculus (taxid: 10090)

>sp|Q9JHT5|AMMR1_MOUSE AMME syndrome candidate gene 1 protein homolog OS=Mus musculus GN=Ammecr1 PE=2 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 4/158 (2%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C
Sbjct: 170 PLFVTWKI---GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFC 226

Query: 89  TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
           +VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL
Sbjct: 227 SVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSL 285

Query: 149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 186
           +RK G+  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct: 286 LRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 323

Mus musculus (taxid: 10090)

>sp|Q5RAS7|AMMR1_PONAB AMME syndrome candidate gene 1 protein homolog OS=Pongo abelii GN=AMMECR1 PE=2 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 4/158 (2%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C
Sbjct: 159 PLFVTWKI---GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFC 215

Query: 89  TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
           +VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL
Sbjct: 216 SVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSL 274

Query: 149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 186
           +RK G+  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct: 275 LRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 312

Pongo abelii (taxid: 9601)

>sp|Q9Y4X0|AMMR1_HUMAN AMME syndrome candidate gene 1 protein OS=Homo sapiens GN=AMMECR1 PE=2 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 4/158 (2%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C
Sbjct: 159 PLFVTWKI---GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFC 215

Query: 89  TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
           +VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL
Sbjct: 216 SVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSL 274

Query: 149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 186
           +RK G+  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct: 275 LRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 312

Homo sapiens (taxid: 9606)

>sp|Q9VCF0|Y5902_DROME Uncharacterized protein CG5902 OS=Drosophila melanogaster GN=CG5902 PE=2 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 110/168 (65%), Gaps = 5/168 (2%)

Query: 19  VCCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPI 78
           V  FS   + PLFVTWK    G + RLRGCIGT  A  L +G ++YALTSA KD RF PI
Sbjct: 69  VPVFSNDAY-PLFVTWKI---GRDKRLRGCIGTFSAMELHHGLREYALTSAFKDSRFAPI 124

Query: 79  QARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEG 138
              ELP L  +VSIL +FE A  +LDW++G HG+ IEF   E   +R+ATYLP+VA  +G
Sbjct: 125 SRDELPRLTVSVSILQNFEEAQGHLDWQLGVHGIRIEFL-TERGCKRTATYLPQVATEQG 183

Query: 139 WTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 186
           W +++ IDSL+RK G+   IT   RK I+LTRY+S    +HY +Y  Y
Sbjct: 184 WDQLQTIDSLLRKGGYRAAITPETRKSIKLTRYRSQEIQMHYKEYREY 231

Drosophila melanogaster (taxid: 7227)

>sp|Q22004|AMERL_CAEEL Uncharacterized protein R166.3 OS=Caenorhabditis elegans GN=R166.3 PE=4 SV=1

 Score =  160 bits (405), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 103/161 (63%), Gaps = 5/161 (3%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           PLFVTWKK   G +  LRGCIGT     L  G  +YA TSA  D RF PI   E+PSL+C
Sbjct: 38  PLFVTWKK---GHQHDLRGCIGTFSDLRLGEGLNEYAKTSAFHDSRFKPISREEVPSLQC 94

Query: 89  TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
            VS+L +FE  +N+ DW +G HG+ + F D   +  RSA +LPEVA  +GW  VE ID L
Sbjct: 95  GVSLLINFEPIHNFRDWTIGRHGVRMNFDDGHRN--RSAVFLPEVAQEQGWNHVETIDHL 152

Query: 149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKT 189
           +RK+G+ G I ++LR  +R+ R+QS+   L Y DY +Y ++
Sbjct: 153 IRKSGYGGHINDALRSALRIVRFQSSKLVLDYKDYVNYKQS 193

Caenorhabditis elegans (taxid: 6239)

>sp|Q9URS8|Y464_KLULA Uncharacterized protein KLLA0D02464g OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=KLLA0D02464g PE=4 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 14/179 (7%)

Query: 28  SPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLE 87
           SPLFVTWKK+   GE +LRGCIGT     +  G K YAL SAL+D RF PI+  EL  L 
Sbjct: 49  SPLFVTWKKL-KKGEYQLRGCIGTFSEGKIEEGLKRYALISALQDSRFTPIEREELSQLR 107

Query: 88  CTVSILTDFET---------ANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEG 138
           C  ++L+ F+T         + +  +WE+G HG+ I+F  P+ ++R SAT+LPEV   +G
Sbjct: 108 CGCNLLSQFKTIYSSEGTGNSGDIWNWEIGKHGIEIKFRHPKTNSRMSATFLPEVIPEQG 167

Query: 139 WTKVEAIDSLMRKAGFSGPITESLRKRIR----LTRYQSTLFALHYSDYASYVKTTRGA 193
           W + E  ++L+ KAG    + E ++   +    + RY+ T   + + ++ + + T   A
Sbjct: 168 WDQRETFENLIEKAGCWNYLEEVMKHWEKYFDEVIRYEGTKSEIAWDEFETGLSTVAEA 226

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
359486986	211	PREDICTED: uncharacterized protein At2g3	0.858	0.834	0.869	5e-88
359486988	211	PREDICTED: uncharacterized protein At2g3	0.878	0.853	0.85	7e-88
296086563	204	unnamed protein product [Vitis vinifera]	0.858	0.862	0.869	8e-88
224110148	212	predicted protein [Populus trichocarpa]	0.878	0.849	0.85	4e-86
118481647	212	unknown [Populus trichocarpa]	0.878	0.849	0.838	3e-85
255549418	212	AMME syndrome candidateprotein 1 protein	0.878	0.849	0.844	2e-83
449446293	209	PREDICTED: uncharacterized protein At2g3	0.858	0.842	0.812	2e-81
224097596	212	predicted protein [Populus trichocarpa]	0.878	0.849	0.8	5e-80
358346340	211	hypothetical protein MTR_077s0041 [Medic	0.873	0.848	0.8	2e-79
356575146	211	PREDICTED: uncharacterized protein At2g3	0.858	0.834	0.785	6e-78

>gi|359486986|ref|XP_002268158.2| PREDICTED: uncharacterized protein At2g38710 isoform 1 [Vitis vinifera]

 Score =  328 bits (842), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 153/176 (86%), Positives = 167/176 (94%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSAL+DRRFPPIQA+ELP LEC
Sbjct: 36  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALRDRRFPPIQAKELPYLEC 95

Query: 89  TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
           TVSILTD+ET  NYLDWE+G HG+IIEFTDP+Y+TRRSATYLPEVAAHEGWTK+EAIDSL
Sbjct: 96  TVSILTDYETGLNYLDWEIGKHGIIIEFTDPDYNTRRSATYLPEVAAHEGWTKMEAIDSL 155

Query: 149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGN 204
           MRKAG++G ITE+ RKRIRLTRYQSTLF +HYS+YASYVKTTRGAAP+I G KPGN
Sbjct: 156 MRKAGYNGTITETQRKRIRLTRYQSTLFTMHYSEYASYVKTTRGAAPTIAGVKPGN 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486988|ref|XP_003633501.1| PREDICTED: uncharacterized protein At2g38710 isoform 2 [Vitis vinifera]

 Score =  328 bits (842), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 153/180 (85%), Positives = 168/180 (93%)

Query: 25  SGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELP 84
             + PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSAL+DRRFPPIQA+ELP
Sbjct: 32  DAYFPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALRDRRFPPIQAKELP 91

Query: 85  SLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEA 144
            LECTVSILTD+ET  NYLDWE+G HG+IIEFTDP+Y+TRRSATYLPEVAAHEGWTK+EA
Sbjct: 92  YLECTVSILTDYETGLNYLDWEIGKHGIIIEFTDPDYNTRRSATYLPEVAAHEGWTKMEA 151

Query: 145 IDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGN 204
           IDSLMRKAG++G ITE+ RKRIRLTRYQSTLF +HYS+YASYVKTTRGAAP+I G KPGN
Sbjct: 152 IDSLMRKAGYNGTITETQRKRIRLTRYQSTLFTMHYSEYASYVKTTRGAAPTIAGVKPGN 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086563|emb|CBI32198.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (841), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 153/176 (86%), Positives = 167/176 (94%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSAL+DRRFPPIQA+ELP LEC
Sbjct: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALRDRRFPPIQAKELPYLEC 88

Query: 89  TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
           TVSILTD+ET  NYLDWE+G HG+IIEFTDP+Y+TRRSATYLPEVAAHEGWTK+EAIDSL
Sbjct: 89  TVSILTDYETGLNYLDWEIGKHGIIIEFTDPDYNTRRSATYLPEVAAHEGWTKMEAIDSL 148

Query: 149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGN 204
           MRKAG++G ITE+ RKRIRLTRYQSTLF +HYS+YASYVKTTRGAAP+I G KPGN
Sbjct: 149 MRKAGYNGTITETQRKRIRLTRYQSTLFTMHYSEYASYVKTTRGAAPTIAGVKPGN 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110148|ref|XP_002315428.1| predicted protein [Populus trichocarpa] gi|222864468|gb|EEF01599.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/180 (85%), Positives = 165/180 (91%)

Query: 26  GFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPS 85
           G  PLFVTWKKVVNGGEPRLRGCIGTLEAR L+NGF+DYALTSAL+DRRFPPIQA+ELP+
Sbjct: 33  GQHPLFVTWKKVVNGGEPRLRGCIGTLEARYLVNGFRDYALTSALRDRRFPPIQAKELPT 92

Query: 86  LECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAI 145
           LECTVSILT++ETANNYLDWEVGTHGLIIEFTDP  + RRSATYLPEVAAHEGWTK EAI
Sbjct: 93  LECTVSILTNYETANNYLDWEVGTHGLIIEFTDPNNNVRRSATYLPEVAAHEGWTKEEAI 152

Query: 146 DSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY 205
           DSLMRKAG+SG ITESLRK IR+TRYQSTLF L YSDY SYV+ TRGAAP+I G KPGNY
Sbjct: 153 DSLMRKAGYSGHITESLRKSIRVTRYQSTLFTLTYSDYVSYVRATRGAAPAINGVKPGNY 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481647|gb|ABK92765.1| unknown [Populus trichocarpa]

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 151/180 (83%), Positives = 165/180 (91%)

Query: 26  GFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPS 85
           G  PLFVTWKKVVNGGEPRLRGCIGTLEAR L+NGF+DYALTSAL+DRRFPPIQA+ELP+
Sbjct: 33  GQHPLFVTWKKVVNGGEPRLRGCIGTLEARYLVNGFRDYALTSALRDRRFPPIQAKELPT 92

Query: 86  LECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAI 145
           LECTVSILT++ETANNYLDWEVGTHGLIIEFTDP  + RRSATYLPEVAAHEGWTK EAI
Sbjct: 93  LECTVSILTNYETANNYLDWEVGTHGLIIEFTDPNNNVRRSATYLPEVAAHEGWTKEEAI 152

Query: 146 DSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY 205
           DSLMRKAG+SG ITESLRK I++TRYQSTLF L YSDY SYV+ TRGAAP+I G KPGN+
Sbjct: 153 DSLMRKAGYSGHITESLRKSIQVTRYQSTLFTLTYSDYVSYVRATRGAAPAINGVKPGNH 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549418|ref|XP_002515762.1| AMME syndrome candidateprotein 1 protein, putative [Ricinus communis] gi|223545090|gb|EEF46601.1| AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 152/180 (84%), Positives = 162/180 (90%)

Query: 26  GFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPS 85
           G  PLFVTWKKVVNGGEPRLRGCIGTLEAR LINGF+DYALTSALKDRRFPPIQ +ELPS
Sbjct: 33  GQHPLFVTWKKVVNGGEPRLRGCIGTLEARYLINGFRDYALTSALKDRRFPPIQPKELPS 92

Query: 86  LECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAI 145
           LECTVSILTD+ETAN+YLDWE+G HGLIIEF D   +TRRSATYLPEVAAHEGWTKVEAI
Sbjct: 93  LECTVSILTDYETANSYLDWEIGKHGLIIEFIDSNNNTRRSATYLPEVAAHEGWTKVEAI 152

Query: 146 DSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY 205
           DSL+RKAG+ G ITE+LRK IRLTRYQSTLF L YSDYASYVK TRG APSI GAKP N+
Sbjct: 153 DSLVRKAGYGGHITEALRKSIRLTRYQSTLFTLTYSDYASYVKATRGTAPSINGAKPINH 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446293|ref|XP_004140906.1| PREDICTED: uncharacterized protein At2g38710-like [Cucumis sativus] gi|449526983|ref|XP_004170492.1| PREDICTED: uncharacterized protein At2g38710-like [Cucumis sativus]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 143/176 (81%), Positives = 157/176 (89%)

Query: 26  GFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPS 85
           G  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYAL SAL+DRRFPPIQ +ELP 
Sbjct: 33  GQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALNSALRDRRFPPIQPKELPY 92

Query: 86  LECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAI 145
           LECTVSIL D+E A NYLDWEVG HG+IIEF DP+Y+ RRSATYLPEVAAHEGWTK+EAI
Sbjct: 93  LECTVSILVDYEIATNYLDWEVGKHGIIIEFNDPDYNARRSATYLPEVAAHEGWTKIEAI 152

Query: 146 DSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAK 201
           DSLMRKAG++G ITESLRK IRLTRYQSTLF +HY +Y SYVKT RG+ P ++GAK
Sbjct: 153 DSLMRKAGYNGVITESLRKCIRLTRYQSTLFTMHYGEYVSYVKTIRGSTPCVVGAK 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097596|ref|XP_002311003.1| predicted protein [Populus trichocarpa] gi|222850823|gb|EEE88370.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 159/180 (88%)

Query: 26  GFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPS 85
           G  PLFVTWKKVVNGGEP LRGCIGTLEA+ +I GF+DYALTSAL+DRRFPPIQA+ELP+
Sbjct: 33  GQHPLFVTWKKVVNGGEPHLRGCIGTLEAQYIITGFRDYALTSALRDRRFPPIQAKELPT 92

Query: 86  LECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAI 145
           LECTVSILTD+ETAN+YLDWEVG HGL+IEFTDP  + RRSATYLPEVAAHEGWT+ EAI
Sbjct: 93  LECTVSILTDYETANHYLDWEVGKHGLVIEFTDPNNNARRSATYLPEVAAHEGWTREEAI 152

Query: 146 DSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY 205
           DSLMRKAGFSG IT+ LRK IR+TRYQSTLF L YSDY SYV+ TRGAAPSI G K  N+
Sbjct: 153 DSLMRKAGFSGHITDILRKSIRVTRYQSTLFTLTYSDYVSYVRETRGAAPSINGVKHVNH 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346340|ref|XP_003637227.1| hypothetical protein MTR_077s0041 [Medicago truncatula] gi|355503162|gb|AES84365.1| hypothetical protein MTR_077s0041 [Medicago truncatula] gi|388502294|gb|AFK39213.1| unknown [Medicago truncatula]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 162/180 (90%), Gaps = 1/180 (0%)

Query: 25  SGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELP 84
            G  PLFVTWKKVVNGGEPRLRGCIG+LEAR LINGF+DYALTSAL+DRRFPPI+ARELP
Sbjct: 32  DGQHPLFVTWKKVVNGGEPRLRGCIGSLEARGLINGFRDYALTSALRDRRFPPIEARELP 91

Query: 85  SLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEA 144
            LECTVSILTD+ETAN+YLDWEVG HG+IIEF+DP+Y+TRRSATYLPEVAAHEGWT +EA
Sbjct: 92  LLECTVSILTDYETANDYLDWEVGKHGIIIEFSDPDYNTRRSATYLPEVAAHEGWTPLEA 151

Query: 145 IDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAK-PG 203
           IDSL+RKAG +  IT+SLRK I+LTRYQSTLF +HY +Y SYVK TRG APSI+G K PG
Sbjct: 152 IDSLIRKAGCNSRITDSLRKSIKLTRYQSTLFTMHYGEYFSYVKETRGEAPSIVGVKLPG 211

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575146|ref|XP_003555703.1| PREDICTED: uncharacterized protein At2g38710-like [Glycine max]

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 139/177 (78%), Positives = 157/177 (88%), Gaps = 1/177 (0%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           PLFVTWKKVVNGG+PRLRGCIGTLEAR LING KDYALTSAL+DRRFPPIQA ELP LEC
Sbjct: 36  PLFVTWKKVVNGGDPRLRGCIGTLEARSLINGLKDYALTSALRDRRFPPIQANELPLLEC 95

Query: 89  TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
           TVS+LTD+E AN+YLDWE+  HG+IIEF+DP Y+TRRSATYLPEVAA+EGWTK EAIDSL
Sbjct: 96  TVSLLTDYEAANHYLDWEIEKHGIIIEFSDPVYNTRRSATYLPEVAANEGWTKTEAIDSL 155

Query: 149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAAPSILGAKPGNY 205
           +RKAG++GPIT+ LR +I+LTRYQSTLF +HYS+Y SYVK  RG AP IL AK  NY
Sbjct: 156 IRKAGYNGPITDELRMQIQLTRYQSTLFTMHYSEYVSYVKERRGEAP-ILSAKSPNY 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2064189	214	AT2G38710 [Arabidopsis thalian	0.834	0.799	0.784	1.6e-72
MGI|MGI:2442711	310	Ammecr1l "AMME chromosomal reg	0.736	0.487	0.561	2.8e-43
UNIPROTKB|Q9Y4X0	333	AMMECR1 "AMME syndrome candida	0.751	0.462	0.550	1.2e-42
MGI|MGI:1860206	344	Ammecr1 "Alport syndrome, ment	0.751	0.447	0.550	1.2e-42
ZFIN|ZDB-GENE-040426-1533	371	ammecr1 "Alport syndrome, ment	0.751	0.415	0.544	1.2e-42
DICTYBASE|DDB_G0283437	206	DDB_G0283437 "AMMECR1 family p	0.795	0.791	0.512	4.2e-40
FB|FBgn0039136	243	CG5902 [Drosophila melanogaste	0.780	0.658	0.515	1.4e-39
ASPGD|ASPL0000039689	343	AN3064 [Emericella nidulans (t	0.702	0.419	0.472	3.8e-30
POMBASE|SPAC688.03c	193	SPAC688.03c "human AMMECR1 hom	0.756	0.803	0.428	9.4e-27
SGD|S000005815	251	YOR289W "Putative protein of u	0.804	0.657	0.351	2e-24

TAIR|locus:2064189 AT2G38710 [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 135/172 (78%), Positives = 157/172 (91%)

Query:    29 PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
             PLFVTWKK+VNGGEPRLRGCIGTLEAR LI+GFKDYALTSAL+DRRFPPIQA+ELPSL+C
Sbjct:    36 PLFVTWKKIVNGGEPRLRGCIGTLEARRLISGFKDYALTSALRDRRFPPIQAKELPSLQC 95

Query:    89 TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
             TVS+LTD+E A +YLDWEVG HG+IIEFT+PE +T+RSATYLPEV AHEGWTK+EAIDSL
Sbjct:    96 TVSVLTDYEDAEDYLDWEVGKHGIIIEFTEPETNTKRSATYLPEVPAHEGWTKIEAIDSL 155

Query:   149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRGAA-PSILG 199
             +RKAG++G ITE++R+RI LTRYQSTLF++HYS+Y SYVK TRG   P I G
Sbjct:   156 VRKAGYNGVITEAVRRRINLTRYQSTLFSMHYSEYLSYVKATRGVVGPVING 207

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:2442711 Ammecr1l "AMME chromosomal region gene 1-like" [Mus musculus (taxid:10090)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 87/155 (56%), Positives = 111/155 (71%)

Query:    29 PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
             PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C
Sbjct:   137 PLFVTWK---TGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFC 193

Query:    89 TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
             +VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL
Sbjct:   194 SVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGIKRTATYLPEVAKEQDWDQIQTIDSL 252

Query:   149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 183
             +RK GF  PIT   RK I+LTRY+S    + Y++Y
Sbjct:   253 LRKGGFKAPITSEFRKSIKLTRYRSEKVTISYAEY 287

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9Y4X0 AMMECR1 "AMME syndrome candidate gene 1 protein" [Homo sapiens (taxid:9606)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 87/158 (55%), Positives = 112/158 (70%)

Query:    29 PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
             PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C
Sbjct:   159 PLFVTWKI---GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFC 215

Query:    89 TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
             +VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL
Sbjct:   216 SVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSL 274

Query:   149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 186
             +RK G+  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct:   275 LRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 312

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1860206 Ammecr1 "Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1" [Mus musculus (taxid:10090)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 87/158 (55%), Positives = 112/158 (70%)

Query:    29 PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
             PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C
Sbjct:   170 PLFVTWKI---GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFC 226

Query:    89 TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
             +VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL
Sbjct:   227 SVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSL 285

Query:   149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 186
             +RK G+  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct:   286 LRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 323

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-1533 ammecr1 "Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human)" [Danio rerio (taxid:7955)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 86/158 (54%), Positives = 112/158 (70%)

Query:    29 PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
             PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C
Sbjct:   197 PLFVTWKI---GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFC 253

Query:    89 TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
             +VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL
Sbjct:   254 SVSLLTNFEDVGDYLDWEVGVHGIRIEFFN-EKGSKRTATYLPEVAKEQGWDHIQTIDSL 312

Query:   149 MRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 186
             +RK G+  PIT   RK I+LTRY+S    + Y++Y ++
Sbjct:   313 LRKGGYKAPITNDFRKTIKLTRYRSEKMTMSYAEYIAH 350

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0283437 DDB_G0283437 "AMMECR1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 84/164 (51%), Positives = 110/164 (67%)

Query:    28 SPLFVTWK-KVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSL 86
             SPLFVTWK    N  EP LRGCIGT   + L+ G   +ALTSALKD RF  I  +EL  L
Sbjct:    41 SPLFVTWKIDNKNYDEPILRGCIGTFAEKNLVEGLHKFALTSALKDSRFSAITKKELTKL 100

Query:    87 ECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAID 146
              C VS+L  FET ++  DWE+GTHG+ IEFTDP  +   ++TYLP+V   + WTK EAI 
Sbjct:   101 HCAVSLLVKFETVDSVWDWEIGTHGIWIEFTDPNTNQSSNSTYLPDVIPEQEWTKEEAIR 160

Query:   147 SLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTT 190
             SL++KAG++G + ++    I+LTRYQS+  +L YS++  Y K T
Sbjct:   161 SLIKKAGYNGKVDDNFFSLIKLTRYQSSKDSLSYSEFLEYKKAT 204

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0039136 CG5902 [Drosophila melanogaster (taxid:7227)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 85/165 (51%), Positives = 109/165 (66%)

Query:    22 FSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQAR 81
             FS   + PLFVTWK    G + RLRGCIGT  A  L +G ++YALTSA KD RF PI   
Sbjct:    72 FSNDAY-PLFVTWKI---GRDKRLRGCIGTFSAMELHHGLREYALTSAFKDSRFAPISRD 127

Query:    82 ELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTK 141
             ELP L  +VSIL +FE A  +LDW++G HG+ IEF   E   +R+ATYLP+VA  +GW +
Sbjct:   128 ELPRLTVSVSILQNFEEAQGHLDWQLGVHGIRIEFLT-ERGCKRTATYLPQVATEQGWDQ 186

Query:   142 VEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 186
             ++ IDSL+RK G+   IT   RK I+LTRY+S    +HY +Y  Y
Sbjct:   187 LQTIDSLLRKGGYRAAITPETRKSIKLTRYRSQEIQMHYKEYREY 231

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000039689 AN3064 [Emericella nidulans (taxid:162425)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 69/146 (47%), Positives = 85/146 (58%)

Query:    29 PLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
             PLFVTW  +   G   LRGCIGT EA+ L +G K YALTSA  D RF PI    +PSL C
Sbjct:   143 PLFVTWNTLSKSGRKSLRGCIGTFEAQELSHGLKSYALTSAFDDTRFSPIPKSLIPSLSC 202

Query:    89 TVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSL 148
             ++++L  FE   + LDW +GTHG+ I F       R  ATYLP+V   +GWTK E I SL
Sbjct:   203 SLTLLGSFEPCTSALDWTLGTHGIRISFI--HRGRRFGATYLPDVPVEQGWTKEETIKSL 260

Query:   149 MRKAGFSGPITESLRKRIRLTRYQST 174
             M KAG+ G   +      R  R  S+
Sbjct:   261 MHKAGWDGSSHQESSSHRRFLRGSSS 286

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPAC688.03c SPAC688.03c "human AMMECR1 homolog" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 69/161 (42%), Positives = 94/161 (58%)

Query:    23 SYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARE 82
             S++   PLFV +     G + +LRGCIGT  AR L+     ++  +A  D RF PI   E
Sbjct:    31 SWTRSIPLFVKFASG-KGHDKQLRGCIGTFRARPLVTNLTYFSKQAAFCDERFRPISLGE 89

Query:    83 LPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKV 142
             L  LEC + +L DFE  ++ LDWEVG HG+ I+FT      R S+TYLP VAA + W + 
Sbjct:    90 LALLECQIDLLVDFEPIDDPLDWEVGIHGVSIKFT--ANGIRYSSTYLPSVAAEQRWDQE 147

Query:   143 EAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 183
             E ++SL+ KAG+ G I  SL+  I  TRY+S      Y +Y
Sbjct:   148 ETLESLIHKAGYYGSI-RSLQ--ITATRYKSLEIGCTYEEY 185

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

SGD|S000005815 YOR289W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 65/185 (35%), Positives = 102/185 (55%)

Query:    24 YSGFSPLFVTWKK------VVNGGEPR--LRGCIGTLEARCLINGFKDYALTSALKDRRF 75
             Y+  + LF+TWKK       ++  E    LRGCIGT     + +G + Y+L +AL+DRRF
Sbjct:    63 YNEKTSLFITWKKKSNKHHTIDTNEENYILRGCIGTFAKMPIAHGIEKYSLIAALEDRRF 122

Query:    76 PPIQARELPSLECTVSILTDFETA--------NNYLDWEVGTHGLIIEFTDPEYSTRRSA 127
              PIQ REL  L+C+ +IL +F+T          +  DWE+G HG+ + F  P+  T  SA
Sbjct:   123 SPIQKRELVDLKCSCNILGNFKTIFRGGGNPNGDIFDWELGKHGIELYFKHPKTGTTCSA 182

Query:   128 TYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKR----IRLTRYQSTLFALHYSDY 183
             T+LP+V   + W K +   +L+ KAG+ G I+E +       I + RY+    ++ Y ++
Sbjct:   183 TFLPDVMPEQHWNKEDTFANLIEKAGYWGNISEVMDNFETYFIEVIRYEGKKSSITYEEF 242

Query:   184 ASYVK 188
                +K
Sbjct:   243 NKQLK 247

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZVJ2	AMERL_ARATH	No assigned EC number	0.7674	0.8390	0.8037	yes	no
Q9VCF0	Y5902_DROME	No assigned EC number	0.5119	0.7951	0.6707	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
pfam01871	172	pfam01871, AMMECR1, AMMECR1	4e-54
COG2078	203	COG2078, AMMECR1, Uncharacterized conserved protei	8e-31
TIGR00296	200	TIGR00296, TIGR00296, uncharacterized protein, PH0	2e-29
TIGR04335	175	TIGR04335, AmmeMemoSam_A, AmmeMemoRadiSam system p	1e-23
PRK00801	201	PRK00801, PRK00801, hypothetical protein; Provisio	7e-10
PRK03881	467	PRK03881, PRK03881, hypothetical protein; Provisio	2e-09

>gnl|CDD|216752 pfam01871, AMMECR1, AMMECR1

 Score =  170 bits (432), Expect = 4e-54
 Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 15/151 (9%)

Query: 28  SPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSL 86
             +FVT KK        LRGCIGT E  R L     + A+ +A +D RFPP+   ELP L
Sbjct: 33  RGVFVTLKK-----RGELRGCIGTFEPVRPLAEAVIEAAIAAAFEDPRFPPVTEEELPDL 87

Query: 87  ECTVSILTDFETANNYLD-WEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAI 145
              VS+L+  E  +  L+  EVG HGLIIEF         S   LP+VA  +GW   E +
Sbjct: 88  TIEVSVLSPPEPIDVDLEDLEVGRHGLIIEF------GGYSGLLLPQVAVEQGWDPEEFL 141

Query: 146 DSLMRKAGFSGPITESLRKRIRLTRYQSTLF 176
             L RKAG   P    L + + + R+++ +F
Sbjct: 142 AHLCRKAGL--PPDAWLDEDVEIYRFEAQIF 170

This family consists of several AMMECR1 as well as several uncharacterized proteins. The contiguous gene deletion syndrome AMME is characterized by Alport syndrome, midface hypoplasia, mental retardation and elliptocytosis and is caused by a deletion in Xq22.3, comprising several genes including COL4A5, FACL4 and AMMECR1. This family contains sequences from several eukaryotic species as well as archaebacteria and it has been suggested that the AMMECR1 protein may have a basic cellular function, potentially in either the transcription, replication, repair or translation machinery. Length = 172

>gnl|CDD|224989 COG2078, AMMECR1, Uncharacterized conserved protein [Function unknown]

 Score =  111 bits (280), Expect = 8e-31
 Identities = 52/154 (33%), Positives = 71/154 (46%), Gaps = 16/154 (10%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEARC-LINGFKDYALTSALKDRRFPPIQARELPSLE 87
            +FVT +K    GE  LRGCIGT E    L       A+ +AL D RFPP+   EL  + 
Sbjct: 45  GVFVTLEKYSPDGE--LRGCIGTPEPVKPLAEAIIKAAIEAALSDPRFPPVSLEELDDIV 102

Query: 88  CTVSILTDFET----ANNYL-DWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKV 142
             V+ILT  E           D EVG HGLI+E          S   LP+V     W   
Sbjct: 103 VEVTILTPPEEIDVPPEERPEDIEVGRHGLIVEK------GIYSGLLLPQVPVEYRWDVE 156

Query: 143 EAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLF 176
           E ++    KAG  G     L + +++ R+++ +F
Sbjct: 157 EFLEHTCEKAGLPGDC--WLDEDVKIYRFEAQIF 188

Length = 203

>gnl|CDD|232909 TIGR00296, TIGR00296, uncharacterized protein, PH0010 family

 Score =  107 bits (270), Expect = 2e-29
 Identities = 56/154 (36%), Positives = 79/154 (51%), Gaps = 18/154 (11%)

Query: 30  LFVTWKKVVNGGEPRLRGCIGTLE-ARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           +F+T KK    G   LRGCIGT E    LI   ++ A+++A +D RFPP+Q  EL  ++ 
Sbjct: 46  VFITLKK---KGNKHLRGCIGTPEPVMPLIEAIEEAAISAATEDPRFPPVQLEELDDIKV 102

Query: 89  TVSILTDFET-----ANNYL-DWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKV 142
            VSILT  ET       +Y  D E+G HGLI+EF        +    LP+VA   GW   
Sbjct: 103 EVSILTPPETIFVGGPKDYPFDIEIGRHGLIVEFGP------KRGLLLPQVAVEYGWDAE 156

Query: 143 EAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLF 176
           E + +L  KAG       +    I + R++  +F
Sbjct: 157 EFLANLCMKAGLPPDCFLT--YGIEVYRFEGQIF 188

Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii [Unknown function, General]. Length = 200

>gnl|CDD|234550 TIGR04335, AmmeMemoSam_A, AmmeMemoRadiSam system protein A

 Score = 92.2 bits (230), Expect = 1e-23
 Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 22/153 (14%)

Query: 31  FVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLECT 89
           FVT  K  NG    LRGCIGT+EA R L+    + A+ +A KD RFPP+   EL  L   
Sbjct: 38  FVTLHK--NG---ELRGCIGTIEADRPLVEDVAENAIAAAFKDPRFPPLTEDELDRLTIE 92

Query: 90  VSILT-----DFETANNYL-DWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVE 143
           VS+L+       E     L +   G  GLI+E         R   +LP+V          
Sbjct: 93  VSVLSPPEPLPVEDEEELLEELRPGRDGLILE------DGGRRGLFLPQVWEELP-DPET 145

Query: 144 AIDSLMRKAGFSGPITESLRKRIRLTRYQSTLF 176
            +  L  KAG      ++ +    + R+   +F
Sbjct: 146 FLRHLCLKAGLPP---DAWKDPTTIYRFTVEVF 175

Members of this protein family belong to the same domain family as AMMECR1, a mammalian protein named for AMME - Alport syndrome, Mental Retardation, Midface hypoplasia, and Elliptocytosis. Members of the present family occur as part of a three gene system with a homolog of the mammalian protein Memo (Mediator of ErbB2-driven cell MOtility), and an uncharacterized radical SAM enzyme. Length = 175

>gnl|CDD|234839 PRK00801, PRK00801, hypothetical protein; Provisional

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 21/133 (15%)

Query: 31  FVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECT 89
           FVT  K    G   LRGCIG       L+    D A+++A +D RFPP++  E+  +   
Sbjct: 47  FVTLNK---HGV--LRGCIGFPYPDSPLVEAIIDSAISAATRDPRFPPVKLEEMDEITVE 101

Query: 90  VSILTDFETAN-------NYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKV 142
           V++LT  E            +  EVG HGLI++          S   LP+VA   G+   
Sbjct: 102 VTVLTPPELIEGPPEELPEKI--EVGRHGLIVK------KGIYSGLLLPQVAPEWGFDSE 153

Query: 143 EAIDSLMRKAGFS 155
           E +     KAG  
Sbjct: 154 EFLSHTCLKAGLP 166

Length = 201

>gnl|CDD|235170 PRK03881, PRK03881, hypothetical protein; Provisional

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 25/130 (19%)

Query: 31  FVTWKKVVNGGEPRLRGCIGTLE------ARCLINGFKDYALTSALKDRRFPPIQARELP 84
           FV+ KK  +G    LRGCIGT+       A  +I      A+++  +D RFPP++  EL 
Sbjct: 338 FVSLKK--DG---ELRGCIGTIFPTRENIAEEIIRN----AISAGTEDPRFPPVEEDELD 388

Query: 85  SLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVE- 143
            L  +V +LT+ E  ++  + +   +G+I+       S RR    LP++   EG   VE 
Sbjct: 389 DLVYSVDVLTEPEPVSSLDELDPKRYGVIVR------SGRRRGLLLPDL---EGVDTVEE 439

Query: 144 AIDSLMRKAG 153
            +   +RKAG
Sbjct: 440 QLSIALRKAG 449

Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
KOG3274	210	consensus Uncharacterized conserved protein, AMMEC	100.0
PF01871	171	AMMECR1: AMMECR1; InterPro: IPR002733 The contiguo	100.0
TIGR00296	200	uncharacterized protein, PH0010 family. Members of	100.0
PRK00801	201	hypothetical protein; Provisional	100.0
COG2078	203	AMMECR1 Uncharacterized conserved protein [Functio	100.0
PRK03881	467	hypothetical protein; Provisional	100.0

>KOG3274 consensus Uncharacterized conserved protein, AMMECR1 [Function unknown]

Probab=100.00  E-value=2.6e-57  Score=380.90  Aligned_cols=180  Identities=57%  Similarity=0.978  Sum_probs=165.4

Q ss_pred             hhhhhcc--ccccCCCCCCCccceEEEEEEeccCCCCcceeeecccCcccHHHHHHHHHHHhhhcCCCCCCCCcCcCCCc
Q 028676            9 IYATVLD--YVLVCCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSL   86 (205)
Q Consensus         9 ~~~~~~~--~~~~~~~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p~pL~~~v~~~Ai~AA~~DpRF~Pl~~~EL~~L   86 (205)
                      +|+++-.  -+-++|.-.+...|+||||++   |.+.+||||||||+++||+.++.+||+.|||+|.||+||+.+||++|
T Consensus        25 l~~~ln~~k~p~~~~~~~~~~~PLFvtwk~---g~dkrLRGCIGTFsam~L~~Gl~eYaltsAl~DsRF~PIsr~ELp~L  101 (210)
T KOG3274|consen   25 LYAHLNNEKSPSLPPDFRNRLYPLFVTWKK---GHDKRLRGCIGTFSAMPLHSGLREYALTSALKDSRFPPISREELPSL  101 (210)
T ss_pred             hhhhhccccCCCcchhhhccCcceeEEecc---CCCcccccceeehhhcchhhhHHHHHHHHHhhcccCCCCChhhcCce
Confidence            4565552  233366677788999999996   44689999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecCccccCCccCCccCceeeEEEEeCCCCCCcceeeeeccchhccCCCHHHHHHHHHHHcCCCCCCcccccCcE
Q 028676           87 ECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRI  166 (205)
Q Consensus        87 ~ieVSvLs~~e~~~d~~d~~~G~hGlii~~~~~~~g~~~~atfLPqVa~Eq~w~~eefl~~L~~KAGl~~~~~~~~~~~i  166 (205)
                      .|+||+|++||++.|+.||++|+|||.|+|.+ ..|..++|||||+||.|||||++|++++|++||||.+.|++.+++.|
T Consensus       102 ~CsvslL~nFE~i~d~lDWevG~HGIrieF~~-e~g~krsATyLPeVa~EQgWd~~eTidsLirKaGY~g~It~~~r~~I  180 (210)
T KOG3274|consen  102 QCSVSLLTNFEDIFDYLDWEVGVHGIRIEFTN-ETGTKRSATYLPEVAAEQGWDQIETIDSLIRKAGYKGPITEELRKSI  180 (210)
T ss_pred             EEEEEeeccchhcccccceeeccceEEEEEEc-CCCcEeeeeecccchhhcCCcHHHHHHHHHHhcCCCCccCHHHHhhe
Confidence            99999999999999999999999999999987 34799999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEEEEeehHHHHHHHHhhcC
Q 028676          167 RLTRYQSTLFALHYSDYASYVKTTRG  192 (205)
Q Consensus       167 ~v~ryq~~~~~~~~~ey~~~~~~~~~  192 (205)
                      +++||++++++++|.||++.++++..
T Consensus       181 ~ltRY~S~k~~~~Y~EY~~~~q~~~~  206 (210)
T KOG3274|consen  181 KLTRYRSEKISITYEEYLAYLQHHGA  206 (210)
T ss_pred             eeeEeeceeeeeeHHHHHHHHHhhcC
Confidence            99999999999999999999999753

>PF01871 AMMECR1: AMMECR1; InterPro: IPR002733 The contiguous gene deletion syndrome is characterised by Alport syndrome (A), mental retardation (M), midface hypoplasia (M), and elliptocytosis (E), as well as generalized hypoplasia and cardiac abnormalities

Probab=100.00  E-value=3.7e-57  Score=376.17  Aligned_cols=148  Identities=40%  Similarity=0.627  Sum_probs=120.9

Q ss_pred             ccCCCCCCCccceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCCCCCCCCcCcCCCceEEEEeecCc
Q 028676           18 LVCCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDF   96 (205)
Q Consensus        18 ~~~~~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~v~~~Ai~AA~~DpRF~Pl~~~EL~~L~ieVSvLs~~   96 (205)
                      ...++.+.+++||||||++     +|+|||||||++| +||+++|++||++|||+||||+||+++||++|+||||||++|
T Consensus        23 ~~~~~~l~~~~g~FVTl~~-----~g~LRGCIGt~~p~~~L~~~v~~~A~~AA~~DpRF~Pl~~~El~~l~ieVSvL~~~   97 (171)
T PF01871_consen   23 PPLPPELSEPRGVFVTLKK-----DGELRGCIGTFEPVRPLAEDVIENAIAAAFEDPRFPPLTPSELPELSIEVSVLSPP   97 (171)
T ss_dssp             CT--GGGGSBEEEEEEEEE-----CCCEEEEEEESSSESBHHHHHHHHHHHHHHT-TTS----GGGGGGEEEEEEEE---
T ss_pred             CCCChhhcCceeEEEEEEE-----CCEEEEEeccCCcchhHHHHHHHHHHHHhhCCCCCCCCCHHHHcccEEEEEeccCc
Confidence            4456778889999999999     5899999999999 999999999999999999999999999999999999999999


Q ss_pred             cccCCccCCccCceeeEEEEeCCCCCCcceeeeeccchhccCCCHHHHHHHHHHHcCCCCCCcccccCcEEEEEEEEEEE
Q 028676           97 ETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLF  176 (205)
Q Consensus        97 e~~~d~~d~~~G~hGlii~~~~~~~g~~~~atfLPqVa~Eq~w~~eefl~~L~~KAGl~~~~~~~~~~~i~v~ryq~~~~  176 (205)
                      ++++++.+|+||+|||+|++      ++++||||||||.||+||+++||++||+|||++.+  .|.+++++++|||+++|
T Consensus        98 ~~i~~~~~~~~g~~Glil~~------~~~~~~~LPqVa~E~~w~~~~fl~~l~~KAG~~~~--~w~~~~~~~~rf~~~~f  169 (171)
T PF01871_consen   98 EPISDPEDWEPGRHGLILEF------GGYRGTFLPQVAWEQGWDPEEFLRHLCRKAGLPPD--AWKSPDIKLYRFQAEVF  169 (171)
T ss_dssp             EE--GGGG--TTT-EEEEEE------TTEEEEE-THHHHHTT--HHHHHHHHHHHTTS-TT--CCCTTTSEEEEE-EEEE
T ss_pred             EEcCCHHHcccCcceeEEEe------cCcceEECCCchhhcCCCHHHHHHHHHHHCCCCcc--ccccCCeEEEEEEEEEE
Confidence            99999999999999999999      89999999999999999999999999999999974  34488999999999999


Q ss_pred             Ee
Q 028676          177 AL  178 (205)
Q Consensus       177 ~~  178 (205)
                      +|
T Consensus       170 ~E  171 (171)
T PF01871_consen  170 SE  171 (171)
T ss_dssp             EE
T ss_pred             eC
Confidence            86

It is caused by a deletion in Xq22.3, comprising several genes including AMME chromosomal region gene 1 (AMMECR1), which encodes a protein with a nuclear location and presently unknown function. The C-terminal region of AMMECR1 (from residue 122 to 333) is well conserved, and homologues appear in species ranging from bacteria and archaea to eukaryotes. The high level of conservation of the AMMECR1 domain points to a basic cellular function, potentially in either the transcription, replication, repair or translation machinery [, ]. The AMMECR1 domain contains a 6-amino-acid motif (LRGCIG) that might be functionally important since it is strikingly conserved throughout evolution []. The AMMECR1 domain consists of two distinct subdomains of different sizes. The large subdomain, which contains both the N- and C-terminal regions, consists of five alpha-helices and five beta-strands. These five beta-strands form an antiparallel beta-sheet. The small subdomain consists of four alpha-helices and three beta-strands, and these beta-strands also form an antiparallel beta-sheet. The conserved 'LRGCIG' motif is located at beta(2) and its N-terminal loop, and most of the side chains of these residues point toward the interface of the two subdomains. The two subdomains are connected by only two loops, and the interaction between the two subdomains is not strong. Thus, these subdomains may move dynamically when the substrate enters the cleft. The size of the cleft suggests that the substrate is large, e.g., the substrate may be a nucleic acid or protein. However, the inner side of the cleft is not filled with positively charged residues, and therefore it is unlikely that negatively charged nucleic acids such as DNA or RNA interact at this site []. ; PDB: 1WSC_B 1VAJ_A 1ZQ7_D.

>TIGR00296 uncharacterized protein, PH0010 family

Probab=100.00  E-value=6.1e-55  Score=371.13  Aligned_cols=146  Identities=37%  Similarity=0.599  Sum_probs=134.9

Q ss_pred             CCCCCccceEEEEEEeccCCCCc--ceeeecccCc-ccHHHHHHHHHHHhhhcCCCCCCCCcCcCCCceEEEEeecCccc
Q 028676           22 FSYSGFSPLFVTWKKVVNGGEPR--LRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFET   98 (205)
Q Consensus        22 ~~~~~~~g~FVTl~~~~~~~~~~--LRGCIGt~~p-~pL~~~v~~~Ai~AA~~DpRF~Pl~~~EL~~L~ieVSvLs~~e~   98 (205)
                      ..+.+++||||||++     +++  |||||||+.| +||+++|++||++|||+||||+||+++||++|+||||||+++++
T Consensus        38 ~~l~~~~g~FVTl~~-----~~~~~LRGCIGs~~p~~pL~~~v~~~A~~AA~~DpRF~Pl~~~EL~~l~ieVSvL~~~e~  112 (200)
T TIGR00296        38 IVFNEKRGVFITLKK-----KGNKHLRGCIGTPEPVMPLIEAIEEAAISAATEDPRFPPVQLEELDDIKVEVSILTPPET  112 (200)
T ss_pred             hhhCCcccEEEEEEE-----CCCcCCCcccccCCCcccHHHHHHHHHHHHHcCCCCCCCCChHHhCCcEEEEEeCCCCEE
Confidence            456889999999998     356  9999999999 99999999999999999999999999999999999999999999


Q ss_pred             cC------CccCCccCceeeEEEEeCCCCCCcceeeeeccchhccCCCHHHHHHHHHHHcCCCCCCccccc-CcEEEEEE
Q 028676           99 AN------NYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLR-KRIRLTRY  171 (205)
Q Consensus        99 ~~------d~~d~~~G~hGlii~~~~~~~g~~~~atfLPqVa~Eq~w~~eefl~~L~~KAGl~~~~~~~~~-~~i~v~ry  171 (205)
                      ++      ++.+|+||+|||+|++      +.++||||||||.||+||+++||.+||+|||+++   +.|. +.++++||
T Consensus       113 i~~~~~~~~~~~~~~G~hGlii~~------g~~~gt~LPqVa~E~~wd~~~fl~~l~~KAGl~~---d~w~~~~~~v~rf  183 (200)
T TIGR00296       113 IFVGGPKDYPFDIEIGRHGLIVEF------GPKRGLLLPQVAVEYGWDAEEFLANLCMKAGLPP---DCFLTYGIEVYRF  183 (200)
T ss_pred             cccCCccccHHHcccccceEEEEE------CCccEEECCccHhhcCCCHHHHHHHHHHhCCCCc---cccccCCcEEEEE
Confidence            93      5678999999999999      7999999999999999999999999999999999   4455 47999999


Q ss_pred             EEEEEEeehH
Q 028676          172 QSTLFALHYS  181 (205)
Q Consensus       172 q~~~~~~~~~  181 (205)
                      ++++|++...
T Consensus       184 ~~~~f~E~~~  193 (200)
T TIGR00296       184 EGQIFEEFEP  193 (200)
T ss_pred             EEEEEEecCC
Confidence            9999997643

Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii.

>PRK00801 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-54  Score=369.63  Aligned_cols=147  Identities=29%  Similarity=0.420  Sum_probs=137.8

Q ss_pred             CCCCCCccceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCCCCCCCCcCcCCCceEEEEeecCcccc
Q 028676           21 CFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETA   99 (205)
Q Consensus        21 ~~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~v~~~Ai~AA~~DpRF~Pl~~~EL~~L~ieVSvLs~~e~~   99 (205)
                      |..+.+++||||||++     +|+|||||||+.| +||+++|++||++|||+||||+||+++||++|.||||||++++++
T Consensus        37 ~~~l~~~~g~FVTl~~-----~g~LRGCIGs~~p~~pL~~~v~~~A~~AA~~DpRF~Pl~~~EL~~l~ieVSvLs~~e~i  111 (201)
T PRK00801         37 PPVFWEKRGVFVTLNK-----HGVLRGCIGFPYPDSPLVEAIIDSAISAATRDPRFPPVKLEEMDEITVEVTVLTPPELI  111 (201)
T ss_pred             CHhHcccccEEEEEEE-----CCeeccccCCCCCcccHHHHHHHHHHHHHcCCCCCCCCChHHhCCcEEEEEEcCCCEEc
Confidence            3457889999999998     5899999999999 999999999999999999999999999999999999999999999


Q ss_pred             CC-----ccCCccCceeeEEEEeCCCCCCcceeeeeccchhccCCCHHHHHHHHHHHcCCCCCCcccccCcEEEEEEEEE
Q 028676          100 NN-----YLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQST  174 (205)
Q Consensus       100 ~d-----~~d~~~G~hGlii~~~~~~~g~~~~atfLPqVa~Eq~w~~eefl~~L~~KAGl~~~~~~~~~~~i~v~ryq~~  174 (205)
                      ++     +.+|+||+|||+|++      +.++||||||||+|||||+++||++||+||||++   +.|.++++++||+++
T Consensus       112 ~~~~~~l~~~~~~G~~Glii~~------g~~~g~~LPqV~~e~~wd~~efl~~l~~KAGl~~---d~w~~~~~v~rf~~~  182 (201)
T PRK00801        112 EGPPEELPEKIEVGRHGLIVKK------GIYSGLLLPQVAPEWGFDSEEFLSHTCLKAGLPP---DCWLDDAEVYRFEGQ  182 (201)
T ss_pred             cCcchhhHHhccccceEEEEEe------CCccEEECCcchhhcCCCHHHHHHHHHHhcCCCc---cccccCcEEEEEEEE
Confidence            75     578999999999999      7999999999999999999999999999999998   567779999999999


Q ss_pred             EEEeehH
Q 028676          175 LFALHYS  181 (205)
Q Consensus       175 ~~~~~~~  181 (205)
                      +|++.-.
T Consensus       183 ~f~E~~p  189 (201)
T PRK00801        183 IFKEEEP  189 (201)
T ss_pred             EEEccCC
Confidence            9998654

>COG2078 AMMECR1 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.8e-50  Score=340.91  Aligned_cols=151  Identities=33%  Similarity=0.487  Sum_probs=141.0

Q ss_pred             CCCCCCccceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCCCCCCCCcCcCCCceEEEEeecCcccc
Q 028676           21 CFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETA   99 (205)
Q Consensus        21 ~~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~v~~~Ai~AA~~DpRF~Pl~~~EL~~L~ieVSvLs~~e~~   99 (205)
                      +..+++++|+||||++.+  ++++||||||++.| .||+++++++|+.||++||||+||+.+||+++.||||||++|+++
T Consensus        37 ~~~~~~k~gvFvTl~~~~--~~~~LRGCIG~~~p~~~l~~ai~~~Ai~AA~~DPRF~pv~~~EL~~i~veV~iLt~pe~i  114 (203)
T COG2078          37 PKLFQEKRGVFVTLEKYS--PDGELRGCIGTPEPVKPLAEAIIKAAIEAALSDPRFPPVSLEELDDIVVEVTILTPPEEI  114 (203)
T ss_pred             chhhhhccceEEEEEEeC--CCCceeeecccCcccCcHHHHHHHHHHHHHhcCCCCCCCChhHhcceEEEEEEcCCCeec
Confidence            467899999999999965  24799999999999 899999999999999999999999999999999999999999999


Q ss_pred             CCc-----cCCccCceeeEEEEeCCCCCCcceeeeeccchhccCCCHHHHHHHHHHHcCCCCCCcccccCcEEEEEEEEE
Q 028676          100 NNY-----LDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQST  174 (205)
Q Consensus       100 ~d~-----~d~~~G~hGlii~~~~~~~g~~~~atfLPqVa~Eq~w~~eefl~~L~~KAGl~~~~~~~~~~~i~v~ryq~~  174 (205)
                      ++.     .+|++|+|||++.+      +.++|++||||++|++||+++||+++|.||||+++  +|..+++++++|+++
T Consensus       115 ~~~p~~~p~~ie~G~~Gliv~~------g~~sgllLPqV~vE~~w~~eefL~~~c~KAGlp~~--~w~~~~~~iy~F~~~  186 (203)
T COG2078         115 DVPPEERPEDIEVGRHGLIVEK------GIYSGLLLPQVPVEYRWDVEEFLEHTCEKAGLPGD--CWLDEDVKIYRFEAQ  186 (203)
T ss_pred             CCCchhChhheeecceEEEEec------CCcceeecCccccccCCCHHHHHHHHHHHcCCCcc--cccccCceEEEEEEE
Confidence            754     68999999999999      89999999999999999999999999999999996  667779999999999


Q ss_pred             EEEeehH
Q 028676          175 LFALHYS  181 (205)
Q Consensus       175 ~~~~~~~  181 (205)
                      +|+++..
T Consensus       187 If~E~~p  193 (203)
T COG2078         187 IFKEKEP  193 (203)
T ss_pred             EEEecCC
Confidence            9999865

>PRK03881 hypothetical protein; Provisional

Probab=100.00  E-value=2.9e-44  Score=336.51  Aligned_cols=135  Identities=28%  Similarity=0.469  Sum_probs=125.4

Q ss_pred             CCCccceEEEEEEeccCCCCcceeeecccCc-c-cHHHHHHHHHHHhhhcCCCCCCCCcCcCCCceEEEEeecCccccCC
Q 028676           24 YSGFSPLFVTWKKVVNGGEPRLRGCIGTLEA-R-CLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANN  101 (205)
Q Consensus        24 ~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~-pL~~~v~~~Ai~AA~~DpRF~Pl~~~EL~~L~ieVSvLs~~e~~~d  101 (205)
                      ++++.||||||++     +|+|||||||++| + ||.++|++||++|||+||||+||+++||++|.||||||+++|++++
T Consensus       331 ~~~~~g~FVTl~~-----~g~LRGCIG~~~p~~~~L~~~v~~~a~~AA~~DpRF~pl~~~El~~l~i~VsvL~~~~~~~~  405 (467)
T PRK03881        331 LNRRAGVFVSLKK-----DGELRGCIGTIFPTRENIAEEIIRNAISAGTEDPRFPPVEEDELDDLVYSVDVLTEPEPVSS  405 (467)
T ss_pred             hCCcccEEEEEEE-----CCeeeeeeeecCCCcchHHHHHHHHHHHHhcCCCCCCCCChHHhCCeEEEEEEcCCCeECCC
Confidence            6889999999998     4899999999999 4 8999999999999999999999999999999999999999999999


Q ss_pred             ccCCccCceeeEEEEeCCCCCCcceeeeeccchhccCCCHHHHHHHHHHHcCCCCCCcccccCcEEEEEEEEEEEE
Q 028676          102 YLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFA  177 (205)
Q Consensus       102 ~~d~~~G~hGlii~~~~~~~g~~~~atfLPqVa~Eq~w~~eefl~~L~~KAGl~~~~~~~~~~~i~v~ryq~~~~~  177 (205)
                      +.+|+||+|||+|++      +.++|||||||  |+.+++++||+++|+|||++++      +.++++||++++|.
T Consensus       406 ~~~~~~g~~Gli~~~------~~~~g~~LP~v--~~~~~~~~fl~~~~~KaGl~~~------~~~~~~~f~~~~~~  467 (467)
T PRK03881        406 LDELDPKRYGVIVRS------GRRRGLLLPDL--EGVDTVEEQLSIALRKAGIDPD------EDVEIERFEVVRHK  467 (467)
T ss_pred             HHHcCCccceEEEEE------CCccEEECCCC--CCCCCHHHHHHHHHHhcCCCCC------CCeEEEEEEEEEeC
Confidence            999999999999999      78999999999  4434559999999999999995      24999999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
1wsc_A	230	Crystal Structure Of St0229, Function Unknown Prote		1e-07
1vaj_A	214	Crystal Structure Of Uncharacterized Protein Ph0010		2e-06
1zq7_A	207	X-Ray Crystal Structure Of Protein Q8pzk8 From Meth		3e-06

>pdb|1WSC|A Chain A, Crystal Structure Of St0229, Function Unknown Protein From Sulfolobus Tokodaii Length = 230

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 40  GGEPRLRGCIGTLEARC-LINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFET 98
           G    LRGCIG +EA   L       A+ +A  D RFPP+   E  ++   V++LT  + 
Sbjct: 66  GNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQE 125
Query: 99  ANNYLDWE------VGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKA 152
            +    WE      VG  GLI+     EY    S   LP+V     W +   +     KA
Sbjct: 126 IDVENRWELPKKIKVGEDGLIV-----EYGILYSGLLLPQVPXEYCWDEETFLAETCIKA 180
Query: 153 GFSGPITESLRKRIRLTRYQSTLF 176
           G        L  ++++ ++Q  +F
Sbjct: 181 GLEPDCW--LNNKVKIKKFQGIIF 202

>pdb|1VAJ|A Chain A, Crystal Structure Of Uncharacterized Protein Ph0010 From Pyrococcus Horikoshii Length = 214

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 30  LFVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
           +FVT  +     +  LRGCIG       L+      A+ SA+ D RFPP++  E  +L  
Sbjct: 47  VFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPRFPPVKLEEXDNLVV 106
Query: 89  TVSILTDFETANNYLD-----WEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVE 143
            VS+LT  E      +      +VG  GLI+E          S   LP+V    GW + E
Sbjct: 107 EVSVLTPPELIEGPPEERPRKIKVGRDGLIVE------KGIYSGLLLPQVPVEWGWDEEE 160
Query: 144 AIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYS 181
            +     KAG   P    L +  ++ ++ + +F   Y 
Sbjct: 161 FLAETCWKAGL--PPDCWLDEDTKVYKFTAEIFEEEYP 196

>pdb|1ZQ7|A Chain A, X-Ray Crystal Structure Of Protein Q8pzk8 From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar9. Length = 207

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 27  FSPLFVTWKKV----VNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRRFPPIQAR 81
            SP+F  ++ V      GG   LRGCIG       L     D A+++A +D RFP ++  
Sbjct: 37  LSPVFEEYRGVFVTLTEGG--LLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQD 94
Query: 82  ELPSLECTVSILTDFETANNYLDW-----EVGTHGLIIEFTDPEYSTRRSATYLPEVAAH 136
           E  ++   V+ILT  E  N          E+G HGLI++              LP+VA  
Sbjct: 95  EXKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVK------QGYCQGLLLPQVAPE 148
Query: 137 EGWTKVEAIDSLMRKAGFS 155
                ++ +     KAG S
Sbjct: 149 NDXDSIDFLSHTCXKAGLS 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1vaj_A	214	Hypothetical protein PH0010; alpha + beta fold, st	6e-45
1wsc_A	230	Hypothetical protein ST0229; structural genomics,	7e-42
1zq7_A	207	Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8	1e-39

>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1 Length = 214

 Score =  147 bits (373), Expect = 6e-45
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 14/161 (8%)

Query: 28  SPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSL 86
             +FVT  +     +  LRGCIG       L+      A+ SA+ D RFPP++  E+ +L
Sbjct: 45  MGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPRFPPVKLEEMDNL 104

Query: 87  ECTVSILTDFE-----TANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTK 141
              VS+LT  E             +VG  GLI+E          S   LP+V    GW +
Sbjct: 105 VVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVE------KGIYSGLLLPQVPVEWGWDE 158

Query: 142 VEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSD 182
            E +     KAG   P    L +  ++ ++ + +F   Y  
Sbjct: 159 EEFLAETCWKAGL--PPDCWLDEDTKVYKFTAEIFEEEYPR 197

>1wsc_A Hypothetical protein ST0229; structural genomics, function unknown protein, unknown function; 2.45A {Sulfolobus tokodaii} SCOP: d.309.1.1 Length = 230

 Score =  140 bits (353), Expect = 7e-42
 Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 15/162 (9%)

Query: 29  PLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLE 87
             FVT +         LRGCIG +EA   L       A+ +A  D RFPP+   E  ++ 
Sbjct: 56  LAFVTLETYYGNS-TSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNII 114

Query: 88  CTVSILTDFETANNYLDWE------VGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTK 141
             V++LT  +  +    WE      VG  GLI+E+         S   LP+V     W +
Sbjct: 115 IEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEYGI-----LYSGLLLPQVPMEYCWDE 169

Query: 142 VEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 183
              +     KAG        L  ++++ ++Q  +F       
Sbjct: 170 ETFLAETCIKAGL--EPDCWLNNKVKIKKFQGIIFREEKPKS 209

>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1 Length = 207

 Score =  133 bits (337), Expect = 1e-39
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 20/155 (12%)

Query: 28  SPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSL 86
             +FVT  +        LRGCIG       L     D A+++A +D RFP ++  E+ ++
Sbjct: 45  RGVFVTLTE-----GGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEMKNI 99

Query: 87  ECTVSILTDFETANNYLD-----WEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTK 141
              V+ILT  E  N          E+G HGLI++              LP+VA       
Sbjct: 100 LVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ------GYCQGLLLPQVAPENDMDS 153

Query: 142 VEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLF 176
           ++ +     KAG S    ++  K   +  ++  +F
Sbjct: 154 IDFLSHTCMKAGLSP---DAWVKGAEVYCFEGQIF 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
1vaj_A	214	Hypothetical protein PH0010; alpha + beta fold, st	100.0
1zq7_A	207	Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8	100.0
1wsc_A	230	Hypothetical protein ST0229; structural genomics,	100.0

>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1

Probab=100.00  E-value=1.2e-55  Score=377.59  Aligned_cols=152  Identities=29%  Similarity=0.394  Sum_probs=139.3

Q ss_pred             CCCCCCccceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCCCCCCCCcCcCCCceEEEEeecCcccc
Q 028676           21 CFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETA   99 (205)
Q Consensus        21 ~~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~v~~~Ai~AA~~DpRF~Pl~~~EL~~L~ieVSvLs~~e~~   99 (205)
                      +..+++++||||||++.+++.+|+||||||||+| +||+++|++||++|||+||||+||+++||++|.|+||||++||++
T Consensus        38 ~~~l~~~~g~FVTl~~~~~~~~g~LRGCIGt~~p~~~L~~~i~~~Ai~AA~~DpRF~Pl~~~EL~~l~ieVsvL~~~e~i  117 (214)
T 1vaj_A           38 PPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPRFPPVKLEEMDNLVVEVSVLTPPELI  117 (214)
T ss_dssp             CGGGGSBCEEEEEEEETTSCGGGTEEEEEEESSSCSBHHHHHHHHHHHHHHCCTTSCCCCGGGGGGEEEEEEEECCCEEC
T ss_pred             ChhhcCcccEEEEEEECcCCCCCceeeeecCCCccccHHHHHHHHHHHhccCCCCCCCCCHHHhcCcEEEEEEcCCcEEc
Confidence            3447889999999997543435899999999999 999999999999999999999999999999999999999999999


Q ss_pred             -----CCccCCccCceeeEEEEeCCCCCCcceeeeeccchhccCCCHHHHHHHHHHHcCCCCCCcccccCcEEEEEEEEE
Q 028676          100 -----NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQST  174 (205)
Q Consensus       100 -----~d~~d~~~G~hGlii~~~~~~~g~~~~atfLPqVa~Eq~w~~eefl~~L~~KAGl~~~~~~~~~~~i~v~ryq~~  174 (205)
                           +++.+|+||+|||+|++      +.++||||||||+|++||+++||++||+|||++++  +|.+++++++|||++
T Consensus       118 ~~~~~~~~~~~~~G~hGlii~~------g~~~g~~LPqV~~E~~W~~~e~l~~l~~KAG~~~d--~w~~~~~~l~rf~~~  189 (214)
T 1vaj_A          118 EGPPEERPRKIKVGRDGLIVEK------GIYSGLLLPQVPVEWGWDEEEFLAETCWKAGLPPD--CWLDEDTKVYKFTAE  189 (214)
T ss_dssp             CSCGGGGGGGCCTTTCEEEEEE------TTEEEEECTHHHHHHTCCHHHHHHHHHHHTTSCTT--GGGCTTSEEEEECEE
T ss_pred             ccccccCHHHcCCCCceEEEEe------CCeeEEECCCchhhcCCCHHHHHHHHHHHcCCCcc--cccCCCeEEEEEEEE
Confidence                 57789999999999999      79999999999999999999999999999999994  344678999999999


Q ss_pred             EEEeeh
Q 028676          175 LFALHY  180 (205)
Q Consensus       175 ~~~~~~  180 (205)
                      +|++..
T Consensus       190 ~f~E~~  195 (214)
T 1vaj_A          190 IFEEEY  195 (214)
T ss_dssp             EEEESS
T ss_pred             EEEEeC
Confidence            999843

>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1

Probab=100.00  E-value=1.5e-55  Score=375.40  Aligned_cols=145  Identities=27%  Similarity=0.421  Sum_probs=137.3

Q ss_pred             CCCCCCccceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCCCCCCCCcCcCCCceEEEEeecCcccc
Q 028676           21 CFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETA   99 (205)
Q Consensus        21 ~~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~v~~~Ai~AA~~DpRF~Pl~~~EL~~L~ieVSvLs~~e~~   99 (205)
                      +..+++++||||||++     +|+|||||||++| +||+++|++||++|||+||||+||+++||++|.|+||||++|+++
T Consensus        38 ~~~l~~~~g~FVTl~~-----~g~LRGCIGt~~p~~~L~~~i~~~Ai~AA~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~~  112 (207)
T 1zq7_A           38 SPVFEEYRGVFVTLTE-----GGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEMKNILVEVTILTQPEKI  112 (207)
T ss_dssp             CGGGGSBCCEEEEEEE-----TTEEEEEEEECSCCSBHHHHHHHHHHHHHHSCTTSCCCCGGGGGGCEEEEEEECCCEEC
T ss_pred             ChhhcCcccEEEEEEE-----CCeEEEeeccCCccccHHHHHHHHHHHHccCCCCCCCCCHHHHcCcEEEEEEccCCEEc
Confidence            3457889999999998     5899999999999 899999999999999999999999999999999999999999999


Q ss_pred             -----CCccCCccCceeeEEEEeCCCCCCcceeeeeccchhccCCCHHHHHHHHHHHcCCCCCCcccccCcEEEEEEEEE
Q 028676          100 -----NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQST  174 (205)
Q Consensus       100 -----~d~~d~~~G~hGlii~~~~~~~g~~~~atfLPqVa~Eq~w~~eefl~~L~~KAGl~~~~~~~~~~~i~v~ryq~~  174 (205)
                           +++.+|+||+|||+|++      ++++||||||||+|||||+++||++||+|||+++   +.|.++++++|||++
T Consensus       113 ~~~~~~~~~~~~~G~hGlii~~------g~~~g~lLPqVa~E~gWd~eefl~~l~~KAG~~~---~~w~~~~~v~rf~~~  183 (207)
T 1zq7_A          113 NASPKELPDKVEIGKHGLIVKQ------GYCQGLLLPQVAPENDMDSIDFLSHTCMKAGLSP---DAWVKGAEVYCFEGQ  183 (207)
T ss_dssp             CSCTTTHHHHCCTTTCEEEEEE------TTEEEEECTTHHHHTTCCHHHHHHHHHHHTTBCG---GGGTTTCEEEEECEE
T ss_pred             ccccccCHHHcCCCCceEEEEE------CCeeeEECCcchhhcCCCHHHHHHHHHHhcCCCh---hhccCceEEEEEEEE
Confidence                 77889999999999999      8999999999999999999999999999999999   566669999999999


Q ss_pred             EEEee
Q 028676          175 LFALH  179 (205)
Q Consensus       175 ~~~~~  179 (205)
                      +|++.
T Consensus       184 ~~~E~  188 (207)
T 1zq7_A          184 IFKEK  188 (207)
T ss_dssp             EEEES
T ss_pred             EEEEe
Confidence            99983

>1wsc_A Hypothetical protein ST0229; structural genomics, function unknown protein, unknown function; 2.45A {Sulfolobus tokodaii} SCOP: d.309.1.1

Probab=100.00  E-value=2.1e-54  Score=373.31  Aligned_cols=153  Identities=27%  Similarity=0.407  Sum_probs=139.1

Q ss_pred             CCCCCCccceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCCCCCCCCcCcCCCceEEEEeecCcccc
Q 028676           21 CFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETA   99 (205)
Q Consensus        21 ~~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~v~~~Ai~AA~~DpRF~Pl~~~EL~~L~ieVSvLs~~e~~   99 (205)
                      +..+++++||||||++.+ +.+|+||||||||+| +||+++|++||++|||+||||+||+++||++|.|+||||++||++
T Consensus        48 ~~~l~~~~g~FVTl~~~~-~~~g~LRGCIGt~~p~~~L~~~i~~~Ai~AA~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~i  126 (230)
T 1wsc_A           48 DPILNKKGLAFVTLETYY-GNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQEI  126 (230)
T ss_dssp             CGGGGSEEEEEEEEEEEC-SSCEEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSCCCCHHHHTTEEEEEEEECCCEEC
T ss_pred             chhhcCcccEEEEEEECC-CCCCceeeeecCCCccccHHHHHHHHHHHhccCCCCCCCCCHHHHcCcEEEEEEcCCcEEc
Confidence            346788999999999743 225899999999999 899999999999999999999999999999999999999999999


Q ss_pred             C------CccCCccCceeeEEEEeCCCCCCcceeeeeccchhccCCCHHHHHHHHHHHcCCCCCCcccccCcEEEEEEEE
Q 028676          100 N------NYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQS  173 (205)
Q Consensus       100 ~------d~~d~~~G~hGlii~~~~~~~g~~~~atfLPqVa~Eq~w~~eefl~~L~~KAGl~~~~~~~~~~~i~v~ryq~  173 (205)
                      +      ++.+|+||+|||+|++     |++++||||||||.|++||+++||++||+|||++++  +|..++++++|||+
T Consensus       127 ~~~~~~~~~~~~~~G~hGlii~~-----g~~~~g~lLPqV~~e~~w~~eefl~~l~~KAGl~~~--~w~~~~~~v~rf~~  199 (230)
T 1wsc_A          127 DVENRWELPKKIKVGEDGLIVEY-----GILYSGLLLPQVPMEYCWDEETFLAETCIKAGLEPD--CWLNNKVKIKKFQG  199 (230)
T ss_dssp             CCSCGGGGGGGCCTTTCEEEEEE-----TTTEEEEECTHHHHHTTCCHHHHHHHHHHHHTSCTT--GGGCTTSEEEEECE
T ss_pred             ccCCcccCHHHcCCCCCeEEEee-----CCCceEEECCCcccccCCCHHHHHHHHHHhCCCCCc--ccccCceEEEEEEE
Confidence            4      6789999999999999     349999999999999999999999999999999995  44456899999999


Q ss_pred             EEEEeehH
Q 028676          174 TLFALHYS  181 (205)
Q Consensus       174 ~~~~~~~~  181 (205)
                      ++|++.+.
T Consensus       200 ~~f~E~~p  207 (230)
T 1wsc_A          200 IIFREEKP  207 (230)
T ss_dssp             EEEEESST
T ss_pred             EEEEecCC
Confidence            99998554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d1vaja1	203	d.309.1.1 (A:3-205) Hypothetical protein PH0010 {A	5e-49
d1wsca1	225	d.309.1.1 (A:3-227) Hypothetical protein ST0229 {S	8e-46
d1zq7a1	199	d.309.1.1 (A:1-199) Hypothetical protein MM0484 {M	1e-42

>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 203

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein PH0010
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  156 bits (396), Expect = 5e-49
 Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 14/159 (8%)

Query: 28  SPLFVTWKKVVNGGEPRLRGCIGTLEARC-LINGFKDYALTSALKDRRFPPIQARELPSL 86
             +FVT  +     +  LRGCIG       L+      A+ SA+ D RFPP++  E+ +L
Sbjct: 43  MGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPRFPPVKLEEMDNL 102

Query: 87  ECTVSILTDFETANN-----YLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTK 141
              VS+LT  E             +VG  GLI+E          S   LP+V    GW +
Sbjct: 103 VVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK------GIYSGLLLPQVPVEWGWDE 156

Query: 142 VEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHY 180
            E +     KAG          +  ++ ++ + +F   Y
Sbjct: 157 EEFLAETCWKAGLPPDCWLD--EDTKVYKFTAEIFEEEY 193

>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus tokodaii [TaxId: 111955]} Length = 225

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein ST0229
species: Sulfolobus tokodaii [TaxId: 111955]

 Score =  148 bits (376), Expect = 8e-46
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 15/156 (9%)

Query: 28  SPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSL 86
              FVT +    G    LRGCIG +EA   L       A+ +A  D RFPP+   E  ++
Sbjct: 53  GLAFVTLETY-YGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNI 111

Query: 87  ECTVSILTDFETANNYLDWE------VGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWT 140
              V++LT  +  +    WE      VG  GLI+E+         S   LP+V     W 
Sbjct: 112 IIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEYGI-----LYSGLLLPQVPMEYCWD 166

Query: 141 KVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLF 176
           +   +     KAG        L  ++++ ++Q  +F
Sbjct: 167 EETFLAETCIKAGLEPDCW--LNNKVKIKKFQGIIF 200

>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484 {Methanosarcina mazei [TaxId: 2209]} Length = 199

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein MM0484
species: Methanosarcina mazei [TaxId: 2209]

 Score =  139 bits (353), Expect = 1e-42
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 20/152 (13%)

Query: 31  FVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLECT 89
           FVT  +   G    LRGCIG       L     D A+++A +D RFP ++  E+ ++   
Sbjct: 48  FVTLTE--GG---LLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEMKNILVE 102

Query: 90  VSILTDFETANNYL-----DWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEA 144
           V+ILT  E  N          E+G HGLI++              LP+VA       ++ 
Sbjct: 103 VTILTQPEKINASPKELPDKVEIGKHGLIVKQ------GYCQGLLLPQVAPENDMDSIDF 156

Query: 145 IDSLMRKAGFSGPITESLRKRIRLTRYQSTLF 176
           +     KAG S    ++  K   +  ++  +F
Sbjct: 157 LSHTCMKAGLSP---DAWVKGAEVYCFEGQIF 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1vaja1	203	Hypothetical protein PH0010 {Archaeon Pyrococcus h	100.0
d1zq7a1	199	Hypothetical protein MM0484 {Methanosarcina mazei	100.0
d1wsca1	225	Hypothetical protein ST0229 {Sulfolobus tokodaii [	100.0

>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein PH0010
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.2e-55  Score=373.07  Aligned_cols=159  Identities=28%  Similarity=0.362  Sum_probs=142.7

Q ss_pred             cccccCCCCCCCccceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCCCCCCCCcCcCCCceEEEEee
Q 028676           15 DYVLVCCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSIL   93 (205)
Q Consensus        15 ~~~~~~~~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~v~~~Ai~AA~~DpRF~Pl~~~EL~~L~ieVSvL   93 (205)
                      +.+...|..+..++||||||++.+.+.+|+||||||+++| +||+++|++||++|||+||||+||+++||++|+|+||||
T Consensus        30 ~~~~~~~~~l~~~~g~FVTl~~~~~~~~g~LRGCIG~~~p~~pL~~~v~~~A~~AA~~DpRF~Pl~~~El~~l~ieVsvL  109 (203)
T d1vaja1          30 EPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPRFPPVKLEEMDNLVVEVSVL  109 (203)
T ss_dssp             CCCTTCCGGGGSBCEEEEEEEETTSCGGGTEEEEEEESSSCSBHHHHHHHHHHHHHHCCTTSCCCCGGGGGGEEEEEEEE
T ss_pred             CCCccCCHHHcCceEEEEEEEEcccCCCCceeeeecccCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHcCcEEEEEEC
Confidence            4444446678899999999998543335899999999999 899999999999999999999999999999999999999


Q ss_pred             cCccccC-----CccCCccCceeeEEEEeCCCCCCcceeeeeccchhccCCCHHHHHHHHHHHcCCCCCCcccccCcEEE
Q 028676           94 TDFETAN-----NYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRL  168 (205)
Q Consensus        94 s~~e~~~-----d~~d~~~G~hGlii~~~~~~~g~~~~atfLPqVa~Eq~w~~eefl~~L~~KAGl~~~~~~~~~~~i~v  168 (205)
                      +++++++     ++.+|++|+|||+|++      ++++||||||||.||+||+++||++||+|||++++  .|.++.+++
T Consensus       110 s~~e~i~~~~~~~~~~~~~G~~Glii~~------g~~~g~fLP~Va~e~~w~~~~fl~~l~~KAGl~~~--~w~~~~~~~  181 (203)
T d1vaja1         110 TPPELIEGPPEERPRKIKVGRDGLIVEK------GIYSGLLLPQVPVEWGWDEEEFLAETCWKAGLPPD--CWLDEDTKV  181 (203)
T ss_dssp             CCCEECCSCGGGGGGGCCTTTCEEEEEE------TTEEEEECTHHHHHHTCCHHHHHHHHHHHTTSCTT--GGGCTTSEE
T ss_pred             CCCEECCCCchhCHHHccCcceEEEEEe------CCcceEECCCcccccCCCHHHHHHHHHHHcCCCCC--cCCCCCeEE
Confidence            9999997     3567999999999999      89999999999999999999999999999999994  333568999


Q ss_pred             EEEEEEEEEeehH
Q 028676          169 TRYQSTLFALHYS  181 (205)
Q Consensus       169 ~ryq~~~~~~~~~  181 (205)
                      +||++++|++.+.
T Consensus       182 ~rf~~~~f~E~~p  194 (203)
T d1vaja1         182 YKFTAEIFEEEYP  194 (203)
T ss_dssp             EEECEEEEEESST
T ss_pred             EEEEEEEEEecCC
Confidence            9999999999764

>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein MM0484
species: Methanosarcina mazei [TaxId: 2209]

Probab=100.00  E-value=6.8e-55  Score=367.47  Aligned_cols=146  Identities=27%  Similarity=0.425  Sum_probs=137.7

Q ss_pred             CCCCCCccceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCCCCCCCCcCcCCCceEEEEeecCcccc
Q 028676           21 CFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETA   99 (205)
Q Consensus        21 ~~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~v~~~Ai~AA~~DpRF~Pl~~~EL~~L~ieVSvLs~~e~~   99 (205)
                      ++.+.+++||||||++     +|+|||||||+.| +||+++|++||++|||+||||+||+.+||++|+|+||||++++++
T Consensus        38 ~~~l~~~~g~FVTL~~-----~g~LRGCIGs~~p~~pL~~~v~~~A~~AA~~DpRF~pl~~~El~~l~ieVsvLs~~e~i  112 (199)
T d1zq7a1          38 SPVFEEYRGVFVTLTE-----GGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEMKNILVEVTILTQPEKI  112 (199)
T ss_dssp             CGGGGSBCCEEEEEEE-----TTEEEEEEEECSCCSBHHHHHHHHHHHHHHSCTTSCCCCGGGGGGCEEEEEEECCCEEC
T ss_pred             ChhHccceeEEEEEEE-----CCEEeEeecccCcchhHHHHHHHHHHHHHhCCCCCCCCCHHHhcCCEEEEEECCCcEEc
Confidence            5678899999999999     5899999999999 999999999999999999999999999999999999999999999


Q ss_pred             CC-----ccCCccCceeeEEEEeCCCCCCcceeeeeccchhccCCCHHHHHHHHHHHcCCCCCCcccccCcEEEEEEEEE
Q 028676          100 NN-----YLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQST  174 (205)
Q Consensus       100 ~d-----~~d~~~G~hGlii~~~~~~~g~~~~atfLPqVa~Eq~w~~eefl~~L~~KAGl~~~~~~~~~~~i~v~ryq~~  174 (205)
                      +.     +.+|+||+|||+|++      ++++||||||||.||+||+++||++||+|||+++   ++|.++++++||+++
T Consensus       113 ~~~~~el~~~l~~g~~Glii~~------g~~~g~fLP~V~~e~~~d~~efL~~l~~KAGlp~---d~w~~~~~~~rf~~~  183 (199)
T d1zq7a1         113 NASPKELPDKVEIGKHGLIVKQ------GYCQGLLLPQVAPENDMDSIDFLSHTCMKAGLSP---DAWVKGAEVYCFEGQ  183 (199)
T ss_dssp             CSCTTTHHHHCCTTTCEEEEEE------TTEEEEECTTHHHHTTCCHHHHHHHHHHHTTBCG---GGGTTTCEEEEECEE
T ss_pred             cCChhhhHHHhccccceEEEEe------CCcceEECCcchhhcCCCHHHHHHHHHHHcCCCc---ccccCCcEEEEEEEE
Confidence            63     467999999999999      7999999999999999999999999999999999   677789999999999


Q ss_pred             EEEeeh
Q 028676          175 LFALHY  180 (205)
Q Consensus       175 ~~~~~~  180 (205)
                      +|++.-
T Consensus       184 ~f~E~~  189 (199)
T d1zq7a1         184 IFKEKE  189 (199)
T ss_dssp             EEEESS
T ss_pred             EEEEcC
Confidence            999863

>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein ST0229
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=100.00  E-value=3e-53  Score=363.05  Aligned_cols=153  Identities=26%  Similarity=0.392  Sum_probs=137.5

Q ss_pred             CCCCCCCccceEEEEEEeccCCCCcceeeecccCc-ccHHHHHHHHHHHhhhcCCCCCCCCcCcCCCceEEEEeecCccc
Q 028676           20 CCFSYSGFSPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFET   98 (205)
Q Consensus        20 ~~~~~~~~~g~FVTl~~~~~~~~~~LRGCIGt~~p-~pL~~~v~~~Ai~AA~~DpRF~Pl~~~EL~~L~ieVSvLs~~e~   98 (205)
                      .++.+++++||||||++....+ |+|||||||+.| +||+++|++||++|||+||||+||+++||++|+|+||||+++++
T Consensus        45 ~~~~L~~~~g~FVTl~~~~~~~-g~LRGCIGt~~~~~pL~~~v~~~A~~AA~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~  123 (225)
T d1wsca1          45 NDPILNKKGLAFVTLETYYGNS-TSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQE  123 (225)
T ss_dssp             CCGGGGSEEEEEEEEEEECSSC-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSCCCCHHHHTTEEEEEEEECCCEE
T ss_pred             CchhhcCceeEEEEEEEccCCC-CceeEEeccCCcchhHHHHHHHHHHHHHhCCCCcCCCCHHHHhCeEEEEEECCCCEE
Confidence            3456889999999999755444 799999999999 89999999999999999999999999999999999999999999


Q ss_pred             cCCc------cCCccCceeeEEEEeCCCCCCcceeeeeccchhccCCCHHHHHHHHHHHcCCCCCCcccccCcEEEEEEE
Q 028676           99 ANNY------LDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQ  172 (205)
Q Consensus        99 ~~d~------~d~~~G~hGlii~~~~~~~g~~~~atfLPqVa~Eq~w~~eefl~~L~~KAGl~~~~~~~~~~~i~v~ryq  172 (205)
                      ++..      .+++||+|||+|++     |++++||||||||.||+||+++||++||+|||++++  .|.+++++++||+
T Consensus       124 i~~~~~~el~~~l~~G~hGlii~~-----g~~~~g~fLPqVa~e~~wd~e~fL~~l~~KAGl~~d--~W~~~~~~v~rf~  196 (225)
T d1wsca1         124 IDVENRWELPKKIKVGEDGLIVEY-----GILYSGLLLPQVPMEYCWDEETFLAETCIKAGLEPD--CWLNNKVKIKKFQ  196 (225)
T ss_dssp             CCCSCGGGGGGGCCTTTCEEEEEE-----TTTEEEEECTHHHHHTTCCHHHHHHHHHHHHTSCTT--GGGCTTSEEEEEC
T ss_pred             CCCCChHHhHHhcCCCcceEEEEE-----CCcceEEECCCcccccCCCHHHHHHHHHHhcCCCCC--ccCCCCeEEEEEE
Confidence            9854      34679999999999     447999999999999999999999999999999994  3335689999999


Q ss_pred             EEEEEeeh
Q 028676          173 STLFALHY  180 (205)
Q Consensus       173 ~~~~~~~~  180 (205)
                      +++|++.-
T Consensus       197 ~~~F~E~~  204 (225)
T d1wsca1         197 GIIFREEK  204 (225)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEEcC
Confidence            99999853