Citrus Sinensis ID: 028682

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MTNAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEccccccccccEEEEEccccEEcEEEcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccccEEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
mtnaepinifhgsyntdnppirlsyhhgnhynslvdprrmtvgaglgfsclrgtnvdKDQVKAAIKAQQDQQIDNALLaegrfysdlelTEKEIECMVMEVSRAeylagdnlkqqlghkesstsgaepsssgarsscsetkleggkgcelsdTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLEtgsssrrkgkate
Flexible Loop (DISEMBL)
MTNAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKesstsgaepsssgarsSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLletgsssrrkgkate
Low Complexity Region (SEG)
MTNAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNvdkdqvkaaikaqqdqqidNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKesstsgaepsssgaRSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE
Disordered region (IsUnstruct)
*******NIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLA********************************************TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE*************
Disordered Region (DISOPRED)
**NAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRG****************************************IECMVMEVSRA********************************************************MVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL**************
Disordered Region (DISEMBL)
MTNAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQ********************************GCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETG***********
Disordered Region (DISPRO)
***AEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNL******************************************LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q08BW0	560	OTU domain-containing pro	yes	no	0.502	0.183	0.378	5e-16
Q640H3	518	OTU domain-containing pro	N/A	no	0.502	0.198	0.359	2e-15
Q3U2S4	566	OTU domain-containing pro	yes	no	0.502	0.181	0.368	2e-15
Q96G74	571	OTU domain-containing pro	yes	no	0.502	0.180	0.368	2e-15
Q2YDU3	566	OTU domain-containing pro	no	no	0.502	0.181	0.368	3e-15
Q7ZX21	513	OTU domain-containing pro	N/A	no	0.502	0.200	0.359	6e-15
Q6GL44	518	OTU domain-containing pro	yes	no	0.502	0.198	0.359	7e-15

>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2 SV=1

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 60/103 (58%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPIN FHG +  ++ PIR+SYH   HYNS+V+P + T+G GLG    +    D+  +K A
Sbjct: 302 EPINTFHGIHQNNDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPAFKPGFADQSLMKNA 361

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
           IK  ++  I+  +L + +  +D E T + IE  V   S  ++L
Sbjct: 362 IKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 404

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 61/103 (59%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPIN FHG    ++ PIR+SYH   HYNS+V+P + T+G GLG    +  + ++  +K+A
Sbjct: 262 EPINTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGHAEQSLMKSA 321

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
           I+  ++  I+  +L + +  +D E T + IE  V   S  ++L
Sbjct: 322 IRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 364

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 60/103 (58%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPIN FHG +  ++ PIR+SYH   HYNS+V+P + T+G GLG    +    ++  +K A
Sbjct: 304 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMKNA 363

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
           IK  ++  I+  +L + +  +D E T + IE  V   S  ++L
Sbjct: 364 IKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 406

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 60/103 (58%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPIN FHG +  ++ PIR+SYH   HYNS+V+P + T+G GLG    +    ++  +K A
Sbjct: 309 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMKNA 368

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
           IK  ++  I+  +L + +  +D E T + IE  V   S  ++L
Sbjct: 369 IKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 411

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q2YDU3|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 60/103 (58%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPIN FHG +  ++ PIR+SYH   HYNS+V+P + T+G GLG    +    ++  +K A
Sbjct: 304 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMKNA 363

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
           IK  ++  I+  +L + +  +D E T + IE  V   S  ++L
Sbjct: 364 IKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 406

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2 SV=1

 Score = 80.9 bits (198), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 60/103 (58%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPIN FHG    ++ PIR+SYH   HYNS+V+P + T+G GLG    +    ++  +K+A
Sbjct: 257 EPINTFHGIQKNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGYAEQSLMKSA 316

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
           I+  ++  I+  +L + +  +D E T + IE  V   S  ++L
Sbjct: 317 IRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 359

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 60/103 (58%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPIN FHG    ++ PIR+SYH   HYNS+V+P + T+G GLG    +    ++  +K+A
Sbjct: 262 EPINTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMKSA 321

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
           I+  ++  I+  +L + +  +D E T + IE  V   S  ++L
Sbjct: 322 IRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 364

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
255565701	534	expressed protein, putative [Ricinus com	0.980	0.376	0.905	6e-97
296084879	502	unnamed protein product [Vitis vinifera]	0.980	0.400	0.862	1e-94
225464886	528	PREDICTED: uncharacterized protein LOC10	0.980	0.380	0.862	1e-94
147860016	244	hypothetical protein VITISV_021902 [Viti	0.980	0.823	0.841	4e-93
224104891	534	predicted protein [Populus trichocarpa]	0.980	0.376	0.841	9e-89
356542770	519	PREDICTED: uncharacterized protein LOC10	0.965	0.381	0.806	6e-84
356539236	520	PREDICTED: uncharacterized protein LOC10	0.965	0.380	0.801	7e-84
449492795	542	PREDICTED: uncharacterized LOC101208627	0.985	0.372	0.779	2e-81
357453181	253	OTU domain-containing protein [Medicago	0.965	0.782	0.825	6e-81
449443464	539	PREDICTED: uncharacterized protein LOC10	0.975	0.371	0.777	6e-80

>gi|255565701|ref|XP_002523840.1| expressed protein, putative [Ricinus communis] gi|223536928|gb|EEF38566.1| expressed protein, putative [Ricinus communis]

 Score =  358 bits (919), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 182/201 (90%), Positives = 186/201 (92%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPINIFHGSYNTD PPIRLSYHHGNHYNSLVDPRR+TVGAGLGFSCLRGTNVDKDQVKAA
Sbjct: 334 EPINIFHGSYNTDTPPIRLSYHHGNHYNSLVDPRRLTVGAGLGFSCLRGTNVDKDQVKAA 393

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTS 124
           IKAQQDQQIDNALLAEGRFYSDLELTEKEIE MVME SRAEYLA D  KQQL HKESSTS
Sbjct: 394 IKAQQDQQIDNALLAEGRFYSDLELTEKEIERMVMEASRAEYLANDKFKQQLCHKESSTS 453

Query: 125 GAEPSSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVD 184
           GAEPSSSGARSS SETK+EG +   L DTVLS+SMQMVLSMGFSYLQ IEAYSIFGDDVD
Sbjct: 454 GAEPSSSGARSSDSETKVEGTRTNSLQDTVLSSSMQMVLSMGFSYLQAIEAYSIFGDDVD 513

Query: 185 SMVCYLLETGSSSRRKGKATE 205
           SMVCYLLET SSSRRKGKATE
Sbjct: 514 SMVCYLLETASSSRRKGKATE 534

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084879|emb|CBI28288.3| unnamed protein product [Vitis vinifera]

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 175/203 (86%), Positives = 183/203 (90%), Gaps = 2/203 (0%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPINIFHGSY+TD PPIRLSYHHGNHYNSLVDPRR+T+GAGLGFS LRG NVDKDQVKAA
Sbjct: 300 EPINIFHGSYDTDTPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRGVNVDKDQVKAA 359

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKE-SST 123
           IKAQQDQQIDNALLAEGRFYSDLELTEKEIE MVME SRAEYLA D  K QLG +E SST
Sbjct: 360 IKAQQDQQIDNALLAEGRFYSDLELTEKEIERMVMEASRAEYLADDKFKSQLGCRESSST 419

Query: 124 SGAEPSSSGARSSCSETKLEGGKGCE-LSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDD 182
           SGAEPSSSGAR S SETKLEGG+    L DTVLS+SMQMVLSMGFSYLQVIEAYSIFGDD
Sbjct: 420 SGAEPSSSGARPSGSETKLEGGREQHGLPDTVLSSSMQMVLSMGFSYLQVIEAYSIFGDD 479

Query: 183 VDSMVCYLLETGSSSRRKGKATE 205
            +SM CYL+ETGSSSRRKGKATE
Sbjct: 480 AESMACYLVETGSSSRRKGKATE 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464886|ref|XP_002273209.1| PREDICTED: uncharacterized protein LOC100246727 [Vitis vinifera]

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 175/203 (86%), Positives = 183/203 (90%), Gaps = 2/203 (0%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPINIFHGSY+TD PPIRLSYHHGNHYNSLVDPRR+T+GAGLGFS LRG NVDKDQVKAA
Sbjct: 326 EPINIFHGSYDTDTPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRGVNVDKDQVKAA 385

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKE-SST 123
           IKAQQDQQIDNALLAEGRFYSDLELTEKEIE MVME SRAEYLA D  K QLG +E SST
Sbjct: 386 IKAQQDQQIDNALLAEGRFYSDLELTEKEIERMVMEASRAEYLADDKFKSQLGCRESSST 445

Query: 124 SGAEPSSSGARSSCSETKLEGGKGCE-LSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDD 182
           SGAEPSSSGAR S SETKLEGG+    L DTVLS+SMQMVLSMGFSYLQVIEAYSIFGDD
Sbjct: 446 SGAEPSSSGARPSGSETKLEGGREQHGLPDTVLSSSMQMVLSMGFSYLQVIEAYSIFGDD 505

Query: 183 VDSMVCYLLETGSSSRRKGKATE 205
            +SM CYL+ETGSSSRRKGKATE
Sbjct: 506 AESMACYLVETGSSSRRKGKATE 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860016|emb|CAN81048.1| hypothetical protein VITISV_021902 [Vitis vinifera]

 Score =  346 bits (887), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 175/208 (84%), Positives = 183/208 (87%), Gaps = 7/208 (3%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPINIFHGSY+TD PPIRLSYHHGNHYNSLVDPRR+T+GAGLGFS LRG NVDKDQVKAA
Sbjct: 37  EPINIFHGSYDTDTPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRGVNVDKDQVKAA 96

Query: 65  IKAQQDQQIDN-----ALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHK 119
           IKAQQDQQIDN     ALLAEGRFYSDLELTEKEIE MVME SRAEYLA D  K QLG +
Sbjct: 97  IKAQQDQQIDNASTYIALLAEGRFYSDLELTEKEIERMVMEASRAEYLADDKFKSQLGCR 156

Query: 120 E-SSTSGAEPSSSGARSSCSETKLEGGKGCE-LSDTVLSNSMQMVLSMGFSYLQVIEAYS 177
           E SSTSGAEPSSSGAR S SETKLEGG+    L DTVLS+SMQMVLSMGFSYLQVIEAYS
Sbjct: 157 ESSSTSGAEPSSSGARPSGSETKLEGGREQHGLPDTVLSSSMQMVLSMGFSYLQVIEAYS 216

Query: 178 IFGDDVDSMVCYLLETGSSSRRKGKATE 205
           IFGDD +SM CYL+ETGSSSRRKGKATE
Sbjct: 217 IFGDDAESMACYLVETGSSSRRKGKATE 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104891|ref|XP_002313608.1| predicted protein [Populus trichocarpa] gi|222850016|gb|EEE87563.1| predicted protein [Populus trichocarpa]

 Score =  331 bits (849), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 170/202 (84%), Positives = 183/202 (90%), Gaps = 1/202 (0%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPINIFHGSYNTD PPIRLSYHHGNHYNSLV+PRR T+GAGLGFSCL+G +VD+DQ+KAA
Sbjct: 333 EPINIFHGSYNTDTPPIRLSYHHGNHYNSLVNPRRSTIGAGLGFSCLQGASVDRDQIKAA 392

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTS 124
           IKAQQDQQI+NALLAEGRFYSDLELTEKEIE MVME SRAEYLA +  K QLG KESST+
Sbjct: 393 IKAQQDQQINNALLAEGRFYSDLELTEKEIERMVMEASRAEYLADNKFKPQLGRKESSTA 452

Query: 125 GAEPSSSGARSSCSET-KLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDV 183
           GAEPSSS ARSS SET K++G +     DTVLS+SMQMVLSMGFSYLQVIEAYSIFGDDV
Sbjct: 453 GAEPSSSSARSSASETSKVDGVREHGSQDTVLSSSMQMVLSMGFSYLQVIEAYSIFGDDV 512

Query: 184 DSMVCYLLETGSSSRRKGKATE 205
           DSMVCYLLETGSSSRRKGKATE
Sbjct: 513 DSMVCYLLETGSSSRRKGKATE 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542770|ref|XP_003539838.1| PREDICTED: uncharacterized protein LOC100809162 [Glycine max]

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 163/202 (80%), Positives = 175/202 (86%), Gaps = 4/202 (1%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPINIFHGSYNTD PPIRLSYHHGNHYNSLVDPRR+T+GAGLGFS LRGTNVDKDQVKAA
Sbjct: 321 EPINIFHGSYNTDMPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRGTNVDKDQVKAA 380

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTS 124
           IKAQQD+QI+NALLAEGRFYSDLELTEKEIE MV+EVSRAEYLA    KQQLG +ESSTS
Sbjct: 381 IKAQQDKQINNALLAEGRFYSDLELTEKEIERMVIEVSRAEYLADSTFKQQLGDRESSTS 440

Query: 125 GAEP-SSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDV 183
            AEP SS    SS ++ K E GK      + LS+ MQM+LSMGFSY+Q IEAYSIFGDDV
Sbjct: 441 NAEPSSSGATGSSGTDRKTEHGKE---HGSDLSSGMQMLLSMGFSYMQAIEAYSIFGDDV 497

Query: 184 DSMVCYLLETGSSSRRKGKATE 205
           DSMVCYLLETGSSSRRKGKATE
Sbjct: 498 DSMVCYLLETGSSSRRKGKATE 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539236|ref|XP_003538105.1| PREDICTED: uncharacterized protein LOC100780250 [Glycine max]

 Score =  315 bits (807), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 162/202 (80%), Positives = 176/202 (87%), Gaps = 4/202 (1%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPINIFHGSYNTD PPIRLSYHHGNHYNSLVDPRR+T+GAGLGFS LRGTNVDKD+VKAA
Sbjct: 322 EPINIFHGSYNTDTPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRGTNVDKDKVKAA 381

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTS 124
           IKAQQDQQI+NALLAEGRFYSDLELTEKEIE MV+EVSRAEYLA    KQQLG++ESSTS
Sbjct: 382 IKAQQDQQINNALLAEGRFYSDLELTEKEIERMVIEVSRAEYLADSAFKQQLGNRESSTS 441

Query: 125 GAEP-SSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDV 183
            AEP SS    SS ++ K E G+      + LS+ MQM+LSMGFSY+Q IEAYSIFGDDV
Sbjct: 442 NAEPSSSGATGSSGTDRKTEHGRE---HGSDLSSGMQMLLSMGFSYMQAIEAYSIFGDDV 498

Query: 184 DSMVCYLLETGSSSRRKGKATE 205
           DSMVCYLLETGSSSRRKGKATE
Sbjct: 499 DSMVCYLLETGSSSRRKGKATE 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492795|ref|XP_004159103.1| PREDICTED: uncharacterized LOC101208627 [Cucumis sativus]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 159/204 (77%), Positives = 180/204 (88%), Gaps = 2/204 (0%)

Query: 2   TNAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQV 61
           +NAEPINIFHG+Y TD PPIRLSYHHGNHYNSLVDPRR+ +GAGLGFS LRG NVDKD+V
Sbjct: 341 SNAEPINIFHGNYATDLPPIRLSYHHGNHYNSLVDPRRLAIGAGLGFSSLRGANVDKDKV 400

Query: 62  KAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKES 121
           KAA+KAQQDQQ+DNALLA+GR++SDLE+TEKEIE MVME SRAEYLA  +LKQQL  +++
Sbjct: 401 KAALKAQQDQQLDNALLAQGRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDN 460

Query: 122 STSGAEPSSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGD 181
           STSGAEPSSSGARSS SE   +   G +  ++VLSN M+ VLSMGFSYLQVIEAYSIFG+
Sbjct: 461 STSGAEPSSSGARSSGSEGNCKRESGVQ--ESVLSNGMRTVLSMGFSYLQVIEAYSIFGE 518

Query: 182 DVDSMVCYLLETGSSSRRKGKATE 205
           DVDSMVCYLLETG SSRRKGKATE
Sbjct: 519 DVDSMVCYLLETGDSSRRKGKATE 542

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453181|ref|XP_003596867.1| OTU domain-containing protein [Medicago truncatula] gi|355485915|gb|AES67118.1| OTU domain-containing protein [Medicago truncatula]

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 166/201 (82%), Positives = 181/201 (90%), Gaps = 3/201 (1%)

Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
           EPIN FHGSY+TD PP+RLS+HHGNHYNSLVDPRR T+GAGLGFS LRGTNVDKDQVKAA
Sbjct: 56  EPINTFHGSYDTDTPPVRLSFHHGNHYNSLVDPRRPTIGAGLGFSSLRGTNVDKDQVKAA 115

Query: 65  IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTS 124
           IK+QQDQQIDNALLAEGRFYSDLELTEKEIE  VME SRAEYLAG   KQQLG++ESSTS
Sbjct: 116 IKSQQDQQIDNALLAEGRFYSDLELTEKEIELAVMEASRAEYLAGGTFKQQLGNRESSTS 175

Query: 125 GAEPSSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVD 184
            AEPSSSGARSS S+ K+E GKG   +++ LS+SM M+LSMGFSYLQ IEAYSIFGDDVD
Sbjct: 176 TAEPSSSGARSSGSDPKMESGKG---NNSNLSSSMNMLLSMGFSYLQAIEAYSIFGDDVD 232

Query: 185 SMVCYLLETGSSSRRKGKATE 205
           SM+CYLLETGSSSRRKGKATE
Sbjct: 233 SMICYLLETGSSSRRKGKATE 253

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443464|ref|XP_004139497.1| PREDICTED: uncharacterized protein LOC101208627 [Cucumis sativus]

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 157/202 (77%), Positives = 177/202 (87%), Gaps = 2/202 (0%)

Query: 4   AEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKA 63
            EPINIFHG+Y TD PPIRLSYHHGNHYNSLVDPRR+ +GAGLGFS LRG NVDKD+VKA
Sbjct: 340 TEPINIFHGNYATDLPPIRLSYHHGNHYNSLVDPRRLAIGAGLGFSSLRGANVDKDKVKA 399

Query: 64  AIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESST 123
           A+KAQQDQQ+DNALLA+GR++SDLE+TEKEIE MVME SRAEYLA  +LKQQL  +++ST
Sbjct: 400 ALKAQQDQQLDNALLAQGRYFSDLEVTEKEIEQMVMEASRAEYLAKYSLKQQLDRRDNST 459

Query: 124 SGAEPSSSGARSSCSETKLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDV 183
           SGAEPSSSGARSS SE   +   G  + ++VLSN M+ VLSMGFSYLQVIEAYSIFG+DV
Sbjct: 460 SGAEPSSSGARSSGSEGNCKRESG--VQESVLSNGMRTVLSMGFSYLQVIEAYSIFGEDV 517

Query: 184 DSMVCYLLETGSSSRRKGKATE 205
           DSMVCYLLETG SSRRKGKATE
Sbjct: 518 DSMVCYLLETGDSSRRKGKATE 539

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2039642	506	OTLD1 "otubain-like deubiquiti	0.965	0.391	0.589	2.6e-55
DICTYBASE|DDB_G0285907	537	DDB_G0285907 "OTU domain conta	0.492	0.188	0.411	9e-13
UNIPROTKB|Q640H3	518	otud5-b "OTU domain-containing	0.531	0.210	0.327	9.5e-11
ZFIN|ZDB-GENE-030616-61	560	otud5a "OTU domain containing	0.546	0.2	0.318	1.4e-10
UNIPROTKB|I3L773	566	OTUD5 "Uncharacterized protein	0.541	0.196	0.321	1.4e-10
MGI|MGI:1859615	566	Otud5 "OTU domain containing 5	0.541	0.196	0.321	1.4e-10
RGD|1563027	566	Otud5 "OTU domain containing 5	0.541	0.196	0.321	1.4e-10
UNIPROTKB|E1BFW9	567	OTUD5 "Uncharacterized protein	0.541	0.195	0.321	1.4e-10
UNIPROTKB|Q96G74	571	OTUD5 "OTU domain-containing p	0.546	0.196	0.333	1.4e-10
UNIPROTKB|Q7ZX21	513	otud5-a "OTU domain-containing	0.531	0.212	0.327	2e-10

TAIR|locus:2039642 OTLD1 "otubain-like deubiquitinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 122/207 (58%), Positives = 139/207 (67%)

Query:     3 NAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNXXXXXXX 62
             + EPINIF G+Y+TD PPIRLSYHHGNHYNSLVDP R+TVGAGLGFS L G +       
Sbjct:   305 STEPINIFQGNYSTDTPPIRLSYHHGNHYNSLVDPHRLTVGAGLGFSSLSGRHVDKEQVK 364

Query:    63 XXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKXXX 122
                         NALLAEGRFYSDLELTEKEIE  VME SRAEYL  +  K ++G K   
Sbjct:   365 AAIKAQQEHQIDNALLAEGRFYSDLELTEKEIERSVMEASRAEYLM-EWSKPRIGPKESS 423

Query:   123 XXXXXXXXXXXRS-SCSETK-LEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFG 180
                           S S++K  E  K      TVLS+S++MVLSMGFSY Q +EAYSIFG
Sbjct:   424 TSNAETSSSGATGPSGSDSKPAEAVK----EKTVLSSSIEMVLSMGFSYAQAMEAYSIFG 479

Query:   181 DDVDSMVCYLLET--GSSSRRKGKATE 205
             DDVDSMVCY+LET  G ++RRKGKATE
Sbjct:   480 DDVDSMVCYVLETSCGGNNRRKGKATE 506

GO:0005634 "nucleus" evidence=ISM

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0003682 "chromatin binding" evidence=IDA

GO:0016578 "histone deubiquitination" evidence=IDA

GO:0031491 "nucleosome binding" evidence=IDA

GO:0042393 "histone binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

DICTYBASE|DDB_G0285907 DDB_G0285907 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 178 (67.7 bits), Expect = 9.0e-13, P = 9.0e-13
 Identities = 42/102 (41%), Positives = 51/102 (50%)

Query:     5 EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNXXXXXXXXX 64
             +PINIFHGSY   N PIRLSY HGNHY+S+ D    +VG GLGF+               
Sbjct:   312 DPINIFHGSYK-GNYPIRLSYLHGNHYDSIYDLNNPSVGVGLGFADFHPGAADKSQMETA 370

Query:    65 XXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVMEVSRAEY 106
                         +  E    +D + TE EIE  V+  SRAEY
Sbjct:   371 IKTSEFDLIDQQIYDESLLETDWKETELEIEEAVLAASRAEY 412

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q640H3 otud5-b "OTU domain-containing protein 5-B" [Xenopus laevis (taxid:8355)]

 Score = 159 (61.0 bits), Expect = 9.5e-11, P = 9.5e-11
 Identities = 36/110 (32%), Positives = 52/110 (47%)

Query:     5 EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNXXXXXXXXX 64
             EPIN FHG    ++ PIR+SYH   HYNS+V+P + T+G GLG    +  +         
Sbjct:   262 EPINTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGHAEQSLMKSA 321

Query:    65 XXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQ 114
                         +L + +  +D E T + IE  V   S  ++L  D  KQ
Sbjct:   322 IRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWLR-DQEKQ 370

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0032496 "response to lipopolysaccharide" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISS

ZFIN|ZDB-GENE-030616-61 otud5a "OTU domain containing 5a" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 36/113 (31%), Positives = 53/113 (46%)

Query:     2 TNAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNXXXXXX 61
             +  EPIN FHG +  ++ PIR+SYH   HYNS+V+P + T+G GLG    +         
Sbjct:   299 SGTEPINTFHGIHQNNDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPAFKPGFADQSLM 358

Query:    62 XXXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQ 114
                            +L + +  +D E T + IE  V   S  ++L  D  KQ
Sbjct:   359 KNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWLR-DQEKQ 410

GO:0005575 "cellular_component" evidence=ND

GO:0032496 "response to lipopolysaccharide" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|I3L773 OTUD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 158 (60.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 36/112 (32%), Positives = 53/112 (47%)

Query:     3 NAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNXXXXXXX 62
             + EPIN FHG +  ++ PIR+SYH   HYNS+V+P + T+G GLG    +          
Sbjct:   301 STEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMK 360

Query:    63 XXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQ 114
                           +L + +  +D E T + IE  V   S  ++L  D  KQ
Sbjct:   361 NAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWLR-DQEKQ 411

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

MGI|MGI:1859615 Otud5 "OTU domain containing 5" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 36/112 (32%), Positives = 53/112 (47%)

Query:     3 NAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNXXXXXXX 62
             + EPIN FHG +  ++ PIR+SYH   HYNS+V+P + T+G GLG    +          
Sbjct:   302 STEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMK 361

Query:    63 XXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQ 114
                           +L + +  +D E T + IE  V   S  ++L  D  KQ
Sbjct:   362 NAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWLR-DQEKQ 412

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=ISO

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO

RGD|1563027 Otud5 "OTU domain containing 5" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 36/112 (32%), Positives = 53/112 (47%)

Query:     3 NAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNXXXXXXX 62
             + EPIN FHG +  ++ PIR+SYH   HYNS+V+P + T+G GLG    +          
Sbjct:   302 STEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMK 361

Query:    63 XXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQ 114
                           +L + +  +D E T + IE  V   S  ++L  D  KQ
Sbjct:   362 NAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWLR-DQEKQ 412

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA;ISO;ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA;ISO;ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA;ISO;ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA;ISO;ISS

UNIPROTKB|E1BFW9 OTUD5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 158 (60.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 36/112 (32%), Positives = 53/112 (47%)

Query:     3 NAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNXXXXXXX 62
             + EPIN FHG +  ++ PIR+SYH   HYNS+V+P + T+G GLG    +          
Sbjct:   302 STEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMK 361

Query:    63 XXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQ 114
                           +L + +  +D E T + IE  V   S  ++L  D  KQ
Sbjct:   362 NAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWLR-DQEKQ 412

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

UNIPROTKB|Q96G74 OTUD5 "OTU domain-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 38/114 (33%), Positives = 55/114 (48%)

Query:     2 TNA-EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNXXXXX 60
             T+A EPIN FHG +  ++ PIR+SYH   HYNS+V+P + T+G GLG    +        
Sbjct:   305 TSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSL 364

Query:    61 XXXXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQ 114
                             +L + +  +D E T + IE  V   S  ++L  D  KQ
Sbjct:   365 MKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWLR-DQEKQ 417

GO:0006508 "proteolysis" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IDA

GO:0070536 "protein K63-linked deubiquitination" evidence=IDA

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0032496 "response to lipopolysaccharide" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

UNIPROTKB|Q7ZX21 otud5-a "OTU domain-containing protein 5-A" [Xenopus laevis (taxid:8355)]

 Score = 156 (60.0 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 36/110 (32%), Positives = 51/110 (46%)

Query:     5 EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNXXXXXXXXX 64
             EPIN FHG    ++ PIR+SYH   HYNS+V+P + T+G GLG    +            
Sbjct:   257 EPINTFHGIQKNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGYAEQSLMKSA 316

Query:    65 XXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQ 114
                         +L + +  +D E T + IE  V   S  ++L  D  KQ
Sbjct:   317 IRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWLR-DQEKQ 365

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0032496 "response to lipopolysaccharide" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	97.71
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	97.59
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	97.33
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	94.27
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	93.23
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	91.6
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	87.38
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	85.73

>cd00194 UBA Ubiquitin Associated domain

Probab=97.71  E-value=7.1e-05  Score=47.04  Aligned_cols=37  Identities=30%  Similarity=0.470  Sum_probs=34.7

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      ...|+.|++|||+..++++|....+-|++.-+.||++
T Consensus         2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~   38 (38)
T cd00194           2 EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE   38 (38)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            4679999999999999999999999999999999974

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=97.59  E-value=0.00015  Score=46.12  Aligned_cols=35  Identities=31%  Similarity=0.435  Sum_probs=31.9

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHH
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYL  190 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl  190 (205)
                      .+.|+.|++|||+..++.+|....|-|+|.-+.||
T Consensus         3 ~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    3 EEKVQQLMEMGFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            45789999999999999999999999999999997

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>smart00165 UBA Ubiquitin associated domain

Probab=97.33  E-value=0.00038  Score=43.60  Aligned_cols=36  Identities=28%  Similarity=0.471  Sum_probs=33.4

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHH
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL  191 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~  191 (205)
                      ...++.|++|||+..++++|...-+-|++.-+.||+
T Consensus         2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        2 EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            467899999999999999999999999999999985

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=94.27  E-value=0.11  Score=48.64  Aligned_cols=41  Identities=22%  Similarity=0.324  Sum_probs=38.5

Q ss_pred             CcccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHH
Q 028682          151 SDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL  191 (205)
Q Consensus       151 ~~~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~  191 (205)
                      .++.+.++|+.+|.||+.-++|+-|-+-==-|||.-|-|||
T Consensus       131 ~G~~~e~~V~~Im~MGy~re~V~~AlRAafNNPeRAVEYLl  171 (340)
T KOG0011|consen  131 VGSEYEQTVQQIMEMGYDREEVERALRAAFNNPERAVEYLL  171 (340)
T ss_pred             ccchhHHHHHHHHHhCccHHHHHHHHHHhhCChhhhHHHHh
Confidence            56789999999999999999999999988899999999998

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=93.23  E-value=0.35  Score=45.33  Aligned_cols=41  Identities=22%  Similarity=0.310  Sum_probs=38.1

Q ss_pred             CcccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHH
Q 028682          151 SDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL  191 (205)
Q Consensus       151 ~~~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~  191 (205)
                      .++.+...|+.+|+|||.=+||..|-+-==-|||--|-||+
T Consensus       152 ~g~~~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~  192 (378)
T TIGR00601       152 VGSERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLL  192 (378)
T ss_pred             cchHHHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHH
Confidence            46678999999999999999999999988899999999998

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=91.60  E-value=0.26  Score=46.10  Aligned_cols=39  Identities=23%  Similarity=0.390  Sum_probs=36.6

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETG  194 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~  194 (205)
                      -.+|+.|.+|||.-.+|||||---.-|-++-.+||||-.
T Consensus       338 ~~AIeRL~~LGF~r~~viqaY~ACdKNEelAAn~Lf~~~  376 (378)
T TIGR00601       338 KEAIERLCALGFDRGLVIQAYFACDKNEELAANYLLSQN  376 (378)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence            478999999999999999999999999999999999863

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=87.38  E-value=0.62  Score=33.58  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             HHHHHHHHhcchHHHHHHHHHhhc
Q 028682          157 NSMQMVLSMGFSYLQVIEAYSIFG  180 (205)
Q Consensus       157 ~~~q~~l~mGFs~~qvieAysifG  180 (205)
                      .-|+..++|||+.+.||||..-+|
T Consensus        11 ~lVd~F~~mGF~~dkVvevlrrlg   34 (55)
T PF09288_consen   11 DLVDQFENMGFERDKVVEVLRRLG   34 (55)
T ss_dssp             HHHHHHHHHT--HHHHHHHHHHS-
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHhC
Confidence            458899999999999999999887

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=85.73  E-value=1.1  Score=45.23  Aligned_cols=38  Identities=24%  Similarity=0.468  Sum_probs=35.5

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHh
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  193 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~  193 (205)
                      -+.|..|++|||+..+..-|.-|+|. |.++-|+||+|-
T Consensus       559 qs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqH  597 (749)
T COG5207         559 QSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQH  597 (749)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhh
Confidence            46899999999999999999999997 999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		6e-10
3tmo_A	184	The Catalytic Domain Of Human Deubiquitinase Duba L		9e-10
3pfy_A	185	The Catalytic Domain Of Human Otud5 Length = 185		3e-06

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 4   AEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLG 47
            EPIN FHG +  ++ PIR+SYH   HYNS+V+P + T+G GLG
Sbjct: 141 VEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLG 184

>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLG 47
           EPIN FHG +  ++ PIR+SYH   HYNS+V+P + T+G GLG
Sbjct: 142 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLG 184

>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 5   EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 39
           EPIN FHG +  ++ PIR+SYH   HYNS+V+P +
Sbjct: 150 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
3pfy_A	185	OTU domain-containing protein 5; structural genomi	1e-08
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-04
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	4e-04

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 1   MTNAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 39
             + EPIN FHG +  ++ PIR+SYH   HYNS+V+P +
Sbjct: 146 QYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 184

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 4/33 (12%), Positives = 10/33 (30%)

Query: 2   TNAEPINIFHGSYNTDNPPIRLSYHHGNHYNSL 34
            + E               + L +    H+++L
Sbjct: 125 ASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDAL 157

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 1/94 (1%)

Query: 2   TNAEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCL-RGTNVDKDQ 60
            + E               + L +    H+++L    +         S + R   VD+  
Sbjct: 125 ASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFETDTREALSLMDRVIAVDQLT 184

Query: 61  VKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEI 94
             ++ + Q  + +  AL +         L E  +
Sbjct: 185 SSSSDELQDYEDLALALTSAEESNRRSSLDEVTL 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	97.91
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	97.89
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	97.69
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	97.65
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	97.55
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	97.52
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	97.5
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	97.39
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	97.38
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	97.36
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	97.32
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	97.29
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	97.25
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	97.24
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	97.24
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	97.24
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	97.22
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	97.21
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	97.19
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	97.16
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	97.16
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	97.15
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	97.13
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	97.09
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	97.06
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	97.06
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	97.01
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	96.68
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	96.6
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	96.48
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	96.32
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	96.19
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	95.81
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	95.5
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	95.02
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	95.0
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	94.28
2dna_A	67	Unnamed protein product; ubiquitin associated doma	94.18
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	93.75
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	92.62
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	92.58
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	92.4
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	87.94
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	80.94

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=97.91  E-value=2.1e-06  Score=73.04  Aligned_cols=58  Identities=9%  Similarity=0.004  Sum_probs=33.7

Q ss_pred             CCCCeeeeecCCCccccccCCCCCcccccccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHH
Q 028682           17 DNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIEC   96 (205)
Q Consensus        17 ~n~PIRLSYH~g~HYNSIvdP~~~tVGvGLGlp~~~pg~aDk~~~~~Ai~~Se~~~IeqamLedk~~~TD~e~Te~eIee   96 (205)
                      ...||+|+||+|.|||||....           +..++.+           +....+|+.|+.|++..||||.|-+|=+-
T Consensus       140 ~~~~I~L~Y~g~~HYdSL~~~~-----------d~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  197 (219)
T 3phu_A          140 VFTAVNLLHSGQTHFDALRILP-----------QFETDTR-----------EALSLMDRVIAVDQLTSSSSDELQDYEDL  197 (219)
T ss_dssp             TTTSEEEEEETTTEEEEEEECT-----------TTCCSCC-----------CCCCHHHHHHHHHHHHC------------
T ss_pred             CCCeEEEEECCCcCchhheECC-----------CCCCCCC-----------cchhHHHHHHHHHHHHhccHHhhhhHHHH
Confidence            3689999999999999997632           2333322           22345688999999999999999665443

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=97.89  E-value=4e-05  Score=55.77  Aligned_cols=42  Identities=26%  Similarity=0.311  Sum_probs=38.5

Q ss_pred             cccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          152 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       152 ~~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      .......|+.|++|||+-++|+.|++..+-|+|.-+.||++-
T Consensus        26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~   67 (73)
T 1vg5_A           26 VAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ   67 (73)
T ss_dssp             SCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             CcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            345778999999999999999999999999999999999974

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=97.69  E-value=4e-05  Score=49.23  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=34.7

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      ...|+.|++|||+-.+++.|+...+-|++.-+.||++
T Consensus         5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~   41 (43)
T 2g3q_A            5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence            3679999999999999999999999999999999986

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=97.65  E-value=6.9e-05  Score=52.26  Aligned_cols=40  Identities=18%  Similarity=0.293  Sum_probs=37.1

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      ..+..|+.||+|||+-.+||+|-.+.+.|+|.--+.|+|-
T Consensus        10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef   49 (52)
T 2ooa_A           10 NVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF   49 (52)
T ss_dssp             -CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence            4568999999999999999999999999999999999985

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.55  E-value=9.9e-05  Score=49.24  Aligned_cols=41  Identities=22%  Similarity=0.329  Sum_probs=38.0

Q ss_pred             cccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682          152 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       152 ~~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      +......|+.|++|||+-.+|+.|.+..+-|+|.-+.||++
T Consensus         5 ~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~   45 (49)
T 1ify_A            5 GSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT   45 (49)
T ss_dssp             SHHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred             CccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            44567889999999999999999999999999999999997

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.52  E-value=0.00011  Score=48.14  Aligned_cols=38  Identities=26%  Similarity=0.400  Sum_probs=35.1

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      .....|+.|++|||+-.+++.|+..-| |++.-+.||++
T Consensus         8 ~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~   45 (47)
T 2ekk_A            8 VNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLT   45 (47)
T ss_dssp             SCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence            456789999999999999999999998 89999999986

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.50  E-value=0.0002  Score=50.04  Aligned_cols=42  Identities=24%  Similarity=0.375  Sum_probs=38.7

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhCc
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGS  195 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~~  195 (205)
                      ..+..|+.||+|||+-++||+|..+.+.|+|+--+.|+|-.+
T Consensus         8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~~   49 (53)
T 2d9s_A            8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFSG   49 (53)
T ss_dssp             CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            456779999999999999999999999999999999999854

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.39  E-value=0.00018  Score=50.57  Aligned_cols=40  Identities=20%  Similarity=0.294  Sum_probs=36.8

Q ss_pred             chHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682          155 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETG  194 (205)
Q Consensus       155 l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~  194 (205)
                      -...|+.|++|||+-.+|+.|+...+-|++.-+.||++-.
T Consensus         9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~   48 (63)
T 1wji_A            9 DEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSN   48 (63)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence            3568999999999999999999999999999999999863

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.38  E-value=0.00063  Score=49.66  Aligned_cols=41  Identities=15%  Similarity=0.244  Sum_probs=36.9

Q ss_pred             ccchHHHHHHHHhcc-hHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          153 TVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       153 ~~l~~~~q~~l~mGF-s~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      ..+...|+.|++||| .-.+++.|....+-|++.-|.||+.-
T Consensus        27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~   68 (74)
T 1vej_A           27 GRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGA   68 (74)
T ss_dssp             TTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            457889999999999 57888999999999999999999964

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.36  E-value=0.00028  Score=48.94  Aligned_cols=40  Identities=20%  Similarity=0.355  Sum_probs=36.9

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      .....|+.|++|||+-.+++.|....+-|++.-+.||++-
T Consensus         8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~   47 (63)
T 2dak_A            8 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH   47 (63)
T ss_dssp             CCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            3567899999999999999999999999999999999985

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=97.32  E-value=0.00024  Score=44.12  Aligned_cols=37  Identities=30%  Similarity=0.524  Sum_probs=34.1

Q ss_pred             chHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHH
Q 028682          155 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL  191 (205)
Q Consensus       155 l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~  191 (205)
                      ....|+.|++|||+-.+++.|+...+-|++.-+.||+
T Consensus         4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            4 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence            4568999999999999999999999999999999985

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=97.29  E-value=0.0005  Score=46.93  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=39.9

Q ss_pred             ccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhCc
Q 028682          153 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGS  195 (205)
Q Consensus       153 ~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~~  195 (205)
                      ..|...|+.||+|||+...|+.|..|=.-|+++--+-|+|-.+
T Consensus         2 ~~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~~   44 (46)
T 2oo9_A            2 SQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFAA   44 (46)
T ss_dssp             CHHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhcc
Confidence            4688999999999999999999999999999999999998764

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.25  E-value=0.0012  Score=49.21  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=37.4

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      +....|+.|++|||+-.+|+.|++..+.|++.-+.||+.-
T Consensus        28 ~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh   67 (83)
T 1veg_A           28 PSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHH   67 (83)
T ss_dssp             CCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            3567899999999999999999999999999999999985

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=97.24  E-value=0.0004  Score=46.92  Aligned_cols=43  Identities=21%  Similarity=0.352  Sum_probs=39.0

Q ss_pred             cccchHHHHHHHHhcc-hHHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682          152 DTVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLETG  194 (205)
Q Consensus       152 ~~~l~~~~q~~l~mGF-s~~qvieAysifGD~~d~~~~yl~E~~  194 (205)
                      ...+...|+.|++||| .-.+++.|...-+-|++.-+.||++-+
T Consensus         8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~   51 (53)
T 2knz_A            8 EVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            3457788999999999 999999999999999999999999854

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.24  E-value=0.00037  Score=49.09  Aligned_cols=40  Identities=18%  Similarity=0.364  Sum_probs=36.1

Q ss_pred             chHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHhC
Q 028682          155 LSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLETG  194 (205)
Q Consensus       155 l~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~~  194 (205)
                      ....|+.|++|||+-.+++.|...-|. |++.-++||+|-.
T Consensus         9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~   49 (64)
T 2crn_A            9 SPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHC   49 (64)
T ss_dssp             SCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence            345789999999999999999999987 9999999999863

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=97.24  E-value=0.00052  Score=46.29  Aligned_cols=41  Identities=20%  Similarity=0.364  Sum_probs=37.3

Q ss_pred             cccchHHHHHHHHhcc-hHHHHHHHHHhhcCChhHHHHHHHH
Q 028682          152 DTVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       152 ~~~l~~~~q~~l~mGF-s~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      ...+...|+.|++||| .-.+++.|...-|-|++.-+.||+.
T Consensus         9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~   50 (52)
T 2jy5_A            9 EVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG   50 (52)
T ss_dssp             TTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            3457889999999999 9999999999999999999999974

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.22  E-value=0.0012  Score=48.66  Aligned_cols=40  Identities=20%  Similarity=0.273  Sum_probs=37.0

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      .-...|+.|++|||+-.+++.|+..-+-|++.-++||++-
T Consensus        28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~   67 (83)
T 2dai_A           28 VDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEH   67 (83)
T ss_dssp             CCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            3567899999999999999999999999999999999986

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=97.21  E-value=0.00038  Score=54.20  Aligned_cols=37  Identities=27%  Similarity=0.589  Sum_probs=34.9

Q ss_pred             HHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          157 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       157 ~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      ..+++|++|||+..+|.-|....|.|++.+|+||++-
T Consensus        10 ~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h   46 (118)
T 4ae4_A           10 QCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAH   46 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence            4689999999999999999999999999999999985

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=97.19  E-value=0.0006  Score=48.20  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=40.9

Q ss_pred             cccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhCcc
Q 028682          152 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSS  196 (205)
Q Consensus       152 ~~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~~~  196 (205)
                      +......|+.||+|||+...|++|..|=..|+++--+.|+|-.+-
T Consensus         4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf~~~   48 (56)
T 2juj_A            4 SPQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFVSI   48 (56)
T ss_dssp             CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHSCCC
T ss_pred             CCCChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHHHcc
Confidence            445778999999999999999999999999999999999998653

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.16  E-value=0.00044  Score=49.86  Aligned_cols=39  Identities=26%  Similarity=0.566  Sum_probs=36.2

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETG  194 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~  194 (205)
                      .+.|.+|++|||++.|++-|-.--|-|++..+.|||.-.
T Consensus        20 ~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~   58 (63)
T 1wgn_A           20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            456999999999999999999999999999999999763

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.16  E-value=0.00054  Score=49.39  Aligned_cols=40  Identities=13%  Similarity=0.260  Sum_probs=36.5

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHh
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  193 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~  193 (205)
                      +-...|+.|++|||+-.+++.|+..-|. |++.-+.||++-
T Consensus         8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~   48 (74)
T 2dag_A            8 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSH   48 (74)
T ss_dssp             SCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence            3467899999999999999999999995 899999999986

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.15  E-value=0.00045  Score=48.48  Aligned_cols=38  Identities=24%  Similarity=0.444  Sum_probs=35.1

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHh
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  193 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~  193 (205)
                      ...|+.|++|||+-.+++.|+..-|- |++.-+.||++-
T Consensus        20 e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~   58 (64)
T 2cpw_A           20 GSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH   58 (64)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence            45799999999999999999999997 999999999974

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=97.13  E-value=0.0006  Score=49.02  Aligned_cols=40  Identities=20%  Similarity=0.342  Sum_probs=37.2

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      +-...|+.|++|||+-.+|+.|++.-|-|++.-+.||++-
T Consensus        28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~   67 (73)
T 1wiv_A           28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN   67 (73)
T ss_dssp             SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            4567899999999999999999999999999999999985

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=97.09  E-value=0.00012  Score=61.30  Aligned_cols=30  Identities=30%  Similarity=0.379  Sum_probs=24.8

Q ss_pred             CcccccccCCCCCCCCCeeeeecCCCccccccC
Q 028682            4 AEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVD   36 (205)
Q Consensus         4 ~EPINiFh~~~~~~n~PIRLSYH~g~HYNSIvd   36 (205)
                      ..|+.+|...+  .++||+|+|| |.|||||..
T Consensus       110 ~~~~~~~~~~~--~~~~I~L~Y~-g~HYdsl~~  139 (212)
T 3by4_A          110 AVKIEKFNEDK--FDNYILILFN-GIHYDSLTM  139 (212)
T ss_dssp             TTEEEEESTTT--CSEEEEEEEC-SSCEEEEEE
T ss_pred             CCCeEEeCCCC--CCCeEEEEEc-CCcceEEec
Confidence            35788887655  5789999998 899999987

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.06  E-value=0.0006  Score=47.74  Aligned_cols=38  Identities=18%  Similarity=0.440  Sum_probs=35.0

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhc-CChhHHHHHHHHh
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFG-DDVDSMVCYLLET  193 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifG-D~~d~~~~yl~E~  193 (205)
                      ...|+.|++|||+-.++..|+..-| -|++.-+.||++-
T Consensus        10 ~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~   48 (64)
T 1whc_A           10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEH   48 (64)
T ss_dssp             CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence            4579999999999999999999995 7999999999986

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=97.06  E-value=0.00011  Score=48.81  Aligned_cols=37  Identities=22%  Similarity=0.376  Sum_probs=34.8

Q ss_pred             HHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          157 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       157 ~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      ..|+.|++|||+-.+|++||.--|-|++.-++||++-
T Consensus         6 eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~   42 (47)
T 1dv0_A            6 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ   42 (47)
T ss_dssp             HHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            5789999999999999999999999999999999863

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=97.01  E-value=0.00085  Score=49.46  Aligned_cols=40  Identities=25%  Similarity=0.326  Sum_probs=36.0

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHh
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  193 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~  193 (205)
                      .-...|+.|++|||+-.+++.|....|+ |++.-++||++-
T Consensus        28 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h   68 (84)
T 1vek_A           28 ANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSH   68 (84)
T ss_dssp             CCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            3467899999999999999999888875 999999999985

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.68  E-value=0.002  Score=47.78  Aligned_cols=38  Identities=26%  Similarity=0.294  Sum_probs=36.3

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      ...|+.|++|||+-.+|++|+...+-|++.-+.||++.
T Consensus        22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h   59 (85)
T 2dkl_A           22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEK   59 (85)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence            67899999999999999999999999999999999986

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=96.60  E-value=0.00062  Score=56.00  Aligned_cols=21  Identities=14%  Similarity=0.093  Sum_probs=18.4

Q ss_pred             CCCCeeeeecCCCccccccCC
Q 028682           17 DNPPIRLSYHHGNHYNSLVDP   37 (205)
Q Consensus        17 ~n~PIRLSYH~g~HYNSIvdP   37 (205)
                      +.+||+|+||++.|||||...
T Consensus       140 ~~~~I~L~Y~g~~HYdsl~~~  160 (185)
T 3phx_A          140 VFTAVNLLHSGQTHFDALRIL  160 (185)
T ss_dssp             TTTSEEEEEETTTEEEEEEEC
T ss_pred             CCCEEEEEECCCcCchhceEC
Confidence            368999999999999999763

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.48  E-value=0.0044  Score=42.32  Aligned_cols=43  Identities=26%  Similarity=0.325  Sum_probs=37.5

Q ss_pred             cchHHHHHHHHhcchHHH-HHHHHHhhcCChhHHHHHHHHhCcc
Q 028682          154 VLSNSMQMVLSMGFSYLQ-VIEAYSIFGDDVDSMVCYLLETGSS  196 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~q-vieAysifGD~~d~~~~yl~E~~~~  196 (205)
                      .+.+.|+.|++|||+-++ ++.|....+-|++.-|.||+.-+..
T Consensus         8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~   51 (54)
T 2dah_A            8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP   51 (54)
T ss_dssp             SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred             hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence            467789999999996655 6999999999999999999987643

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=96.32  E-value=0.0039  Score=41.22  Aligned_cols=40  Identities=20%  Similarity=0.289  Sum_probs=35.2

Q ss_pred             ccchHHHHHHHHhcch-HHHHHHHHHhhcCChhHHHHHHHH
Q 028682          153 TVLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       153 ~~l~~~~q~~l~mGFs-~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      ..+.+.|+.|++|||+ -.+++.|...-+-|++.-+.||+.
T Consensus         5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~   45 (46)
T 2bwb_A            5 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   45 (46)
T ss_dssp             HHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            3467899999999996 566899999999999999999984

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=96.19  E-value=0.0054  Score=46.95  Aligned_cols=40  Identities=18%  Similarity=0.334  Sum_probs=36.8

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      .....|+.|++|||+-.+++.|+...|-|++.-+.||+..
T Consensus        77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~  116 (126)
T 2lbc_A           77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSH  116 (126)
T ss_dssp             CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            4567899999999999999999999999999999999974

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=95.81  E-value=0.014  Score=40.44  Aligned_cols=40  Identities=20%  Similarity=0.289  Sum_probs=36.0

Q ss_pred             ccchHHHHHHHHhcch-HHHHHHHHHhhcCChhHHHHHHHH
Q 028682          153 TVLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       153 ~~l~~~~q~~l~mGFs-~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      ..+.+.|+.|++|||+ -.+++.|...-+-|++.-|.||+.
T Consensus        15 ~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~   55 (58)
T 1wr1_B           15 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN   55 (58)
T ss_dssp             HHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            4578899999999995 668899999999999999999986

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=95.50  E-value=0.016  Score=52.32  Aligned_cols=42  Identities=21%  Similarity=0.333  Sum_probs=38.6

Q ss_pred             CcccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682          151 SDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       151 ~~~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      .+......|+.|++|||+-++|+.|-..-+-|+|.-+.||+.
T Consensus       164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~  205 (368)
T 1oqy_A          164 TGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT  205 (368)
T ss_dssp             CTTTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             CCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            456688899999999999999999999999999999999984

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=95.02  E-value=0.019  Score=43.88  Aligned_cols=38  Identities=16%  Similarity=0.280  Sum_probs=34.9

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHh
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  193 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~  193 (205)
                      ...++.|++|||+-.++-+|...-|. |++.-++||++-
T Consensus         4 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~   42 (126)
T 2lbc_A            4 ESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVH   42 (126)
T ss_dssp             THHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence            35689999999999999999999987 999999999995

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=94.28  E-value=0.057  Score=41.88  Aligned_cols=38  Identities=21%  Similarity=0.313  Sum_probs=35.6

Q ss_pred             chHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682          155 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       155 l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      ..+.|.+|++|||+-.++.+|-...+-|+|.-+-||+=
T Consensus        76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~  113 (118)
T 4ae4_A           76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA  113 (118)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999984

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.18  E-value=0.055  Score=38.89  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=36.7

Q ss_pred             ccchHHHHHHHHhcchHH-HHHHHHHhhcCChhHHHHHHHHhC
Q 028682          153 TVLSNSMQMVLSMGFSYL-QVIEAYSIFGDDVDSMVCYLLETG  194 (205)
Q Consensus       153 ~~l~~~~q~~l~mGFs~~-qvieAysifGD~~d~~~~yl~E~~  194 (205)
                      ..+...+++|.+|||.=+ .+++|-..-+-|++.-|.||+.-+
T Consensus        17 ~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~   59 (67)
T 2dna_A           17 VRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQ   59 (67)
T ss_dssp             HHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            457889999999999555 559999999999999999999874

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=93.75  E-value=0.028  Score=50.68  Aligned_cols=38  Identities=21%  Similarity=0.367  Sum_probs=35.9

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      ...|+.|++|||+-.+|++||...+-|.+.-++||++-
T Consensus       326 ~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~  363 (368)
T 1oqy_A          326 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ  363 (368)
T ss_dssp             HHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence            45899999999999999999999999999999999975

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=92.62  E-value=0.12  Score=42.21  Aligned_cols=39  Identities=28%  Similarity=0.295  Sum_probs=36.7

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      .+..-|+.|++|||+=.+|++|.+-.+=|++.-+.||++
T Consensus       162 ~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~  200 (201)
T 3k9o_A          162 EYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS  200 (201)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            457899999999999999999999999999999999986

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=92.58  E-value=0.16  Score=39.24  Aligned_cols=41  Identities=17%  Similarity=0.274  Sum_probs=36.8

Q ss_pred             cchHHHHHHHHhcch-HHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682          154 VLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLETG  194 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs-~~qvieAysifGD~~d~~~~yl~E~~  194 (205)
                      .+.+.|+.|.+|||+ -.+++.|...-+-|++.-|.||+.-|
T Consensus        65 ~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~  106 (108)
T 2cwb_A           65 QWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG  106 (108)
T ss_dssp             TTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred             chHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence            467899999999995 57999999999999999999999754

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=92.40  E-value=0.14  Score=39.68  Aligned_cols=41  Identities=17%  Similarity=0.239  Sum_probs=38.2

Q ss_pred             cchHHHHHHHHh-cchHHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682          154 VLSNSMQMVLSM-GFSYLQVIEAYSIFGDDVDSMVCYLLETG  194 (205)
Q Consensus       154 ~l~~~~q~~l~m-GFs~~qvieAysifGD~~d~~~~yl~E~~  194 (205)
                      .+..-|+.|+.| ||+-++|+.|..-.+-|++.-|.||+|-.
T Consensus        38 d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~   79 (104)
T 1wj7_A           38 DFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN   79 (104)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred             cHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            456789999999 99999999999999999999999999874

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=87.94  E-value=1.1  Score=30.95  Aligned_cols=42  Identities=17%  Similarity=0.192  Sum_probs=37.9

Q ss_pred             cchHHHHHHHHhcc-hHHHHHHHHHhhcCChhHHHHHHHHhCc
Q 028682          154 VLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLETGS  195 (205)
Q Consensus       154 ~l~~~~q~~l~mGF-s~~qvieAysifGD~~d~~~~yl~E~~~  195 (205)
                      .+.+-++.|.+||| .-.+-++|-.=.|.|++..|..|+..+.
T Consensus         8 ~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~   50 (54)
T 2cp8_A            8 QTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSG   50 (54)
T ss_dssp             THHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSS
T ss_pred             hhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence            36678999999999 8999999999999999999999998753

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=80.94  E-value=2  Score=36.89  Aligned_cols=39  Identities=26%  Similarity=0.252  Sum_probs=36.9

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      .+..-|+.|++|||.-.+|++|.+-.+=|.+.-+.||+.
T Consensus       214 ~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~  252 (253)
T 3e46_A          214 EYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS  252 (253)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            568899999999999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	0.001

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)

Query: 1   MTNAEPINIFHGSYNTDNPPIRLSYHHGNHYNSL 34
           +   +     H       P + L Y    HYN L
Sbjct: 190 VDEMDTALNHHVFPEAATPSVYLLYKTS-HYNIL 222

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	98.26
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	97.68
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	97.67
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	97.62
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	97.51
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	97.31
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	96.81
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	96.77
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	96.68
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	96.4
d1oqya2	44	DNA repair protein Hhr23a {Human (Homo sapiens) [T	95.92
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	93.38
d1vega_	83	NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculu	91.81
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	89.35
d1p9ya_	117	Trigger factor ribosome-binding domain {Escherichi	84.32
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	82.83
d1t11a2	129	Trigger factor ribosome-binding domain {Vibrio cho	81.74
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	80.18

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.26  E-value=1.5e-06  Score=61.26  Aligned_cols=40  Identities=28%  Similarity=0.345  Sum_probs=37.6

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      .-...|+.|++|||+.+++++|+...+.|++..++|||+.
T Consensus        28 ~~ee~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Ll~~   67 (73)
T d1vg5a_          28 ASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ   67 (73)
T ss_dssp             CCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            3467899999999999999999999999999999999987

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.1e-05  Score=54.03  Aligned_cols=38  Identities=26%  Similarity=0.578  Sum_probs=36.3

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      ...|+.|++|||+..++++|+..-|-|++.-+.|||+-
T Consensus        20 e~~v~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Lls~   57 (63)
T d1wgna_          20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAH   57 (63)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            56899999999999999999999999999999999985

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.67  E-value=5.2e-05  Score=53.14  Aligned_cols=40  Identities=20%  Similarity=0.342  Sum_probs=37.2

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      +-...|++|++|||+-.+|++|+..-|-|++.-+.||++-
T Consensus        28 ~d~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~Av~~Lls~   67 (73)
T d1wiva_          28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN   67 (73)
T ss_dssp             SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             CCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            3467899999999999999999999999999999999985

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=9.7e-06  Score=51.76  Aligned_cols=39  Identities=23%  Similarity=0.346  Sum_probs=36.3

Q ss_pred             ccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHH
Q 028682          153 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL  191 (205)
Q Consensus       153 ~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~  191 (205)
                      ..+.+.|+.|++|||+-.+|++|-+.-+-|||.-+.||+
T Consensus         2 ~~~e~~i~~L~~MGF~~~~a~~AL~~~~~N~e~A~~~Ll   40 (41)
T d1oqya1           2 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLL   40 (41)
T ss_dssp             TTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTT
T ss_pred             hhHHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            456788999999999999999999999999999999986

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=5e-05  Score=51.65  Aligned_cols=40  Identities=23%  Similarity=0.319  Sum_probs=37.3

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      +-...|+.|++|||+-.+++.|...-+.|++.-+.||++-
T Consensus         8 ~d~~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~~wL~~~   47 (63)
T d1wjia_           8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTS   47 (63)
T ss_dssp             SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            3467899999999999999999999999999999999996

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=9.8e-05  Score=48.93  Aligned_cols=37  Identities=24%  Similarity=0.459  Sum_probs=34.0

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHH
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLE  192 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E  192 (205)
                      ...|++|++|||+-.++..|...-|. +++.-+.||+|
T Consensus        13 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~ve~A~~WLl~   50 (51)
T d2cpwa1          13 GSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS   50 (51)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence            45699999999999999999999886 99999999996

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.81  E-value=0.00076  Score=48.19  Aligned_cols=40  Identities=25%  Similarity=0.297  Sum_probs=36.3

Q ss_pred             chHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHhC
Q 028682          155 LSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLETG  194 (205)
Q Consensus       155 l~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~~  194 (205)
                      =...|++|++|||+-.++..|....|. +++.-++||+|-.
T Consensus        29 d~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~   69 (84)
T d1veka_          29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHM   69 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence            357899999999999999999999886 9999999999963

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00065  Score=44.57  Aligned_cols=37  Identities=19%  Similarity=0.426  Sum_probs=33.9

Q ss_pred             HHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHh
Q 028682          157 NSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  193 (205)
Q Consensus       157 ~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~  193 (205)
                      ..|++|++|||+-.++-.|...-|. +++.-+.||+|-
T Consensus         4 ~~v~~L~~MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h   41 (51)
T d2crna1           4 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH   41 (51)
T ss_dssp             SSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHHc
Confidence            4589999999999999999988876 999999999986

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00086  Score=45.63  Aligned_cols=38  Identities=18%  Similarity=0.452  Sum_probs=35.0

Q ss_pred             hHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHh
Q 028682          156 SNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET  193 (205)
Q Consensus       156 ~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~  193 (205)
                      ...|++|++|||+-.++..|...-|. +++.-+.||++-
T Consensus        10 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h   48 (64)
T d1whca_          10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEH   48 (64)
T ss_dssp             CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHHC
Confidence            46899999999999999999999887 899999999985

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=96.40  E-value=0.0018  Score=42.09  Aligned_cols=39  Identities=21%  Similarity=0.292  Sum_probs=36.2

Q ss_pred             chHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          155 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       155 l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      .+-+|+.|+.|||+=+++.+|..-..=|.+.-+|||++.
T Consensus         4 k~~ai~eL~~MGF~e~~A~~AL~k~~wnleaAtN~LLd~   42 (43)
T d2g3qa1           4 KSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            356899999999999999999999999999999999974

>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0016  Score=42.40  Aligned_cols=38  Identities=21%  Similarity=0.370  Sum_probs=35.5

Q ss_pred             HHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682          157 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETG  194 (205)
Q Consensus       157 ~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~  194 (205)
                      .+|..|.+|||+-.+|||||---.-|-++-.+||+|.|
T Consensus         6 ~aIeRL~~LGF~r~~viqay~ACdKNEelAaN~L~~~~   43 (44)
T d1oqya2           6 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQN   43 (44)
T ss_dssp             HHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHHcc
Confidence            57899999999999999999999999999999999864

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.38  E-value=0.048  Score=33.89  Aligned_cols=37  Identities=30%  Similarity=0.524  Sum_probs=31.7

Q ss_pred             chHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHH
Q 028682          155 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL  191 (205)
Q Consensus       155 l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~  191 (205)
                      |++-|..|++|||.-..+-+|..----|.|--.+||+
T Consensus         2 lnskiaqlvsmgfdpleaaqaldaangdldvaasfll   38 (38)
T d1z96a1           2 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL   38 (38)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             cchHHHHHHHcCCCHHHHHHHHhhhcCcHHHHHHhhC
Confidence            5788999999999988898998888888888777764

>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: NEDD8 ultimate buster-1 (Nub1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.81  E-value=0.14  Score=36.67  Aligned_cols=43  Identities=26%  Similarity=0.374  Sum_probs=37.6

Q ss_pred             cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhCcc
Q 028682          154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSS  196 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~~~  196 (205)
                      .-..+|..||-|||+-+-+=.|.+.||+||..----|...|+.
T Consensus        28 ~sQesidqLvYMGF~~~~Ae~ALRvfrGnVQlAaQtLahngG~   70 (83)
T d1vega_          28 PSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS   70 (83)
T ss_dssp             CCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred             CCHHHHHHHHHhcccHHHHHHHHHHhcccHHHHHHHHHHcCCc
Confidence            3457899999999999999999999999999988888877653

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.35  E-value=0.42  Score=32.22  Aligned_cols=39  Identities=15%  Similarity=0.262  Sum_probs=34.3

Q ss_pred             cchHHHHHHHHhcch-HHHHHHHHHhhcCChhHHHHHHHH
Q 028682          154 VLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       154 ~l~~~~q~~l~mGFs-~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      .+.+-++.|.+|||. -+.-|+|-..-|-|++.-|.+|+.
T Consensus        21 ry~~QL~qL~eMGF~d~~~Nl~AL~~t~Gdv~~Aie~Ll~   60 (61)
T d1veja1          21 RYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG   60 (61)
T ss_dssp             TSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            478899999999996 555599999999999999999983

>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Escherichia coli [TaxId: 562]

Probab=84.32  E-value=0.95  Score=32.18  Aligned_cols=46  Identities=13%  Similarity=0.135  Sum_probs=29.9

Q ss_pred             cccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHHHHHHhcch
Q 028682           45 GLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDN  111 (205)
Q Consensus        45 GLGlp~~~pg~aDk~~~~~Ai~~Se~~~IeqamLedk~~~TD~e~Te~eIeeqV~r~S~~eyl~~~~  111 (205)
                      -.-+||||||.|-++.+++-...                    +.- +|..+.++.+++.++++++.
T Consensus        38 ~~~ipGFRkGKvP~~vi~k~yg~--------------------~i~-~e~~~~li~~~~~~al~e~~   83 (117)
T d1p9ya_          38 KVRIDGLRKGKVPMNIVAQRYGA--------------------SVR-QDVLGDLMSRNFIDAIIKEK   83 (117)
T ss_dssp             TCCCTTSCTTCSCHHHHHHHHHH--------------------HHH-HHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCCcCCCCccHHHHHHHHhH--------------------HHH-HHHHHHHHHHHHHHHHHhcc
Confidence            35689999999999876655443                    111 22334445677888887754

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.83  E-value=1.2  Score=27.56  Aligned_cols=38  Identities=29%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             chHHHHHHHHhcc-hHHHHHHHHHhhcCChhHHHHHHHH
Q 028682          155 LSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLE  192 (205)
Q Consensus       155 l~~~~q~~l~mGF-s~~qvieAysifGD~~d~~~~yl~E  192 (205)
                      +.+-++.|-+||| .-+.-++|-..-|-|++.-|.+|++
T Consensus         2 y~~QL~~L~~MGF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~   40 (41)
T d2daha1           2 FQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ   40 (41)
T ss_dssp             SHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            4567899999999 6777889999999999999999986

>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Vibrio cholerae [TaxId: 666]

Probab=81.74  E-value=1.3  Score=31.83  Aligned_cols=45  Identities=16%  Similarity=0.142  Sum_probs=28.7

Q ss_pred             ccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHHHHHHhcch
Q 028682           46 LGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDN  111 (205)
Q Consensus        46 LGlp~~~pg~aDk~~~~~Ai~~Se~~~IeqamLedk~~~TD~e~Te~eIeeqV~r~S~~eyl~~~~  111 (205)
                      +-+||||||.|-+..+++=...                    + -.+|.-+.++.+++.+++++.+
T Consensus        39 ~~ipGFRkGKvP~~ii~k~~~~--------------------~-i~~e~~~~~i~~~~~~~l~e~~   83 (129)
T d1t11a2          39 RRFDGFRKGKVPMKMVAKMYGK--------------------A-VRQDVLGEVMQRHFIEAIVKEK   83 (129)
T ss_dssp             CCCTTSCSSCCCHHHHHHHHHH--------------------H-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCcHHHHHHHhhh--------------------h-HHHHHHHHHHHHHHHHHHHhcc
Confidence            4689999999998876433321                    1 1222334456778888887754

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.18  E-value=1.7  Score=28.13  Aligned_cols=40  Identities=23%  Similarity=0.372  Sum_probs=36.0

Q ss_pred             cchHHHHHHHHhcc-hHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682          154 VLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLET  193 (205)
Q Consensus       154 ~l~~~~q~~l~mGF-s~~qvieAysifGD~~d~~~~yl~E~  193 (205)
                      .+.+-++.|-+||| .-+.-|+|-..-|-|++.-|.+|++.
T Consensus         7 ry~~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~   47 (50)
T d2dnaa1           7 RFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS   47 (50)
T ss_dssp             HTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            37788999999999 67777899999999999999999975