Citrus Sinensis ID: 028697

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQV
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccEEEccccccccHHHHHHHHcccccccEEEcccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEcccccccccHHHHHHHHHccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHccccccccccccccccccccHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccHcccccHHHHHHHHHccccHEEEEcccccccccHHHHHHHHHHcccccEEEcccccHccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccHHccccccccc
Coil and Loop (DISEMBL)
mvgeatnlssedLNLCFEKMMMAgagadraggvkmdgvvitewkDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTlvlrqdkpqledNAVEAIANschdlqdldlsksfklsdrSLYALAhgcpnltrlnisgctsfsDHALAYLCGFCRKLKILNLCGCVKAATDYALQV
Flexible Loop (DISEMBL)
mvgeatnlsseDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQV
Low Complexity Region (SEG)
MVGEATNLSSEDLNLCFEKmmmagagadraggVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQV
Disordered region (IsUnstruct)
************LNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYA***
Disordered Region (DISOPRED)
******************************************WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQV
Disordered Region (DISEMBL)
********SSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQV
Disordered Region (DISPRO)
***********DLNLCFEKMMMA********GVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDY*L**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q9LPL4	360	F-box protein SKP2A OS=Ar	yes	no	0.912	0.519	0.705	2e-76
O49286	360	F-box protein SKP2B OS=Ar	no	no	0.921	0.525	0.696	3e-75
A6H779	423	F-box/LRR-repeat protein	yes	no	0.565	0.274	0.376	1e-11
P34284	466	Uncharacterized F-box/LRR	yes	no	0.721	0.317	0.273	2e-10
Q5R3Z8	423	F-box/LRR-repeat protein	yes	no	0.565	0.274	0.341	3e-10
Q9UKC9	423	F-box/LRR-repeat protein	yes	no	0.565	0.274	0.341	3e-10
Q8BH16	423	F-box/LRR-repeat protein	yes	no	0.565	0.274	0.333	8e-10
Q9CZV8	436	F-box/LRR-repeat protein	no	no	0.565	0.266	0.316	1e-07
Q96IG2	436	F-box/LRR-repeat protein	no	no	0.565	0.266	0.316	1e-07
Q58DG6	436	F-box/LRR-repeat protein	no	no	0.565	0.266	0.316	1e-07

>sp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1

 Score =  285 bits (728), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 144/204 (70%), Positives = 164/204 (80%), Gaps = 17/204 (8%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           M GEA    S +L+ CF+KM             KM+G+ I EWKDIP+ELL+RILSLVD+
Sbjct: 3   MGGEA----SMELDQCFQKM-------------KMEGISIKEWKDIPVELLMRILSLVDD 45

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
             VIVASGVC+GWRDAI  GLT L LSWC NNMN+LVLSL PK  KLQTL LRQDKPQLE
Sbjct: 46  RNVIVASGVCTGWRDAISFGLTRLRLSWCNNNMNSLVLSLVPKFVKLQTLNLRQDKPQLE 105

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DNAVEAIAN CH+LQ+LDLSKS K++DRSLYALAHGCP+LT+LN+SGCTSFSD A+AYL 
Sbjct: 106 DNAVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLT 165

Query: 181 GFCRKLKILNLCGCVKAATDYALQ 204
            FCRKLK+LNLCGCVKA TD AL+
Sbjct: 166 RFCRKLKVLNLCGCVKAVTDNALE 189

Component of SCF(SKP2A) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins (including cell cycle repressors). Acts as an auxin receptor. Regulates the stability of the transcription factors E2FC and DPB, repressors of cell proliferation. Confers increase tolerance to osmotic stress by promoting cell division, especially in meristems. Promotes the formation of lateral root primordia.
Arabidopsis thaliana (taxid: 3702)

>sp|O49286|SKP2B_ARATH F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1

 Score =  281 bits (718), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 142/204 (69%), Positives = 166/204 (81%), Gaps = 15/204 (7%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MV E    + ++LNLCFE M             KM+GV+I+EWKDIP+ELL++IL+LVD+
Sbjct: 1   MVSEGA--TRKELNLCFENM-------------KMEGVLISEWKDIPVELLMKILNLVDD 45

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI+AS +CSGWRDA+ LGLT LSLSWCK NMN+LVLSLAPK  KLQTLVLRQDKPQLE
Sbjct: 46  RTVIIASCICSGWRDAVSLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLE 105

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DNAVEAIAN CH+LQDLDLSKS K++D SLY+LA GC NLT+LN+SGCTSFSD ALA+L 
Sbjct: 106 DNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLT 165

Query: 181 GFCRKLKILNLCGCVKAATDYALQ 204
            FCRKLKILNLCGCV+A +D  LQ
Sbjct: 166 RFCRKLKILNLCGCVEAVSDNTLQ 189

Component of SCF(SKP2B) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of the cyclin-dependent kinase inhibitor KRP1. Does not interact with auxin.

Arabidopsis thaliana (taxid: 3702)

>sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           C  L +L+LSWC     + V +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct: 155 CRHLEYLNLSWCDQITKDGVEALVRGCRGLRALLLR-GCTQLEDEALKHIQNYCHELVSL 213

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
           +L    +++D  +  L  GCP L  L +SGC S +D +L  L   C +L+IL    C
Sbjct: 214 NLQSCSRVTDDGVVQLCRGCPRLQALCLSGCGSLTDASLTALALNCPRLQILEAARC 270

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Bos taurus (taxid: 9913)

>sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 31/179 (17%)

Query: 46  IPMELLLRILSLVDEPTVIVASGVCSGW-------------------RDAI--------- 77
           +P E+LL++ S +D   +  ++ VC  W                   RD           
Sbjct: 60  LPKEVLLKVFSFLDTKALCRSAQVCRSWSILALDGSNWQRVDLFTFQRDVKTAVVENLAR 119

Query: 78  -CLG-LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQ 135
            C G L  LSL  C+N  ++ + +   +   L+ L L + K ++ D + E +   CH L 
Sbjct: 120 RCGGFLKELSLKGCENVHDSALRTFTSRCPNLEHLSLYRCK-RVTDASCENLGRYCHKLN 178

Query: 136 DLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
            L+L     ++DR++  +  GCPNL+ LNIS C +  D  +  +   C+ L  L L GC
Sbjct: 179 YLNLENCSSITDRAMKYIGDGCPNLSYLNISWCDAIQDRGVQIILSNCKSLDTLILRGC 237

Caenorhabditis elegans (taxid: 6239)

>sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           C  L +L+LSWC     + + +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct: 155 CRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLR-GCTQLEDEALKHIQNYCHELVSL 213

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
           +L    +++D  +  +  GC  L  L +SGC++ +D +L  L   C +L+IL    C
Sbjct: 214 NLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARC 270

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Pongo abelii (taxid: 9601)

>sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           C  L +L+LSWC     + + +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct: 155 CRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLR-GCTQLEDEALKHIQNYCHELVSL 213

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
           +L    +++D  +  +  GC  L  L +SGC++ +D +L  L   C +L+IL    C
Sbjct: 214 NLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARC 270

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Binds to hepatitis C virus non-structural protein 5A (NS5A) in a reaction crucial for hepatitis C virus RNA replication.

Homo sapiens (taxid: 9606)

>sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           C  L +L+LSWC       + +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct: 155 CRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLR-GCTQLEDEALKHIQNHCHELVSL 213

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
           +L    +++D  +  +  GC  L  L +SGC++ +D +L  L   C +L++L    C
Sbjct: 214 NLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARC 270

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Mus musculus (taxid: 10090)

>sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           C  L  L++SWC     + + +L      L+ L L+    QLED A++ I   C +L  L
Sbjct: 168 CPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLK-GCTQLEDEALKYIGAHCPELVTL 226

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
           +L    +++D  L  +  GC  L  L  SGC++ +D  L  L   C +L+IL +  C
Sbjct: 227 NLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARC 283

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity.

Mus musculus (taxid: 10090)

>sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           C  L  L++SWC     + + +L      L+ L L+    QLED A++ I   C +L  L
Sbjct: 168 CPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLK-GCTQLEDEALKYIGAHCPELVTL 226

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
           +L    +++D  L  +  GC  L  L  SGC++ +D  L  L   C +L+IL +  C
Sbjct: 227 NLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARC 283

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Homo sapiens (taxid: 9606)

>sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           C  L  L++SWC     + + +L      L+ L L+    QLED A++ I   C +L  L
Sbjct: 168 CPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLK-GCTQLEDEALKYIGAHCPELVTL 226

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
           +L    +++D  L  +  GC  L  L  SGC++ +D  L  L   C +L+IL +  C
Sbjct: 227 NLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARC 283

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
255558466	373	F-box/LRR-repeat protein, putative [Rici	0.990	0.544	0.828	2e-90
224082382	363	predicted protein [Populus trichocarpa]	0.941	0.531	0.779	9e-83
449453019	376	PREDICTED: F-box protein SKP2A-like [Cuc	0.990	0.539	0.763	8e-81
363807426	371	uncharacterized protein LOC100793275 [Gl	0.990	0.547	0.730	2e-79
356546950	375	PREDICTED: F-box protein SKP2B-like isof	0.990	0.541	0.710	2e-78
302142727	428	unnamed protein product [Vitis vinifera]	0.970	0.464	0.746	7e-78
359492292	370	PREDICTED: F-box protein SKP2B-like [Vit	0.970	0.537	0.746	8e-78
356515961	372	PREDICTED: F-box protein SKP2A-like [Gly	0.990	0.545	0.715	8e-78
224066761	358	predicted protein [Populus trichocarpa]	0.834	0.477	0.837	1e-76
217073061	368	unknown [Medicago truncatula]	0.975	0.543	0.715	2e-76

>gi|255558466|ref|XP_002520258.1| F-box/LRR-repeat protein, putative [Ricinus communis] gi|223540477|gb|EEF42044.1| F-box/LRR-repeat protein, putative [Ricinus communis]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 169/204 (82%), Positives = 181/204 (88%), Gaps = 1/204 (0%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MVG    L SEDLN CFEK+MMAGA  +  G VKM+GVVITEWKDIPMELLLRI+SLVD+
Sbjct: 1   MVG-GGKLRSEDLNRCFEKLMMAGAAGNTEGRVKMEGVVITEWKDIPMELLLRIVSLVDD 59

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            T+I+ASGVCSGWRDAICLGLTHL LSWCKN+MNNLVL LAPK TKL+TLVLRQDKPQLE
Sbjct: 60  RTIIMASGVCSGWRDAICLGLTHLCLSWCKNHMNNLVLWLAPKFTKLETLVLRQDKPQLE 119

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DNAVEAIA  CHDL+DLDLSKSFKL+D SLYALAHGCPNLT+LNISGCTSFSD  L YL 
Sbjct: 120 DNAVEAIARYCHDLEDLDLSKSFKLTDCSLYALAHGCPNLTKLNISGCTSFSDGGLEYLT 179

Query: 181 GFCRKLKILNLCGCVKAATDYALQ 204
           GFCRKLKILNLCGCVKAATD ALQ
Sbjct: 180 GFCRKLKILNLCGCVKAATDRALQ 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082382|ref|XP_002306672.1| predicted protein [Populus trichocarpa] gi|222856121|gb|EEE93668.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (797), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 159/204 (77%), Positives = 170/204 (83%), Gaps = 11/204 (5%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           M GE     SEDLNLCFEK+MM   G          G VITEWKDIP+ELLLRI+SLVD+
Sbjct: 1   MAGEG-KARSEDLNLCFEKLMMLAFG----------GAVITEWKDIPVELLLRIVSLVDD 49

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI+ASGVCSGWRDAIC+GLTHL LSWCKNNMNNLVLSLAPK TKLQTLVLRQDKPQLE
Sbjct: 50  RTVIMASGVCSGWRDAICMGLTHLCLSWCKNNMNNLVLSLAPKFTKLQTLVLRQDKPQLE 109

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           D+AVE IA+ CHDLQDLDLSKSFKLSD SLYALAHGCPNLT+LNISGCT+FSD  L YL 
Sbjct: 110 DHAVETIASYCHDLQDLDLSKSFKLSDLSLYALAHGCPNLTKLNISGCTAFSDDGLEYLT 169

Query: 181 GFCRKLKILNLCGCVKAATDYALQ 204
            FC+KLK LNLCGCVK ATD ALQ
Sbjct: 170 EFCQKLKFLNLCGCVKGATDRALQ 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453019|ref|XP_004144256.1| PREDICTED: F-box protein SKP2A-like [Cucumis sativus] gi|449517068|ref|XP_004165568.1| PREDICTED: F-box protein SKP2A-like [Cucumis sativus]

 Score =  305 bits (781), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 158/207 (76%), Positives = 174/207 (84%), Gaps = 4/207 (1%)

Query: 1   MVGEATNLSSEDLNLCFEKMMM--AGAGAD-RAGGVKMDGVVITEWKDIPMELLLRILSL 57
           MVG+  NL +EDLNLCFEK MM  AG G D  A GV+MDG V+  WKDIPMELLL+ILSL
Sbjct: 1   MVGK-ENLRTEDLNLCFEKPMMLVAGDGMDVGAKGVQMDGGVLAGWKDIPMELLLQILSL 59

Query: 58  VDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKP 117
           VD+ TVIVASGVC GWRDAIC GL HLSLSWC+ NMNNLVLSLAPK  +LQ L+LRQDKP
Sbjct: 60  VDDRTVIVASGVCRGWRDAICFGLAHLSLSWCQKNMNNLVLSLAPKFARLQNLILRQDKP 119

Query: 118 QLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALA 177
           QL D+AVE IA+ CHDLQ LDLSKSFKLSD SLYALAHGC +L RLNISGCT+FSD ALA
Sbjct: 120 QLGDDAVETIASYCHDLQVLDLSKSFKLSDLSLYALAHGCRDLKRLNISGCTAFSDTALA 179

Query: 178 YLCGFCRKLKILNLCGCVKAATDYALQ 204
           YL  +CRKLK+LNLCGCVKAA+D ALQ
Sbjct: 180 YLASYCRKLKVLNLCGCVKAASDTALQ 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807426|ref|NP_001242641.1| uncharacterized protein LOC100793275 [Glycine max] gi|255644880|gb|ACU22940.1| unknown [Glycine max]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 149/204 (73%), Positives = 172/204 (84%), Gaps = 1/204 (0%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MVG+ + L +E LNL FEK+MM   G +   GV +   VITEWKDIP+ELL++ILSLVD+
Sbjct: 1   MVGKES-LRTEVLNLSFEKLMMVECGGNSGKGVNIKAGVITEWKDIPVELLMQILSLVDD 59

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI+AS VC GWR+AIC GLT LSLSWC  NMNNLVLSL+PK TKLQTL+LRQDKPQLE
Sbjct: 60  QTVIIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLSPKFTKLQTLILRQDKPQLE 119

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DNAVE IAN CHDLQ LDLSKSFKL+DRSLYA+A GC +LT+LNISGC++FSD+ALAYL 
Sbjct: 120 DNAVETIANFCHDLQILDLSKSFKLTDRSLYAVALGCRDLTKLNISGCSAFSDNALAYLA 179

Query: 181 GFCRKLKILNLCGCVKAATDYALQ 204
            FCRKLK+LNLCGCVKAA+D ALQ
Sbjct: 180 SFCRKLKVLNLCGCVKAASDTALQ 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546950|ref|XP_003541882.1| PREDICTED: F-box protein SKP2B-like isoform 1 [Glycine max] gi|356546952|ref|XP_003541883.1| PREDICTED: F-box protein SKP2B-like isoform 2 [Glycine max]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 145/204 (71%), Positives = 168/204 (82%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MVG+ +  + E LN  FEK+MM   G +   GV     VITEWKDIP+ELL++ILSLVD+
Sbjct: 1   MVGKESLRTHEVLNFSFEKLMMVDCGGNSGKGVNFKAGVITEWKDIPVELLMQILSLVDD 60

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TV++AS VC GWR+AIC GLT LSLSWC  NMNNLVLSLAPK TKLQTL+LRQDKPQLE
Sbjct: 61  QTVMIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLAPKFTKLQTLILRQDKPQLE 120

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DNAVE I+N CHDLQ LDLSKSFKL+D SLYA+A GC +LT+LNISGC++FSD+ALAYL 
Sbjct: 121 DNAVETISNFCHDLQILDLSKSFKLTDHSLYAIALGCQDLTKLNISGCSAFSDNALAYLA 180

Query: 181 GFCRKLKILNLCGCVKAATDYALQ 204
            FCRKLK+LNLCGCVKAA+D ALQ
Sbjct: 181 SFCRKLKVLNLCGCVKAASDTALQ 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142727|emb|CBI19930.3| unnamed protein product [Vitis vinifera]

 Score =  295 bits (755), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 153/205 (74%), Positives = 169/205 (82%), Gaps = 6/205 (2%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MVG+      E+L  CFE+++M G G            VITEWKD+PMELLLRI++LVD+
Sbjct: 61  MVGQG----GEELEFCFERLVMGGDGRGGM--DGGGVGVITEWKDVPMELLLRIVALVDD 114

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI+ASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPK TKLQ L LRQDKPQLE
Sbjct: 115 RTVIMASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKFTKLQALTLRQDKPQLE 174

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           D AVE IAN CHDLQDLDLSKSFKLSD SLYALAHGCPNLT+LNISGCT+FSD ALA+L 
Sbjct: 175 DKAVEIIANYCHDLQDLDLSKSFKLSDSSLYALAHGCPNLTKLNISGCTAFSDAALAHLT 234

Query: 181 GFCRKLKILNLCGCVKAATDYALQV 205
            FCR+LKILNLCGC KAA++ ALQ 
Sbjct: 235 SFCRRLKILNLCGCGKAASNRALQA 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492292|ref|XP_002268441.2| PREDICTED: F-box protein SKP2B-like [Vitis vinifera]

 Score =  295 bits (755), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 153/205 (74%), Positives = 169/205 (82%), Gaps = 6/205 (2%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MVG+      E+L  CFE+++M G G            VITEWKD+PMELLLRI++LVD+
Sbjct: 3   MVGQG----GEELEFCFERLVMGGDGRGGM--DGGGVGVITEWKDVPMELLLRIVALVDD 56

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI+ASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPK TKLQ L LRQDKPQLE
Sbjct: 57  RTVIMASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKFTKLQALTLRQDKPQLE 116

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           D AVE IAN CHDLQDLDLSKSFKLSD SLYALAHGCPNLT+LNISGCT+FSD ALA+L 
Sbjct: 117 DKAVEIIANYCHDLQDLDLSKSFKLSDSSLYALAHGCPNLTKLNISGCTAFSDAALAHLT 176

Query: 181 GFCRKLKILNLCGCVKAATDYALQV 205
            FCR+LKILNLCGC KAA++ ALQ 
Sbjct: 177 SFCRRLKILNLCGCGKAASNRALQA 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515961|ref|XP_003526665.1| PREDICTED: F-box protein SKP2A-like [Glycine max]

 Score =  295 bits (755), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 146/204 (71%), Positives = 168/204 (82%), Gaps = 1/204 (0%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MVG+  NL +EDLNLCF+K+MM     +   GV +   VITEWKDIP+ELL++ILSLVD+
Sbjct: 1   MVGK-DNLRAEDLNLCFKKLMMVAGSGNSEKGVNLKVGVITEWKDIPVELLMQILSLVDD 59

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI+ASGVC GWRDAI  GL  LSLSWC  NMNNLVLSL PK  KLQTL+LRQDKPQLE
Sbjct: 60  QTVIIASGVCRGWRDAIYFGLARLSLSWCSKNMNNLVLSLVPKFAKLQTLILRQDKPQLE 119

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DNAVE IA  CH+LQ LDLSKSFKL+DRSLY LA GC +LT+LNISGC++FSD+ALAYL 
Sbjct: 120 DNAVETIAKCCHELQILDLSKSFKLTDRSLYELALGCRDLTKLNISGCSAFSDNALAYLA 179

Query: 181 GFCRKLKILNLCGCVKAATDYALQ 204
            FCRKLK+LNLCGCV+AA+D ALQ
Sbjct: 180 SFCRKLKVLNLCGCVRAASDTALQ 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066761|ref|XP_002302202.1| predicted protein [Populus trichocarpa] gi|222843928|gb|EEE81475.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 144/172 (83%), Positives = 157/172 (91%)

Query: 33  VKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNN 92
           V+++G+VITEWKDIPM+LLLRI+SLVD+ T+I+ASGVCSGWRDAIC GLTHL LSWCKNN
Sbjct: 17  VEIEGLVITEWKDIPMKLLLRIVSLVDDRTLIMASGVCSGWRDAICSGLTHLCLSWCKNN 76

Query: 93  MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA 152
           MNNLVLSLAPK TKLQTLVLRQDKPQLEDNAVE IA+ CHDLQDLDLSKSFKLSD SLYA
Sbjct: 77  MNNLVLSLAPKFTKLQTLVLRQDKPQLEDNAVETIASYCHDLQDLDLSKSFKLSDLSLYA 136

Query: 153 LAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQ 204
           LAHG PNLT+LNISGCT+FSD +L YL  FCRKLKILNLCGCV  ATD ALQ
Sbjct: 137 LAHGFPNLTKLNISGCTAFSDVSLEYLTEFCRKLKILNLCGCVNGATDRALQ 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073061|gb|ACJ84890.1| unknown [Medicago truncatula]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/204 (71%), Positives = 170/204 (83%), Gaps = 4/204 (1%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MVG+  NL +EDLNL FE +MM  AG ++ G +K+   VITEWKDIP+ELL++ILSLVD+
Sbjct: 1   MVGK-DNLKTEDLNLFFENLMMV-AGGEKGGNMKVG--VITEWKDIPVELLMQILSLVDD 56

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI  SGVC GWRD+I  GL  LSLSWC  NMNNLVLSL PK  KLQTL+LRQDKPQL+
Sbjct: 57  QTVIRVSGVCRGWRDSIYFGLARLSLSWCNKNMNNLVLSLVPKFAKLQTLILRQDKPQLD 116

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DN V  IAN CHDLQ LDLSKSFKL+DRSLYA+AHGC +LT+LNISGC++FSD+ALAYL 
Sbjct: 117 DNVVGTIANFCHDLQILDLSKSFKLTDRSLYAIAHGCRDLTKLNISGCSAFSDNALAYLA 176

Query: 181 GFCRKLKILNLCGCVKAATDYALQ 204
           GFCRKLK+LNLCGCV+AA+D ALQ
Sbjct: 177 GFCRKLKVLNLCGCVRAASDTALQ 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2027082	360	SKP2A [Arabidopsis thaliana (t	0.839	0.477	0.779	7.7e-71
TAIR|locus:2025222	360	SKP2B "AT1G77000" [Arabidopsis	0.921	0.525	0.691	3.3e-70
UNIPROTKB|F1NHD2	423	FBXL2 "Uncharacterized protein	0.565	0.274	0.367	2.7e-14
UNIPROTKB|A6H779	423	FBXL2 "F-box/LRR-repeat protei	0.565	0.274	0.376	4.4e-14
UNIPROTKB|F1PWK1	422	FBXL2 "Uncharacterized protein	0.565	0.274	0.341	2.6e-13
UNIPROTKB|Q9UKC9	423	FBXL2 "F-box/LRR-repeat protei	0.565	0.274	0.341	5.5e-13
UNIPROTKB|Q5R3Z8	423	FBXL2 "F-box/LRR-repeat protei	0.565	0.274	0.341	5.5e-13
RGD|1562243	422	Fbxl2 "F-box and leucine-rich	0.565	0.274	0.333	1.2e-12
MGI|MGI:1919429	423	Fbxl2 "F-box and leucine-rich	0.565	0.274	0.333	1.2e-12
WB|WBGene00015350	466	C02F5.7 [Caenorhabditis elegan	0.565	0.248	0.322	3.7e-11

TAIR|locus:2027082 SKP2A [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 134/172 (77%), Positives = 152/172 (88%)

Query:    33 VKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNN 92
             +KM+G+ I EWKDIP+ELL+RILSLVD+  VIVASGVC+GWRDAI  GLT L LSWC NN
Sbjct:    18 MKMEGISIKEWKDIPVELLMRILSLVDDRNVIVASGVCTGWRDAISFGLTRLRLSWCNNN 77

Query:    93 MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA 152
             MN+LVLSL PK  KLQTL LRQDKPQLEDNAVEAIAN CH+LQ+LDLSKS K++DRSLYA
Sbjct:    78 MNSLVLSLVPKFVKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKSLKITDRSLYA 137

Query:   153 LAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQ 204
             LAHGCP+LT+LN+SGCTSFSD A+AYL  FCRKLK+LNLCGCVKA TD AL+
Sbjct:   138 LAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALE 189

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA;IPI

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;IPI

GO:0005634 "nucleus" evidence=IDA

GO:0010311 "lateral root formation" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0071365 "cellular response to auxin stimulus" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2025222 SKP2B "AT1G77000" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 141/204 (69%), Positives = 166/204 (81%)

Query:     1 MVGEATNLSSEDLNLCFEKXXXXXXXXXXXXXVKMDGVVITEWKDIPMELLLRILSLVDE 60
             MV E    + ++LNLCFE              +KM+GV+I+EWKDIP+ELL++IL+LVD+
Sbjct:     1 MVSEGA--TRKELNLCFEN-------------MKMEGVLISEWKDIPVELLMKILNLVDD 45

Query:    61 PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
              TVI+AS +CSGWRDA+ LGLT LSLSWCK NMN+LVLSLAPK  KLQTLVLRQDKPQLE
Sbjct:    46 RTVIIASCICSGWRDAVSLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLE 105

Query:   121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
             DNAVEAIAN CH+LQDLDLSKS K++D SLY+LA GC NLT+LN+SGCTSFSD ALA+L 
Sbjct:   106 DNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLT 165

Query:   181 GFCRKLKILNLCGCVKAATDYALQ 204
              FCRKLKILNLCGCV+A +D  LQ
Sbjct:   166 RFCRKLKILNLCGCVEAVSDNTLQ 189

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0010286 "heat acclimation" evidence=IEP;RCA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IMP

GO:1901332 "negative regulation of lateral root development" evidence=IMP

UNIPROTKB|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 2.7e-14, P = 2.7e-14
 Identities = 43/117 (36%), Positives = 62/117 (52%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L HL+LSWC     + + +L    + L+ L LR    QLED A++ I N CH+L  L
Sbjct:   155 CRNLEHLNLSWCDQITKDGIEALVKGCSGLKALFLR-GCTQLEDEALKHIQNHCHELAIL 213

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
             +L    ++SD  +  +  GC  L  L +SGC + +D +L  L   C +LKIL    C
Sbjct:   214 NLQSCTQISDEGIVKICRGCHRLQSLCVSGCCNLTDASLTALGLNCPRLKILEAARC 270

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 44/117 (37%), Positives = 63/117 (53%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L +L+LSWC     + V +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct:   155 CRHLEYLNLSWCDQITKDGVEALVRGCRGLRALLLR-GCTQLEDEALKHIQNYCHELVSL 213

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
             +L    +++D  +  L  GCP L  L +SGC S +D +L  L   C +L+IL    C
Sbjct:   214 NLQSCSRVTDDGVVQLCRGCPRLQALCLSGCGSLTDASLTALALNCPRLQILEAARC 270

GO:0016020 "membrane" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 40/117 (34%), Positives = 63/117 (53%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L +L+LSWC     + + +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct:   154 CRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLR-GCTQLEDEALKHIQNYCHELVSL 212

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
             +L    +++D  +  +  GC  L  L +SGC++ +D +L  L   C +L+IL    C
Sbjct:   213 NLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALALNCPRLQILEAARC 269

GO:0016020 "membrane" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 5.5e-13, P = 5.5e-13
 Identities = 40/117 (34%), Positives = 63/117 (53%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L +L+LSWC     + + +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct:   155 CRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLR-GCTQLEDEALKHIQNYCHELVSL 213

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
             +L    +++D  +  +  GC  L  L +SGC++ +D +L  L   C +L+IL    C
Sbjct:   214 NLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARC 270

GO:0005516 "calmodulin binding" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006508 "proteolysis" evidence=TAS

UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)]

 Score = 178 (67.7 bits), Expect = 5.5e-13, P = 5.5e-13
 Identities = 40/117 (34%), Positives = 63/117 (53%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L +L+LSWC     + + +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct:   155 CRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLR-GCTQLEDEALKHIQNYCHELVSL 213

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
             +L    +++D  +  +  GC  L  L +SGC++ +D +L  L   C +L+IL    C
Sbjct:   214 NLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARC 270

GO:0016020 "membrane" evidence=ISS

RGD|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 175 (66.7 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 39/117 (33%), Positives = 62/117 (52%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L +L+LSWC       + +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct:   154 CRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLR-GCTQLEDEALKHIQNHCHELVSL 212

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
             +L    +++D  +  +  GC  L  L +SGC++ +D +L  L   C +L++L    C
Sbjct:   213 NLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARC 269

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0006513 "protein monoubiquitination" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IEA;ISO

MGI|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)]

 Score = 175 (66.7 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 39/117 (33%), Positives = 62/117 (52%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L +L+LSWC       + +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct:   155 CRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLR-GCTQLEDEALKHIQNHCHELVSL 213

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
             +L    +++D  +  +  GC  L  L +SGC++ +D +L  L   C +L++L    C
Sbjct:   214 NLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARC 270

GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0006513 "protein monoubiquitination" evidence=IGI;IMP

GO:0016020 "membrane" evidence=ISO

WB|WBGene00015350 C02F5.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 162 (62.1 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 38/118 (32%), Positives = 61/118 (51%)

Query:    78 CLG-LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQD 136
             C G L  LSL  C+N  ++ + +   +   L+ L L + K ++ D + E +   CH L  
Sbjct:   121 CGGFLKELSLKGCENVHDSALRTFTSRCPNLEHLSLYRCK-RVTDASCENLGRYCHKLNY 179

Query:   137 LDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
             L+L     ++DR++  +  GCPNL+ LNIS C +  D  +  +   C+ L  L L GC
Sbjct:   180 LNLENCSSITDRAMKYIGDGCPNLSYLNISWCDAIQDRGVQIILSNCKSLDTLILRGC 237

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LPL4	SKP2A_ARATH	No assigned EC number	0.7058	0.9121	0.5194	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	7e-10
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	4e-09
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	1e-08
smart00367	26	smart00367, LRR_CC, Leucine-rich repeat - CC (cyst	8e-04
pfam12937	47	pfam12937, F-box-like, F-box-like	8e-04

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 80  GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDL 139
           GL  L L  C  +  +  L       KL+ L+L   K  ++D  + A+A SC +LQ LDL
Sbjct: 29  GLEWLELYMCPIS--DPPLDQLSNCNKLKKLILPGSK-LIDDEGLIALAQSCPNLQVLDL 85

Query: 140 SKSFKLSDRSLYALAHGCPNLTRLNIS---GCTSFSDHALAYLCGFCRKLKILNLCGC 194
                ++D  + ALA  CP L  +N+         +D +L+ L   C  L+ +   GC
Sbjct: 86  RACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC 143

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 6/122 (4%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVL-RQDKPQL-EDNAVEAIANSCHDLQ 135
           C  L  L L  C+N  ++ +++LA    KLQT+ L R     L  D ++ A+  +C  LQ
Sbjct: 77  CPNLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQ 136

Query: 136 DLDLSKSFKLSDRSLYALAHGC-PNLTRLNISGCTSFSDHALAYLCGF--CRKLKILNLC 192
            +  +    ++D+ ++ LA GC  +L RL+++ C + +D ++  +        L +L   
Sbjct: 137 TVGFA-GCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFR 195

Query: 193 GC 194
           GC
Sbjct: 196 GC 197

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 9/132 (6%)

Query: 77  ICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQD 136
            C  L  L L   K   +  +++LA     LQ L LR  +  + D+ + A+A +C  LQ 
Sbjct: 50  NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACE-NITDSGIVALATNCPKLQT 108

Query: 137 LDLSKSFK---LSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNL 191
           ++L +      ++D SL AL   C  L  +  +GC  T      LA  C   + L+ L+L
Sbjct: 109 INLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCS--KSLERLSL 166

Query: 192 CGCVKAATDYAL 203
             C    TD ++
Sbjct: 167 NNCRN-LTDQSI 177

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily

 Score = 35.5 bits (83), Expect = 8e-04
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 157 CPNLTRLNISGCTSFSDHALAYLC 180
           CPNL  L++SGCT+ +D  L  L 
Sbjct: 1   CPNLRELDLSGCTNITDEGLQALA 24

Length = 26

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78
            D+P E+LL+I S +D   ++  + VC  WR+   
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELAS 36

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
KOG4341	483	consensus F-box protein containing LRR [General fu	99.84
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.77
KOG4341	483	consensus F-box protein containing LRR [General fu	99.66
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.19
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.0
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.83
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.76
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.58
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.52
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.41
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.41
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.08
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.81
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.79
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.71
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.42
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.24
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.18
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.95
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	96.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.76
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.6
KOG2997	366	consensus F-box protein FBX9 [General function pre	96.38
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.34
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.01
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	95.96
PLN03150	623	hypothetical protein; Provisional	95.94
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.82
PLN03210	1153	Resistant to P. syringae 6; Provisional	95.66
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	95.42
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.2
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.1
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	95.08
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.99
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.82
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.78
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.73
PF13013	109	F-box-like_2: F-box-like domain	94.53
PLN03150	623	hypothetical protein; Provisional	94.41
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	93.92
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	93.33
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	92.6
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.33
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.21
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	90.51
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	90.39
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	89.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	89.62
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.22
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	88.06
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	87.66
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	86.99
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	86.65
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	86.05
PF09372	97	PRANC: PRANC domain; InterPro: IPR018272 This pres	85.82
KOG4308	478	consensus LRR-containing protein [Function unknown	85.48
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	85.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	84.42
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	84.24
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	82.27

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.84  E-value=9.8e-22  Score=156.38  Aligned_cols=159  Identities=30%  Similarity=0.515  Sum_probs=138.6

Q ss_pred             CCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh----cC--------------------------CCceEecCCCCCC
Q 028697           43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI----CL--------------------------GLTHLSLSWCKNN   92 (205)
Q Consensus        43 ~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~----~~--------------------------~l~~L~l~~~~~~   92 (205)
                      --.||.|++..||++|+...+++++.+|+.|...+    +|                          .++.+.+++|..+
T Consensus        72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v  151 (483)
T KOG4341|consen   72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAV  151 (483)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccC
Confidence            35699999999999999999999999999999875    22                          3678888888888


Q ss_pred             CHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCC
Q 028697           93 MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFS  172 (205)
Q Consensus        93 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it  172 (205)
                      .+..+..+...|||+++|.+.+| ..++|..+..+++.|++|+.|++..|..+|+..++.+.+.|++|++++++.|+.|+
T Consensus       152 ~~sslrt~~~~CpnIehL~l~gc-~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~  230 (483)
T KOG4341|consen  152 GDSSLRTFASNCPNIEHLALYGC-KKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQIS  230 (483)
T ss_pred             CcchhhHHhhhCCchhhhhhhcc-eeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhh
Confidence            88888889999999999999888 58999999999999999999999998889999999899999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeEeccCCccccccccc
Q 028697          173 DHALAYLCGFCRKLKILNLCGCVKAATDYAL  203 (205)
Q Consensus       173 ~~~l~~l~~~~~~L~~L~l~~c~~~~~d~~~  203 (205)
                      ..+++.+.++|++++.+..+||.. .+++++
T Consensus       231 ~~gv~~~~rG~~~l~~~~~kGC~e-~~le~l  260 (483)
T KOG4341|consen  231 GNGVQALQRGCKELEKLSLKGCLE-LELEAL  260 (483)
T ss_pred             cCcchHHhccchhhhhhhhccccc-ccHHHH
Confidence            988999998888888888888876 666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.4e-18  Score=133.59  Aligned_cols=155  Identities=26%  Similarity=0.397  Sum_probs=94.7

Q ss_pred             CCCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh----cC------------------------------------
Q 028697           40 ITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI----CL------------------------------------   79 (205)
Q Consensus        40 ~~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~----~~------------------------------------   79 (205)
                      ...|..||||+++.||+.|..+++++++.|||||+++.    .|                                    
T Consensus        95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~p  174 (419)
T KOG2120|consen   95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQP  174 (419)
T ss_pred             CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCc
Confidence            34499999999999999999999999999999999973    22                                    


Q ss_pred             ------------------------------------------------------------CCceEecCCCCCCCHHHHHH
Q 028697           80 ------------------------------------------------------------GLTHLSLSWCKNNMNNLVLS   99 (205)
Q Consensus        80 ------------------------------------------------------------~l~~L~l~~~~~~~~~~~~~   99 (205)
                                                                                  +|+.++++.|..++...+..
T Consensus       175 rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l  254 (419)
T KOG2120|consen  175 RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL  254 (419)
T ss_pred             hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH
Confidence                                                                        35555555555555555556


Q ss_pred             HHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCC-CCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHH
Q 028697          100 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSF-KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY  178 (205)
Q Consensus       100 l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~  178 (205)
                      +...|..|.+|++++| ..+++..-..+++--++|..|+++++. ++.+..+..+.+.||+|.+|+++.|..+++..+..
T Consensus       255 l~~scs~L~~LNlsWc-~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~  333 (419)
T KOG2120|consen  255 LLSSCSRLDELNLSWC-FLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  333 (419)
T ss_pred             HHHhhhhHhhcCchHh-hccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence            6666666666666665 233333222222223445555555442 23344455555556666666666655555544444


Q ss_pred             HHhcCCCCCeEeccCCcc
Q 028697          179 LCGFCRKLKILNLCGCVK  196 (205)
Q Consensus       179 l~~~~~~L~~L~l~~c~~  196 (205)
                      +. .++.|++|.++.|+-
T Consensus       334 ~~-kf~~L~~lSlsRCY~  350 (419)
T KOG2120|consen  334 FF-KFNYLQHLSLSRCYD  350 (419)
T ss_pred             HH-hcchheeeehhhhcC
Confidence            43 455555555555553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.66  E-value=6.8e-17  Score=129.03  Aligned_cols=146  Identities=29%  Similarity=0.510  Sum_probs=109.3

Q ss_pred             cCChhHHHHhhccchhhHHhh------------------cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCC
Q 028697           57 LVDEPTVIVASGVCSGWRDAI------------------CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQ  118 (205)
Q Consensus        57 ~l~~~~l~~~~~vck~w~~~~------------------~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  118 (205)
                      ++....+..++++|+.|+.+.                  +++++++++++|.+++...+..+.+.|.+++.+.+.+| ..
T Consensus       176 ~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC-~e  254 (483)
T KOG4341|consen  176 KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC-LE  254 (483)
T ss_pred             eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc-cc
Confidence            557777788888999888763                  45677888888877777666677777777766666665 46


Q ss_pred             CCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccc
Q 028697          119 LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAA  198 (205)
Q Consensus       119 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~  198 (205)
                      ..++.+..+..+|+.+.++++..|..+||+++..+...|..|+.|..++|+.+++..+.++..+|++|+.|.+.+|.+ +
T Consensus       255 ~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-f  333 (483)
T KOG4341|consen  255 LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-F  333 (483)
T ss_pred             ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch-h
Confidence            666666666666677777777777777888877777777778888888888888888888888888888888888877 7


Q ss_pred             cccccc
Q 028697          199 TDYALQ  204 (205)
Q Consensus       199 ~d~~~~  204 (205)
                      +|.+++
T Consensus       334 sd~~ft  339 (483)
T KOG4341|consen  334 SDRGFT  339 (483)
T ss_pred             hhhhhh
Confidence            777654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.29  E-value=5.7e-12  Score=106.11  Aligned_cols=116  Identities=34%  Similarity=0.516  Sum_probs=74.0

Q ss_pred             cCCCceEecCCC-CC--CCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHH
Q 028697           78 CLGLTHLSLSWC-KN--NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALA  154 (205)
Q Consensus        78 ~~~l~~L~l~~~-~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~  154 (205)
                      +++++.++++.+ ..  ........+...|++|+.|+++.+ ..++|..+..++..|++|+.|.+.+|..++++++..+.
T Consensus       213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~  291 (482)
T KOG1947|consen  213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC-GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA  291 (482)
T ss_pred             CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh-hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence            456666666542 11  122223346666677777777765 24677777777777777777776666557777777777


Q ss_pred             hcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCC
Q 028697          155 HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC  194 (205)
Q Consensus       155 ~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c  194 (205)
                      +.|++|++|++++|..+++.++..++..|++|+.|.+..+
T Consensus       292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  292 ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            7777777777777777777777777766776666554433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.19  E-value=1.8e-10  Score=97.05  Aligned_cols=126  Identities=33%  Similarity=0.486  Sum_probs=101.5

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCC--HHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHh
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE--DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAH  155 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  155 (205)
                      ++.++.+.+..|..+++..+..+...+++|++|+++.+...+.  ......+...|++|+.|++.++..++|.++..++.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            5667788888887788777888889999999999986211222  22344466778899999999986799999999998


Q ss_pred             cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccccccccc
Q 028697          156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQ  204 (205)
Q Consensus       156 ~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d~~~~  204 (205)
                      .|++|++|.+.+|..+|++++..++..|++|++|++++|.. ++|.++.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~-~~d~~l~  314 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG-LTDSGLE  314 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc-chHHHHH
Confidence            89999999988887799999999999999999999999987 7777653

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.00  E-value=4.5e-10  Score=64.27  Aligned_cols=36  Identities=33%  Similarity=0.578  Sum_probs=31.9

Q ss_pred             CCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhhc
Q 028697           43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC   78 (205)
Q Consensus        43 ~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~~   78 (205)
                      |..||+|++.+||+|++..++.++++|||+|++++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            678999999999999999999999999999999863

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.83  E-value=5e-08  Score=78.04  Aligned_cols=89  Identities=27%  Similarity=0.309  Sum_probs=41.5

Q ss_pred             cCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHHHHH---hcCCCCCEEeecCCCCCCHHHH
Q 028697          103 KLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLYALA---HGCPNLTRLNISGCTSFSDHAL  176 (205)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~it~~~l  176 (205)
                      .+++|++|+++.+  .+++..+..+..   .+++|+.|+++++ .+++.+...+.   ..+++|++|++++| .+++.++
T Consensus       163 ~~~~L~~L~l~~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~  238 (319)
T cd00116         163 ANRDLKELNLANN--GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGA  238 (319)
T ss_pred             hCCCcCEEECcCC--CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHH
Confidence            3445555555553  444433333322   2235555555554 44444433322   23445555555554 4555555


Q ss_pred             HHHHhcC----CCCCeEeccCCc
Q 028697          177 AYLCGFC----RKLKILNLCGCV  195 (205)
Q Consensus       177 ~~l~~~~----~~L~~L~l~~c~  195 (205)
                      ..++..+    ++|++|++.+|.
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCC
Confidence            5554433    455555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2e-09  Score=83.63  Aligned_cols=116  Identities=27%  Similarity=0.427  Sum_probs=92.8

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      |..|..|++++|.-.++..-..+..-.++|+.|+++++...+.+..++.+.++||+|..|+++.+..++++.+..+. .+
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf  337 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KF  337 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hc
Confidence            56788999999987666644455556678999999988667777788888889999999999988788886655554 58


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +.|++|.++.|-.|..+.+..+. .-|.|.+|++.||.
T Consensus       338 ~~L~~lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  338 NYLQHLSLSRCYDIIPETLLELN-SKPSLVYLDVFGCV  374 (419)
T ss_pred             chheeeehhhhcCCChHHeeeec-cCcceEEEEecccc
Confidence            88999999999888888877776 56889999999885

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.76  E-value=1e-07  Score=76.26  Aligned_cols=117  Identities=25%  Similarity=0.219  Sum_probs=87.8

Q ss_pred             CCCceEecCCCCCCCHHHHHHHH---hcCCCccEEEecCCCCCCCHHHHHHH---HhcCcccceeeccCCCCCCHHHHHH
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLA---PKLTKLQTLVLRQDKPQLEDNAVEAI---ANSCHDLQDLDLSKSFKLSDRSLYA  152 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~l~~~~~~~  152 (205)
                      ..+++|+++++. +++..+..+.   ..+++|++|++++|  .+++.....+   ...+++|+.|+++++ .+++.++..
T Consensus       165 ~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~  240 (319)
T cd00116         165 RDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN--GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAA  240 (319)
T ss_pred             CCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC--ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHH
Confidence            468888888754 5544444443   34569999999997  6776655444   345789999999997 799888888


Q ss_pred             HHhcC----CCCCEEeecCCCCCCHHHHHHHHh---cCCCCCeEeccCCcccccccc
Q 028697          153 LAHGC----PNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYA  202 (205)
Q Consensus       153 l~~~~----~~L~~L~l~~~~~it~~~l~~l~~---~~~~L~~L~l~~c~~~~~d~~  202 (205)
                      +...+    +.|++|++++| .+++.+...+.+   .+++|++++++++.  +++++
T Consensus       241 l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~--l~~~~  294 (319)
T cd00116         241 LASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK--FGEEG  294 (319)
T ss_pred             HHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC--CcHHH
Confidence            77765    79999999998 888777766654   45689999999987  56653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=4.2e-08  Score=72.22  Aligned_cols=86  Identities=22%  Similarity=0.344  Sum_probs=73.2

Q ss_pred             ccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCC
Q 028697          107 LQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKL  186 (205)
Q Consensus       107 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L  186 (205)
                      ++.++-+++  .+...+++.+. .++.|+.|.+.+|.++.|.++..+....++|+.|++++|+.||+.++..+. .+++|
T Consensus       103 IeaVDAsds--~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL  178 (221)
T KOG3864|consen  103 IEAVDASDS--SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL  178 (221)
T ss_pred             EEEEecCCc--hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence            566666664  77778888885 588999999999999999999999988899999999999999999998888 68999


Q ss_pred             CeEeccCCcc
Q 028697          187 KILNLCGCVK  196 (205)
Q Consensus       187 ~~L~l~~c~~  196 (205)
                      +.|.+.+-+-
T Consensus       179 r~L~l~~l~~  188 (221)
T KOG3864|consen  179 RRLHLYDLPY  188 (221)
T ss_pred             HHHHhcCchh
Confidence            9998887654

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.52  E-value=4.6e-08  Score=56.06  Aligned_cols=36  Identities=33%  Similarity=0.546  Sum_probs=30.6

Q ss_pred             CCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697           42 EWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI   77 (205)
Q Consensus        42 ~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~   77 (205)
                      .|.+||+|++.+||+|++..++..++.|||+|++++
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~   37 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLV   37 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHH
Confidence            367899999999999999999999999999999974

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.41  E-value=3.1e-07  Score=50.58  Aligned_cols=32  Identities=31%  Similarity=0.502  Sum_probs=30.6

Q ss_pred             CCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697           46 IPMELLLRILSLVDEPTVIVASGVCSGWRDAI   77 (205)
Q Consensus        46 Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~   77 (205)
                      ||+|++.+||.|++..++.+++.|||+|+.++
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~   32 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLI   32 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            79999999999999999999999999999984

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.41  E-value=4.8e-07  Score=79.49  Aligned_cols=67  Identities=24%  Similarity=0.363  Sum_probs=51.0

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCH
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD  147 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~  147 (205)
                      ..+|++|++++...++......+...+|+|++|.+++-  .+....+..+...+|+|.+|+++++ ++++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~--~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n  187 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR--QFDNDDFSQLCASFPNLRSLDISGT-NISN  187 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc--eecchhHHHHhhccCccceeecCCC-CccC
Confidence            34678888888776777777788888888888888873  5555567778888888888888885 5553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.10  E-value=1.7e-05  Score=63.13  Aligned_cols=115  Identities=23%  Similarity=0.243  Sum_probs=82.2

Q ss_pred             cCCCceEecCCCCCCCH--HHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHHH
Q 028697           78 CLGLTHLSLSWCKNNMN--NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLYA  152 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~  152 (205)
                      .+.++.+.++....-+.  ..+..-+.+||+|+.|+++.+  .++...=..++.   ..++|+.|+++.| .+.+.+...
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN--tft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a  260 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN--TFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIA  260 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc--hhhhHHHHHHHHHhcccchheeeccccc-ccccccHHH
Confidence            45567777765443222  234455679999999999986  566555445544   3468999999998 788777666


Q ss_pred             HH----hcCCCCCEEeecCCCCCCHHHHHHHHh---cCCCCCeEeccCCcc
Q 028697          153 LA----HGCPNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCVK  196 (205)
Q Consensus       153 l~----~~~~~L~~L~l~~~~~it~~~l~~l~~---~~~~L~~L~l~~c~~  196 (205)
                      +.    ...|.|+.|.+.++ .|+..+...++.   .-|.|+.|++.+|..
T Consensus       261 ~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            54    45689999999887 888877766662   368899999999974

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=2.1e-06  Score=70.03  Aligned_cols=109  Identities=18%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCC--CHHHHHHHHhcC
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKL--SDRSLYALAHGC  157 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l--~~~~~~~l~~~~  157 (205)
                      .|+.+.+.++. +.........+.||+++.|+++.. ....=..+..|++.+|+|+.|+++.+--.  ++....   ...
T Consensus       122 kL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~---~~l  196 (505)
T KOG3207|consen  122 KLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT---LLL  196 (505)
T ss_pred             hhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccch---hhh
Confidence            34555555543 233333356667777777777764 12222345566666777777777654210  111111   134


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCC
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC  194 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c  194 (205)
                      +.|+.|.+++| +++...+..++..||+|+.|.+.+-
T Consensus       197 ~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  197 SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            56777777777 7777777777777777777776665

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=8.3e-06  Score=60.28  Aligned_cols=104  Identities=23%  Similarity=0.222  Sum_probs=74.6

Q ss_pred             CceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCC
Q 028697           81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL  160 (205)
Q Consensus        81 l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L  160 (205)
                      ++.++-+++. +...++.. ...++.++.|.+..| .++.|..+..+....++|+.|++++|+.||+.++.-+.. +++|
T Consensus       103 IeaVDAsds~-I~~eGle~-L~~l~~i~~l~l~~c-k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknL  178 (221)
T KOG3864|consen  103 IEAVDASDSS-IMYEGLEH-LRDLRSIKSLSLANC-KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNL  178 (221)
T ss_pred             EEEEecCCch-HHHHHHHH-Hhccchhhhheeccc-cchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhh
Confidence            4555555432 33444433 346788999999998 699999999999988999999999999999999988764 8999


Q ss_pred             CEEeecCCCCCCHHHHHHH--HhcCCCCCe
Q 028697          161 TRLNISGCTSFSDHALAYL--CGFCRKLKI  188 (205)
Q Consensus       161 ~~L~l~~~~~it~~~l~~l--~~~~~~L~~  188 (205)
                      +.|++.+-..+..-.....  -..+|++..
T Consensus       179 r~L~l~~l~~v~~~e~~~~~Le~aLP~c~I  208 (221)
T KOG3864|consen  179 RRLHLYDLPYVANLELVQRQLEEALPKCDI  208 (221)
T ss_pred             HHHHhcCchhhhchHHHHHHHHHhCcccce
Confidence            9999977655543333222  234565543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=2.8e-06  Score=69.33  Aligned_cols=88  Identities=22%  Similarity=0.173  Sum_probs=62.3

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +++++.|+++..---....+..++..+|+|+.|+++.+.  +....=.......++|+.|.++.| +++-..+..+...+
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr--l~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~f  221 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR--LSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTF  221 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc--ccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhC
Confidence            678888888865433455677888889999999998752  211111111124678888889888 78888888888888


Q ss_pred             CCCCEEeecCC
Q 028697          158 PNLTRLNISGC  168 (205)
Q Consensus       158 ~~L~~L~l~~~  168 (205)
                      |+|+.|.+.++
T Consensus       222 Psl~~L~L~~N  232 (505)
T KOG3207|consen  222 PSLEVLYLEAN  232 (505)
T ss_pred             CcHHHhhhhcc
Confidence            88888888765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.85  E-value=3.6e-06  Score=61.71  Aligned_cols=140  Identities=21%  Similarity=0.214  Sum_probs=41.3

Q ss_pred             CCHHHHHHHHhcCChhHHHHhhccchhhH-----HhhcCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCC
Q 028697           46 IPMELLLRILSLVDEPTVIVASGVCSGWR-----DAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE  120 (205)
Q Consensus        46 Lp~e~l~~If~~l~~~~l~~~~~vck~w~-----~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  120 (205)
                      |..+.+++|.++.+...+....+-..+-.     ...+..++.|+++++.-..-+    -...+++|+.|+++.+  .++
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~----~l~~L~~L~~L~L~~N--~I~   77 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE----GLPGLPRLKTLDLSNN--RIS   77 (175)
T ss_dssp             --------------------------------S--TT-TT--EEE-TTS--S--T----T----TT--EEE--SS-----
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc----CccChhhhhhcccCCC--CCC
Confidence            45567777777775333322222211111     112456778888775432222    2334677888888775  444


Q ss_pred             HHHHHHHHhcCcccceeeccCCCCCCH-HHHHHHHhcCCCCCEEeecCCCCCCHH--HHHHHHhcCCCCCeEeccCCc
Q 028697          121 DNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALAHGCPNLTRLNISGCTSFSDH--ALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       121 ~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~it~~--~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      .- -..+...+|+|+.|.++++ .+.+ ..+..+ ..+|+|++|++.++ .+++.  .-..+...+|+|+.||-....
T Consensus        78 ~i-~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L-~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   78 SI-SEGLDKNLPNLQELYLSNN-KISDLNELEPL-SSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             S--CHHHHHH-TT--EEE-TTS----SCCCCGGG-GG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             cc-ccchHHhCCcCCEEECcCC-cCCChHHhHHH-HcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEcc
Confidence            31 1223345778888888775 4433 223333 35788888888775 33321  122334467888888765443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.81  E-value=1.3e-05  Score=70.63  Aligned_cols=66  Identities=24%  Similarity=0.356  Sum_probs=58.1

Q ss_pred             CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCH
Q 028697          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD  173 (205)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~  173 (205)
                      .+|++|++++. ..++..+...++..+|+|++|.+.+. .+..+.+..++.++|+|..||++++ ++++
T Consensus       122 ~nL~~LdI~G~-~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n  187 (699)
T KOG3665|consen  122 QNLQHLDISGS-ELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISN  187 (699)
T ss_pred             HhhhhcCcccc-chhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccC
Confidence            58999999985 67888899999999999999999985 6666679999999999999999997 6664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.79  E-value=0.00013  Score=58.31  Aligned_cols=113  Identities=19%  Similarity=0.272  Sum_probs=71.5

Q ss_pred             CCCceEecCCCCC--CCHHHHHHHHhcCCCccEEEecCCCCCCCHH---HHHHHHhcCcccceeeccCCCCCCHHHHHHH
Q 028697           79 LGLTHLSLSWCKN--NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDN---AVEAIANSCHDLQDLDLSKSFKLSDRSLYAL  153 (205)
Q Consensus        79 ~~l~~L~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  153 (205)
                      +.|+.+..++...  -+...+...++.+|+|+.+.+.++  .+...   .+..-..+|++|+.|++..+ ..+.++-..+
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN--~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~L  233 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN--GIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVAL  233 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecc--cccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHH
Confidence            4566666655432  123345566677788888888775  33322   33333457888888888775 5666665555


Q ss_pred             Hhc---CCCCCEEeecCCCCCCHHHHHHHH----hcCCCCCeEeccCCc
Q 028697          154 AHG---CPNLTRLNISGCTSFSDHALAYLC----GFCRKLKILNLCGCV  195 (205)
Q Consensus       154 ~~~---~~~L~~L~l~~~~~it~~~l~~l~----~~~~~L~~L~l~~c~  195 (205)
                      +..   .|+|+.|.+++| .+.+.+..++.    ...|+|+.|.+.|+.
T Consensus       234 akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch
Confidence            543   456778888887 66665555555    356788888888876

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.71  E-value=5.1e-05  Score=37.32  Aligned_cols=24  Identities=50%  Similarity=1.027  Sum_probs=15.9

Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHH
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLC  180 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~  180 (205)
                      ||+|++|++++|.+|||.++..++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            466666666666666666666665

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.42  E-value=0.00012  Score=67.36  Aligned_cols=38  Identities=18%  Similarity=0.210  Sum_probs=21.0

Q ss_pred             cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       156 ~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      .+++|++|+++++ .++...-..+. .+++|++|++++|.
T Consensus       162 ~l~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~L~~n~  199 (968)
T PLN00113        162 SFSSLKVLDLGGN-VLVGKIPNSLT-NLTSLEFLTLASNQ  199 (968)
T ss_pred             cCCCCCEEECccC-cccccCChhhh-hCcCCCeeeccCCC
Confidence            4566777777665 33322222222 46677777777665

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.30  E-value=0.00034  Score=34.32  Aligned_cols=24  Identities=46%  Similarity=0.753  Sum_probs=14.3

Q ss_pred             CcccceeeccCCCCCCHHHHHHHH
Q 028697          131 CHDLQDLDLSKSFKLSDRSLYALA  154 (205)
Q Consensus       131 ~~~L~~L~l~~~~~l~~~~~~~l~  154 (205)
                      |++|+.|++.+|..|+|.++..++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            455666666666666666665554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.24  E-value=9e-05  Score=54.36  Aligned_cols=107  Identities=31%  Similarity=0.405  Sum_probs=39.8

Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  159 (205)
                      .++.|+++++..   ..+..+...+.+|+.|+++.+  .++.  +..+. .+++|+.|+++++ .++.-+ ..+...+|+
T Consensus        20 ~~~~L~L~~n~I---~~Ie~L~~~l~~L~~L~Ls~N--~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~   89 (175)
T PF14580_consen   20 KLRELNLRGNQI---STIENLGATLDKLEVLDLSNN--QITK--LEGLP-GLPRLKTLDLSNN-RISSIS-EGLDKNLPN   89 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS----S----TT-----TT--EEE--SS----S-C-HHHHHH-TT
T ss_pred             cccccccccccc---ccccchhhhhcCCCEEECCCC--CCcc--ccCcc-ChhhhhhcccCCC-CCCccc-cchHHhCCc
Confidence            567888887542   223345556789999999997  5553  44443 4789999999986 565431 123345899


Q ss_pred             CCEEeecCCCCCCH-HHHHHHHhcCCCCCeEeccCCcccccc
Q 028697          160 LTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCVKAATD  200 (205)
Q Consensus       160 L~~L~l~~~~~it~-~~l~~l~~~~~~L~~L~l~~c~~~~~d  200 (205)
                      |++|.++++ .|.+ ..+..+. .||+|++|++.+.|  +++
T Consensus        90 L~~L~L~~N-~I~~l~~l~~L~-~l~~L~~L~L~~NP--v~~  127 (175)
T PF14580_consen   90 LQELYLSNN-KISDLNELEPLS-SLPKLRVLSLEGNP--VCE  127 (175)
T ss_dssp             --EEE-TTS----SCCCCGGGG-G-TT--EEE-TT-G--GGG
T ss_pred             CCEEECcCC-cCCChHHhHHHH-cCCCcceeeccCCc--ccc
Confidence            999999876 6654 3344554 79999999999988  454

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.18  E-value=0.00038  Score=64.15  Aligned_cols=14  Identities=21%  Similarity=0.309  Sum_probs=7.5

Q ss_pred             hcCCCccEEEecCC
Q 028697          102 PKLTKLQTLVLRQD  115 (205)
Q Consensus       102 ~~~~~L~~L~l~~~  115 (205)
                      ..+++|++|+++++
T Consensus       161 ~~l~~L~~L~L~~n  174 (968)
T PLN00113        161 GSFSSLKVLDLGGN  174 (968)
T ss_pred             hcCCCCCEEECccC
Confidence            34555555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.00045  Score=54.41  Aligned_cols=106  Identities=22%  Similarity=0.188  Sum_probs=74.3

Q ss_pred             EecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHH-HHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCE
Q 028697           84 LSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDN-AVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTR  162 (205)
Q Consensus        84 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~  162 (205)
                      +.+.+|..-+...+..+...+..++++++.++  .++|. .+..|.+++|+|+.|+++.+ .+.. .+..+.-...+|++
T Consensus        50 lvln~~~id~~gd~~~~~~~~~~v~elDL~~N--~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   50 LVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN--LISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLKNLRV  125 (418)
T ss_pred             heecCCCCCcchhHHHHHHHhhhhhhhhcccc--hhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCcccccceEE
Confidence            33445554455566778888888888888885  77774 46667788888999988875 3322 23333233568888


Q ss_pred             EeecCCCCCCHHHHHHHHhcCCCCCeEeccCC
Q 028697          163 LNISGCTSFSDHALAYLCGFCRKLKILNLCGC  194 (205)
Q Consensus       163 L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c  194 (205)
                      |.++|. ++.........+..|.+++|+++..
T Consensus       126 lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  126 LVLNGT-GLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             EEEcCC-CCChhhhhhhhhcchhhhhhhhccc
Confidence            888774 8888888888888888888877754

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=96.87  E-value=0.0009  Score=54.63  Aligned_cols=38  Identities=24%  Similarity=0.618  Sum_probs=34.8

Q ss_pred             CCCCCCCHHHHHHHHhcC-ChhHHHHhhccchhhHHhhc
Q 028697           41 TEWKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDAIC   78 (205)
Q Consensus        41 ~~~~~Lp~e~l~~If~~l-~~~~l~~~~~vck~w~~~~~   78 (205)
                      ..|.+||.|+|..|.++| ...|+++.+.||+.||..+.
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            469999999999999999 78899999999999999753

>PLN03210 Resistant to P

Probab=96.76  E-value=0.0012  Score=61.96  Aligned_cols=39  Identities=18%  Similarity=0.412  Sum_probs=26.0

Q ss_pred             cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697          156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK  196 (205)
Q Consensus       156 ~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~  196 (205)
                      .+++|+.|++++|.+++.-.  .-...+++|+.+++++|.+
T Consensus       867 ~l~~L~~L~L~~C~~L~~l~--~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        867 KFSNLSFLDMNGCNNLQRVS--LNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             cCCCCCEEECCCCCCcCccC--cccccccCCCeeecCCCcc
Confidence            46778888888777665422  2223567788888888876

syringae 6; Provisional

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.74  E-value=0.012  Score=46.00  Aligned_cols=97  Identities=16%  Similarity=0.294  Sum_probs=60.7

Q ss_pred             cCCCccEEEecCCC-CCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHH----hcCCCCCEEeecCCCCCCHHHHH
Q 028697          103 KLTKLQTLVLRQDK-PQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALA----HGCPNLTRLNISGCTSFSDHALA  177 (205)
Q Consensus       103 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~~L~~L~l~~~~~it~~~l~  177 (205)
                      .-|.|+.+....+. .+.+........+...+|+.+.+-.+ .|.++++..+.    ..+.+|+.|++..+ .+|..+-.
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~  232 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSR  232 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHH
Confidence            33567777665531 12223333344443357888887775 77777655443    45788999998775 67777766


Q ss_pred             HHHhcC---CCCCeEeccCCccccccccc
Q 028697          178 YLCGFC---RKLKILNLCGCVKAATDYAL  203 (205)
Q Consensus       178 ~l~~~~---~~L~~L~l~~c~~~~~d~~~  203 (205)
                      +++...   +.|++|.+.+|-  ++.+|.
T Consensus       233 ~La~al~~W~~lrEL~lnDCl--ls~~G~  259 (388)
T COG5238         233 YLADALCEWNLLRELRLNDCL--LSNEGV  259 (388)
T ss_pred             HHHHHhcccchhhhccccchh--hccccH
Confidence            666543   567888888887  455554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.60  E-value=0.0027  Score=35.35  Aligned_cols=38  Identities=29%  Similarity=0.317  Sum_probs=24.5

Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccccc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD  200 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d  200 (205)
                      ++|++|+++++ .+++  +......+++|++|+++++.  ++|
T Consensus         1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~--i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNP--ISD   38 (44)
T ss_dssp             TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSC--CSB
T ss_pred             CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCC--CCC
Confidence            46788888775 6765  44423478888888888875  554

...

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=96.38  E-value=0.0019  Score=51.00  Aligned_cols=38  Identities=29%  Similarity=0.445  Sum_probs=32.3

Q ss_pred             CCCCCCCCHHHHHHHHhcC-----ChhHHHHhhccchhhHHhh
Q 028697           40 ITEWKDIPMELLLRILSLV-----DEPTVIVASGVCSGWRDAI   77 (205)
Q Consensus        40 ~~~~~~Lp~e~l~~If~~l-----~~~~l~~~~~vck~w~~~~   77 (205)
                      ...+..||||+|.+||..+     +.+++.+++.|||.|+..+
T Consensus       104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~  146 (366)
T KOG2997|consen  104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA  146 (366)
T ss_pred             hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence            3446789999999999865     6788999999999999874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.34  E-value=8.8e-05  Score=44.50  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=17.2

Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++.-.-. ...++++|++|+++++.
T Consensus        24 l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   24 LPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             GTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSSS
T ss_pred             CCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCCc
Confidence            455555555543 33321111 12255666666666553

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.01  E-value=0.006  Score=29.07  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=11.5

Q ss_pred             CCCCEEeecCCCCCCHHHHHHHH
Q 028697          158 PNLTRLNISGCTSFSDHALAYLC  180 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~  180 (205)
                      ++|++|++++| .+++.++.+|+
T Consensus         2 ~~L~~L~l~~n-~i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNN-QITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred             CCCCEEEccCC-cCCHHHHHHhC
Confidence            45666666555 46666665554

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=95.96  E-value=0.0052  Score=55.20  Aligned_cols=85  Identities=28%  Similarity=0.365  Sum_probs=46.6

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~  181 (205)
                      .+++.|++|+++++  .++. .-..++ .|+.|+.|..+++.-+.-.   .+ ...++|+.++++ |.+++...+.+...
T Consensus       404 ~kle~LeeL~LSGN--kL~~-Lp~tva-~~~~L~tL~ahsN~l~~fP---e~-~~l~qL~~lDlS-~N~L~~~~l~~~~p  474 (1081)
T KOG0618|consen  404 RKLEELEELNLSGN--KLTT-LPDTVA-NLGRLHTLRAHSNQLLSFP---EL-AQLPQLKVLDLS-CNNLSEVTLPEALP  474 (1081)
T ss_pred             hchHHhHHHhcccc--hhhh-hhHHHH-hhhhhHHHhhcCCceeech---hh-hhcCcceEEecc-cchhhhhhhhhhCC
Confidence            34455666666654  2221 112222 2455555555443111111   11 236788899994 45777776666553


Q ss_pred             cCCCCCeEeccCCcc
Q 028697          182 FCRKLKILNLCGCVK  196 (205)
Q Consensus       182 ~~~~L~~L~l~~c~~  196 (205)
                      . |+|++|+++|-.+
T Consensus       475 ~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  475 S-PNLKYLDLSGNTR  488 (1081)
T ss_pred             C-cccceeeccCCcc
Confidence            3 7899999998775

>PLN03150 hypothetical protein; Provisional

Probab=95.94  E-value=0.0096  Score=52.49  Aligned_cols=116  Identities=23%  Similarity=0.235  Sum_probs=70.4

Q ss_pred             hhHHhhcC--------CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCC
Q 028697           72 GWRDAICL--------GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSF  143 (205)
Q Consensus        72 ~w~~~~~~--------~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~  143 (205)
                      .|..+.|.        .+..|+|+++. +.. .+..-...+++|+.|+++.+  .+....-..+ ..+++|+.|+++++ 
T Consensus       403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~-L~g-~ip~~i~~L~~L~~L~Ls~N--~l~g~iP~~~-~~l~~L~~LdLs~N-  476 (623)
T PLN03150        403 PWSGADCQFDSTKGKWFIDGLGLDNQG-LRG-FIPNDISKLRHLQSINLSGN--SIRGNIPPSL-GSITSLEVLDLSYN-  476 (623)
T ss_pred             ccccceeeccCCCCceEEEEEECCCCC-ccc-cCCHHHhCCCCCCEEECCCC--cccCcCChHH-hCCCCCCEEECCCC-
Confidence            58877652        26778887653 221 12223457899999999986  4443322233 45889999999987 


Q ss_pred             CCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          144 KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       144 ~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      .++...-.. ...+++|++|+++++ .++...-..+.....++..+++.+..
T Consensus       477 ~lsg~iP~~-l~~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        477 SFNGSIPES-LGQLTSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCCCCCchH-HhcCCCCCEEECcCC-cccccCChHHhhccccCceEEecCCc
Confidence            454321112 235889999999886 45433223333333456677776554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=0.0087  Score=46.96  Aligned_cols=99  Identities=18%  Similarity=0.265  Sum_probs=61.2

Q ss_pred             ceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCC
Q 028697           82 THLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLT  161 (205)
Q Consensus        82 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~  161 (205)
                      +.|+.-+|. +++   .++..+.|.|+.|.|+-+  .++  .+..+. +|.+|+.|.|..+ .|.+-.-..-..++|+|+
T Consensus        22 kKLNcwg~~-L~D---Isic~kMp~lEVLsLSvN--kIs--sL~pl~-rCtrLkElYLRkN-~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   22 KKLNCWGCG-LDD---ISICEKMPLLEVLSLSVN--KIS--SLAPLQ-RCTRLKELYLRKN-CIESLDELEYLKNLPSLR   91 (388)
T ss_pred             hhhcccCCC-ccH---HHHHHhcccceeEEeecc--ccc--cchhHH-HHHHHHHHHHHhc-ccccHHHHHHHhcCchhh
Confidence            555554554 444   357778888998888875  444  566664 5888888888875 455444333345688888


Q ss_pred             EEeecCCCCCCHH---HHHHHHhcCCCCCeEe
Q 028697          162 RLNISGCTSFSDH---ALAYLCGFCRKLKILN  190 (205)
Q Consensus       162 ~L~l~~~~~it~~---~l~~l~~~~~~L~~L~  190 (205)
                      .|.|..+......   --....+-+|+|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888654333222   2223335678887775

>PLN03210 Resistant to P

Probab=95.66  E-value=0.014  Score=55.08  Aligned_cols=12  Identities=33%  Similarity=0.540  Sum_probs=5.5

Q ss_pred             CcccceeeccCC
Q 028697          131 CHDLQDLDLSKS  142 (205)
Q Consensus       131 ~~~L~~L~l~~~  142 (205)
                      +++|+.|++++|
T Consensus       656 l~~Le~L~L~~c  667 (1153)
T PLN03210        656 ATNLETLKLSDC  667 (1153)
T ss_pred             CCcccEEEecCC
Confidence            344444444444

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=95.42  E-value=0.0099  Score=51.17  Aligned_cols=62  Identities=21%  Similarity=0.284  Sum_probs=37.1

Q ss_pred             cCcccceeeccCCC---CCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          130 SCHDLQDLDLSKSF---KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       130 ~~~~L~~L~l~~~~---~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ...+|+.|+|.++.   -|.|.+  ...++++.|+.|.+.|. ++..-.=.++ .++++|++|++.+-.
T Consensus       363 ~lssL~~LdLr~N~ls~~IEDaa--~~f~gl~~LrkL~l~gN-qlk~I~krAf-sgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIEDAA--VAFNGLPSLRKLRLTGN-QLKSIPKRAF-SGLEALEHLDLGDNA  427 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEecch--hhhccchhhhheeecCc-eeeecchhhh-ccCcccceecCCCCc
Confidence            34677777777642   133322  22345788888888775 4433332333 378888888887754

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.20  E-value=0.0053  Score=48.59  Aligned_cols=87  Identities=16%  Similarity=0.181  Sum_probs=50.9

Q ss_pred             CCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCC----CCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHH
Q 028697          104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS----FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL  179 (205)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~----~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l  179 (205)
                      ..||+.|.+++.  .++=..........|.++.|+++-+    .+++++....   ..+.+++|+..+|...-......+
T Consensus       120 ~~nl~~lVLNgT--~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l  194 (418)
T KOG2982|consen  120 LKNLRVLVLNGT--GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKL  194 (418)
T ss_pred             ccceEEEEEcCC--CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhH
Confidence            346666666552  4443334444445555565555532    1223333222   235666777777765566667777


Q ss_pred             HhcCCCCCeEeccCCc
Q 028697          180 CGFCRKLKILNLCGCV  195 (205)
Q Consensus       180 ~~~~~~L~~L~l~~c~  195 (205)
                      .+.+|++..+-+..|+
T Consensus       195 ~r~Fpnv~sv~v~e~P  210 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEGP  210 (418)
T ss_pred             HhhcccchheeeecCc
Confidence            7888999999888887

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.13  E-value=0.017  Score=32.11  Aligned_cols=33  Identities=39%  Similarity=0.608  Sum_probs=14.2

Q ss_pred             ccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCC
Q 028697          133 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC  168 (205)
Q Consensus       133 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~  168 (205)
                      +|+.|+++++ .+++  +......+++|++|+++++
T Consensus         2 ~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC
Confidence            4555555554 3432  1121234555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.10  E-value=0.00072  Score=40.44  Aligned_cols=59  Identities=25%  Similarity=0.319  Sum_probs=30.0

Q ss_pred             CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCC
Q 028697          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC  168 (205)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~  168 (205)
                      |+|++|+++.+  .++.- -......+++|+.|+++++ .++.-.-. ....+++|++|+++++
T Consensus         1 p~L~~L~l~~n--~l~~i-~~~~f~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN--KLTEI-PPDSFSNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS--TESEE-CTTTTTTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC--CCCcc-CHHHHcCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCC
Confidence            45667777665  33311 1112234567777777764 33311111 1245677777777665

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=95.08  E-value=0.003  Score=54.20  Aligned_cols=86  Identities=20%  Similarity=0.245  Sum_probs=43.0

Q ss_pred             cCCCccEEEecCCC-CCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCC--CCCHHHHHHH
Q 028697          103 KLTKLQTLVLRQDK-PQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCT--SFSDHALAYL  179 (205)
Q Consensus       103 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~--~it~~~l~~l  179 (205)
                      .|++|+.|+++++. ..+....+.    .+.+|+.|+|+.+ .++.-.=. ....+++|++|++.+..  +....+....
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~----~L~~Le~LnLs~N-si~~l~e~-af~~lssL~~LdLr~N~ls~~IEDaa~~f  388 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFR----VLSQLEELNLSHN-SIDHLAEG-AFVGLSSLHKLDLRSNELSWCIEDAAVAF  388 (873)
T ss_pred             hcccceeEeccccccccCChhHHH----HHHHhhhhccccc-chHHHHhh-HHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence            55667777776641 111222222    2345667766654 33321111 12345678888876542  1112222333


Q ss_pred             HhcCCCCCeEeccCCc
Q 028697          180 CGFCRKLKILNLCGCV  195 (205)
Q Consensus       180 ~~~~~~L~~L~l~~c~  195 (205)
                      . +++.|+.|++.|-.
T Consensus       389 ~-gl~~LrkL~l~gNq  403 (873)
T KOG4194|consen  389 N-GLPSLRKLRLTGNQ  403 (873)
T ss_pred             c-cchhhhheeecCce
Confidence            3 57888888887653

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.99  E-value=0.021  Score=27.10  Aligned_cols=22  Identities=41%  Similarity=0.613  Sum_probs=10.4

Q ss_pred             cccceeeccCCCCCCHHHHHHHH
Q 028697          132 HDLQDLDLSKSFKLSDRSLYALA  154 (205)
Q Consensus       132 ~~L~~L~l~~~~~l~~~~~~~l~  154 (205)
                      ++|+.|+++++ .++++++..++
T Consensus         2 ~~L~~L~l~~n-~i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNN-QITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred             CCCCEEEccCC-cCCHHHHHHhC
Confidence            45555555554 35555555443

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.99  E-value=0.3  Score=38.50  Aligned_cols=115  Identities=20%  Similarity=0.177  Sum_probs=76.8

Q ss_pred             cCCCceEecCCCCC--CCHHHHHHHHhcCCCccEEEecCCCCCCCH-------HHHHHHHh-----cCcccceeeccCCC
Q 028697           78 CLGLTHLSLSWCKN--NMNNLVLSLAPKLTKLQTLVLRQDKPQLED-------NAVEAIAN-----SCHDLQDLDLSKSF  143 (205)
Q Consensus        78 ~~~l~~L~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-------~~l~~l~~-----~~~~L~~L~l~~~~  143 (205)
                      |+.+..+++|....  -..+.+..+..+..+|++|.+++|  ....       ..+.+++.     .-|.|+....+.+.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn--GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN--GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC--CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            67788888875431  123445567778888999999886  2221       22333332     23678888877652


Q ss_pred             --CCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH----hcCCCCCeEeccCCc
Q 028697          144 --KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC----GFCRKLKILNLCGCV  195 (205)
Q Consensus       144 --~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~----~~~~~L~~L~l~~c~  195 (205)
                        +-+........+.-.+|+.+.+..+ +|.++++..++    .+|.+|+.|++.+..
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence              2334445555555679999999775 89998877776    478999999998865

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.82  E-value=0.012  Score=45.33  Aligned_cols=89  Identities=27%  Similarity=0.407  Sum_probs=52.0

Q ss_pred             cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCH-HHHHHHHhcCCCCCEEeecCCC--CCCHHHHHHH
Q 028697          103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALAHGCPNLTRLNISGCT--SFSDHALAYL  179 (205)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~--~it~~~l~~l  179 (205)
                      ..|+|+.|.++.+..++ ...+..++..+|+|++|+++++ ++.+ ..+.. ....++|..|++..|.  ++++- =..+
T Consensus        63 ~Lp~LkkL~lsdn~~~~-~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dy-re~v  138 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRV-SGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDY-REKV  138 (260)
T ss_pred             CcchhhhhcccCCcccc-cccceehhhhCCceeEEeecCC-ccccccccch-hhhhcchhhhhcccCCccccccH-HHHH
Confidence            55688888887742223 3456666677788888888875 5553 22222 2346678888887763  22221 1223


Q ss_pred             HhcCCCCCeEeccCCc
Q 028697          180 CGFCRKLKILNLCGCV  195 (205)
Q Consensus       180 ~~~~~~L~~L~l~~c~  195 (205)
                      ..-.|+|++|+-..+.
T Consensus       139 f~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  139 FLLLPSLKYLDGCDVD  154 (260)
T ss_pred             HHHhhhhccccccccC
Confidence            3346777777665543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.78  E-value=0.02  Score=46.01  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=34.3

Q ss_pred             CCCCCCCC----HHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697           40 ITEWKDIP----MELLLRILSLVDEPTVIVASGVCSGWRDAI   77 (205)
Q Consensus        40 ~~~~~~Lp----~e~l~~If~~l~~~~l~~~~~vck~w~~~~   77 (205)
                      ...++.||    +++-+.||+||+-.+++.+-.|||+|+.+.
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l  113 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVL  113 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHh
Confidence            34567899    999999999999999999999999999973

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.73  E-value=0.013  Score=45.21  Aligned_cols=89  Identities=29%  Similarity=0.413  Sum_probs=60.4

Q ss_pred             HHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCH-HHHHH
Q 028697          100 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD-HALAY  178 (205)
Q Consensus       100 l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~-~~l~~  178 (205)
                      +...+.+|+.+++.++  .++  .+..+. .+|+|+.|.++.++.-...++..++..+|+|+++.++++ ++.+ ..+..
T Consensus        38 l~d~~~~le~ls~~n~--glt--t~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p  111 (260)
T KOG2739|consen   38 LTDEFVELELLSVINV--GLT--TLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP  111 (260)
T ss_pred             ccccccchhhhhhhcc--cee--ecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch
Confidence            3344556666666554  222  233332 367999999987533445567777888899999999986 7763 44444


Q ss_pred             HHhcCCCCCeEeccCCc
Q 028697          179 LCGFCRKLKILNLCGCV  195 (205)
Q Consensus       179 l~~~~~~L~~L~l~~c~  195 (205)
                      +. .+++|.+|++..|+
T Consensus       112 l~-~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  112 LK-ELENLKSLDLFNCS  127 (260)
T ss_pred             hh-hhcchhhhhcccCC
Confidence            44 67889999999997

>PF13013 F-box-like_2: F-box-like domain

Probab=94.53  E-value=0.049  Score=36.64  Aligned_cols=34  Identities=26%  Similarity=0.464  Sum_probs=29.6

Q ss_pred             CCCCCCHHHHHHHHhcCChhHHHHhhccch--hhHH
Q 028697           42 EWKDIPMELLLRILSLVDEPTVIVASGVCS--GWRD   75 (205)
Q Consensus        42 ~~~~Lp~e~l~~If~~l~~~~l~~~~~vck--~w~~   75 (205)
                      .+.+||+|++..||.+.+..++......|+  +|+.
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r   56 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWR   56 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999988888888  4443

>PLN03150 hypothetical protein; Provisional

Probab=94.41  E-value=0.043  Score=48.48  Aligned_cols=83  Identities=24%  Similarity=0.242  Sum_probs=55.2

Q ss_pred             CccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCC
Q 028697          106 KLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK  185 (205)
Q Consensus       106 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~  185 (205)
                      .++.|+++.+  .+....-..+. .+++|+.|+++++ .++.. +......+++|+.|+++++ .++...-..+. .+++
T Consensus       419 ~v~~L~L~~n--~L~g~ip~~i~-~L~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~  491 (623)
T PLN03150        419 FIDGLGLDNQ--GLRGFIPNDIS-KLRHLQSINLSGN-SIRGN-IPPSLGSITSLEVLDLSYN-SFNGSIPESLG-QLTS  491 (623)
T ss_pred             EEEEEECCCC--CccccCCHHHh-CCCCCCEEECCCC-cccCc-CChHHhCCCCCCEEECCCC-CCCCCCchHHh-cCCC
Confidence            3677888775  44433333444 5789999999986 44321 1112346899999999887 56543333344 7899


Q ss_pred             CCeEeccCCc
Q 028697          186 LKILNLCGCV  195 (205)
Q Consensus       186 L~~L~l~~c~  195 (205)
                      |++|+++++.
T Consensus       492 L~~L~Ls~N~  501 (623)
T PLN03150        492 LRILNLNGNS  501 (623)
T ss_pred             CCEEECcCCc
Confidence            9999999875

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=93.92  E-value=0.037  Score=44.04  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=20.0

Q ss_pred             CCCCEEeecCCCCCCH-HHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~-~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ..|..|++.++ +|-. +.+..|. .+|-|+++.+.+.+
T Consensus       374 YSLvnLDl~~N-~Ie~ldeV~~IG-~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  374 YSLVNLDLSSN-QIEELDEVNHIG-NLPCLETLRLTGNP  410 (490)
T ss_pred             hhheecccccc-chhhHHHhcccc-cccHHHHHhhcCCC
Confidence            45666777664 3322 2233333 56777777777665

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=93.33  E-value=0.16  Score=25.13  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=14.3

Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGF  182 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~  182 (205)
                      ++|++|+++++ .+++++...+++.
T Consensus         2 ~~L~~LdL~~N-~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNN-KLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCC-CCCHHHHHHHHHH
Confidence            45666666554 6666666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=92.60  E-value=0.017  Score=51.01  Aligned_cols=103  Identities=27%  Similarity=0.255  Sum_probs=49.0

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHh-cCcccceeeccCCCCCCHHHHHHHHhc
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN-SCHDLQDLDLSKSFKLSDRSLYALAHG  156 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~l~~~~~~~l~~~  156 (205)
                      ++.+++|+|+..+. +.   ......|+.|++|++++++  +.  .+-.+.. .|+ |..|++.++.--+--++    .+
T Consensus       186 l~ale~LnLshNk~-~~---v~~Lr~l~~LkhLDlsyN~--L~--~vp~l~~~gc~-L~~L~lrnN~l~tL~gi----e~  252 (1096)
T KOG1859|consen  186 LPALESLNLSHNKF-TK---VDNLRRLPKLKHLDLSYNC--LR--HVPQLSMVGCK-LQLLNLRNNALTTLRGI----EN  252 (1096)
T ss_pred             HHHhhhhccchhhh-hh---hHHHHhcccccccccccch--hc--cccccchhhhh-heeeeecccHHHhhhhH----Hh
Confidence            34566666665432 21   1245566777777776641  11  0111111 233 66666666421122222    23


Q ss_pred             CCCCCEEeecCCCCCCH-HHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~-~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|+.|+++++ -+.+ ..+..+. .+..|+.|.+.|.+
T Consensus       253 LksL~~LDlsyN-ll~~hseL~pLw-sLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  253 LKSLYGLDLSYN-LLSEHSELEPLW-SLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhhhccchhHh-hhhcchhhhHHH-HHHHHHHHhhcCCc
Confidence            556777777664 3322 2222222 34556666666655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.33  E-value=0.07  Score=39.98  Aligned_cols=107  Identities=21%  Similarity=0.251  Sum_probs=63.3

Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  159 (205)
                      +...++++.....    ....+.+.++|..|.++.+  +++.- =..+.+..|+|+.|.+.++.-..-..+..++ .||.
T Consensus        43 ~~d~iDLtdNdl~----~l~~lp~l~rL~tLll~nN--rIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~  114 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR----KLDNLPHLPRLHTLLLNNN--RITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPK  114 (233)
T ss_pred             ccceecccccchh----hcccCCCccccceEEecCC--cceee-ccchhhhccccceEEecCcchhhhhhcchhc-cCCc
Confidence            4566666553211    1235567788888888875  45431 1123344678888888886322333344443 5889


Q ss_pred             CCEEeecCCCCCCHHHH--HHHHhcCCCCCeEeccCCc
Q 028697          160 LTRLNISGCTSFSDHAL--AYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       160 L~~L~l~~~~~it~~~l--~~l~~~~~~L~~L~l~~c~  195 (205)
                      |++|.+-+. .++...-  .++....|+|+.||+....
T Consensus       115 L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  115 LEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cceeeecCC-chhcccCceeEEEEecCcceEeehhhhh
Confidence            999988775 4443321  1223457888988887754

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.21  E-value=0.2  Score=37.64  Aligned_cols=81  Identities=23%  Similarity=0.309  Sum_probs=52.7

Q ss_pred             cCCCccEEEecCCCCCCCHHHHHHH--HhcCcccceeeccCCCCCC--HHHHHHHHhcCCCCCEEeecCCCCCCHHHHHH
Q 028697          103 KLTKLQTLVLRQDKPQLEDNAVEAI--ANSCHDLQDLDLSKSFKLS--DRSLYALAHGCPNLTRLNISGCTSFSDHALAY  178 (205)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~l~~l--~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~  178 (205)
                      ...+...++++.+       .+..+  ..+.++|+.|.++++ .|+  +..+..   .+|+|+.|.+.+..-.--..+..
T Consensus        40 ~~d~~d~iDLtdN-------dl~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~p  108 (233)
T KOG1644|consen   40 TLDQFDAIDLTDN-------DLRKLDNLPHLPRLHTLLLNNN-RITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDP  108 (233)
T ss_pred             cccccceeccccc-------chhhcccCCCccccceEEecCC-cceeeccchhh---hccccceEEecCcchhhhhhcch
Confidence            3456666666653       22222  246789999999986 555  333433   35899999998863223333556


Q ss_pred             HHhcCCCCCeEeccCCc
Q 028697          179 LCGFCRKLKILNLCGCV  195 (205)
Q Consensus       179 l~~~~~~L~~L~l~~c~  195 (205)
                      ++ .||+|++|.+-+-+
T Consensus       109 La-~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen  109 LA-SCPKLEYLTLLGNP  124 (233)
T ss_pred             hc-cCCccceeeecCCc
Confidence            66 79999999888765

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=90.51  E-value=0.47  Score=23.35  Aligned_cols=24  Identities=46%  Similarity=0.612  Sum_probs=14.9

Q ss_pred             cccceeeccCCCCCCHHHHHHHHhc
Q 028697          132 HDLQDLDLSKSFKLSDRSLYALAHG  156 (205)
Q Consensus       132 ~~L~~L~l~~~~~l~~~~~~~l~~~  156 (205)
                      ++|+.|+|+++ .+++++...+++.
T Consensus         2 ~~L~~LdL~~N-~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNN-KLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCC-CCCHHHHHHHHHH
Confidence            45666666665 6666666666543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=90.39  E-value=0.4  Score=43.44  Aligned_cols=11  Identities=36%  Similarity=0.634  Sum_probs=7.6

Q ss_pred             CCCCEEeecCC
Q 028697          158 PNLTRLNISGC  168 (205)
Q Consensus       158 ~~L~~L~l~~~  168 (205)
                      ++|++|+++++
T Consensus       302 ~~L~~LdLS~N  312 (788)
T PRK15387        302 PGLQELSVSDN  312 (788)
T ss_pred             cccceeECCCC
Confidence            56777777665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=89.74  E-value=0.35  Score=38.68  Aligned_cols=100  Identities=24%  Similarity=0.183  Sum_probs=57.2

Q ss_pred             CceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCC
Q 028697           81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL  160 (205)
Q Consensus        81 l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L  160 (205)
                      +..+|++...   ...+..-.+..|.++.|+++.+  .+.  .+..+ ...++|..|+++++.--.-+++.   ..+-|.
T Consensus       286 LtelDLS~N~---I~~iDESvKL~Pkir~L~lS~N--~i~--~v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh---~KLGNI  354 (490)
T KOG1259|consen  286 LTELDLSGNL---ITQIDESVKLAPKLRRLILSQN--RIR--TVQNL-AELPQLQLLDLSGNLLAECVGWH---LKLGNI  354 (490)
T ss_pred             hhhccccccc---hhhhhhhhhhccceeEEecccc--cee--eehhh-hhcccceEeecccchhHhhhhhH---hhhcCE
Confidence            5777777632   2223344456788889988875  332  12223 24688899998886322333432   235578


Q ss_pred             CEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          161 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       161 ~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|.++++ .+-+  +.-+. .+-+|..|++++..
T Consensus       355 KtL~La~N-~iE~--LSGL~-KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  355 KTLKLAQN-KIET--LSGLR-KLYSLVNLDLSSNQ  385 (490)
T ss_pred             eeeehhhh-hHhh--hhhhH-hhhhheeccccccc
Confidence            88888765 2211  11221 34567888887754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=89.62  E-value=0.084  Score=46.89  Aligned_cols=83  Identities=23%  Similarity=0.237  Sum_probs=48.4

Q ss_pred             HHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHH
Q 028697          100 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL  179 (205)
Q Consensus       100 l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l  179 (205)
                      -.+..+.+++|+++.+  ++++..  .+ +.|++|++|+|+++.--.-..+..  .+|. |+.|.+.++ .++.  +.-+
T Consensus       182 SLqll~ale~LnLshN--k~~~v~--~L-r~l~~LkhLDlsyN~L~~vp~l~~--~gc~-L~~L~lrnN-~l~t--L~gi  250 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHN--KFTKVD--NL-RRLPKLKHLDLSYNCLRHVPQLSM--VGCK-LQLLNLRNN-ALTT--LRGI  250 (1096)
T ss_pred             HHHHHHHhhhhccchh--hhhhhH--HH-Hhcccccccccccchhccccccch--hhhh-heeeeeccc-HHHh--hhhH
Confidence            3345577888888875  555433  33 457888888888752111112221  1244 788888765 3322  2222


Q ss_pred             HhcCCCCCeEeccCC
Q 028697          180 CGFCRKLKILNLCGC  194 (205)
Q Consensus       180 ~~~~~~L~~L~l~~c  194 (205)
                      . ++++|+.||+++.
T Consensus       251 e-~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  251 E-NLKSLYGLDLSYN  264 (1096)
T ss_pred             H-hhhhhhccchhHh
Confidence            2 5678888888874

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.22  E-value=0.11  Score=40.95  Aligned_cols=80  Identities=25%  Similarity=0.262  Sum_probs=57.6

Q ss_pred             CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCH-HHHHHHHhcC
Q 028697          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD-HALAYLCGFC  183 (205)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~-~~l~~l~~~~  183 (205)
                      .+.+.|++++|  .++|-   .|.+.++.|+.|.|+-+ +|+.  +.. ...|++|+.|.+..+ .|.+ ..+.++ .++
T Consensus        19 ~~vkKLNcwg~--~L~DI---sic~kMp~lEVLsLSvN-kIss--L~p-l~rCtrLkElYLRkN-~I~sldEL~YL-knl   87 (388)
T KOG2123|consen   19 ENVKKLNCWGC--GLDDI---SICEKMPLLEVLSLSVN-KISS--LAP-LQRCTRLKELYLRKN-CIESLDELEYL-KNL   87 (388)
T ss_pred             HHhhhhcccCC--CccHH---HHHHhcccceeEEeecc-cccc--chh-HHHHHHHHHHHHHhc-ccccHHHHHHH-hcC
Confidence            47888999997  78875   45577999999999864 4543  222 245899999999765 5544 334444 489


Q ss_pred             CCCCeEeccCCc
Q 028697          184 RKLKILNLCGCV  195 (205)
Q Consensus       184 ~~L~~L~l~~c~  195 (205)
                      |+|+.|.+...+
T Consensus        88 psLr~LWL~ENP   99 (388)
T KOG2123|consen   88 PSLRTLWLDENP   99 (388)
T ss_pred             chhhhHhhccCC
Confidence            999999988655

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=88.06  E-value=1.2  Score=38.36  Aligned_cols=90  Identities=19%  Similarity=0.268  Sum_probs=54.3

Q ss_pred             HHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCC-C-CHHHHHHHHhcCCCCCEEeecCCCCC----
Q 028697           98 LSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFK-L-SDRSLYALAHGCPNLTRLNISGCTSF----  171 (205)
Q Consensus        98 ~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~-l-~~~~~~~l~~~~~~L~~L~l~~~~~i----  171 (205)
                      .......|.+..++++++. -..-+.+..+++..|+|+.|+|+++.. + +...+..+  ....|++|.+.|++-.    
T Consensus       211 ~~~~~n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~  287 (585)
T KOG3763|consen  211 KHIEENFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFS  287 (585)
T ss_pred             HHhhcCCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchh
Confidence            4445567778888887752 334456677777778888888887521 1 22223222  2456788888776321    


Q ss_pred             -CHHHHHHHHhcCCCCCeEe
Q 028697          172 -SDHALAYLCGFCRKLKILN  190 (205)
Q Consensus       172 -t~~~l~~l~~~~~~L~~L~  190 (205)
                       ..+-+.+|.+.+|+|..||
T Consensus       288 ~~s~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  288 DRSEYVSAIRELFPKLLRLD  307 (585)
T ss_pred             hhHHHHHHHHHhcchheeec
Confidence             1344556666778887774

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=87.66  E-value=0.35  Score=43.82  Aligned_cols=11  Identities=36%  Similarity=0.555  Sum_probs=7.5

Q ss_pred             cccceeeccCC
Q 028697          132 HDLQDLDLSKS  142 (205)
Q Consensus       132 ~~L~~L~l~~~  142 (205)
                      ++|+.|+++++
T Consensus       302 ~~L~~LdLS~N  312 (788)
T PRK15387        302 PGLQELSVSDN  312 (788)
T ss_pred             cccceeECCCC
Confidence            56777777765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=86.99  E-value=0.11  Score=45.53  Aligned_cols=14  Identities=43%  Similarity=0.477  Sum_probs=8.2

Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      ..++|+.|++++..
T Consensus       243 ~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNK  256 (1255)
T ss_pred             hhhhhheeccCcCc
Confidence            34566666666643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=86.65  E-value=0.59  Score=43.09  Aligned_cols=43  Identities=26%  Similarity=0.276  Sum_probs=20.8

Q ss_pred             HHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCC
Q 028697          100 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLS  146 (205)
Q Consensus       100 l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~  146 (205)
                      ++...|.|+.|++++|. . .......|+. +-+|+.|+++.+ .++
T Consensus       566 ff~~m~~LrVLDLs~~~-~-l~~LP~~I~~-Li~LryL~L~~t-~I~  608 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNS-S-LSKLPSSIGE-LVHLRYLDLSDT-GIS  608 (889)
T ss_pred             HHhhCcceEEEECCCCC-c-cCcCChHHhh-hhhhhcccccCC-Ccc
Confidence            45566667777776541 1 1122233332 345666666553 443

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=86.05  E-value=1.4  Score=37.92  Aligned_cols=84  Identities=23%  Similarity=0.243  Sum_probs=59.8

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCH-HHHHHHHhcCcccceeeccCCCCCC-----HHHHHH
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLED-NAVEAIANSCHDLQDLDLSKSFKLS-----DRSLYA  152 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~l~-----~~~~~~  152 (205)
                      +.+..+.+++..-..-+.+..+....|+|..|+|+.+...+.. ..+..+  ....|++|-+.+++-++     .+.+.+
T Consensus       218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~yv~~  295 (585)
T KOG3763|consen  218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEYVSA  295 (585)
T ss_pred             cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHHHHHH
Confidence            4567777877665566778889999999999999985223332 223333  34679999999875443     456777


Q ss_pred             HHhcCCCCCEEe
Q 028697          153 LAHGCPNLTRLN  164 (205)
Q Consensus       153 l~~~~~~L~~L~  164 (205)
                      |.+.+|+|..|+
T Consensus       296 i~~~FPKL~~LD  307 (585)
T KOG3763|consen  296 IRELFPKLLRLD  307 (585)
T ss_pred             HHHhcchheeec
Confidence            888899998876

>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins

Probab=85.82  E-value=0.89  Score=29.79  Aligned_cols=26  Identities=19%  Similarity=0.448  Sum_probs=23.3

Q ss_pred             CCCCCCCCHHHHHHHHhcCChhHHHH
Q 028697           40 ITEWKDIPMELLLRILSLVDEPTVIV   65 (205)
Q Consensus        40 ~~~~~~Lp~e~l~~If~~l~~~~l~~   65 (205)
                      ...|..||.|+...|+++|+..|+..
T Consensus        69 ~~~w~~LP~EIk~~Il~~L~~~dL~~   94 (97)
T PF09372_consen   69 NNYWNILPIEIKYKILEYLSNKDLKK   94 (97)
T ss_pred             CCchhhCCHHHHHHHHHcCCHHHHHH
Confidence            37899999999999999999888754

The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=85.48  E-value=0.31  Score=41.67  Aligned_cols=88  Identities=26%  Similarity=0.371  Sum_probs=44.5

Q ss_pred             CCCccEEEecCCCCCCCHHHHHHHHhcC---cc-cceeeccCCCCCCHHHHHHHHhcCC----CCCEEeecCCCCCCHHH
Q 028697          104 LTKLQTLVLRQDKPQLEDNAVEAIANSC---HD-LQDLDLSKSFKLSDRSLYALAHGCP----NLTRLNISGCTSFSDHA  175 (205)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~---~~-L~~L~l~~~~~l~~~~~~~l~~~~~----~L~~L~l~~~~~it~~~  175 (205)
                      ..++++|.+..|  .++......+....   ++ +..+++.++ .+.|.++..+...++    .+++++++.| .+++.+
T Consensus       203 ~~~le~L~L~~~--~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~  278 (478)
T KOG4308|consen  203 LSSLETLKLSRC--GVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKG  278 (478)
T ss_pred             cccHHHHhhhhc--CcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcC-Cccccc
Confidence            345666666665  44444444333222   22 444555554 556665555554433    3366666665 555555


Q ss_pred             HHHHHh---cCCCCCeEeccCCc
Q 028697          176 LAYLCG---FCRKLKILNLCGCV  195 (205)
Q Consensus       176 l~~l~~---~~~~L~~L~l~~c~  195 (205)
                      ...+++   .|+.++++.+..-+
T Consensus       279 ~~~L~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  279 VRDLAEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             hHHHHHHHhhhHHHHHhhcccCc
Confidence            444442   45555555555544

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=85.00  E-value=0.75  Score=22.28  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=10.9

Q ss_pred             CCEEeecCCCCCCHHHHHHHHhcCC
Q 028697          160 LTRLNISGCTSFSDHALAYLCGFCR  184 (205)
Q Consensus       160 L~~L~l~~~~~it~~~l~~l~~~~~  184 (205)
                      |++|++.....-.+..++.+..+||
T Consensus         2 LKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    2 LKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CeEEEeeEEEECChhHHHHhhccCc
Confidence            4455554442223334555544443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=84.42  E-value=0.45  Score=41.31  Aligned_cols=39  Identities=28%  Similarity=0.505  Sum_probs=35.2

Q ss_pred             CCCCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697           39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI   77 (205)
Q Consensus        39 ~~~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~   77 (205)
                      ....+..||.|+..+||.||+.+++..+++||+.|+.+.
T Consensus       104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~  142 (537)
T KOG0274|consen  104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLL  142 (537)
T ss_pred             ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhh
Confidence            455678899999999999999999999999999999873

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=84.24  E-value=1.3  Score=40.89  Aligned_cols=105  Identities=19%  Similarity=0.102  Sum_probs=59.4

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      .+.|+.||++++....  .+......+-+|++|+++..  .+. ..-..+. .++.|.+|++.........  ..+...+
T Consensus       570 m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t--~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~--~~i~~~L  641 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDT--GIS-HLPSGLG-NLKKLIYLNLEVTGRLESI--PGILLEL  641 (889)
T ss_pred             CcceEEEECCCCCccC--cCChHHhhhhhhhcccccCC--Ccc-ccchHHH-HHHhhheeccccccccccc--cchhhhc
Confidence            4578899999754322  23344556678999999884  454 1222232 3567888888765322221  3334457


Q ss_pred             CCCCEEeecCCC-CCCHHHHHHHHhcCCCCCeEec
Q 028697          158 PNLTRLNISGCT-SFSDHALAYLCGFCRKLKILNL  191 (205)
Q Consensus       158 ~~L~~L~l~~~~-~it~~~l~~l~~~~~~L~~L~l  191 (205)
                      ++|++|.+.+.. ..+...+..+ ..+.+|+.+.+
T Consensus       642 ~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~  675 (889)
T KOG4658|consen  642 QSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSI  675 (889)
T ss_pred             ccccEEEeeccccccchhhHHhh-hcccchhhhee
Confidence            889999886543 3333333333 24444444444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=82.27  E-value=1.1  Score=19.26  Aligned_cols=12  Identities=25%  Similarity=0.360  Sum_probs=7.3

Q ss_pred             CCCCeEeccCCc
Q 028697          184 RKLKILNLCGCV  195 (205)
Q Consensus       184 ~~L~~L~l~~c~  195 (205)
                      ++|+.|++++|.
T Consensus         1 ~~L~~L~l~~n~   12 (17)
T PF13504_consen    1 PNLRTLDLSNNR   12 (17)
T ss_dssp             TT-SEEEETSS-
T ss_pred             CccCEEECCCCC
Confidence            467777777776

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
1fs2_A	272	Insights Into Scf Ubiquitin Ligases From The Struct		5e-09
1fqv_A	336	Insights Into Scf Ubiquitin Ligases From The Struct		3e-08
2p1m_B	594	Tir1-ask1 Complex Structure Length = 594		4e-04

>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 21/163 (12%)
Query: 43  WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAP 102
           W  +P ELLL I S +  P ++  SGVC  W                         SL  
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE------------------SLWQ 50
Query: 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTR 162
            L + +   +      +E + +  I + C  LQ+L L +  +LSD  +  LA    NL R
Sbjct: 51  TLDEFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL-EGLRLSDPIVNTLAKN-SNLVR 108
Query: 163 LNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQV 205
           LN+SGC+ FS+ AL  L   C +L  LNL  C    T+  +QV
Sbjct: 109 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQV 150

>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 77/183 (42%), Gaps = 23/183 (12%)
Query: 43  WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLS--- 99
           W  +P ELLL I S +  P ++  SGVC  W           +L     N++  V     
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL 68
Query: 100 -----------------LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS 142
                            LA   +  +   +      +E + +  I + C  LQ+L L + 
Sbjct: 69  SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL-EG 127
Query: 143 FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYA 202
            +LSD  +  LA    NL RLN+SGC+ FS+ AL  L   C +L  LNL  C    T+  
Sbjct: 128 LRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-FTEKH 185
Query: 203 LQV 205
           +QV
Sbjct: 186 VQV 188

>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 76  AICLGLTHLSLSWCKNNMNNLV--LSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHD 133
           ++C  LT L+LS+      +LV  L   PKL +L  L        +ED  +E +A++C D
Sbjct: 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL------DYIEDAGLEVLASTCKD 339
Query: 134 LQDLDL--SKSF------KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK 185
           L++L +  S+ F       L+++ L +++ GCP L  + +  C   ++ AL  +      
Sbjct: 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPN 398
Query: 186 LKILNLCGCVKAATDY 201
           +    LC     A DY
Sbjct: 399 MTRFRLCIIEPKAPDY 414

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-28
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-22
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-24
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-19
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-10
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	5e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	8e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  107 bits (269), Expect = 2e-28
 Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 22/176 (12%)

Query: 41  TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMN------ 94
             W  +P ELLL I S +  P ++  SGVC  W           +L     N++      
Sbjct: 7   VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGR 66

Query: 95  --------------NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLS 140
                          +   LA   +  +   +      +E + +  I + C  LQ+L L 
Sbjct: 67  LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126

Query: 141 KSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196
              +LSD  +  LA    NL RLN+SGC+ FS+ AL  L   C +L  LNL  C  
Sbjct: 127 -GLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 89.9 bits (223), Expect = 9e-22
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 78  CLGLTHLSLSWCKN-NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQD 136
           C  L  L+LSWC +    ++ +++A     +  L L   +  L+ + +  +   C +L  
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226

Query: 137 LDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196
           LDLS S  L +            L  L++S C       L  L      LK L + G V 
Sbjct: 227 LDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGIV- 283

Query: 197 AATDYALQV 205
              D  LQ+
Sbjct: 284 --PDGTLQL 290

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           C  L HL LS      N+       +L  LQ L L +    +    +  +      L+ L
Sbjct: 221 CPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRC-YDIIPETLLELGE-IPTLKTL 277

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
            +     + D +L  L    P+L ++N S  T+ +   +    
Sbjct: 278 QVFGI--VPDGTLQLLKEALPHL-QINCSHFTTIARPTIGNKK 317

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 97.7 bits (243), Expect = 6e-24
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 11/158 (6%)

Query: 47  PMELLLRILSLVDEPT-VIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLT 105
           P E+L  + S +         S VC  W +        + +  C       V+   PK+ 
Sbjct: 10  PEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVR 69

Query: 106 KL---------QTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHG 156
            +            ++           +EA+++S   L+++ L +   ++D  L  +A  
Sbjct: 70  SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKS 128

Query: 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
             N   L +S C  FS   LA +   CR LK L+L   
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 75.7 bits (186), Expect = 2e-16
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 78  CLGLTHLSLSWCK--NNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQ 135
           C  L  L L      +   + +       T L +L +     ++  +A+E +   C +L+
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214

Query: 136 DLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD----HALAYLCGFCRKLKILNL 191
            L L+++  L    L  L    P L  L   G T+         L+     C++L+ L+ 
Sbjct: 215 SLKLNRAVPLEK--LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 192 CGCV 195
               
Sbjct: 273 FWDA 276

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 73.8 bits (181), Expect = 1e-15
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 22/143 (15%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE-------DNAVEAIANS 130
           C  L  L +       +  +  LA     L+ L +   +P +        +  + +++  
Sbjct: 313 CPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370

Query: 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSF---------SDHALAYLCG 181
           C  L+ + L    ++++ +L  +A   PN+TR  +                D     +  
Sbjct: 371 CPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE 429

Query: 182 FCRKLKILNLCGCVKAATDYALQ 204
            C+ L+ L+L G +   TD   +
Sbjct: 430 HCKDLRRLSLSGLL---TDKVFE 449

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 73.8 bits (181), Expect = 1e-15
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 78  CLGLTHLSLSWCKNN---------MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIA 128
              +T   L   +           ++    ++      L+ L L      L D   E I 
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG---LLTDKVFEYIG 452

Query: 129 NSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKI 188
                ++ L ++ +   SD  ++ +  GC +L +L I  C  F D AL         ++ 
Sbjct: 453 TYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRS 510

Query: 189 LNLCGC 194
           L +  C
Sbjct: 511 LWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.2 bits (169), Expect = 4e-14
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 12/139 (8%)

Query: 64  IVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNA 123
            V   V SG   A+        LS   + +   + ++    ++L TL L      ++   
Sbjct: 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS--YATVQSYD 305

Query: 124 VEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNI--------SGCTSFSDHA 175
           +  +   C  LQ L +     + D  L  LA  C +L  L +            + ++  
Sbjct: 306 LVKLLCQCPKLQRLWVLD--YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363

Query: 176 LAYLCGFCRKLKILNLCGC 194
           L  +   C KL+ +     
Sbjct: 364 LVSVSMGCPKLESVLYFCR 382

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           C  L  L L+         + +L  +  +L+ L       ++  +    ++ +    ++L
Sbjct: 210 CPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267

Query: 138 -DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196
             LS  +      L A+   C  LT LN+S  T    + L  L   C KL+ L +   + 
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYI- 325

Query: 197 AATDYALQV 205
              D  L+V
Sbjct: 326 --EDAGLEV 332

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
              +  LS+++   + +  +  +      L+ L +R       D A+ A A+    ++ L
Sbjct: 455 AKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDC--PFGDKALLANASKLETMRSL 511

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGC 168
            +S    +S  +   L    P L    I   
Sbjct: 512 WMSSC-SVSFGACKLLGQKMPKLNVEVIDER 541

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 84.6 bits (209), Expect = 2e-19
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 78  CLGLTHLSLSWCKN-------NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANS 130
              L    L             ++N V SL     KL+       +  L D  +  I   
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILN 190
             +++ + L      SD  L   + GCPNL +L + GC  FS+ A+A        L+ L 
Sbjct: 462 SPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLW 519

Query: 191 LCGCVKAATDYAL 203
           + G   + T   L
Sbjct: 520 VQGYRASMTGQDL 532

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 70.0 bits (171), Expect = 2e-14
 Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 19/143 (13%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLR---------QDKPQLEDNAVEAIA 128
           C  L  L       +    +  LA    +L+ L +           ++  +    + A+A
Sbjct: 317 CPNLEVLETRNVIGD--RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374

Query: 129 NSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFS-------DHALAYLCG 181
             C +L+ + +  S  +++ SL ++     NL    +              D+ +  L  
Sbjct: 375 QGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433

Query: 182 FCRKLKILNLCGCVKAATDYALQ 204
            C+KL+           TD  L 
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLS 456

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 70.0 bits (171), Expect = 2e-14
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 3/128 (2%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQ-DKPQLEDNAVEAIANSCHDLQD 136
              L  L L  C     + +LS+     K++TL++ +    + +   +  +A     L+ 
Sbjct: 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196

Query: 137 LDLSKS--FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
           L+   +   K+S + L  +A  C +L  + +                   +    +L   
Sbjct: 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNED 256

Query: 195 VKAATDYA 202
           +     Y 
Sbjct: 257 IGMPEKYM 264

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 70.0 bits (171), Expect = 2e-14
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLS-LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQD 136
           C  L   +    +  + +L LS +      ++ ++L        D  +   +  C +LQ 
Sbjct: 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG--YVGESDEGLMEFSRGCPNLQK 492

Query: 137 LDLSKSFKLSDRSLYALAHGCPNLTRLNISGCT-SFSDHALAYLCGFCRKLKILNLCGCV 195
           L++      S+R++ A     P+L  L + G   S +   L  +      ++++      
Sbjct: 493 LEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVP 551

Query: 196 K 196
           +
Sbjct: 552 E 552

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 66.5 bits (162), Expect = 3e-13
 Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 14/155 (9%)

Query: 50  LLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQT 109
                 +L +     +   +    +    +    L          N +  L P   +++ 
Sbjct: 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297

Query: 110 LVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCT 169
           L L        ++    I   C +L+ L+      + DR L  LA  C  L RL I    
Sbjct: 298 LDLL-YALLETEDHCTLIQK-CPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGA 353

Query: 170 S----------FSDHALAYLCGFCRKLKILNLCGC 194
                       S   L  L   C++L+ + +   
Sbjct: 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.3 bits (159), Expect = 8e-13
 Identities = 20/153 (13%), Positives = 48/153 (31%), Gaps = 18/153 (11%)

Query: 43  WKDIPMELLLRILSLVDEP-TVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLA 101
                 +++ ++++ + +P     AS VC  W         H++++ C     +    L+
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPD---RLS 69

Query: 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLT 161
            +   L++L L+  KP+                 +L            +  +++    L 
Sbjct: 70  RRFPNLRSLKLKG-KPRAAM-------------FNLIPENWGGYVTPWVTEISNNLRQLK 115

Query: 162 RLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
            ++                     L+ L L  C
Sbjct: 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.8 bits (155), Expect = 3e-12
 Identities = 16/128 (12%), Positives = 36/128 (28%), Gaps = 10/128 (7%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           C  L  + +   +          A  L +     L +D    E         +    + L
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPE------KYMNLVFPRKL 272

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKA 197
                  +    +  L      + +L++      ++     +   C  L++L     +  
Sbjct: 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK-CPNLEVLETRNVI-- 329

Query: 198 ATDYALQV 205
             D  L+V
Sbjct: 330 -GDRGLEV 336

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.7 bits (152), Expect = 7e-12
 Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 24/141 (17%)

Query: 78  CLGLTHLSLSWCK--NNMNNLVLSLAPKLTKLQTLVLRQ-DKPQLEDNAVEAIANSCHDL 134
           C  +  L +            +  LA   T L+ L     +  ++    +E IA +C  L
Sbjct: 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222

Query: 135 QDLDLSKSFKLSDRSLYALAHGCPNLT---------------------RLNISGCTSFSD 173
             + +     L     +  A                            +L   G +    
Sbjct: 223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282

Query: 174 HALAYLCGFCRKLKILNLCGC 194
           + +  L  F  +++ L+L   
Sbjct: 283 NEMPILFPFAAQIRKLDLLYA 303

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.7 bits (147), Expect = 4e-11
 Identities = 12/110 (10%), Positives = 33/110 (30%), Gaps = 4/110 (3%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
              +  + L +   + +  ++  +     LQ L +R       + A+ A       L+ L
Sbjct: 462 SPNVRWMLLGYVGES-DEGLMEFSRGCPNLQKLEMRGC--CFSERAIAAAVTKLPSLRYL 518

Query: 138 DLSK-SFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKL 186
            +      ++ + L  +A    N+  +        +             +
Sbjct: 519 WVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHI 568

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 63.7 bits (155), Expect = 4e-13
 Identities = 13/105 (12%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCH---DL 134
              +  +  +     + ++       L  ++ + L      +ED  +E ++   +    +
Sbjct: 60  KYKIQAIDATDS--CIMSIGFDHMEGLQYVEKIRLC-KCHYIEDGCLERLSQLENLQKSM 116

Query: 135 QDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 179
            ++++     ++D+ + AL H   NL  L +S      +      
Sbjct: 117 LEMEIISCGNVTDKGIIALHH-FRNLKYLFLSDLPGVKEKEKIVQ 160

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 55.2 bits (133), Expect = 5e-10
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 8/111 (7%)

Query: 87  SWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLS 146
              + + N+L      K  K+Q +        +     + +      ++ + L K   + 
Sbjct: 44  QRWQKDYNHLPTGPLDKY-KIQAIDA--TDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIE 99

Query: 147 DRSLYALA---HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
           D  L  L+   +   ++  + I  C + +D  +  L    R LK L L   
Sbjct: 100 DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FRNLKYLFLSDL 149

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 50.2 bits (120), Expect = 4e-08
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 114 QDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD 173
           Q + Q + N +       + +Q +D + S  +     +    G   + ++ +  C    D
Sbjct: 43  QQRWQKDYNHLPTGPLDKYKIQAIDATDS-CIMSIG-FDHMEGLQYVEKIRLCKCHYIED 100

Query: 174 HALAYL---CGFCRKLKILNLCGCVKAATDYALQ 204
             L  L       + +  + +  C    TD  + 
Sbjct: 101 GCLERLSQLENLQKSMLEMEIISCGN-VTDKGII 133

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 18/117 (15%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLD 138
           +  L+++      N    +  P   L+ L+ L +      +  + +  ++     L  LD
Sbjct: 68  IKDLTIN------NIHATNYNPISGLSNLERLRIMGK--DVTSDKIPNLSG-LTSLTLLD 118

Query: 139 LSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGC 194
           +S S    D  L  +    P +  +++S   + +D   L  L     +LK LN+   
Sbjct: 119 ISHS-AHDDSILTKINT-LPKVNSIDLSYNGAITDIMPLKTL----PELKSLNIQFD 169

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 16/112 (14%)

Query: 81  LTHLSLSWCKNNM--NNLVLSLAP-----KLTKLQTLVLRQDKPQLEDNAVEAIANS--C 131
           L  L L     +   +  +    P     +   L+ L +     + ++  VE    S   
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD--AEEQNVVVEMFLESDIL 278

Query: 132 HDLQDLDLSKSFKLSDRSLYALAHGCP---NLTRLNISGCTSFSDHALAYLC 180
             L+ +D+S    L+D     L        +L  +N+      SD     L 
Sbjct: 279 PQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQ 328

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 13/126 (10%)

Query: 80  GLTHLSLSWCK---NNMNNLVLSLAPKLTKLQTLVLRQDK---PQLEDNAVEAIANSCHD 133
            L  L +       + + +++ S  P L KL   V  +D      +         +   +
Sbjct: 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253

Query: 134 LQDLDLSKSFKLSDRSLYALAHG--CPNLTRLNISGCTSFSDH---ALAYLCGFCRKLKI 188
           L+ L +  + +  +  +         P L  ++IS     +D     L       + LK 
Sbjct: 254 LKWLGIVDA-EEQNVVVEMFLESDILPQLETMDIS-AGVLTDEGARLLLDHVDKIKHLKF 311

Query: 189 LNLCGC 194
           +N+   
Sbjct: 312 INMKYN 317

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDL 137
           +  L +   + + +     L P L + Q + L      L +   + I++       L +L
Sbjct: 5   IQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDC--GLTEARCKDISSALRVNPALAEL 61

Query: 138 DLSKSFKLSDRSLYALAHG----CPNLTRLNISGCTSFSDHALAYLC---GFCRKLKILN 190
           +L  + +L D  ++ +  G       + +L++  C   +      L         L+ L+
Sbjct: 62  NLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELH 119

Query: 191 LCGC 194
           L   
Sbjct: 120 LSDN 123

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 19/128 (14%)

Query: 81  LTHLSLSWCKNNMNNL-VLSLAPKL----TKLQTLVLRQDKPQLEDNAVEAIAN---SCH 132
           L  L+L    N + ++ V  +   L     K+Q L L+     L       +++   +  
Sbjct: 58  LAELNLRS--NELGDVGVHCVLQGLQTPSCKIQKLSLQNC--CLTGAGCGVLSSTLRTLP 113

Query: 133 DLQDLDLSKSFKLSDRSLYALAHG----CPNLTRLNISGC--TSFSDHALAYLCGFCRKL 186
            LQ+L LS +  L D  L  L  G       L +L +  C  ++ S   LA +       
Sbjct: 114 TLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 187 KILNLCGC 194
           K L +   
Sbjct: 173 KELTVSNN 180

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 15/126 (11%)

Query: 81  LTHLSLSWCK---NNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDL 134
           L  LSL+  +        L  +L     +L++L ++              ++       L
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS--CSFTAACCSHFSSVLAQNRFL 343

Query: 135 QDLDLSKSFKLSDRSLYALA----HGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKI 188
            +L +S + +L D  +  L          L  L ++ C  +  S  +LA        L+ 
Sbjct: 344 LELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 189 LNLCGC 194
           L+L   
Sbjct: 403 LDLSNN 408

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 15/126 (11%)

Query: 81  LTHLSLSWCKNN---MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDL 134
              L++S    N   +  L   L     +L+ L L      +  +    +     S   L
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE--SCGVTSDNCRDLCGIVASKASL 229

Query: 135 QDLDLSKSFKLSDRSLYALA----HGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKI 188
           ++L L  + KL D  +  L     H    L  L I  C  T+     L  +      LK 
Sbjct: 230 RELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 189 LNLCGC 194
           L+L G 
Sbjct: 289 LSLAGN 294

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 11/131 (8%)

Query: 41  TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSL 100
           +    +P+++ L ILS +    +         W +          + W        +L  
Sbjct: 3   STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE-----TVRDPILW-----RYFLLRD 52

Query: 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL 160
            P  + +    L   +   +    E    +  D   +       L  ++    A   P L
Sbjct: 53  LPSWSSVDWKSLPDLEILKKPI-SEVTDGAFFDYMAVYRMCCPYLIIQNEPRFAMFGPGL 111

Query: 161 TRLNISGCTSF 171
             LN S   S 
Sbjct: 112 EELNTSLVLSL 122

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 5/115 (4%)

Query: 79  LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIA-NSCHDLQDL 137
            GL  LS++  + +  N           L TL L  +    E   + A+       LQ L
Sbjct: 149 PGLKVLSIA--QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 138 DLSK-SFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNL 191
            L     +       ALA     L  L++S   S  D A A  C +  +L  LNL
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNL 260

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 18/130 (13%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQDLD 138
           +  L L   ++N   L   L  +  +L+ L          +  + +IAN    + L+ L+
Sbjct: 19  VKELVLDNSRSNEGKL-EGLTDEFEELEFL-------STINVGLTSIANLPKLNKLKKLE 70

Query: 139 LSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGC-V 195
           LS + ++S   L  LA  CPNLT LN+SG      S   +  L      LK L+L  C V
Sbjct: 71  LSDN-RVS-GGLEVLAEKCPNLTHLNLSGNKIKDLST--IEPLKK-LENLKSLDLFNCEV 125

Query: 196 KAATDYALQV 205
               DY   V
Sbjct: 126 TNLNDYRENV 135

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 13/119 (10%)

Query: 84  LSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIA----NSCHDLQDLDL 139
           L   +      N   S    L+ L+ L L     ++       +A    +  H L +++L
Sbjct: 52  LDHLFFHYEFQNQRFSAE-VLSSLRQLNLAGV--RMTPVKCTVVAAVLGSGRHALDEVNL 108

Query: 140 SKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF----CRKLKILNLCGC 194
           +   +L    L  L        +L +    S    A   L         ++  L L   
Sbjct: 109 AS-CQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN 165

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 17/116 (14%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANS---CHDLQDL 137
           L  L LS    +            T L+ L        L  N V  ++++      L+ L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYL-------DLSFNGVITMSSNFLGLEQLEHL 401

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNL 191
           D   S  L   S +++     NL  L+IS        +     L      L++L +
Sbjct: 402 DFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL----SSLEVLKM 452

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 12/116 (10%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLS 140
           L  L LS     +  +       L+ L TL+L  +   ++  A+ A +     LQ L   
Sbjct: 54  LQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGN--PIQSLALGAFSG-LSSLQKLVAV 108

Query: 141 KSF--KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
           ++    L +  +         L  LN++         L         L+ L+L   
Sbjct: 109 ETNLASLENFPI----GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 18/120 (15%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLS 140
           LT L LS   NN+N +       L +L+   L  +   ++     ++     +++ L+L 
Sbjct: 250 LTMLDLS--YNNLNVVGNDSFAWLPQLEYFFLEYN--NIQHLFSHSLHG-LFNVRYLNLK 304

Query: 141 KSFKLSDRSLYALA-------HGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNL 191
           +SF     SL +L             L  LN+          +    L      LK L+L
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL----INLKYLSL 360

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78
            W  +P ELLL I S +  P ++  SGVC  W     
Sbjct: 7  VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 23/132 (17%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAP------KLTKLQTLVLRQDKPQLEDNAVEAIANSC--- 131
           L  L L        + + S+        KL  L  + L  +   L +N +E +       
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423

Query: 132 --HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC-------TSFSDHALAYLCGF 182
               LQ L L+++ + S  S        P+L +L +          T         L   
Sbjct: 424 RVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL--- 479

Query: 183 CRKLKILNLCGC 194
              L++L L   
Sbjct: 480 -SHLQVLYLNHN 490

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 25/124 (20%)

Query: 79  LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSC----HDL 134
             + HL LS     + +L   +   L  L+ L        L  N +  IA+       +L
Sbjct: 266 SSVRHLDLSH--GFVFSLNSRVFETLKDLKVL-------NLAYNKINKIADEAFYGLDNL 316

Query: 135 QDLDLS--KSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILN 190
           Q L+LS     +L   + Y L    P +  +++         D    +L     KL+ L+
Sbjct: 317 QVLNLSYNLLGELYSSNFYGL----PKVAYIDLQKNHIAIIQDQTFKFL----EKLQTLD 368

Query: 191 LCGC 194
           L   
Sbjct: 369 LRDN 372

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 18/131 (13%)

Query: 80  GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQDL 137
            +  L L  CK+N    +  L  +   L+ L        L +  + +++N      L+ L
Sbjct: 25  AVRELVLDNCKSNDGK-IEGLTAEFVNLEFL-------SLINVGLISVSNLPKLPKLKKL 76

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGC- 194
           +LS   ++    L  LA   PNLT LN+SG      S   L  L      LK L+L  C 
Sbjct: 77  ELS-ENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDIST--LEPLKK-LECLKSLDLFNCE 131

Query: 195 VKAATDYALQV 205
           V    DY   V
Sbjct: 132 VTNLNDYRESV 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 16/117 (13%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPK----LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQD 136
           L++L L+       N + S +P     LT L+ LV  +   +L       I      L+ 
Sbjct: 82  LSNLILT------GNPIQSFSPGSFSGLTSLENLVAVET--KLASLESFPIGQ-LITLKK 132

Query: 137 LDLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNL 191
           L+++    +    L A      NL  +++S     + + + L +L    +    L++
Sbjct: 133 LNVA-HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQ 135
            L +THL LS   N +  L  +LA  L  L+ L       Q  DNA+E +    +   LQ
Sbjct: 462 LLLVTHLDLS--HNRLRALPPALA-ALRCLEVL-------QASDNALENVDGVANLPRLQ 511

Query: 136 DLDLSKSFKLSDRSLYALAHGCPNLTRLNISG 167
           +L L  + +L   +       CP L  LN+ G
Sbjct: 512 ELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG 542

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 23/123 (18%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQ 135
            +    L L         ++ +L   L +   +          DN +  +        L+
Sbjct: 18  AVRDRELDLR---GYKIPVIENLGATLDQFDAIDF-------SDNEIRKLDGFPLLRRLK 67

Query: 136 DLDLS--KSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNL 191
            L ++  +  ++ +     L    P+LT L ++        D  L  L    + L  L +
Sbjct: 68  TLLVNNNRICRIGE----GLDQALPDLTELILTNNSLVELGD--LDPLAS-LKSLTYLCI 120

Query: 192 CGC 194
              
Sbjct: 121 LRN 123

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 45  DIPMELLLRILSLVDEPTVI-VASGVCSGWRDAICLGLTHLSLSWCKNNMN 94
           ++P  LLLR+L+ +    ++     VC  W++ +      L L  C+    
Sbjct: 53  ELPEPLLLRVLAELPATELVQACRLVCLRWKELVD--GAPLWLLKCQQEGL 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.82
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.66
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.41
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.35
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.97
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.95
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.94
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.89
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.71
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.51
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.5
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.46
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.36
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.34
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.33
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.13
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.1
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.03
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.77
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.74
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.69
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.67
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.63
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.58
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.48
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.46
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.42
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.37
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.34
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.34
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.3
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.28
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.26
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.22
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.17
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.1
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.09
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.03
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.03
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	96.97
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	96.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	96.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	96.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	96.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	96.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	96.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	96.87
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	96.85
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.85
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	96.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	96.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	96.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.69
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	96.68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	96.67
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	96.67
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	96.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.64
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	96.63
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.61
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.58
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	96.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	96.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.26
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.01
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.01
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	95.98
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	95.88
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	95.82
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	95.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	95.27
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	94.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	94.61
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	94.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	93.68
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	93.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	93.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	92.99
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	90.27
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	89.54
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	85.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	84.93
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	82.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	81.3
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	80.46

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.2e-21  Score=156.51  Aligned_cols=153  Identities=29%  Similarity=0.442  Sum_probs=113.1

Q ss_pred             CCCCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhhc----------------------------------------
Q 028697           39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC----------------------------------------   78 (205)
Q Consensus        39 ~~~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~~----------------------------------------   78 (205)
                      +...|.+||+|++.+||+|++..++.+++.|||+|++++.                                        
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~   84 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ   84 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECS
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCccccc
Confidence            4578999999999999999999999999999999999842                                        


Q ss_pred             --------CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHH
Q 028697           79 --------LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSL  150 (205)
Q Consensus        79 --------~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~  150 (205)
                              .++++|+++++. ++...+......+++|++|++++|  .+++.....+.. +++|+.|++++|..+++.++
T Consensus        85 ~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~--~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l  160 (336)
T 2ast_B           85 PLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL--RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFAL  160 (336)
T ss_dssp             CCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC--BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHH
T ss_pred             cchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc--ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHH
Confidence                    134555555543 455556667777888888888876  577666666654 77777777777666777777


Q ss_pred             HHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCC-CCCeEeccCCc
Q 028697          151 YALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR-KLKILNLCGCV  195 (205)
Q Consensus       151 ~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~-~L~~L~l~~c~  195 (205)
                      ..+...+++|++|++++|..+++.++..+...++ +|++|++++|.
T Consensus       161 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          161 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            6666677777777777766677766666666677 77777777774

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.82  E-value=1.2e-19  Score=155.09  Aligned_cols=150  Identities=23%  Similarity=0.358  Sum_probs=104.6

Q ss_pred             CCCCCCCHHHHHHHHhcCC-hhHHHHhhccchhhHHhhcCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCC
Q 028697           41 TEWKDIPMELLLRILSLVD-EPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQL  119 (205)
Q Consensus        41 ~~~~~Lp~e~l~~If~~l~-~~~l~~~~~vck~w~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  119 (205)
                      ..|.+||+|++.+||+|++ .+++.++++|||+|+++..+...++++..+......   .+...+++|++|+++++ +.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~L~~L~L~~~-~~~   79 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPA---TVIRRFPKVRSVELKGK-PHF   79 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHH---HHHHHCTTCCEEEEECS-CGG
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHH---HHHhhCCCceEEeccCC-Cch
Confidence            5789999999999999998 999999999999999986555567777666544433   34556777777777764 222


Q ss_pred             -------------CHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCC
Q 028697          120 -------------EDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKL  186 (205)
Q Consensus       120 -------------~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L  186 (205)
                                   .+..+..+...+++|++|+++++ .+++..+..+...+++|++|++++|..+++.++..+...|++|
T Consensus        80 ~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L  158 (594)
T 2p1m_B           80 ADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL  158 (594)
T ss_dssp             GGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred             hhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence                         12345556666777777777776 5777777777666777777777777667777777777677777


Q ss_pred             CeEeccCCc
Q 028697          187 KILNLCGCV  195 (205)
Q Consensus       187 ~~L~l~~c~  195 (205)
                      ++|++++|.
T Consensus       159 ~~L~L~~~~  167 (594)
T 2p1m_B          159 KELDLRESD  167 (594)
T ss_dssp             CEEECTTCE
T ss_pred             CEEeCcCCc
Confidence            777777775

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=6.2e-18  Score=144.44  Aligned_cols=148  Identities=21%  Similarity=0.306  Sum_probs=83.1

Q ss_pred             CCCCHHHHHHHHhcC-ChhHHHHhhccchhhHHhhcCC-----------------------CceEecCCCCC--------
Q 028697           44 KDIPMELLLRILSLV-DEPTVIVASGVCSGWRDAICLG-----------------------LTHLSLSWCKN--------   91 (205)
Q Consensus        44 ~~Lp~e~l~~If~~l-~~~~l~~~~~vck~w~~~~~~~-----------------------l~~L~l~~~~~--------   91 (205)
                      .+||+|+|.+||+|+ +.+++.+++.|||+|+.+..+.                       +++|+++++..        
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~   93 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP   93 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence            479999999999999 8999999999999999885443                       44444433211        


Q ss_pred             -----CCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcc-cceeeccCCCCCCHHHHHHHHhcCCCCCEEee
Q 028697           92 -----NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHD-LQDLDLSKSFKLSDRSLYALAHGCPNLTRLNI  165 (205)
Q Consensus        92 -----~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l  165 (205)
                           .....+..+...+++|++|+++.+  .+++..+..++..+++ |++|++.+|..+++.++..+...|++|++|++
T Consensus        94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L  171 (592)
T 3ogk_B           94 ENWGGYVTPWVTEISNNLRQLKSVHFRRM--IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM  171 (592)
T ss_dssp             TTSCCBCHHHHHHHHHHCTTCCEEEEESC--BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEEC
T ss_pred             ccccccchHHHHHHHhhCCCCCeEEeecc--EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEEC
Confidence                 112233444444555555555543  4444444444443333 55555555444444455444444555555555


Q ss_pred             cCCCCCCHHH---HHHHHhcCCCCCeEeccCC
Q 028697          166 SGCTSFSDHA---LAYLCGFCRKLKILNLCGC  194 (205)
Q Consensus       166 ~~~~~it~~~---l~~l~~~~~~L~~L~l~~c  194 (205)
                      ++| .+++.+   +..+...+++|++|+++++
T Consensus       172 ~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n  202 (592)
T 3ogk_B          172 EES-SFSEKDGKWLHELAQHNTSLEVLNFYMT  202 (592)
T ss_dssp             TTC-EEECCCSHHHHHHHHHCCCCCEEECTTC
T ss_pred             ccc-cccCcchhHHHHHHhcCCCccEEEeecc
Confidence            544 232221   3334444555555555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.66  E-value=6.6e-17  Score=117.31  Aligned_cols=94  Identities=17%  Similarity=0.231  Sum_probs=76.1

Q ss_pred             CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhc---CCCCCEEeecCCCCCCHHHHHHHHh
Q 028697          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHG---CPNLTRLNISGCTSFSDHALAYLCG  181 (205)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~it~~~l~~l~~  181 (205)
                      .+|++|++++|  .++|..+..+. .|++|++|++++|..++|.++..+...   +++|++|++++|.+|||.++..++ 
T Consensus        61 ~~L~~LDLs~~--~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-  136 (176)
T 3e4g_A           61 YKIQAIDATDS--CIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-  136 (176)
T ss_dssp             CCEEEEEEESC--CCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred             ceEeEEeCcCC--CccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence            36888888887  58888888874 688888888888888888888888752   567888888888888888888887 


Q ss_pred             cCCCCCeEeccCCccccccccc
Q 028697          182 FCRKLKILNLCGCVKAATDYAL  203 (205)
Q Consensus       182 ~~~~L~~L~l~~c~~~~~d~~~  203 (205)
                      .|++|++|++++|++ +||.++
T Consensus       137 ~~~~L~~L~L~~c~~-Itd~gl  157 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPG-VKEKEK  157 (176)
T ss_dssp             GCTTCCEEEEESCTT-CCCHHH
T ss_pred             cCCCCCEEECCCCCC-CCchHH
Confidence            588888888888887 887653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.60  E-value=2.2e-15  Score=109.33  Aligned_cols=106  Identities=13%  Similarity=0.151  Sum_probs=92.6

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhc---CcccceeeccCCCCCCHHHHHHHHh
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANS---CHDLQDLDLSKSFKLSDRSLYALAH  155 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~l~~~~~~~l~~  155 (205)
                      ..|++|++++|. +++..+..+ ..|++|++|++++| ..++|..+..++..   +++|++|++++|..|||.++..+. 
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C-~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-  136 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKC-HYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-  136 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESC-TTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred             ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCC-CccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence            368999999987 888888766 58999999999998 68999999999873   679999999999999999999986 


Q ss_pred             cCCCCCEEeecCCCCCCHHH--HHHHHhcCCCCCe
Q 028697          156 GCPNLTRLNISGCTSFSDHA--LAYLCGFCRKLKI  188 (205)
Q Consensus       156 ~~~~L~~L~l~~~~~it~~~--l~~l~~~~~~L~~  188 (205)
                      .+++|++|++++|..+|+.+  ...+...+|+++.
T Consensus       137 ~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            59999999999999999976  4555567887653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.41  E-value=2.5e-12  Score=102.39  Aligned_cols=120  Identities=27%  Similarity=0.399  Sum_probs=77.4

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +++|++|+++++. +++.....+. .+++|++|++++| ..+++..+..+...+++|+.|++++|..+++.++..+...+
T Consensus       117 ~~~L~~L~L~~~~-l~~~~~~~l~-~~~~L~~L~L~~~-~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          117 CSKLQNLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGC-SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             BCCCSEEECTTCB-CCHHHHHHHT-TCTTCSEEECTTC-BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             CCCCCEEeCcCcc-cCHHHHHHHh-cCCCCCEEECCCC-CCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            5567777777653 4544443333 4677777777765 35666656665556777777777776567766666666667


Q ss_pred             C-CCCEEeecCCC-CCCHHHHHHHHhcCCCCCeEeccCCccccccc
Q 028697          158 P-NLTRLNISGCT-SFSDHALAYLCGFCRKLKILNLCGCVKAATDY  201 (205)
Q Consensus       158 ~-~L~~L~l~~~~-~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d~  201 (205)
                      + +|++|++++|. .+++..+..+...+++|++|++++|.. +++.
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~  238 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-LKND  238 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-CCGG
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc-CCHH
Confidence            7 77777777665 566666666666677777777777764 4444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.35  E-value=9e-12  Score=106.25  Aligned_cols=123  Identities=25%  Similarity=0.300  Sum_probs=95.2

Q ss_pred             cCCCceEecCC---CCCCCH----HHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHH
Q 028697           78 CLGLTHLSLSW---CKNNMN----NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSL  150 (205)
Q Consensus        78 ~~~l~~L~l~~---~~~~~~----~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~  150 (205)
                      +++|++|++++   +..+++    ..+..+...|++|++|+++.|...+++..+..+...+++|+.|+++++ .+++.++
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~  480 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGL  480 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHH
Confidence            45667777652   333432    456666677888888888665224788888888888889999999886 7888888


Q ss_pred             HHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccccccccc
Q 028697          151 YALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQ  204 (205)
Q Consensus       151 ~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d~~~~  204 (205)
                      ..+...+++|++|++++|. +++.++..++..+++|++|++++|.  +++.++.
T Consensus       481 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~--it~~~~~  531 (592)
T 3ogk_B          481 MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR--ASMTGQD  531 (592)
T ss_dssp             HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB--CCTTCTT
T ss_pred             HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc--CCHHHHH
Confidence            8888889999999999984 8999888888889999999999997  6777653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.33  E-value=7.4e-12  Score=106.77  Aligned_cols=118  Identities=21%  Similarity=0.258  Sum_probs=71.8

Q ss_pred             cCCCceEecC-----CCCCCC----HHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHH
Q 028697           78 CLGLTHLSLS-----WCKNNM----NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDR  148 (205)
Q Consensus        78 ~~~l~~L~l~-----~~~~~~----~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~  148 (205)
                      +++|++|+++     +|..++    +..+..+...|++|++|++++   .+++..+..++..+++|+.|++++| .+++.
T Consensus       396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~---~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~  471 (594)
T 2p1m_B          396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG---LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDL  471 (594)
T ss_dssp             CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS---SCCHHHHHHHHHHCTTCCEEEEESC-CSSHH
T ss_pred             CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC---cccHHHHHHHHHhchhccEeeccCC-CCcHH
Confidence            3455666665     344444    455555556666666666643   4566666666655666666666665 46666


Q ss_pred             HHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccccccc
Q 028697          149 SLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYA  202 (205)
Q Consensus       149 ~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d~~  202 (205)
                      ++..+...+++|++|++++| .+++.++..++..+++|++|++++|+  +++.+
T Consensus       472 ~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~  522 (594)
T 2p1m_B          472 GMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCS--VSFGA  522 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSC--CBHHH
T ss_pred             HHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCC--CCHHH
Confidence            66666666666777776666 44666666666666667777777665  34444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=1.7e-10  Score=93.59  Aligned_cols=94  Identities=22%  Similarity=0.202  Sum_probs=50.9

Q ss_pred             CCCccEEEecCCCCCCCHHHHHHHH---hcCcccceeeccCCCCCCHHHHHHHHh---cCCCCCEEeecCCCCCCHHHHH
Q 028697          104 LTKLQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISGCTSFSDHALA  177 (205)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~it~~~l~  177 (205)
                      +++|++|++++|  .+++.....++   ..+++|+.|+++++ .+++.++..++.   .+++|++|++++| .+++.+..
T Consensus       154 ~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~  229 (372)
T 3un9_A          154 QCQITTLRLSNN--PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL  229 (372)
T ss_dssp             TCCCCEEECCSS--CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred             CCccceeeCCCC--CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence            455666666554  45554444432   23455666666654 455555544432   3445666666655 56665555


Q ss_pred             HHHh---cCCCCCeEeccCCccccccccc
Q 028697          178 YLCG---FCRKLKILNLCGCVKAATDYAL  203 (205)
Q Consensus       178 ~l~~---~~~~L~~L~l~~c~~~~~d~~~  203 (205)
                      .++.   .+++|++|+++++.  +++.++
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~--i~~~g~  256 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNE--LSSEGR  256 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSS--CCHHHH
T ss_pred             HHHHHHHhCCCCCEEeccCCC--CCHHHH
Confidence            5543   34666666666665  455543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.12  E-value=3e-09  Score=77.87  Aligned_cols=119  Identities=14%  Similarity=0.083  Sum_probs=96.4

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHH---hcCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHH
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLA---PKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLY  151 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~  151 (205)
                      ...+++|+++++..+.++....++   ...++|++|+++++  .+++.....++.   ..++|+.|+++++ .++++++.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n--~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~  111 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT--RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL  111 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS--CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC--CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHH
Confidence            567899999987467877665554   45789999999997  899988776654   4578999999997 89999988


Q ss_pred             HHHhc---CCCCCEEee--cCCCCCCHHHHHHHHh---cCCCCCeEeccCCcccccccc
Q 028697          152 ALAHG---CPNLTRLNI--SGCTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYA  202 (205)
Q Consensus       152 ~l~~~---~~~L~~L~l--~~~~~it~~~l~~l~~---~~~~L~~L~l~~c~~~~~d~~  202 (205)
                      .++..   .+.|++|++  +++ .+++++...++.   .++.|++|+++++.  +++.+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~--i~~~~  167 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ--QGPRL  167 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS--HHHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC--CChHH
Confidence            88754   568999999  665 999999777664   56899999999987  66654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.06  E-value=1.4e-09  Score=88.11  Aligned_cols=118  Identities=23%  Similarity=0.287  Sum_probs=98.4

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHh----cCcccceeeccCCCCCCHHHHHHHH
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN----SCHDLQDLDLSKSFKLSDRSLYALA  154 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~  154 (205)
                      ..+++|+++++. +++..+..+...+++|++|++++|  .+++.....++.    .+++|+.|++++| .+++.++..++
T Consensus       101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n--~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~  176 (372)
T 3un9_A          101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN--SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLM  176 (372)
T ss_dssp             SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS--CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHH
T ss_pred             CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC--CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHH
Confidence            589999999875 788888888888889999999997  899888777754    3578999999998 79988877765


Q ss_pred             ---hcCCCCCEEeecCCCCCCHHHHHHHH---hcCCCCCeEeccCCccccccccc
Q 028697          155 ---HGCPNLTRLNISGCTSFSDHALAYLC---GFCRKLKILNLCGCVKAATDYAL  203 (205)
Q Consensus       155 ---~~~~~L~~L~l~~~~~it~~~l~~l~---~~~~~L~~L~l~~c~~~~~d~~~  203 (205)
                         ..+++|++|+++++ .+++.++..++   ..+++|++|++++|.  ++|.+.
T Consensus       177 ~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~--i~~~g~  228 (372)
T 3un9_A          177 EGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG--AGDTAA  228 (372)
T ss_dssp             HHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC--CCHHHH
T ss_pred             HHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC--CCHHHH
Confidence               45789999999987 79999887776   457899999999997  677653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.97  E-value=1.1e-08  Score=83.00  Aligned_cols=89  Identities=25%  Similarity=0.334  Sum_probs=36.4

Q ss_pred             cCCCccEEEecCCCCCCCHHHHHHHHh----cCcccceeeccCCCCCCHHHHHHHH---hcCCCCCEEeecCCCCCCHHH
Q 028697          103 KLTKLQTLVLRQDKPQLEDNAVEAIAN----SCHDLQDLDLSKSFKLSDRSLYALA---HGCPNLTRLNISGCTSFSDHA  175 (205)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~it~~~  175 (205)
                      .+++|++|++++|  .+++..+..+..    .+++|+.|+++++ .+++.+...+.   ..+++|++|++++| .+++.+
T Consensus       185 ~~~~L~~L~L~~n--~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~  260 (386)
T 2ca6_A          185 SHRLLHTVKMVQN--GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARG  260 (386)
T ss_dssp             HCTTCCEEECCSS--CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHH
T ss_pred             hCCCcCEEECcCC--CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhh
Confidence            4444555555443  444433333222    3344444444443 34433332222   23344444444443 344443


Q ss_pred             HHHHHhc-----CCCCCeEeccCCc
Q 028697          176 LAYLCGF-----CRKLKILNLCGCV  195 (205)
Q Consensus       176 l~~l~~~-----~~~L~~L~l~~c~  195 (205)
                      ...++..     +++|++|++++|.
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCc
Confidence            3333321     3444444444443

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.95  E-value=7.5e-10  Score=64.19  Aligned_cols=40  Identities=35%  Similarity=0.643  Sum_probs=34.3

Q ss_pred             CCCCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhhc
Q 028697           39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC   78 (205)
Q Consensus        39 ~~~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~~   78 (205)
                      ....|.+||+|++.+||+|++..++.+++.|||+|+.++.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            3467899999999999999999999999999999999853

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.94  E-value=2.6e-08  Score=80.72  Aligned_cols=118  Identities=19%  Similarity=0.135  Sum_probs=90.7

Q ss_pred             cCCCceEecCCCCCCCHHHHHHH----HhcCCCccEEEecCCCCCCCHHHHHHHH---hcCcccceeeccCCCCCCHHHH
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSL----APKLTKLQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKSFKLSDRSL  150 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~l~~~~~  150 (205)
                      +..|++|+++++. +++..+..+    ...+++|+.|+++++  .+++.....+.   ..+++|+.|+++++ .+++.+.
T Consensus       186 ~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~  261 (386)
T 2ca6_A          186 HRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGA  261 (386)
T ss_dssp             CTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHH
T ss_pred             CCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhH
Confidence            4578899998864 666554443    448899999999997  78765554443   46789999999998 7999887


Q ss_pred             HHHHhc-----CCCCCEEeecCCCCCCHHHHHHHH----hcCCCCCeEeccCCcccccccc
Q 028697          151 YALAHG-----CPNLTRLNISGCTSFSDHALAYLC----GFCRKLKILNLCGCVKAATDYA  202 (205)
Q Consensus       151 ~~l~~~-----~~~L~~L~l~~~~~it~~~l~~l~----~~~~~L~~L~l~~c~~~~~d~~  202 (205)
                      ..+...     +++|++|++++| .+++.++..+.    ..+++|++|++++|.  +++.+
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~--l~~~~  319 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR--FSEED  319 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB--SCTTS
T ss_pred             HHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc--CCcch
Confidence            776653     799999999997 89997555554    458999999999997  45443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.93  E-value=1.7e-08  Score=73.86  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=86.4

Q ss_pred             HHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHHHHHh---cCCCCCEEeecC
Q 028697           94 NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISG  167 (205)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~  167 (205)
                      .+.+..+...+++|++|+++.+ ..+++.....++.   .+++|+.|+++++ .+++++...++.   ..+.|++|++++
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n-~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~  102 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNI-MNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES  102 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTC-TTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCCCEEEecCC-CCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence            4567778889999999999985 3788888777765   4578999999997 899999877654   457999999998


Q ss_pred             CCCCCHHHHHHHHh---cCCCCCeEec--cCCccccccccc
Q 028697          168 CTSFSDHALAYLCG---FCRKLKILNL--CGCVKAATDYAL  203 (205)
Q Consensus       168 ~~~it~~~l~~l~~---~~~~L~~L~l--~~c~~~~~d~~~  203 (205)
                      + .+++.++..++.   .++.|++|++  +++.  ++|.+.
T Consensus       103 N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~--i~~~g~  140 (185)
T 1io0_A          103 N-FISGSGILALVEALQSNTSLIELRIDNQSQP--LGNNVE  140 (185)
T ss_dssp             S-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC--CCHHHH
T ss_pred             C-cCCHHHHHHHHHHHHhCCCceEEEecCCCCC--CCHHHH
Confidence            7 999999888875   4678999999  6665  788764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.89  E-value=9.8e-09  Score=84.85  Aligned_cols=118  Identities=23%  Similarity=0.252  Sum_probs=91.9

Q ss_pred             cCCCceEecCCCCCCCHH---HHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCc----ccceeeccCCCCCCHHHH
Q 028697           78 CLGLTHLSLSWCKNNMNN---LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCH----DLQDLDLSKSFKLSDRSL  150 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~----~L~~L~l~~~~~l~~~~~  150 (205)
                      ++++++|++++|. +++.   .+......+++|++|+++++  .+++..+..+...++    +|++|+++++ .+++.++
T Consensus        27 ~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~  102 (461)
T 1z7x_W           27 LQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN--ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC  102 (461)
T ss_dssp             HTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC--CCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred             cCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC--cCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHH
Confidence            6788999999876 5554   34456667899999999986  788888888887776    6999999997 7887554


Q ss_pred             HHH---HhcCCCCCEEeecCCCCCCHHHHHHHHhc----CCCCCeEeccCCcccccccc
Q 028697          151 YAL---AHGCPNLTRLNISGCTSFSDHALAYLCGF----CRKLKILNLCGCVKAATDYA  202 (205)
Q Consensus       151 ~~l---~~~~~~L~~L~l~~~~~it~~~l~~l~~~----~~~L~~L~l~~c~~~~~d~~  202 (205)
                      ..+   ...+++|++|+++++ .+++.++..+...    .++|++|++++|.  +++.+
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~  158 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS--LSAAS  158 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC--CBGGG
T ss_pred             HHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC--CCHHH
Confidence            443   356789999999887 6998888887764    4579999999996  56644

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.88  E-value=3.5e-08  Score=81.48  Aligned_cols=152  Identities=20%  Similarity=0.189  Sum_probs=105.4

Q ss_pred             CCCCHHHHHHHHhcCC-hh--HHHHhhccchhhHHh-----hcCCCceEecCCCCCCCHHHHHHHHhcCC----CccEEE
Q 028697           44 KDIPMELLLRILSLVD-EP--TVIVASGVCSGWRDA-----ICLGLTHLSLSWCKNNMNNLVLSLAPKLT----KLQTLV  111 (205)
Q Consensus        44 ~~Lp~e~l~~If~~l~-~~--~l~~~~~vck~w~~~-----~~~~l~~L~l~~~~~~~~~~~~~l~~~~~----~L~~L~  111 (205)
                      ..+.++.+..+|..++ .+  ++..+......+..+     .++.+++|+++++. +++.....+...++    +|++|+
T Consensus        13 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~   91 (461)
T 1z7x_W           13 EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLS   91 (461)
T ss_dssp             CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred             cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEE
Confidence            3466666666665442 11  211222222222222     15789999999854 67767777777776    799999


Q ss_pred             ecCCCCCCCHHHHH---HHHhcCcccceeeccCCCCCCHHHHHHHHhc----CCCCCEEeecCCCCCCHHHHHHHH---h
Q 028697          112 LRQDKPQLEDNAVE---AIANSCHDLQDLDLSKSFKLSDRSLYALAHG----CPNLTRLNISGCTSFSDHALAYLC---G  181 (205)
Q Consensus       112 l~~~~~~~~~~~l~---~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~it~~~l~~l~---~  181 (205)
                      +++|  .+++..+.   .....+++|+.|+++++ .+++.++..+...    .++|++|++++| .+++.+...+.   .
T Consensus        92 L~~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~  167 (461)
T 1z7x_W           92 LQNC--CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLR  167 (461)
T ss_dssp             CTTS--CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHH
T ss_pred             ccCC--CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHh
Confidence            9997  77764433   33356789999999997 6988888877654    457999999998 88876654444   4


Q ss_pred             cCCCCCeEeccCCcccccccc
Q 028697          182 FCRKLKILNLCGCVKAATDYA  202 (205)
Q Consensus       182 ~~~~L~~L~l~~c~~~~~d~~  202 (205)
                      .+++|++|+++++.  +++.+
T Consensus       168 ~~~~L~~L~L~~n~--i~~~~  186 (461)
T 1z7x_W          168 AKPDFKELTVSNND--INEAG  186 (461)
T ss_dssp             HCTTCCEEECCSSB--CHHHH
T ss_pred             hCCCCCEEECcCCC--cchHH
Confidence            68999999999987  56654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.71  E-value=2.5e-08  Score=80.51  Aligned_cols=120  Identities=18%  Similarity=0.182  Sum_probs=79.9

Q ss_pred             CCceEecCCCCCCCHHHHHHHHh-cCCCccEEEecCCCCC-CCH---HHHHHHH--hcCcccceeeccCCCCCCHHHHHH
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAP-KLTKLQTLVLRQDKPQ-LED---NAVEAIA--NSCHDLQDLDLSKSFKLSDRSLYA  152 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~~-~~~---~~l~~l~--~~~~~L~~L~l~~~~~l~~~~~~~  152 (205)
                      +|++|++..+ .++.+.+..+.. .+|+|++|+|+.+... ..+   ..+..+.  ..+|+|+.|.+.+| .+++++...
T Consensus       194 ~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~  271 (362)
T 2ra8_A          194 NLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEM  271 (362)
T ss_dssp             TCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHH
T ss_pred             CCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHH
Confidence            4555555443 255666666654 6888999888531000 011   1122211  24788999999876 677776666


Q ss_pred             HHh--cCCCCCEEeecCCCCCCHHHHHHHHh---cCCCCCeEeccCCcccccccccc
Q 028697          153 LAH--GCPNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYALQ  204 (205)
Q Consensus       153 l~~--~~~~L~~L~l~~~~~it~~~l~~l~~---~~~~L~~L~l~~c~~~~~d~~~~  204 (205)
                      +..  .+|+|++|+++.+ .+++.+...+..   .+++|++|++++|.  ++|++++
T Consensus       272 la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~--i~d~~~~  325 (362)
T 2ra8_A          272 FLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY--LSDEMKK  325 (362)
T ss_dssp             HHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB--CCHHHHH
T ss_pred             HHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc--CCHHHHH
Confidence            664  4689999999775 899998888874   47999999999886  7887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.63  E-value=4e-08  Score=79.04  Aligned_cols=116  Identities=18%  Similarity=0.183  Sum_probs=74.8

Q ss_pred             CCceEecCCCCCCC---HHHHHHHHhcC-CCccEEEecCCCCCCCHH---HHHHHHhcC-cccceeeccCCCCCCHHHHH
Q 028697           80 GLTHLSLSWCKNNM---NNLVLSLAPKL-TKLQTLVLRQDKPQLEDN---AVEAIANSC-HDLQDLDLSKSFKLSDRSLY  151 (205)
Q Consensus        80 ~l~~L~l~~~~~~~---~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~---~l~~l~~~~-~~L~~L~l~~~~~l~~~~~~  151 (205)
                      .+++|+++++. ++   ...+..+.... ++|++|+++++  .+++.   .+......+ ++|+.|+++++ .+++.+..
T Consensus        52 ~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~  127 (362)
T 3goz_A           52 SVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGN--FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSS  127 (362)
T ss_dssp             TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS--CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHH
T ss_pred             ceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCC--cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHH
Confidence            78888888764 33   33344444444 88999999886  45433   333333344 78999999887 56655554


Q ss_pred             HHHh---c-CCCCCEEeecCCCCCCHHHHHHHHh---cCC-CCCeEeccCCcccccccc
Q 028697          152 ALAH---G-CPNLTRLNISGCTSFSDHALAYLCG---FCR-KLKILNLCGCVKAATDYA  202 (205)
Q Consensus       152 ~l~~---~-~~~L~~L~l~~~~~it~~~l~~l~~---~~~-~L~~L~l~~c~~~~~d~~  202 (205)
                      .+..   . +++|++|+++++ .+++.+...+..   ..+ +|++|++++|.  +++.+
T Consensus       128 ~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~--l~~~~  183 (362)
T 3goz_A          128 EFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNN--LASKN  183 (362)
T ss_dssp             HHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC--GGGSC
T ss_pred             HHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCC--Cchhh
Confidence            4433   3 468999999887 777655554432   344 89999999886  56544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.61  E-value=6.5e-08  Score=77.81  Aligned_cols=61  Identities=21%  Similarity=0.293  Sum_probs=28.0

Q ss_pred             ccceeeccCCCCCCHHH---HHHHHhcC-CCCCEEeecCCCCCCHHHHHHHHh----cCCCCCeEeccCCc
Q 028697          133 DLQDLDLSKSFKLSDRS---LYALAHGC-PNLTRLNISGCTSFSDHALAYLCG----FCRKLKILNLCGCV  195 (205)
Q Consensus       133 ~L~~L~l~~~~~l~~~~---~~~l~~~~-~~L~~L~l~~~~~it~~~l~~l~~----~~~~L~~L~l~~c~  195 (205)
                      +|+.|+++++ .+++.+   +......+ ++|++|+++++ .+++.+...+..    .+++|++|+++++.
T Consensus       168 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          168 NVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             cccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence            5555555554 333222   22222333 25666666554 455433333322    23456666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.57  E-value=1.5e-08  Score=71.09  Aligned_cols=108  Identities=27%  Similarity=0.350  Sum_probs=61.4

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      .++++|+++++. +++..+......+++|+.|+++++  .++..  ..+ ..+++|+.|+++++ .++.. +......++
T Consensus        17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~--~~~-~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~   88 (149)
T 2je0_A           17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV--GLTSI--ANL-PKLNKLKKLELSDN-RVSGG-LEVLAEKCP   88 (149)
T ss_dssp             GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS--CCCCC--TTC-CCCTTCCEEECCSS-CCCSC-THHHHHHCT
T ss_pred             ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC--CCCCc--hhh-hcCCCCCEEECCCC-cccch-HHHHhhhCC
Confidence            456777777654 221122233456677777777775  34332  222 34667777777775 44432 223334567


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .++..........+++|++|+++++.
T Consensus        89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            7777777776 56653322333467777777777775

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.51  E-value=1.1e-07  Score=66.68  Aligned_cols=107  Identities=24%  Similarity=0.307  Sum_probs=76.3

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ..++++|+++++.- +.-   .....+++|+.|+++++  .++.. +......+++|+.|+++++ .+++.........+
T Consensus        41 l~~L~~L~l~~n~l-~~~---~~~~~l~~L~~L~Ls~n--~i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l  112 (149)
T 2je0_A           41 FEELEFLSTINVGL-TSI---ANLPKLNKLKKLELSDN--RVSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKL  112 (149)
T ss_dssp             CTTCCEEECTTSCC-CCC---TTCCCCTTCCEEECCSS--CCCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGC
T ss_pred             cCCCcEEECcCCCC-CCc---hhhhcCCCCCEEECCCC--cccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhC
Confidence            46789999998753 321   44567899999999997  55542 3344456899999999997 67764332334678


Q ss_pred             CCCCEEeecCCCCCCHHHH--HHHHhcCCCCCeEeccC
Q 028697          158 PNLTRLNISGCTSFSDHAL--AYLCGFCRKLKILNLCG  193 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l--~~l~~~~~~L~~L~l~~  193 (205)
                      ++|++|+++++ .++...-  ......+++|++|++++
T Consensus       113 ~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          113 ENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999987 6655432  23445799999999864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.50  E-value=7e-07  Score=65.68  Aligned_cols=115  Identities=10%  Similarity=0.128  Sum_probs=89.6

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHh---cCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHH
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAP---KLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLY  151 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~  151 (205)
                      ...|++|++++...+.++....++.   .-..|+.|+|+.+  .+.|.....|+.   ....|++|+|+.+ .++++++.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n--~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~  116 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT--AISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA  116 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS--CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC--CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence            4578999998765688877665554   4468999999997  899988766654   4478999999997 89999999


Q ss_pred             HHHhcC---CCCCEEeecCCC--CCCHHHHHHHH---hcCCCCCeEeccCCc
Q 028697          152 ALAHGC---PNLTRLNISGCT--SFSDHALAYLC---GFCRKLKILNLCGCV  195 (205)
Q Consensus       152 ~l~~~~---~~L~~L~l~~~~--~it~~~l~~l~---~~~~~L~~L~l~~c~  195 (205)
                      .+++.+   +.|++|+++++.  .+++++...++   ..-+.|++|++..+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            988765   469999997642  57887765555   456889999998664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.46  E-value=3.6e-06  Score=61.86  Aligned_cols=106  Identities=13%  Similarity=0.198  Sum_probs=80.5

Q ss_pred             HHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhc---CcccceeeccCCCCCCHHHHHHHHh---cCCCCCEEeecC
Q 028697           94 NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANS---CHDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISG  167 (205)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~  167 (205)
                      ++.+..+...-+.|++|+++.+ ..+.+.....++..   ...|+.|+|+++ .++|.+...++.   .-+.|++|++++
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~n-n~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~  107 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNM-KRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES  107 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTC-CSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCccEEECCCC-CCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence            4567777777888999999863 27888877777653   357999999987 899888766654   346899999977


Q ss_pred             CCCCCHHHHHHHHhcC---CCCCeEeccCCcc-cccccc
Q 028697          168 CTSFSDHALAYLCGFC---RKLKILNLCGCVK-AATDYA  202 (205)
Q Consensus       168 ~~~it~~~l~~l~~~~---~~L~~L~l~~c~~-~~~d~~  202 (205)
                      + .|++.+..+++..+   +.|++|+++++.+ .++|++
T Consensus       108 N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A          108 N-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             S-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             C-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            6 89999999888644   6799999987654 466654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.36  E-value=1.7e-07  Score=68.92  Aligned_cols=106  Identities=18%  Similarity=0.200  Sum_probs=55.7

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ..++++|+++++. +..-   .....+++|++|+++++  .+++.....+. .+++|+.|+++++ .+++.....+ ..+
T Consensus        65 l~~L~~L~l~~n~-~~~~---~~l~~l~~L~~L~l~~n--~l~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~l-~~l  135 (197)
T 4ezg_A           65 AHNIKDLTINNIH-ATNY---NPISGLSNLERLRIMGK--DVTSDKIPNLS-GLTSLTLLDISHS-AHDDSILTKI-NTL  135 (197)
T ss_dssp             CTTCSEEEEESCC-CSCC---GGGTTCTTCCEEEEECT--TCBGGGSCCCT-TCTTCCEEECCSS-BCBGGGHHHH-TTC
T ss_pred             CCCCCEEEccCCC-CCcc---hhhhcCCCCCEEEeECC--ccCcccChhhc-CCCCCCEEEecCC-ccCcHhHHHH-hhC
Confidence            3456666666552 2211   12345666666666664  44433333332 3566777777665 5554333333 346


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|++++|..+++-.  . ...+++|++|++++|.
T Consensus       136 ~~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          136 PKVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFDG  170 (197)
T ss_dssp             SSCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTBC
T ss_pred             CCCCEEEccCCCCccccH--h-hcCCCCCCEEECCCCC
Confidence            677777776653244421  2 2356667777776665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.34  E-value=5.7e-08  Score=69.51  Aligned_cols=110  Identities=24%  Similarity=0.270  Sum_probs=67.8

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      .++|++|+++++. +..-   .....+++|+.|+++++  .++.. +..+...+++|+.|+++++ .+++.........+
T Consensus        48 l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N--~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l  119 (168)
T 2ell_A           48 FVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN--RIFGG-LDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKL  119 (168)
T ss_dssp             GGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC--CCCSC-CCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSC
T ss_pred             CCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC--cCchH-HHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcC
Confidence            3456778877764 2221   34456778888888876  44432 2333445788888888886 55542211223457


Q ss_pred             CCCCEEeecCCCCCCHHHH--HHHHhcCCCCCeEeccCCcc
Q 028697          158 PNLTRLNISGCTSFSDHAL--AYLCGFCRKLKILNLCGCVK  196 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l--~~l~~~~~~L~~L~l~~c~~  196 (205)
                      ++|++|+++++ .++....  ......+++|++|++++|..
T Consensus       120 ~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          120 ECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             SCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             CCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            88888888876 4543321  12445788888888888763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.33  E-value=2e-08  Score=71.87  Aligned_cols=109  Identities=28%  Similarity=0.328  Sum_probs=76.5

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ...+++|+++++. +++..+......+++|+.|+++++  .++..  ..+ ..+++|+.|+++++ .++.. +..+...+
T Consensus        23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n--~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l   94 (168)
T 2ell_A           23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINV--GLISV--SNL-PKLPKLKKLELSEN-RIFGG-LDMLAEKL   94 (168)
T ss_dssp             TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESS--CCCCC--SSC-CCCSSCCEEEEESC-CCCSC-CCHHHHHC
T ss_pred             cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCC--CCCCh--hhh-ccCCCCCEEECcCC-cCchH-HHHHHhhC
Confidence            3678999999875 332222334567899999999997  45532  222 45789999999997 55442 33344568


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .+++.........+++|++|+++++.
T Consensus        95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A           95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc
Confidence            99999999997 67663221223478999999999997

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.22  E-value=4.4e-07  Score=66.63  Aligned_cols=138  Identities=17%  Similarity=0.186  Sum_probs=91.9

Q ss_pred             CCCCCCHHHHHHHHhcC-ChhHHHHhhccchhhHHhhcCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCC
Q 028697           42 EWKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE  120 (205)
Q Consensus        42 ~~~~Lp~e~l~~If~~l-~~~~l~~~~~vck~w~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  120 (205)
                      ....+|+..+....... ....   ..-+..    .-...+++|+++++....-.    -...+++|++|+++++  .++
T Consensus        13 ~~~~~pd~~~~~~~~~~~~~~~---~~~i~~----~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~l~~n--~~~   79 (197)
T 4ezg_A           13 DNVNIPDSTFKAYLNGLLGQSS---TANITE----AQMNSLTYITLANINVTDLT----GIEYAHNIKDLTINNI--HAT   79 (197)
T ss_dssp             SBCCCCCHHHHHHHHHHHTCCT---TCCCBH----HHHHTCCEEEEESSCCSCCT----TGGGCTTCSEEEEESC--CCS
T ss_pred             ceeecCcHHHHHHHHHHhCCCc---cccCCh----hhcCCccEEeccCCCccChH----HHhcCCCCCEEEccCC--CCC
Confidence            45678888877655422 1100   000111    12457899999876432211    2567899999999997  444


Q ss_pred             HHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccccc
Q 028697          121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD  200 (205)
Q Consensus       121 ~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d  200 (205)
                      +-  ..+ ..+++|+.|+++++ .+++.....+ ..+++|++|+++++ .+++.....+. .+++|++|++++|.. +++
T Consensus        80 ~~--~~l-~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~-i~~  151 (197)
T 4ezg_A           80 NY--NPI-SGLSNLERLRIMGK-DVTSDKIPNL-SGLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGA-ITD  151 (197)
T ss_dssp             CC--GGG-TTCTTCCEEEEECT-TCBGGGSCCC-TTCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTB-CCC
T ss_pred             cc--hhh-hcCCCCCEEEeECC-ccCcccChhh-cCCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCC-ccc
Confidence            32  233 35899999999996 6765443333 35899999999987 88876666665 799999999999974 443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.13  E-value=3.1e-06  Score=67.25  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=62.5

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ...+++|+++++.-....   . ...+++|++|+++++  .+++  +.. ...+++|+.|+++++ .+++.   .....+
T Consensus       220 ~~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~l~~n--~l~~--~~~-~~~l~~L~~L~l~~n-~l~~~---~~~~~l  286 (347)
T 4fmz_A          220 MTRLNSLKIGNNKITDLS---P-LANLSQLTWLEIGTN--QISD--INA-VKDLTKLKMLNVGSN-QISDI---SVLNNL  286 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSS--CCCC--CGG-GTTCTTCCEEECCSS-CCCCC---GGGGGC
T ss_pred             CCcCCEEEccCCccCCCc---c-hhcCCCCCEEECCCC--ccCC--Chh-HhcCCCcCEEEccCC-ccCCC---hhhcCC
Confidence            346677777765422211   1 556777777777775  3332  112 235677777777776 44432   123457


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|++++| .++......+. .+++|++|++++|.
T Consensus       287 ~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          287 SQLNSLFLNNN-QLGNEDMEVIG-GLTNLTTLFLSQNH  322 (347)
T ss_dssp             TTCSEEECCSS-CCCGGGHHHHH-TCTTCSEEECCSSS
T ss_pred             CCCCEEECcCC-cCCCcChhHhh-ccccCCEEEccCCc
Confidence            77888888776 66665555554 57778888888776

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.10  E-value=2.2e-06  Score=66.80  Aligned_cols=38  Identities=24%  Similarity=0.590  Sum_probs=35.3

Q ss_pred             CCCCCCCCHHHHHHHHhcCChhHHH-HhhccchhhHHhh
Q 028697           40 ITEWKDIPMELLLRILSLVDEPTVI-VASGVCSGWRDAI   77 (205)
Q Consensus        40 ~~~~~~Lp~e~l~~If~~l~~~~l~-~~~~vck~w~~~~   77 (205)
                      ...+..||+|++..||.||+..+++ +++.|||+|+.++
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~   86 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV   86 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence            4578899999999999999999999 9999999999984

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.09  E-value=1e-06  Score=68.23  Aligned_cols=37  Identities=16%  Similarity=0.408  Sum_probs=34.4

Q ss_pred             CCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697           41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI   77 (205)
Q Consensus        41 ~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~   77 (205)
                      ..+.+||+|++.+||+||+.+++++++.|||+|+.++
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la   39 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETV   39 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHH
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            3578899999999999999999999999999999985

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.04  E-value=2.3e-05  Score=63.10  Aligned_cols=111  Identities=18%  Similarity=0.131  Sum_probs=81.6

Q ss_pred             cCCCceEecCCCCC-----CCHHHHHHHH--hcCCCccEEEecCCCCCCCHHHHHHHHh--cCcccceeeccCCCCCCHH
Q 028697           78 CLGLTHLSLSWCKN-----NMNNLVLSLA--PKLTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQDLDLSKSFKLSDR  148 (205)
Q Consensus        78 ~~~l~~L~l~~~~~-----~~~~~~~~l~--~~~~~L~~L~l~~~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~l~~~  148 (205)
                      +++|++|+|+....     .....+..+.  ..+|+|+.|.++.|  .+++.....++.  .+++|+.|+++.+ .+++.
T Consensus       218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~--~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~  294 (362)
T 2ra8_A          218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA--EEQNVVVEMFLESDILPQLETMDISAG-VLTDE  294 (362)
T ss_dssp             CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC--TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHH
T ss_pred             CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC--CCchHHHHHHHhCccCCCCCEEECCCC-CCChH
Confidence            68899999853211     1111122222  25899999999987  777776666664  5689999999876 89999


Q ss_pred             HHHHHHh---cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCC
Q 028697          149 SLYALAH---GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC  194 (205)
Q Consensus       149 ~~~~l~~---~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c  194 (205)
                      +...+..   .+++|+.|++++| .+++.++.++.+.+  ...++++.-
T Consensus       295 G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~  340 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDS  340 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSB
T ss_pred             HHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCC
Confidence            9888764   4799999999887 89999999999755  355677653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.03  E-value=5.6e-06  Score=65.72  Aligned_cols=103  Identities=23%  Similarity=0.242  Sum_probs=76.4

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ++.+++|+++++.-...    .....+++|++|+++++  .+++.  .. ...+++|+.|+++++ .+++.....+. .+
T Consensus       242 l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n--~l~~~--~~-~~~l~~L~~L~L~~n-~l~~~~~~~l~-~l  310 (347)
T 4fmz_A          242 LSQLTWLEIGTNQISDI----NAVKDLTKLKMLNVGSN--QISDI--SV-LNNLSQLNSLFLNNN-QLGNEDMEVIG-GL  310 (347)
T ss_dssp             CTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSS--CCCCC--GG-GGGCTTCSEEECCSS-CCCGGGHHHHH-TC
T ss_pred             CCCCCEEECCCCccCCC----hhHhcCCCcCEEEccCC--ccCCC--hh-hcCCCCCCEEECcCC-cCCCcChhHhh-cc
Confidence            56899999998753221    23567899999999997  45542  22 356899999999998 67665555443 58


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|++++| .++...  . ...+++|++|++++|+
T Consensus       311 ~~L~~L~L~~n-~l~~~~--~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          311 TNLTTLFLSQN-HITDIR--P-LASLSKMDSADFANQV  344 (347)
T ss_dssp             TTCSEEECCSS-SCCCCG--G-GGGCTTCSEESSSCC-
T ss_pred             ccCCEEEccCC-cccccc--C-hhhhhccceeehhhhc
Confidence            99999999998 566532  2 4479999999999987

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.85  E-value=2.4e-05  Score=61.43  Aligned_cols=64  Identities=23%  Similarity=0.221  Sum_probs=36.4

Q ss_pred             cCcccceeeccCCCCCCHH-HHH-HH-HhcCCCCCEEeecCCCCCC--HHHHHHHHhcCCCCCeEeccCCc
Q 028697          130 SCHDLQDLDLSKSFKLSDR-SLY-AL-AHGCPNLTRLNISGCTSFS--DHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       130 ~~~~L~~L~l~~~~~l~~~-~~~-~l-~~~~~~L~~L~l~~~~~it--~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      .+++|+.|+++++ .+... .+. .+ ...+++|++|+++++ .++  ......+...+++|++|+++++.
T Consensus       171 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          171 VFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             CCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred             cCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence            3566777777765 33332 221 11 145677777777776 565  22333444466777777777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.80  E-value=1e-05  Score=63.50  Aligned_cols=113  Identities=21%  Similarity=0.161  Sum_probs=58.3

Q ss_pred             cCCCceEecCCCCCCCH--HHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCH-HHHHHH-
Q 028697           78 CLGLTHLSLSWCKNNMN--NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYAL-  153 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l-  153 (205)
                      ...+++|+++++.....  ..-..-...+++|++|+++++  .++......+ ..+++|+.|+++++ .+.. .++... 
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~  191 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA--HSPAFSCEQV-RAFPALTSLDLSDN-PGLGERGLMAAL  191 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC--SSCCCCTTSC-CCCTTCCEEECCSC-TTCHHHHHHTTS
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC--CcchhhHHHh-ccCCCCCEEECCCC-CCccchhhhHHH
Confidence            34567777766542210  000011225677777777775  3322111111 24567777777775 3333 222211 


Q ss_pred             -HhcCCCCCEEeecCCCCCC--HHHHHHHHhcCCCCCeEeccCCc
Q 028697          154 -AHGCPNLTRLNISGCTSFS--DHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       154 -~~~~~~L~~L~l~~~~~it--~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                       ...+++|++|+++++ .++  ......+...+++|++|+++++.
T Consensus       192 ~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~  235 (310)
T 4glp_A          192 CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS  235 (310)
T ss_dssp             CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred             hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence             134677777777776 555  23233344466777777777765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.77  E-value=2.1e-05  Score=61.26  Aligned_cols=12  Identities=42%  Similarity=0.650  Sum_probs=5.4

Q ss_pred             cCCCccEEEecC
Q 028697          103 KLTKLQTLVLRQ  114 (205)
Q Consensus       103 ~~~~L~~L~l~~  114 (205)
                      .+++|++|++++
T Consensus       110 ~l~~L~~L~L~~  121 (291)
T 1h6t_A          110 DLKKLKSLSLEH  121 (291)
T ss_dssp             TCTTCCEEECTT
T ss_pred             cCCCCCEEECCC
Confidence            344444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.77  E-value=9.2e-06  Score=63.81  Aligned_cols=89  Identities=27%  Similarity=0.231  Sum_probs=38.1

Q ss_pred             cCCCccEEEecCCCCCCCHH--HHHHHH-hcCcccceeeccCCCCCCH--HHHHHHHhcCCCCCEEeecCCCCCCHHHHH
Q 028697          103 KLTKLQTLVLRQDKPQLEDN--AVEAIA-NSCHDLQDLDLSKSFKLSD--RSLYALAHGCPNLTRLNISGCTSFSDHALA  177 (205)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~--~l~~l~-~~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~l~~~~~it~~~l~  177 (205)
                      .+++|++|+++++  .+...  ....+. ..+++|+.|+++++ .++.  .....+...+++|++|+++++ .++...-.
T Consensus       171 ~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~  246 (312)
T 1wwl_A          171 VFPALSTLDLSDN--PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGA  246 (312)
T ss_dssp             CCSSCCEEECCSC--TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCC
T ss_pred             cCCCCCEEECCCC--CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccch
Confidence            4555666666554  33321  111111 23455666666554 3431  122233334555666666554 33332100


Q ss_pred             HHHhcCCCCCeEeccCCc
Q 028697          178 YLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       178 ~l~~~~~~L~~L~l~~c~  195 (205)
                      .....+++|++|+++++.
T Consensus       247 ~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          247 PSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             SCCCCCTTCCEEECTTSC
T ss_pred             hhhhhcCCCCEEECCCCc
Confidence            111124555555555554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.76  E-value=9.5e-06  Score=66.51  Aligned_cols=37  Identities=24%  Similarity=0.514  Sum_probs=34.4

Q ss_pred             CCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697           41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI   77 (205)
Q Consensus        41 ~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~   77 (205)
                      ..+..||+|++.+||+||+..+++++++|||+|+.++
T Consensus        13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~   49 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   49 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred             CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999975

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.75  E-value=2e-05  Score=61.42  Aligned_cols=101  Identities=22%  Similarity=0.243  Sum_probs=59.0

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +.++++|+++++.-....   . ...+++|+.|+++++  .+++  +..+ ..+++|+.|+++++ .+++-  .. ...+
T Consensus        67 l~~L~~L~L~~n~l~~~~---~-l~~l~~L~~L~l~~n--~l~~--~~~l-~~l~~L~~L~L~~n-~i~~~--~~-l~~l  133 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIK---P-LANLKNLGWLFLDEN--KVKD--LSSL-KDLKKLKSLSLEHN-GISDI--NG-LVHL  133 (291)
T ss_dssp             CTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSS--CCCC--GGGG-TTCTTCCEEECTTS-CCCCC--GG-GGGC
T ss_pred             CCCCCEEEccCCccCCCc---c-cccCCCCCEEECCCC--cCCC--Chhh-ccCCCCCEEECCCC-cCCCC--hh-hcCC
Confidence            457788888776432211   1 567788888888876  4443  2222 35677888887776 44431  11 2346


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++.-  . ....+++|++|++++|.
T Consensus       134 ~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~N~  167 (291)
T 1h6t_A          134 PQLESLYLGNN-KITDI--T-VLSRLTKLDTLSLEDNQ  167 (291)
T ss_dssp             TTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSSC
T ss_pred             CCCCEEEccCC-cCCcc--h-hhccCCCCCEEEccCCc
Confidence            67777777665 44442  2 22356667777666664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.74  E-value=1.4e-05  Score=68.68  Aligned_cols=81  Identities=23%  Similarity=0.301  Sum_probs=39.9

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~  181 (205)
                      ..+++|+.|+++.+  .++.-  ..+ ..+++|+.|+|+++ .+++..-   ...+++|++|+++++ .+++-  .. ..
T Consensus       128 ~~l~~L~~L~Ls~N--~l~~l--~~l-~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l--~~-l~  194 (605)
T 1m9s_A          128 VHLPQLESLYLGNN--KITDI--TVL-SRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDL--RA-LA  194 (605)
T ss_dssp             GGCTTCSEEECCSS--CCCCC--GGG-GSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBC--GG-GT
T ss_pred             cCCCccCEEECCCC--ccCCc--hhh-cccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCC--hH-Hc
Confidence            34555555555554  23321  112 24556666666654 3332111   234566666666655 44431  22 23


Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      .+++|+.|++++|.
T Consensus       195 ~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          195 GLKNLDVLELFSQE  208 (605)
T ss_dssp             TCTTCSEEECCSEE
T ss_pred             cCCCCCEEEccCCc
Confidence            56667777776665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.74  E-value=6.3e-06  Score=59.28  Aligned_cols=108  Identities=17%  Similarity=0.169  Sum_probs=62.1

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      +.+++|+++++. ++.  + .....+++|+.|+++++  .++.- ...+...+++|+.|+++++ .+++-.-......++
T Consensus        42 ~~L~~L~Ls~N~-l~~--~-~~l~~l~~L~~L~Ls~N--~l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~  113 (176)
T 1a9n_A           42 DQFDAIDFSDNE-IRK--L-DGFPLLRRLKTLLVNNN--RICRI-GEGLDQALPDLTELILTNN-SLVELGDLDPLASLK  113 (176)
T ss_dssp             TCCSEEECCSSC-CCE--E-CCCCCCSSCCEEECCSS--CCCEE-CSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCT
T ss_pred             CCCCEEECCCCC-CCc--c-cccccCCCCCEEECCCC--ccccc-CcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCC
Confidence            367788887754 222  1 23445678888888876  44421 1122235778888888876 454311111223577


Q ss_pred             CCCEEeecCCCCCCHHH--HHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHA--LAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~--l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .++...  -..+...+|+|++|+++++.
T Consensus       114 ~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          114 SLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            8888888776 443211  11234467888888887765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.72  E-value=2.3e-05  Score=61.47  Aligned_cols=14  Identities=14%  Similarity=-0.090  Sum_probs=6.8

Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      .+++|++|+++++.
T Consensus       193 ~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          193 SLPNLIEVHLKNNQ  206 (308)
T ss_dssp             GCTTCCEEECTTSC
T ss_pred             CCCCCCEEEccCCc
Confidence            44455555555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.70  E-value=1.7e-05  Score=68.21  Aligned_cols=101  Identities=24%  Similarity=0.209  Sum_probs=60.2

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +..|++|+++++.....    .....+++|+.|+++.+  .+++  +..+ ..+++|+.|+++++ .++..   .....+
T Consensus        86 l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N--~l~~--l~~l-~~l~~L~~L~Ls~N-~l~~l---~~l~~l  152 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKDL----SSLKDLKKLKSLSLEHN--GISD--INGL-VHLPQLESLYLGNN-KITDI---TVLSRL  152 (605)
T ss_dssp             CTTCCEEECCSSCCCCC----TTSTTCTTCCEEECTTS--CCCC--CGGG-GGCTTCSEEECCSS-CCCCC---GGGGSC
T ss_pred             CCCCCEEECcCCCCCCC----hhhccCCCCCEEEecCC--CCCC--Cccc-cCCCccCEEECCCC-ccCCc---hhhccc
Confidence            45667777766542211    12345677777777775  3332  2222 34677888888776 44432   223457


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|+.|+++++ .++...  . ...+++|++|++++|.
T Consensus       153 ~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          153 TKLDTLSLEDN-QISDIV--P-LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             TTCSEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSC
T ss_pred             CCCCEEECcCC-cCCCch--h-hccCCCCCEEECcCCC
Confidence            78888888776 554422  1 3467888888888875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.69  E-value=2.7e-05  Score=61.13  Aligned_cols=81  Identities=27%  Similarity=0.274  Sum_probs=38.3

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~  181 (205)
                      ..+++|++|+++++  .+++  +..+ ..+++|+.|+++++ .++....   ...+++|++|+++++ .+++-  .. ..
T Consensus       104 ~~l~~L~~L~l~~n--~l~~--~~~l-~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~--~~-l~  170 (308)
T 1h6u_A          104 AGLQSIKTLDLTST--QITD--VTPL-AGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNA-QVSDL--TP-LA  170 (308)
T ss_dssp             TTCTTCCEEECTTS--CCCC--CGGG-TTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCC--GG-GT
T ss_pred             cCCCCCCEEECCCC--CCCC--chhh-cCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCC-cCCCC--hh-hc
Confidence            34455555555554  2222  1111 23455666666554 3322111   234566666666655 44431  11 23


Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      .+++|++|+++++.
T Consensus       171 ~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          171 NLSKLTTLKADDNK  184 (308)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCc
Confidence            56666666666654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.67  E-value=1.3e-05  Score=67.14  Aligned_cols=36  Identities=19%  Similarity=0.232  Sum_probs=15.7

Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCC
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQD  115 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  115 (205)
                      .+++|+++++.-.....+......+++|++|+++++
T Consensus       349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN  384 (520)
T ss_dssp             SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred             CCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence            445555544432222222333444555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.67  E-value=5.7e-06  Score=59.49  Aligned_cols=106  Identities=15%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +..+++|+++++.- +.  +..+....++|+.|+++++  .++.  +..+ ..+++|+.|+++++ .++.-. ..+...+
T Consensus        18 ~~~L~~L~l~~n~l-~~--i~~~~~~~~~L~~L~Ls~N--~l~~--~~~l-~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l   87 (176)
T 1a9n_A           18 AVRDRELDLRGYKI-PV--IENLGATLDQFDAIDFSDN--EIRK--LDGF-PLLRRLKTLLVNNN-RICRIG-EGLDQAL   87 (176)
T ss_dssp             TTSCEEEECTTSCC-CS--CCCGGGGTTCCSEEECCSS--CCCE--ECCC-CCCSSCCEEECCSS-CCCEEC-SCHHHHC
T ss_pred             cCCceEEEeeCCCC-ch--hHHhhhcCCCCCEEECCCC--CCCc--cccc-ccCCCCCEEECCCC-cccccC-cchhhcC
Confidence            45789999988743 21  2335555669999999997  5554  2222 35789999999997 555211 1123468


Q ss_pred             CCCCEEeecCCCCCCHHH-HHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHA-LAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~-l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++.-. +.. ...+++|++|++++++
T Consensus        88 ~~L~~L~L~~N-~i~~~~~~~~-l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           88 PDLTELILTNN-SLVELGDLDP-LASLKSLTYLCILRNP  124 (176)
T ss_dssp             TTCCEEECCSC-CCCCGGGGGG-GGGCTTCCEEECCSSG
T ss_pred             CCCCEEECCCC-cCCcchhhHh-hhcCCCCCEEEecCCC
Confidence            99999999987 665422 223 3479999999999987

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.63  E-value=1.1e-05  Score=63.19  Aligned_cols=112  Identities=19%  Similarity=0.137  Sum_probs=57.0

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHH-HHHHH--HhcCcccceeeccCCCCCC--HHHHHH
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDN-AVEAI--ANSCHDLQDLDLSKSFKLS--DRSLYA  152 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~l~~l--~~~~~~L~~L~l~~~~~l~--~~~~~~  152 (205)
                      .+++++|+++++.- .. ........+++|++|+++++  .+... .+..-  ...+++|+.|+++++ .++  ......
T Consensus       144 ~~~L~~L~Ls~n~l-~~-~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~  218 (310)
T 4glp_A          144 KPGLKVLSIAQAHS-PA-FSCEQVRAFPALTSLDLSDN--PGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAA  218 (310)
T ss_dssp             CSCCCEEEEECCSS-CC-CCTTSCCCCTTCCEEECCSC--TTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHH
T ss_pred             ccCCCEEEeeCCCc-ch-hhHHHhccCCCCCEEECCCC--CCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHH
Confidence            45677777776542 11 01123345677777777775  33322 12111  124567777777776 454  222223


Q ss_pred             HHhcCCCCCEEeecCCCCCCHHHHHHHHh--cCCCCCeEeccCCc
Q 028697          153 LAHGCPNLTRLNISGCTSFSDHALAYLCG--FCRKLKILNLCGCV  195 (205)
Q Consensus       153 l~~~~~~L~~L~l~~~~~it~~~l~~l~~--~~~~L~~L~l~~c~  195 (205)
                      +...+++|++|+++++ .++...-..+..  .+++|++|+++++.
T Consensus       219 l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             HHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred             HHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC
Confidence            3455677777777665 444321111111  12567777776664

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.58  E-value=5.2e-05  Score=61.88  Aligned_cols=38  Identities=26%  Similarity=0.407  Sum_probs=35.3

Q ss_pred             CCCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697           40 ITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI   77 (205)
Q Consensus        40 ~~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~   77 (205)
                      ...+..||+|++.+||+||+..++.++++|||+|+.++
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~   53 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhc
Confidence            45688999999999999999999999999999999975

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.55  E-value=4.4e-06  Score=68.74  Aligned_cols=112  Identities=18%  Similarity=0.133  Sum_probs=66.3

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHH-HHhc
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA-LAHG  156 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~-l~~~  156 (205)
                      +.+|++|+++++..... .....+..+++|++|+++++  .++......+ ..+++|+.|+++++ .++...... ....
T Consensus        53 l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~~~  127 (455)
T 3v47_A           53 LQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYN--QFLQLETGAF-NGLANLEVLTLTQC-NLDGAVLSGNFFKP  127 (455)
T ss_dssp             CTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTC--TTCEECTTTT-TTCTTCCEEECTTS-CCBTHHHHSSTTTT
T ss_pred             CccccEEECcCCcccce-ECcccccccccCCEEeCCCC--ccCccChhhc-cCcccCCEEeCCCC-CCCccccCcccccC
Confidence            45678888877642111 00123456788888888876  4432211222 34678888888886 565433222 1345


Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++...-..+...+++|++|+++++.
T Consensus       128 l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A          128 LTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             CTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             cccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCc
Confidence            778888888776 55443222223467888888888875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.52  E-value=2.8e-06  Score=62.38  Aligned_cols=103  Identities=18%  Similarity=0.153  Sum_probs=66.2

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +.++++|+++++.- .  .+......+++|+.|+++++  .++.  +..+. .+++|+.|+++++ .+++-........+
T Consensus        69 l~~L~~L~l~~n~l-~--~l~~~~~~~~~L~~L~L~~N--~l~~--l~~~~-~l~~L~~L~l~~N-~i~~~~~~~~l~~l  139 (198)
T 1ds9_A           69 MENLRILSLGRNLI-K--KIENLDAVADTLEELWISYN--QIAS--LSGIE-KLVNLRVLYMSNN-KITNWGEIDKLAAL  139 (198)
T ss_dssp             HTTCCEEEEEEEEE-C--SCSSHHHHHHHCSEEEEEEE--ECCC--HHHHH-HHHHSSEEEESEE-ECCCHHHHHHHTTT
T ss_pred             CCCCCEEECCCCCc-c--cccchhhcCCcCCEEECcCC--cCCc--CCccc-cCCCCCEEECCCC-cCCchhHHHHHhcC
Confidence            56788888876532 2  11223444578999999886  4553  23343 4688999999986 56643322334568


Q ss_pred             CCCCEEeecCCCCCCHH---------HHHHHHhcCCCCCeEe
Q 028697          158 PNLTRLNISGCTSFSDH---------ALAYLCGFCRKLKILN  190 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~---------~l~~l~~~~~~L~~L~  190 (205)
                      ++|++|+++++ .++..         ....+...+|+|++|+
T Consensus       140 ~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          140 DKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            89999999886 44332         2223345789999997

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.49  E-value=7.3e-05  Score=61.90  Aligned_cols=14  Identities=7%  Similarity=-0.121  Sum_probs=7.0

Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      .+++|++|++++|.
T Consensus       351 ~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          351 NLTNINWLSAGHNQ  364 (466)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             cCCCCCEEeCCCCc
Confidence            34555555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.49  E-value=7.5e-05  Score=61.83  Aligned_cols=14  Identities=14%  Similarity=0.081  Sum_probs=6.9

Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      .+++|++|++++|.
T Consensus       373 ~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          373 NLTRITQLGLNDQA  386 (466)
T ss_dssp             TCTTCCEEECCCEE
T ss_pred             cCCCCCEEeccCCc
Confidence            44555555555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.48  E-value=0.00023  Score=59.84  Aligned_cols=108  Identities=22%  Similarity=0.288  Sum_probs=53.1

Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHH--HhcCcccceeeccCCCCCCHHH-HHHHHhc
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAI--ANSCHDLQDLDLSKSFKLSDRS-LYALAHG  156 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l--~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~  156 (205)
                      .++.++++++....  .-..+...+++|++|+++++  .+++......  ...+++|+.|+++++ .++.-. .......
T Consensus       311 ~L~~L~l~~n~l~~--ip~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~  385 (549)
T 2z81_A          311 KVKRITVENSKVFL--VPCSFSQHLKSLEFLDLSEN--LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLT  385 (549)
T ss_dssp             TCCEEEEESSCCCC--CCHHHHHHCTTCCEEECCSS--CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGG
T ss_pred             cceEEEeccCcccc--CCHHHHhcCccccEEEccCC--ccccccccchhhhhccccCcEEEccCC-cccccccchhhhhc
Confidence            45555555543111  00123345667777777765  5555433221  124566777777765 443322 1223445


Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++.  +......+++|++|+++++.
T Consensus       386 l~~L~~L~Ls~N-~l~~--lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          386 LKNLTSLDISRN-TFHP--MPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             CTTCCEEECTTC-CCCC--CCSCCCCCTTCCEEECTTSC
T ss_pred             CCCCCEEECCCC-CCcc--CChhhcccccccEEECCCCC
Confidence            667777777665 4441  11111234566666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.48  E-value=4.3e-05  Score=58.63  Aligned_cols=14  Identities=36%  Similarity=0.572  Sum_probs=6.9

Q ss_pred             hcCCCccEEEecCC
Q 028697          102 PKLTKLQTLVLRQD  115 (205)
Q Consensus       102 ~~~~~L~~L~l~~~  115 (205)
                      ..+++|+.|+++++
T Consensus        82 ~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           82 KDLTKLEELSVNRN   95 (263)
T ss_dssp             TTCSSCCEEECCSS
T ss_pred             ccCCCCCEEECCCC
Confidence            34455555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.46  E-value=1.1e-05  Score=62.08  Aligned_cols=109  Identities=25%  Similarity=0.215  Sum_probs=55.5

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +..|++|+++++.- +. ........+++|++|+++++  .++.. .......+++|+.|+++++ .++...- .....+
T Consensus        84 l~~L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~L~~n--~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l  156 (272)
T 3rfs_A           84 LTNLTYLILTGNQL-QS-LPNGVFDKLTNLKELVLVEN--QLQSL-PDGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKL  156 (272)
T ss_dssp             CTTCCEEECTTSCC-CC-CCTTTTTTCTTCCEEECTTS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred             CCCCCEEECCCCcc-Cc-cChhHhcCCcCCCEEECCCC--cCCcc-CHHHhccCCCCCEEECCCC-ccCccCH-HHhccC
Confidence            34566666665431 11 01122345667777777665  33311 1111234567777777765 3432110 112346


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++...- .....+++|++|+++++.
T Consensus       157 ~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          157 TNLTELDLSYN-QLQSLPE-GVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             ccCCEEECCCC-CcCccCH-HHhcCCccCCEEECCCCc
Confidence            77777777776 4543211 112356778888777765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.43  E-value=6.7e-06  Score=67.65  Aligned_cols=110  Identities=19%  Similarity=0.127  Sum_probs=72.9

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      ..+++|+++++. +.. .....+..+++|++|+++.+  .+...........+++|+.|+++++ .++...... ...++
T Consensus        30 ~~l~~L~Ls~n~-i~~-~~~~~~~~l~~L~~L~L~~n--~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~  103 (455)
T 3v47_A           30 AHVNYVDLSLNS-IAE-LNETSFSRLQDLQFLKVEQQ--TPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGA-FNGLA  103 (455)
T ss_dssp             TTCCEEECCSSC-CCE-ECTTTTSSCTTCCEEECCCC--STTCEECTTTTTTCTTCCEEECTTC-TTCEECTTT-TTTCT
T ss_pred             CccCEEEecCCc-cCc-CChhHhccCccccEEECcCC--cccceECcccccccccCCEEeCCCC-ccCccChhh-ccCcc
Confidence            468999998864 222 11234567899999999986  3321111111245799999999987 444321111 24578


Q ss_pred             CCCEEeecCCCCCCHHHHHH-HHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAY-LCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~-l~~~~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .++...... ....+++|++|+++++.
T Consensus       104 ~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~  140 (455)
T 3v47_A          104 NLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN  140 (455)
T ss_dssp             TCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB
T ss_pred             cCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc
Confidence            9999999997 777654443 13378999999999987

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.42  E-value=4.3e-06  Score=66.30  Aligned_cols=12  Identities=33%  Similarity=0.639  Sum_probs=5.5

Q ss_pred             cCCCccEEEecC
Q 028697          103 KLTKLQTLVLRQ  114 (205)
Q Consensus       103 ~~~~L~~L~l~~  114 (205)
                      .+++|++|++++
T Consensus       148 ~l~~L~~L~L~~  159 (328)
T 4fcg_A          148 SLNRLRELSIRA  159 (328)
T ss_dssp             GCTTCCEEEEEE
T ss_pred             cCcCCCEEECCC
Confidence            344444444444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.42  E-value=1.9e-06  Score=67.37  Aligned_cols=14  Identities=14%  Similarity=0.116  Sum_probs=7.0

Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      .+++|++|+++++.
T Consensus       221 ~l~~L~~L~L~~N~  234 (306)
T 2z66_A          221 CLNSLQVLDYSLNH  234 (306)
T ss_dssp             TCTTCCEEECTTSC
T ss_pred             CcccCCEeECCCCC
Confidence            34555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.40  E-value=1.6e-05  Score=61.45  Aligned_cols=88  Identities=19%  Similarity=0.154  Sum_probs=47.1

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~  181 (205)
                      ..+++|++|+++++  .++.-.. .....+++|+.|+++++ .++...... ...+++|++|+++++ .++......+ .
T Consensus       150 ~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~-~  222 (285)
T 1ozn_A          150 RDLGNLTHLFLHGN--RISSVPE-RAFRGLHSLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEAL-A  222 (285)
T ss_dssp             TTCTTCCEEECCSS--CCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHH-T
T ss_pred             ccCCCccEEECCCC--cccccCH-HHhcCccccCEEECCCC-cccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHc-c
Confidence            34566666666654  3331111 11123566777777665 333221111 134677888888776 5554333333 3


Q ss_pred             cCCCCCeEeccCCcc
Q 028697          182 FCRKLKILNLCGCVK  196 (205)
Q Consensus       182 ~~~~L~~L~l~~c~~  196 (205)
                      .+++|++|++++++-
T Consensus       223 ~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          223 PLRALQYLRLNDNPW  237 (285)
T ss_dssp             TCTTCCEEECCSSCE
T ss_pred             cCcccCEEeccCCCc
Confidence            678888888887763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.38  E-value=4.5e-05  Score=58.48  Aligned_cols=56  Identities=16%  Similarity=0.202  Sum_probs=39.2

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS  142 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~  142 (205)
                      ...+++|+++++.-...+    -...+++|+.|+++++  .+++-.  . ...+++|+.|+++++
T Consensus        40 l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~N--~i~~~~--~-l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHN--QISDLS--P-LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT----TGGGCTTCCEEECCSS--CCCCCG--G-GTTCSSCCEEECCSS
T ss_pred             cCcCcEEECcCCCcccch----HHhhCCCCCEEECCCC--ccCCCh--h-hccCCCCCEEECCCC
Confidence            578899999987532221    3457899999999987  444321  1 345788888888876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.37  E-value=1.1e-05  Score=64.07  Aligned_cols=88  Identities=25%  Similarity=0.351  Sum_probs=43.5

Q ss_pred             HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH
Q 028697          101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC  180 (205)
Q Consensus       101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~  180 (205)
                      ...+++|++|+++++  .++. .... ...+++|+.|+++++.....  +......+++|++|++++|.... ..-.. .
T Consensus       202 l~~l~~L~~L~L~~N--~l~~-l~~~-l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~-~~p~~-~  273 (328)
T 4fcg_A          202 IANLQNLKSLKIRNS--PLSA-LGPA-IHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLL-TLPLD-I  273 (328)
T ss_dssp             GGGCTTCCEEEEESS--CCCC-CCGG-GGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCC-BCCTT-G
T ss_pred             hcCCCCCCEEEccCC--CCCc-Cchh-hccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchh-hcchh-h
Confidence            345566666666664  2321 1111 23456677777666532211  00012345677777776653222 11111 2


Q ss_pred             hcCCCCCeEeccCCcc
Q 028697          181 GFCRKLKILNLCGCVK  196 (205)
Q Consensus       181 ~~~~~L~~L~l~~c~~  196 (205)
                      ..+++|++|++++|..
T Consensus       274 ~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          274 HRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             GGCTTCCEEECTTCTT
T ss_pred             hcCCCCCEEeCCCCCc
Confidence            3577777777777764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.37  E-value=1.3e-05  Score=61.79  Aligned_cols=110  Identities=20%  Similarity=0.134  Sum_probs=71.6

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +..|++|+++++.-..  ........+++|++|+++++  .++.. .......+++|+.|+++++ .++...- .....+
T Consensus       108 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n--~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l  180 (272)
T 3rfs_A          108 LTNLKELVLVENQLQS--LPDGVFDKLTNLTYLNLAHN--QLQSL-PKGVFDKLTNLTELDLSYN-QLQSLPE-GVFDKL  180 (272)
T ss_dssp             CTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECCSS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred             CcCCCEEECCCCcCCc--cCHHHhccCCCCCEEECCCC--ccCcc-CHHHhccCccCCEEECCCC-CcCccCH-HHhcCC
Confidence            4678999998865221  11123457889999999987  44421 1122245789999999987 4542111 112457


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK  196 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~  196 (205)
                      ++|++|+++++ .++...- .....+++|++|++++++-
T Consensus       181 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          181 TQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             TTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred             ccCCEEECCCC-cCCccCH-HHHhCCcCCCEEEccCCCc
Confidence            89999999887 5654221 2234689999999998763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.34  E-value=2.1e-05  Score=57.53  Aligned_cols=105  Identities=20%  Similarity=0.189  Sum_probs=71.2

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ...+++|+++++.- ..  +. ....+++|+.|+++++  .++.  +......+++|+.|+++++ .++.-.  . ...+
T Consensus        47 l~~L~~L~ls~n~l-~~--l~-~~~~l~~L~~L~l~~n--~l~~--l~~~~~~~~~L~~L~L~~N-~l~~l~--~-~~~l  114 (198)
T 1ds9_A           47 LKACKHLALSTNNI-EK--IS-SLSGMENLRILSLGRN--LIKK--IENLDAVADTLEELWISYN-QIASLS--G-IEKL  114 (198)
T ss_dssp             TTTCSEEECSEEEE-SC--CC-CHHHHTTCCEEEEEEE--EECS--CSSHHHHHHHCSEEEEEEE-ECCCHH--H-HHHH
T ss_pred             CCCCCEEECCCCCC-cc--cc-ccccCCCCCEEECCCC--Cccc--ccchhhcCCcCCEEECcCC-cCCcCC--c-cccC
Confidence            45778999887532 21  12 3446789999999986  3331  2223344689999999997 555422  2 2346


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++.-........+++|++|++++++
T Consensus       115 ~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          115 VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence            89999999887 67753332233479999999999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.34  E-value=8.8e-05  Score=60.46  Aligned_cols=37  Identities=24%  Similarity=0.413  Sum_probs=33.9

Q ss_pred             CCCCCCCHH----HHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697           41 TEWKDIPME----LLLRILSLVDEPTVIVASGVCSGWRDAI   77 (205)
Q Consensus        41 ~~~~~Lp~e----~l~~If~~l~~~~l~~~~~vck~w~~~~   77 (205)
                      ..+..||+|    ++.+||+||+..++.++++|||+|+.++
T Consensus         9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~   49 (435)
T 1p22_A            9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVT   49 (435)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHH
T ss_pred             ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            456779999    9999999999999999999999999885

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.30  E-value=9.9e-06  Score=59.71  Aligned_cols=109  Identities=20%  Similarity=0.147  Sum_probs=61.6

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ...|++|+++++. +.. .....+..+++|++|+++++  .++.- .......+++|+.|+++++ .++...- .....+
T Consensus        51 l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n--~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l  123 (208)
T 2o6s_A           51 LTSLTQLYLGGNK-LQS-LPNGVFNKLTSLTYLNLSTN--QLQSL-PNGVFDKLTQLKELALNTN-QLQSLPD-GVFDKL  123 (208)
T ss_dssp             CTTCSEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred             cccCcEEECCCCc-cCc-cChhhcCCCCCcCEEECCCC--cCCcc-CHhHhcCccCCCEEEcCCC-cCcccCH-hHhccC
Confidence            4567888887653 221 11123456778888888875  33311 1111235678888888875 4432111 112346


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++...- .....+++|++|++++++
T Consensus       124 ~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          124 TQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             TTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred             CcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCCC
Confidence            78888888776 4543211 222357888888888865

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.29  E-value=2.2e-06  Score=67.05  Aligned_cols=110  Identities=24%  Similarity=0.161  Sum_probs=63.6

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      ..+++|+++++. +...........+++|++|+++++  .++......+ ..+++|+.|+++++ .++...... ...++
T Consensus       150 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~  223 (306)
T 2z66_A          150 SSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC--QLEQLSPTAF-NSLSSLQVLNMSHN-NFFSLDTFP-YKCLN  223 (306)
T ss_dssp             TTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS--CCCEECTTTT-TTCTTCCEEECTTS-CCSBCCSGG-GTTCT
T ss_pred             cCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCC--CcCCcCHHHh-cCCCCCCEEECCCC-ccCccChhh-ccCcc
Confidence            345566665532 111111223445677888888775  4443211222 34678888888886 343221111 24578


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcC-CCCCeEeccCCcc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFC-RKLKILNLCGCVK  196 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~-~~L~~L~l~~c~~  196 (205)
                      +|++|+++++ .++......+. .+ ++|++|++++++-
T Consensus       224 ~L~~L~L~~N-~l~~~~~~~~~-~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          224 SLQVLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             TCCEEECTTS-CCCBCSSSSCC-CCCTTCCEEECTTCCE
T ss_pred             cCCEeECCCC-CCcccCHHHHH-hhhccCCEEEccCCCe
Confidence            9999999887 66554333333 34 5899999999874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.29  E-value=7.7e-05  Score=62.45  Aligned_cols=107  Identities=24%  Similarity=0.316  Sum_probs=48.1

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCH-HHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLED-NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ..+++|+++++. ++.. .......+++|++|+++++  .++. ..+......+++|+.|+++++ .++...-......+
T Consensus       324 ~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~N--~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l  398 (520)
T 2z7x_B          324 SPFLHLDFSNNL-LTDT-VFENCGHLTELETLILQMN--QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWT  398 (520)
T ss_dssp             CCCCEEECCSSC-CCTT-TTTTCCCCSSCCEEECCSS--CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCC
T ss_pred             CcccEEEeECCc-cChh-hhhhhccCCCCCEEEccCC--ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccC
Confidence            445666665543 2211 0112234556666666654  3332 112222234566666666654 33220000011234


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcC-CCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFC-RKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~-~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++....    ... ++|++|++++|.
T Consensus       399 ~~L~~L~Ls~N-~l~~~~~----~~l~~~L~~L~Ls~N~  432 (520)
T 2z7x_B          399 KSLLSLNMSSN-ILTDTIF----RCLPPRIKVLDLHSNK  432 (520)
T ss_dssp             TTCCEEECCSS-CCCGGGG----GSCCTTCCEEECCSSC
T ss_pred             ccCCEEECcCC-CCCcchh----hhhcccCCEEECCCCc
Confidence            56666666665 4443211    122 466677666664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.29  E-value=2e-06  Score=72.74  Aligned_cols=13  Identities=23%  Similarity=0.253  Sum_probs=6.5

Q ss_pred             cCCCccEEEecCC
Q 028697          103 KLTKLQTLVLRQD  115 (205)
Q Consensus       103 ~~~~L~~L~l~~~  115 (205)
                      .+++|++|+++.+
T Consensus       419 ~l~~L~~L~l~~n  431 (570)
T 2z63_A          419 SLRNLIYLDISHT  431 (570)
T ss_dssp             TCTTCCEEECTTS
T ss_pred             cCCCCCEEeCcCC
Confidence            4445555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.28  E-value=7.2e-06  Score=70.00  Aligned_cols=38  Identities=16%  Similarity=0.099  Sum_probs=17.9

Q ss_pred             cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       156 ~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      .+++|++|++++| .++...-..+ ..+++|++|+++++.
T Consensus       474 ~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          474 TLGRLEILVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHNR  511 (606)
T ss_dssp             GCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC
T ss_pred             cCCCccEEECCCC-ccCccChhhh-ccccCCCEEECCCCc
Confidence            3455555555554 3332211112 245556666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.28  E-value=2.6e-05  Score=62.98  Aligned_cols=86  Identities=17%  Similarity=0.118  Sum_probs=37.3

Q ss_pred             HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH
Q 028697          101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC  180 (205)
Q Consensus       101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~  180 (205)
                      ...+++|++|+++++  .++......+ ..+++|+.|+++++ .++.-.  .....+++|++|+++++ .++.-  ..-.
T Consensus       244 l~~l~~L~~L~Ls~n--~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n-~l~~~--~~~~  314 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYN--ELEKIMYHPF-VKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHN-HLLHV--ERNQ  314 (390)
T ss_dssp             GGGCTTCSEEECCSS--CCCEEESGGG-TTCSSCCEEECCSS-CCCEEE--CSSSCCTTCCEEECCSS-CCCCC--GGGH
T ss_pred             HcCCCCccEEECCCC--cCCCcChhHc-cccccCCEEECCCC-cCcccC--cccCCCCCCCEEECCCC-cceec--Cccc
Confidence            345566666666664  3332111112 23455666666554 332210  00123455666666554 33311  1001


Q ss_pred             hcCCCCCeEeccCCc
Q 028697          181 GFCRKLKILNLCGCV  195 (205)
Q Consensus       181 ~~~~~L~~L~l~~c~  195 (205)
                      ..+++|++|+++++.
T Consensus       315 ~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          315 PQFDRLENLYLDHNS  329 (390)
T ss_dssp             HHHTTCSEEECCSSC
T ss_pred             cccCcCCEEECCCCc
Confidence            234555555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.27  E-value=1e-05  Score=59.64  Aligned_cols=13  Identities=31%  Similarity=0.128  Sum_probs=6.7

Q ss_pred             cCCCCCeEeccCC
Q 028697          182 FCRKLKILNLCGC  194 (205)
Q Consensus       182 ~~~~L~~L~l~~c  194 (205)
                      .+++|++|+++++
T Consensus       122 ~l~~L~~L~l~~N  134 (208)
T 2o6s_A          122 KLTQLKDLRLYQN  134 (208)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             cCCcCCEEECCCC
Confidence            3455555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.27  E-value=1.3e-06  Score=68.85  Aligned_cols=116  Identities=18%  Similarity=0.161  Sum_probs=57.9

Q ss_pred             hHHhhc------CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecC-CCCCCCHHHHHHHHhcCcccceeeccCCCCC
Q 028697           73 WRDAIC------LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQ-DKPQLEDNAVEAIANSCHDLQDLDLSKSFKL  145 (205)
Q Consensus        73 w~~~~~------~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l  145 (205)
                      |..+.|      ..+++|+++++.-.....+......+++|++|++++ +  .+.......+ ..+++|+.|+++++ .+
T Consensus        38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n--~l~~~~p~~l-~~l~~L~~L~Ls~n-~l  113 (313)
T 1ogq_A           38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN--NLVGPIPPAI-AKLTQLHYLYITHT-NV  113 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET--TEESCCCGGG-GGCTTCSEEEEEEE-CC
T ss_pred             CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC--cccccCChhH-hcCCCCCEEECcCC-ee
Confidence            777755      357788887654211001122445677888888873 2  2222111122 24677777777765 33


Q ss_pred             CHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          146 SDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       146 ~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +...-. ....+++|++|+++++ .++...-..+ ..+++|++|+++++.
T Consensus       114 ~~~~p~-~~~~l~~L~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A          114 SGAIPD-FLSQIKTLVTLDFSYN-ALSGTLPPSI-SSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEECCG-GGGGCTTCCEEECCSS-EEESCCCGGG-GGCTTCCEEECCSSC
T ss_pred             CCcCCH-HHhCCCCCCEEeCCCC-ccCCcCChHH-hcCCCCCeEECcCCc
Confidence            211000 1234566777777665 3332111112 246666666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.27  E-value=8.5e-06  Score=62.72  Aligned_cols=110  Identities=21%  Similarity=0.227  Sum_probs=51.1

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ...+++|+++++.- .. .....+..+++|++|+++++  .++......+ ..+++|+.|++.++ .++...-.. ...+
T Consensus        51 l~~L~~L~l~~n~l-~~-~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~-~~~l  123 (276)
T 2z62_A           51 FPELQVLDLSRCEI-QT-IEDGAYQSLSHLSTLILTGN--PIQSLALGAF-SGLSSLQKLVAVET-NLASLENFP-IGHL  123 (276)
T ss_dssp             CTTCSEEECTTCCC-CE-ECTTTTTTCTTCCEEECTTC--CCCEECTTTT-TTCTTCCEEECTTS-CCCCSTTCC-CTTC
T ss_pred             ccCCcEEECCCCcC-Cc-cCHHHccCCcCCCEEECCCC--ccCccChhhh-cCCccccEEECCCC-CccccCchh-cccC
Confidence            34566777766531 11 00112345566777777664  3332111112 23566666666654 222111000 1235


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++...+......+++|++|+++++.
T Consensus       124 ~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          124 KTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             TTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC
Confidence            66666666654 34332111222356666666666664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.26  E-value=5.5e-06  Score=70.72  Aligned_cols=12  Identities=42%  Similarity=0.600  Sum_probs=5.6

Q ss_pred             CCCCCeEeccCC
Q 028697          183 CRKLKILNLCGC  194 (205)
Q Consensus       183 ~~~L~~L~l~~c  194 (205)
                      +++|++|++++|
T Consensus       475 l~~L~~L~Ls~n  486 (606)
T 3t6q_A          475 LGRLEILVLSFC  486 (606)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCccEEECCCC
Confidence            444444444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.26  E-value=2.6e-05  Score=58.52  Aligned_cols=108  Identities=21%  Similarity=0.140  Sum_probs=62.8

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ..+|++|+++++.- .. .....+..+++|+.|+++++  .++.- .......+++|+.|+++++ .++.  +..-...+
T Consensus        63 l~~L~~L~L~~N~l-~~-i~~~~~~~l~~L~~L~Ls~N--~l~~l-~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l  134 (229)
T 3e6j_A           63 LINLKELYLGSNQL-GA-LPVGVFDSLTQLTVLDLGTN--QLTVL-PSAVFDRLVHLKELFMCCN-KLTE--LPRGIERL  134 (229)
T ss_dssp             CTTCCEEECCSSCC-CC-CCTTTTTTCTTCCEEECCSS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCS--CCTTGGGC
T ss_pred             ccCCcEEECCCCCC-CC-cChhhcccCCCcCEEECCCC--cCCcc-ChhHhCcchhhCeEeccCC-cccc--cCcccccC
Confidence            45678888876542 11 00123456788888888876  34321 1112235678888888876 4441  11112457


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++.-.- .....+++|++|++++.+
T Consensus       135 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          135 THLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred             CCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence            88888888776 5553211 222367888888888766

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.23  E-value=1.2e-05  Score=62.07  Aligned_cols=37  Identities=16%  Similarity=0.021  Sum_probs=18.0

Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++......+ ..+++|++|+++++.
T Consensus       176 l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          176 LHSLDRLLLHQN-RVAHVHPHAF-RDLGRLMTLYLFANN  212 (285)
T ss_dssp             CTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC
T ss_pred             ccccCEEECCCC-cccccCHhHc-cCcccccEeeCCCCc
Confidence            455556665554 3333221222 245666666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.23  E-value=4e-06  Score=70.89  Aligned_cols=110  Identities=19%  Similarity=0.170  Sum_probs=70.4

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      ..+++|+++++....  ........+++|++|+++++  .+++..+......+++|+.|+++++ .++...... ...++
T Consensus       421 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n--~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~  494 (570)
T 2z63_A          421 RNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGN--SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA-FNSLS  494 (570)
T ss_dssp             TTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTC--EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCT
T ss_pred             CCCCEEeCcCCcccc--cchhhhhcCCcCcEEECcCC--cCccccchhhhhcccCCCEEECCCC-ccccCChhh-hhccc
Confidence            456666666653211  01234457899999999987  4442222222346789999999997 555322112 23589


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK  196 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~  196 (205)
                      +|++|+++++ .++...... ...+++|++|++++++-
T Consensus       495 ~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          495 SLQVLNMASN-QLKSVPDGI-FDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             TCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred             CCCEEeCCCC-cCCCCCHHH-hhcccCCcEEEecCCcc
Confidence            9999999987 565432222 24789999999999873

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.22  E-value=2.2e-05  Score=59.66  Aligned_cols=87  Identities=22%  Similarity=0.234  Sum_probs=42.5

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~  181 (205)
                      ..+++|++|+++++  .++.- .......+++|+.|+++++ .++.-... ....+++|++|+++++ .++...-.. ..
T Consensus       104 ~~l~~L~~L~L~~N--~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~-~~  176 (251)
T 3m19_A          104 DHLTQLDKLYLGGN--QLKSL-PSGVFDRLTKLKELRLNTN-QLQSIPAG-AFDKLTNLQTLSLSTN-QLQSVPHGA-FD  176 (251)
T ss_dssp             TTCTTCCEEECCSS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTT-TT
T ss_pred             cccCCCCEEEcCCC--cCCCc-ChhHhccCCcccEEECcCC-cCCccCHH-HcCcCcCCCEEECCCC-cCCccCHHH-Hh
Confidence            44566666666654  33310 1111123566777776665 33311110 1124567777777665 444221111 23


Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      .+++|++|++++++
T Consensus       177 ~l~~L~~L~l~~N~  190 (251)
T 3m19_A          177 RLGKLQTITLFGNQ  190 (251)
T ss_dssp             TCTTCCEEECCSCC
T ss_pred             CCCCCCEEEeeCCc
Confidence            56777777777765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.21  E-value=1.7e-05  Score=60.92  Aligned_cols=37  Identities=19%  Similarity=0.116  Sum_probs=18.1

Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++...- .....+++|++|++++++
T Consensus       180 l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          180 LTELKTLKLDNN-QLKRVPE-GAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CCCcCEEECCCC-cCCcCCH-HHhccccCCCEEEecCCC
Confidence            456666666554 3432111 111245666666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.18  E-value=4.9e-05  Score=66.98  Aligned_cols=61  Identities=30%  Similarity=0.480  Sum_probs=33.6

Q ss_pred             cCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          130 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       130 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      .+++|+.|+++++ .++.. +.. ...+++|++|+++++ .++......+ ..+++|++|++++|.
T Consensus       198 ~l~~L~~L~Ls~n-~l~~~-~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l-~~l~~L~~L~Ls~n~  258 (768)
T 3rgz_A          198 RCVNLEFLDVSSN-NFSTG-IPF-LGDCSALQHLDISGN-KLSGDFSRAI-STCTELKLLNISSNQ  258 (768)
T ss_dssp             TCTTCCEEECCSS-CCCSC-CCB-CTTCCSCCEEECCSS-CCCSCHHHHT-TTCSSCCEEECCSSC
T ss_pred             cCCcCCEEECcCC-cCCCC-Ccc-cccCCCCCEEECcCC-cCCCcccHHH-hcCCCCCEEECCCCc
Confidence            4556666666665 22210 001 234677777777765 5554333333 357777777777765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.17  E-value=2e-05  Score=60.52  Aligned_cols=87  Identities=20%  Similarity=0.166  Sum_probs=43.5

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~  181 (205)
                      ..+++|++|+++++  .++.... .....+++|+.|+++++ .++..... ....+++|++|+++++ .++......+ .
T Consensus       106 ~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~-~  178 (270)
T 2o6q_A          106 DQLVNLAELRLDRN--QLKSLPP-RVFDSLTKLTYLSLGYN-ELQSLPKG-VFDKLTSLKELRLYNN-QLKRVPEGAF-D  178 (270)
T ss_dssp             TTCSSCCEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTT-T
T ss_pred             ccccCCCEEECCCC--ccCeeCH-HHhCcCcCCCEEECCCC-cCCccCHh-HccCCcccceeEecCC-cCcEeChhHh-c
Confidence            44566666666654  2221111 11134566777777665 33321110 1234677777777665 4443211112 2


Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      .+++|++|+++++.
T Consensus       179 ~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          179 KLTELKTLKLDNNQ  192 (270)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             cCCCcCEEECCCCc
Confidence            56778888877764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.16  E-value=0.00039  Score=53.51  Aligned_cols=89  Identities=22%  Similarity=0.299  Sum_probs=60.7

Q ss_pred             HHHhcCCCccEEEecCCCCCCCH-HHHHHHHhcCcccceeeccCCCCCCHH-HHHHHHhcCCCCCEEeecCCCCCCH---
Q 028697           99 SLAPKLTKLQTLVLRQDKPQLED-NAVEAIANSCHDLQDLDLSKSFKLSDR-SLYALAHGCPNLTRLNISGCTSFSD---  173 (205)
Q Consensus        99 ~l~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~it~---  173 (205)
                      .+...+++|+.|+++.+  .++. ..+..+...+++|+.|+|+++ .+++. .+..+. .+ +|++|.++++ .++.   
T Consensus       164 i~~~~l~~L~~L~Ls~N--~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~N-pl~~~~~  237 (267)
T 3rw6_A          164 IIEENIPELLSLNLSNN--RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGN-SLCDTFR  237 (267)
T ss_dssp             HHHHHCTTCCEEECTTS--CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTS-TTGGGCS
T ss_pred             HHHhhCCCCCEEECCCC--CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCC-cCccccC
Confidence            34467899999999997  4443 123334456899999999986 56543 333322 23 8999999987 5653   


Q ss_pred             ---HHHHHHHhcCCCCCeEeccC
Q 028697          174 ---HALAYLCGFCRKLKILNLCG  193 (205)
Q Consensus       174 ---~~l~~l~~~~~~L~~L~l~~  193 (205)
                         .....+...+|+|+.|+-..
T Consensus       238 ~~~~y~~~il~~~P~L~~LDg~~  260 (267)
T 3rw6_A          238 DQSTYISAIRERFPKLLRLDGHE  260 (267)
T ss_dssp             SHHHHHHHHHHHCTTCCEESSCB
T ss_pred             cchhHHHHHHHHCcccCeECCcC
Confidence               34456667899999997554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.16  E-value=2e-05  Score=58.81  Aligned_cols=109  Identities=19%  Similarity=0.166  Sum_probs=63.6

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ..+|++|+++++.. +. .....+..+++|++|+++++  .++. ....+...+++|+.|+++++ .++...... ...+
T Consensus        55 l~~L~~L~Ls~N~i-~~-~~~~~~~~l~~L~~L~Ls~N--~l~~-l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~-~~~l  127 (220)
T 2v9t_B           55 YKKLRRIDLSNNQI-SE-LAPDAFQGLRSLNSLVLYGN--KITE-LPKSLFEGLFSLQLLLLNAN-KINCLRVDA-FQDL  127 (220)
T ss_dssp             CTTCCEEECCSSCC-CE-ECTTTTTTCSSCCEEECCSS--CCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTC
T ss_pred             CCCCCEEECCCCcC-CC-cCHHHhhCCcCCCEEECCCC--cCCc-cCHhHccCCCCCCEEECCCC-CCCEeCHHH-cCCC
Confidence            45678888877542 21 00123456788888888876  3431 11122235678888888876 443221111 2346


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++...-..+ ..+++|++|++++.+
T Consensus       128 ~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          128 HNLNLLSLYDN-KLQTIAKGTF-SPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCC-cCCEECHHHH-hCCCCCCEEEeCCCC
Confidence            78888888776 4543222222 357888888888876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.16  E-value=1.6e-05  Score=60.35  Aligned_cols=109  Identities=20%  Similarity=0.183  Sum_probs=66.1

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ..+|++|+++++.- .. .....+..+++|++|+++++  .++.. .......+++|+.|+++++ .++.-.- .....+
T Consensus        58 l~~L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~L~~n--~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l  130 (251)
T 3m19_A           58 LTKLTWLNLDYNQL-QT-LSAGVFDDLTELGTLGLANN--QLASL-PLGVFDHLTQLDKLYLGGN-QLKSLPS-GVFDRL  130 (251)
T ss_dssp             CTTCCEEECTTSCC-CC-CCTTTTTTCTTCCEEECTTS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred             cccCCEEECCCCcC-Cc-cCHhHhccCCcCCEEECCCC--ccccc-ChhHhcccCCCCEEEcCCC-cCCCcCh-hHhccC
Confidence            46788888887542 21 11123456788999999886  44421 1112245688999999886 4442111 112357


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++.-.-.. ...+++|++|+++++.
T Consensus       131 ~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          131 TKLKELRLNTN-QLQSIPAGA-FDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             TTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             CcccEEECcCC-cCCccCHHH-cCcCcCCCEEECCCCc
Confidence            88999999876 555322112 2367889999998875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.15  E-value=0.00037  Score=55.42  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=36.2

Q ss_pred             cccceeeccCCCCCCHHHHHHH---HhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697          132 HDLQDLDLSKSFKLSDRSLYAL---AHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK  196 (205)
Q Consensus       132 ~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~  196 (205)
                      ..++.+++.+. .+++..+..+   ...+++|++|+++++ .++.- -..+...+++|++|++++++-
T Consensus       249 ~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          249 SLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSV-PDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             CCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred             chhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCcc-CHHHHhcCCCCCEEEeeCCCc
Confidence            33444444443 4555544443   345788888888876 55521 112224678888888888863

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.15  E-value=3.8e-05  Score=65.11  Aligned_cols=13  Identities=15%  Similarity=0.146  Sum_probs=7.8

Q ss_pred             CCCHHHHHHHHhc
Q 028697           45 DIPMELLLRILSL   57 (205)
Q Consensus        45 ~Lp~e~l~~If~~   57 (205)
                      .+|.+.+..+|..
T Consensus       318 ~~p~~~~~~~~~~  330 (562)
T 3a79_B          318 LFSKEALYSVFAE  330 (562)
T ss_dssp             SSCHHHHHHHHHT
T ss_pred             ecChhhhhhhhcc
Confidence            5676666666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.13  E-value=4.7e-05  Score=65.13  Aligned_cols=86  Identities=17%  Similarity=0.124  Sum_probs=38.1

Q ss_pred             HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH
Q 028697          101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC  180 (205)
Q Consensus       101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~  180 (205)
                      ...+++|+.|+++++  .++......+ ..+++|+.|+++++ .++.-  ......+++|++|+++++ .++.  +..-.
T Consensus       250 l~~l~~L~~L~Ls~N--~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L~Ls~N-~l~~--i~~~~  320 (597)
T 3oja_B          250 LLNYPGLVEVDLSYN--ELEKIMYHPF-VKMQRLERLYISNN-RLVAL--NLYGQPIPTLKVLDLSHN-HLLH--VERNQ  320 (597)
T ss_dssp             GGGCTTCSEEECCSS--CCCEEESGGG-TTCSSCCEEECTTS-CCCEE--ECSSSCCTTCCEEECCSS-CCCC--CGGGH
T ss_pred             hccCCCCCEEECCCC--ccCCCCHHHh-cCccCCCEEECCCC-CCCCC--CcccccCCCCcEEECCCC-CCCc--cCccc
Confidence            345666777776664  3332211122 23456666666654 33221  011123456666666554 3331  11111


Q ss_pred             hcCCCCCeEeccCCc
Q 028697          181 GFCRKLKILNLCGCV  195 (205)
Q Consensus       181 ~~~~~L~~L~l~~c~  195 (205)
                      ..+++|++|++++|.
T Consensus       321 ~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          321 PQFDRLENLYLDHNS  335 (597)
T ss_dssp             HHHTTCSEEECCSSC
T ss_pred             ccCCCCCEEECCCCC
Confidence            234555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.13  E-value=2.5e-05  Score=63.10  Aligned_cols=106  Identities=15%  Similarity=0.143  Sum_probs=52.3

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ..+|++|+++++.....  ....+..+++|++|+++++  .++. ....+...+++|+.|+++++ .++...-. ....+
T Consensus        92 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n--~l~~-l~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l  164 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRYL--PPHVFQNVPLLTVLVLERN--DLSS-LPRGIFHNTPKLTTLSMSNN-NLERIEDD-TFQAT  164 (390)
T ss_dssp             CTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSS--CCCC-CCTTTTTTCTTCCEEECCSS-CCCBCCTT-TTSSC
T ss_pred             CCCcCEEECCCCCCCcC--CHHHhcCCCCCCEEECCCC--ccCc-CCHHHhcCCCCCcEEECCCC-ccCccChh-hccCC
Confidence            44566777665432110  0122345667777777665  3331 11111234567777777765 33221110 12345


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++...    ...+++|++|+++++.
T Consensus       165 ~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          165 TSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             TTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSSC
T ss_pred             CCCCEEECCCC-cCCccc----cccccccceeeccccc
Confidence            67777777665 444322    2245666666666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.11  E-value=6.2e-06  Score=70.39  Aligned_cols=12  Identities=33%  Similarity=0.246  Sum_probs=5.3

Q ss_pred             CCCCCEEeecCC
Q 028697          157 CPNLTRLNISGC  168 (205)
Q Consensus       157 ~~~L~~L~l~~~  168 (205)
                      +++|++|+++++
T Consensus       496 l~~L~~L~Ls~N  507 (606)
T 3vq2_A          496 LHRLQLLNMSHN  507 (606)
T ss_dssp             CTTCCEEECCSS
T ss_pred             cccCCEEECCCC
Confidence            344444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.11  E-value=0.00017  Score=61.52  Aligned_cols=104  Identities=21%  Similarity=0.242  Sum_probs=72.2

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ...++.|+++++.- +.  +.. +..+++|+.|+++++  .++ .....+ ..+++|+.|+++++ .++.  +.. ...+
T Consensus       440 ~~~L~~L~Ls~n~l-~~--lp~-~~~l~~L~~L~Ls~N--~l~-~lp~~~-~~l~~L~~L~Ls~N-~l~~--lp~-l~~l  507 (567)
T 1dce_A          440 YADVRVLHLAHKDL-TV--LCH-LEQLLLVTHLDLSHN--RLR-ALPPAL-AALRCLEVLQASDN-ALEN--VDG-VANL  507 (567)
T ss_dssp             HTTCSEEECTTSCC-SS--CCC-GGGGTTCCEEECCSS--CCC-CCCGGG-GGCTTCCEEECCSS-CCCC--CGG-GTTC
T ss_pred             ccCceEEEecCCCC-CC--CcC-ccccccCcEeecCcc--ccc-ccchhh-hcCCCCCEEECCCC-CCCC--Ccc-cCCC
Confidence            34688999998642 22  223 567889999999987  444 111233 35889999999987 5553  222 3458


Q ss_pred             CCCCEEeecCCCCCCHHH-HHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHA-LAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~-l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++... ...+ ..+++|++|+++++.
T Consensus       508 ~~L~~L~Ls~N-~l~~~~~p~~l-~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          508 PRLQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGNS  544 (567)
T ss_dssp             SSCCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTSG
T ss_pred             CCCcEEECCCC-CCCCCCCcHHH-hcCCCCCEEEecCCc
Confidence            99999999887 666532 2333 378999999999987

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.11  E-value=4.6e-05  Score=57.16  Aligned_cols=107  Identities=20%  Similarity=0.081  Sum_probs=70.3

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      .++++|+++++.....  ....+..+++|++|+++++  .++.- .......+++|+.|+++++ .++.-.- .....++
T Consensus        40 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~N--~l~~i-~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~  112 (229)
T 3e6j_A           40 TNAQILYLHDNQITKL--EPGVFDSLINLKELYLGSN--QLGAL-PVGVFDSLTQLTVLDLGTN-QLTVLPS-AVFDRLV  112 (229)
T ss_dssp             TTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred             CCCCEEEcCCCccCcc--CHHHhhCccCCcEEECCCC--CCCCc-ChhhcccCCCcCEEECCCC-cCCccCh-hHhCcch
Confidence            4689999987642211  1134557899999999986  44321 1122245789999999987 5542111 1124578


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .++.  +-.-...+++|++|+++++.
T Consensus       113 ~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A          113 HLKELFMCCN-KLTE--LPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             TCCEEECCSS-CCCS--CCTTGGGCTTCSEEECCSSC
T ss_pred             hhCeEeccCC-cccc--cCcccccCCCCCEEECCCCc
Confidence            9999999886 6662  22222578999999999875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.11  E-value=5.2e-06  Score=70.84  Aligned_cols=88  Identities=19%  Similarity=0.243  Sum_probs=47.6

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~  181 (205)
                      ..+++|++|+++++  .++......+ ..+++|+.|+++++ .+++..+......+++|++|+++++ .++...-..+ .
T Consensus       421 ~~l~~L~~L~l~~n--~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~  494 (606)
T 3vq2_A          421 LSLEKLLYLDISYT--NTKIDFDGIF-LGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVF-D  494 (606)
T ss_dssp             TTCTTCCEEECTTS--CCEECCTTTT-TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT-T
T ss_pred             hccccCCEEECcCC--CCCccchhhh-cCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhhh-c
Confidence            35566666666664  2322111112 34567777777765 3433211112235678888888776 5543222222 3


Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      .+++|++|++++|.
T Consensus       495 ~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          495 TLHRLQLLNMSHNN  508 (606)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             ccccCCEEECCCCc
Confidence            57778888877775

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.10  E-value=2.1e-05  Score=58.75  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=66.9

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ...|++|+++++. ++. .....+..+++|++|+++++  .++.... .....+++|+.|+++++ .++...-.. ...+
T Consensus        56 l~~L~~L~L~~N~-i~~-i~~~~~~~l~~L~~L~Ls~N--~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l  128 (220)
T 2v70_A           56 LPQLRKINFSNNK-ITD-IEEGAFEGASGVNEILLTSN--RLENVQH-KMFKGLESLKTLMLRSN-RITCVGNDS-FIGL  128 (220)
T ss_dssp             CTTCCEEECCSSC-CCE-ECTTTTTTCTTCCEEECCSS--CCCCCCG-GGGTTCSSCCEEECTTS-CCCCBCTTS-STTC
T ss_pred             CCCCCEEECCCCc-CCE-ECHHHhCCCCCCCEEECCCC--ccCccCH-hHhcCCcCCCEEECCCC-cCCeECHhH-cCCC
Confidence            5678888888754 221 00123456788999999886  4432111 11245788999999886 443211111 2357


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK  196 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~  196 (205)
                      ++|++|+++++ .++...-..+ ..+++|++|++++.+-
T Consensus       129 ~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          129 SSVRLLSLYDN-QITTVAPGAF-DTLHSLSTLNLLANPF  165 (220)
T ss_dssp             TTCSEEECTTS-CCCCBCTTTT-TTCTTCCEEECCSCCE
T ss_pred             ccCCEEECCCC-cCCEECHHHh-cCCCCCCEEEecCcCC
Confidence            88999999876 5554221222 3678899999988763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.09  E-value=2.5e-05  Score=56.01  Aligned_cols=108  Identities=20%  Similarity=0.157  Sum_probs=59.5

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      ..+++|+++++.- .. ........+++|++|+++++  .++.- .......+++|+.|+++++ .++...- .....++
T Consensus        28 ~~l~~L~l~~n~l-~~-~~~~~~~~l~~L~~L~l~~n--~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~  100 (177)
T 2o6r_A           28 SSATRLELESNKL-QS-LPHGVFDKLTQLTKLSLSQN--QIQSL-PDGVFDKLTKLTILYLHEN-KLQSLPN-GVFDKLT  100 (177)
T ss_dssp             TTCSEEECCSSCC-CC-CCTTTTTTCTTCSEEECCSS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred             CCCcEEEeCCCcc-cE-eCHHHhcCcccccEEECCCC--cceEe-ChhHccCCCccCEEECCCC-CccccCH-HHhhCCc
Confidence            3567777776532 21 11123356678888888775  33311 1111234678888888875 4432110 1123467


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .++.-. ..+...+++|++|++++++
T Consensus       101 ~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          101 QLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             ccCEEECcCC-cceEeC-HHHhcCCcccCEEEecCCC
Confidence            8888888775 554211 1222357788888888776

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.09  E-value=1.8e-05  Score=59.01  Aligned_cols=108  Identities=18%  Similarity=0.159  Sum_probs=69.4

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      ..+++|++++... .. .....+..+++|+.|+++++  .++......+ ..+++|+.|+++++ .++.-. ..+...++
T Consensus        32 ~~l~~L~l~~n~i-~~-i~~~~~~~l~~L~~L~Ls~N--~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~  104 (220)
T 2v9t_B           32 ETITEIRLEQNTI-KV-IPPGAFSPYKKLRRIDLSNN--QISELAPDAF-QGLRSLNSLVLYGN-KITELP-KSLFEGLF  104 (220)
T ss_dssp             TTCCEEECCSSCC-CE-ECTTSSTTCTTCCEEECCSS--CCCEECTTTT-TTCSSCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred             cCCCEEECCCCcC-CC-cCHhHhhCCCCCCEEECCCC--cCCCcCHHHh-hCCcCCCEEECCCC-cCCccC-HhHccCCC
Confidence            3578899887542 21 00123456789999999986  4543211222 35789999999986 444211 11124578


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .++......+ ..+++|++|+++++.
T Consensus       105 ~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B          105 SLQLLLLNAN-KINCLRVDAF-QDLHNLNLLSLYDNK  139 (220)
T ss_dssp             TCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred             CCCEEECCCC-CCCEeCHHHc-CCCCCCCEEECCCCc
Confidence            9999999886 5654322222 368999999999986

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.08  E-value=2.3e-05  Score=66.78  Aligned_cols=110  Identities=20%  Similarity=0.174  Sum_probs=63.4

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +.+|++|+++++.-...  -...+..+++|++|+++++  .++.-. ......+++|+.|+++++ .++.-.-. ....+
T Consensus        75 l~~L~~L~Ls~N~i~~i--~~~~f~~L~~L~~L~Ls~N--~l~~l~-~~~f~~L~~L~~L~Ls~N-~l~~l~~~-~~~~L  147 (635)
T 4g8a_A           75 FPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGN--PIQSLA-LGAFSGLSSLQKLVAVET-NLASLENF-PIGHL  147 (635)
T ss_dssp             CTTCCEEECTTCCCCEE--CTTTTTTCTTCCEEECTTC--CCCEEC-GGGGTTCTTCCEEECTTS-CCCCSTTC-CCTTC
T ss_pred             CCCCCEEECCCCcCCCc--ChhHhcCCCCCCEEEccCC--cCCCCC-HHHhcCCCCCCEEECCCC-cCCCCChh-hhhcC
Confidence            56778888887642110  0123456788888888876  343211 112245778888888876 33321100 12346


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++...+......+++|++|+++++.
T Consensus       148 ~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          148 KTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             TTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccCeeccccC-ccccCCCchhhccchhhhhhcccCcc
Confidence            78888888776 44432222233467888888888775

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.06  E-value=1.6e-05  Score=63.45  Aligned_cols=111  Identities=16%  Similarity=0.094  Sum_probs=47.4

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +.++++|+++++. ++. .....+..+++|++|+++++  .++.- .......+++|+.|+++++ .++.-........+
T Consensus        75 l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n--~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l  148 (353)
T 2z80_A           75 CVNLQALVLTSNG-INT-IEEDSFSSLGSLEHLDLSYN--YLSNL-SSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHL  148 (353)
T ss_dssp             CTTCCEEECTTSC-CCE-ECTTTTTTCTTCCEEECCSS--CCSSC-CHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTC
T ss_pred             CCCCCEEECCCCc-cCc-cCHhhcCCCCCCCEEECCCC--cCCcC-CHhHhCCCccCCEEECCCC-CCcccCchhhhccC
Confidence            3456666666543 111 00112334566666666654  33321 1111234566666666654 33211000012235


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++..++......+ ..+++|++|+++++.
T Consensus       149 ~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          149 TKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASD  185 (353)
T ss_dssp             TTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETT
T ss_pred             CCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCC
Confidence            5666666655422222111111 235555555555553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.05  E-value=0.00034  Score=62.54  Aligned_cols=87  Identities=15%  Similarity=0.108  Sum_probs=49.8

Q ss_pred             cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCH----HHHHHHH---hcCCCCCEEeecCCCCCCHHH
Q 028697          103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD----RSLYALA---HGCPNLTRLNISGCTSFSDHA  175 (205)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~----~~~~~l~---~~~~~L~~L~l~~~~~it~~~  175 (205)
                      .+++|+.|+++.+  .+.......+ ..+++|+.|+++++..++.    ..+..+.   ..+++|++|+++++ .++  .
T Consensus       489 ~L~~L~~L~Ls~N--~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~  562 (876)
T 4ecn_A          489 NLKDLTDVELYNC--PNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--E  562 (876)
T ss_dssp             GCTTCCEEEEESC--TTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--B
T ss_pred             cCCCCCEEECcCC--CCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--c
Confidence            6777888888775  2222111222 3467788888877632554    2233332   34567778877775 555  2


Q ss_pred             HHH--HHhcCCCCCeEeccCCc
Q 028697          176 LAY--LCGFCRKLKILNLCGCV  195 (205)
Q Consensus       176 l~~--l~~~~~~L~~L~l~~c~  195 (205)
                      +-.  ....+++|++|+++++.
T Consensus       563 ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          563 FPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             CCCHHHHTTCTTCCEEECTTSC
T ss_pred             cCChhhhhcCCCCCEEECCCCC
Confidence            222  23367777777777765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.05  E-value=0.00022  Score=61.47  Aligned_cols=111  Identities=11%  Similarity=0.017  Sum_probs=71.6

Q ss_pred             cCCCceEecCCCCCCCHH----------------HHHHHHh--cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeec
Q 028697           78 CLGLTHLSLSWCKNNMNN----------------LVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDL  139 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~----------------~~~~l~~--~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l  139 (205)
                      +..|++|+++++. ++..                .+..-..  .+++|++|+++++  .+.......+ ..+++|+.|++
T Consensus       205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n--~l~~~~p~~l-~~l~~L~~L~L  280 (636)
T 4eco_A          205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC--PNLTKLPTFL-KALPEMQLINV  280 (636)
T ss_dssp             CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC--TTCSSCCTTT-TTCSSCCEEEC
T ss_pred             ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCC--cCCccChHHH-hcCCCCCEEEC
Confidence            5678999998765 3331                0222233  6889999999986  3332222223 35789999999


Q ss_pred             cCCCCCCH-H---HHHHHH--hcCCCCCEEeecCCCCCCHHHHHH--HHhcCCCCCeEeccCCc
Q 028697          140 SKSFKLSD-R---SLYALA--HGCPNLTRLNISGCTSFSDHALAY--LCGFCRKLKILNLCGCV  195 (205)
Q Consensus       140 ~~~~~l~~-~---~~~~l~--~~~~~L~~L~l~~~~~it~~~l~~--l~~~~~~L~~L~l~~c~  195 (205)
                      +++..++. .   .+..+.  ..+++|++|+++++ .++  .+-.  ....+++|++|+++++.
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCC
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCc
Confidence            99743776 2   222221  23589999999887 666  2322  33478899999999886

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.03  E-value=4e-05  Score=56.03  Aligned_cols=106  Identities=18%  Similarity=0.102  Sum_probs=58.2

Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  159 (205)
                      .+++|++++..- +  .+...+..+++|+.|+++++  .++.-.-..+ ..+++|+.|+++++ .++.-.-.. ...+++
T Consensus        32 ~l~~L~L~~n~i-~--~ip~~~~~l~~L~~L~Ls~N--~i~~i~~~~f-~~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~~  103 (193)
T 2wfh_A           32 DVTELYLDGNQF-T--LVPKELSNYKHLTLIDLSNN--RISTLSNQSF-SNMTQLLTLILSYN-RLRCIPPRT-FDGLKS  103 (193)
T ss_dssp             TCCEEECCSSCC-C--SCCGGGGGCTTCCEEECCSS--CCCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTT-TTTCTT
T ss_pred             CCCEEECCCCcC-c--hhHHHhhcccCCCEEECCCC--cCCEeCHhHc-cCCCCCCEEECCCC-ccCEeCHHH-hCCCCC
Confidence            467777776432 2  11124456778888888775  3432111112 34677888888775 333211111 234678


Q ss_pred             CCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       160 L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      |++|+++++ .++.-.- .....+++|++|++++.+
T Consensus       104 L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          104 LRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCC
Confidence            888888775 4542111 112356778888887765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.03  E-value=2.4e-05  Score=61.52  Aligned_cols=36  Identities=14%  Similarity=0.213  Sum_probs=16.7

Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++.  +......+++|++|++++++
T Consensus       213 l~~L~~L~L~~N-~l~~--l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          213 AAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             GTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEECTTCC
T ss_pred             cCcccEEECcCC-cccc--hhhHhhcCCCCCEEEccCCC
Confidence            455555555554 3331  11112244555555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.00  E-value=7.3e-05  Score=64.68  Aligned_cols=109  Identities=22%  Similarity=0.222  Sum_probs=62.7

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +..+++|+++++.. .. .....+..+++|++|+++++  .++.-.-..+ ..+++|+.|+++++ .++...-.. ...+
T Consensus        48 l~~L~~L~Ls~n~l-~~-~~~~~~~~l~~L~~L~L~~n--~l~~l~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-~~~l  120 (680)
T 1ziw_A           48 YSQLTSLDVGFNTI-SK-LEPELCQKLPMLKVLNLQHN--ELSQLSDKTF-AFCTNLTELHLMSN-SIQKIKNNP-FVKQ  120 (680)
T ss_dssp             GTTCSEEECCSSCC-CC-CCTTHHHHCTTCCEEECCSS--CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCCSCT-TTTC
T ss_pred             CCcCcEEECCCCcc-Cc-cCHHHHhcccCcCEEECCCC--ccCccChhhh-ccCCCCCEEECCCC-ccCccChhH-cccc
Confidence            46778888876532 11 01123456788888888875  3332111112 35778888888876 333211001 2357


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++......+ ..+++|++|+++++.
T Consensus       121 ~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~  156 (680)
T 1ziw_A          121 KNLITLDLSHN-GLSSTKLGTQ-VQLENLQELLLSNNK  156 (680)
T ss_dssp             TTCCEEECCSS-CCSCCCCCSS-SCCTTCCEEECCSSC
T ss_pred             CCCCEEECCCC-cccccCchhh-cccccCCEEEccCCc
Confidence            78888888876 4443222222 367888888888875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=96.97  E-value=5.1e-05  Score=62.89  Aligned_cols=13  Identities=23%  Similarity=0.434  Sum_probs=6.5

Q ss_pred             cCCCccEEEecCC
Q 028697          103 KLTKLQTLVLRQD  115 (205)
Q Consensus       103 ~~~~L~~L~l~~~  115 (205)
                      .+++|++|+++++
T Consensus       102 ~l~~L~~L~Ls~n  114 (477)
T 2id5_A          102 GLSNLTKLDISEN  114 (477)
T ss_dssp             TCTTCCEEECTTS
T ss_pred             CCCCCCEEECCCC
Confidence            3455555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.96  E-value=8e-06  Score=59.68  Aligned_cols=108  Identities=23%  Similarity=0.173  Sum_probs=57.2

Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  159 (205)
                      .+++|++++.. +..-....++..+++|++|+++++  .++......+ ..+++|+.|+++++ .++...... ...+++
T Consensus        30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~  103 (192)
T 1w8a_A           30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN--QLTGIEPNAF-EGASHIQELQLGEN-KIKEISNKM-FLGLHQ  103 (192)
T ss_dssp             TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS--CCCCBCTTTT-TTCTTCCEEECCSC-CCCEECSSS-STTCTT
T ss_pred             CCCEEECCCCc-CCccCCccccccCCCCCEEECCCC--CCCCcCHhHc-CCcccCCEEECCCC-cCCccCHHH-hcCCCC
Confidence            56777776643 211000012456777888888775  3432111122 34677888888775 443211111 134677


Q ss_pred             CCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       160 L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      |++|+++++ .++...-..+ ..+++|++|++++.+
T Consensus       104 L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          104 LKTLNLYDN-QISCVMPGSF-EHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCEEECCSS-CCCEECTTSS-TTCTTCCEEECTTCC
T ss_pred             CCEEECCCC-cCCeeCHHHh-hcCCCCCEEEeCCCC
Confidence            888888775 5543211112 256778888887765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=96.95  E-value=5e-05  Score=59.91  Aligned_cols=36  Identities=11%  Similarity=0.150  Sum_probs=16.7

Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++.  +......+++|++|+++++.
T Consensus       239 l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          239 TPHLRELHLNNN-KLVK--VPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             STTCCEEECCSS-CCSS--CCTTTTTCSSCCEEECCSSC
T ss_pred             CCCCCEEECCCC-cCcc--CChhhccCCCcCEEECCCCc
Confidence            455555555554 3331  11111245556666665554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.95  E-value=3.2e-05  Score=63.60  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=16.6

Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++.  +.. ...+++|++|+++++.
T Consensus       184 l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          184 LSNLRYLNLAMC-NLRE--IPN-LTPLIKLDELDLSGNH  218 (440)
T ss_dssp             CSSCCEEECTTS-CCSS--CCC-CTTCSSCCEEECTTSC
T ss_pred             ccccCeecCCCC-cCcc--ccc-cCCCcccCEEECCCCc
Confidence            455555555544 3331  111 1245566666666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=96.94  E-value=3.1e-05  Score=68.26  Aligned_cols=38  Identities=26%  Similarity=0.451  Sum_probs=18.9

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCC
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS  142 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~  142 (205)
                      ..+++|++|+++++  .++......+ ..+++|+.|+++++
T Consensus       220 ~~l~~L~~L~Ls~n--~l~~~~~~~l-~~l~~L~~L~Ls~n  257 (768)
T 3rgz_A          220 GDCSALQHLDISGN--KLSGDFSRAI-STCTELKLLNISSN  257 (768)
T ss_dssp             TTCCSCCEEECCSS--CCCSCHHHHT-TTCSSCCEEECCSS
T ss_pred             ccCCCCCEEECcCC--cCCCcccHHH-hcCCCCCEEECCCC
Confidence            44556666666654  3433222222 23556666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.93  E-value=1.1e-05  Score=71.84  Aligned_cols=112  Identities=21%  Similarity=0.138  Sum_probs=47.3

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHH-HHhc
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA-LAHG  156 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~-l~~~  156 (205)
                      +.+|++|+++++..... .-...+..+++|+.|+++++  .++......+ ..+++|+.|+++++ .+++..... ....
T Consensus        47 l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N--~l~~~~p~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSS--KIYFLHPDAF-QGLFHLFELRLYFC-GLSDAVLKDGYFRN  121 (844)
T ss_dssp             CCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTC--CCCEECTTSS-CSCSSCCCEECTTC-CCSSCCSTTCCCSS
T ss_pred             cccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCC--cCcccCHhHc-cCCcccCEeeCcCC-CCCcccccCccccc
Confidence            34566666665522110 00112345566666666654  2322111111 23556666666654 333211100 0123


Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++..........+++|++|+++++.
T Consensus       122 L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          122 LKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             CSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             cCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCc
Confidence            555666666554 33322111112245556666655543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.93  E-value=3.3e-05  Score=65.83  Aligned_cols=108  Identities=19%  Similarity=0.161  Sum_probs=70.1

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      ..+++|++++.. ++. .-...+..+++|++|+++++  .++.-. ......+++|+.|+++++ .++.-... ....++
T Consensus        52 ~~~~~LdLs~N~-i~~-l~~~~f~~l~~L~~L~Ls~N--~i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~~~-~f~~L~  124 (635)
T 4g8a_A           52 FSTKNLDLSFNP-LRH-LGSYSFFSFPELQVLDLSRC--EIQTIE-DGAYQSLSHLSTLILTGN-PIQSLALG-AFSGLS  124 (635)
T ss_dssp             TTCCEEECTTSC-CCE-ECTTTTTTCTTCCEEECTTC--CCCEEC-TTTTTTCTTCCEEECTTC-CCCEECGG-GGTTCT
T ss_pred             cCCCEEEeeCCC-CCC-CCHHHHhCCCCCCEEECCCC--cCCCcC-hhHhcCCCCCCEEEccCC-cCCCCCHH-HhcCCC
Confidence            368999998754 221 00123567899999999997  444210 111245789999999997 45421111 134689


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .++.-.-.. ...+++|++|+++++.
T Consensus       125 ~L~~L~Ls~N-~l~~l~~~~-~~~L~~L~~L~Ls~N~  159 (635)
T 4g8a_A          125 SLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNL  159 (635)
T ss_dssp             TCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCC-cCCCCChhh-hhcCcccCeeccccCc
Confidence            9999999987 554321111 2478999999999986

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=96.90  E-value=2.5e-05  Score=60.04  Aligned_cols=108  Identities=20%  Similarity=0.144  Sum_probs=69.6

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      ..+++|+++++.- +.- ....+..+++|++|+++++  .++......+ ..+++|+.|+++++ .++...... ...++
T Consensus        28 ~~l~~L~ls~n~l-~~~-~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~  100 (276)
T 2z62_A           28 FSTKNLDLSFNPL-RHL-GSYSFFSFPELQVLDLSRC--EIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALGA-FSGLS  100 (276)
T ss_dssp             TTCCEEECTTCCC-CEE-CTTTTTTCTTCSEEECTTC--CCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTT-TTTCT
T ss_pred             CCccEEECCCCcc-ccc-CHhHhccccCCcEEECCCC--cCCccCHHHc-cCCcCCCEEECCCC-ccCccChhh-hcCCc
Confidence            3689999987642 211 0123456899999999986  4443211122 45789999999986 444322111 24578


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .++...-.. ...+++|++|+++++.
T Consensus       101 ~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~  135 (276)
T 2z62_A          101 SLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNL  135 (276)
T ss_dssp             TCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSC
T ss_pred             cccEEECCCC-CccccCchh-cccCCCCCEEECcCCc
Confidence            9999999886 444322111 2368999999999986

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=96.89  E-value=0.00029  Score=62.96  Aligned_cols=107  Identities=19%  Similarity=0.136  Sum_probs=59.3

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCC-CCH-HHHHHHH------hcCcccceeeccCCCCCCHHH
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQ-LED-NAVEAIA------NSCHDLQDLDLSKSFKLSDRS  149 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-~~~-~~l~~l~------~~~~~L~~L~l~~~~~l~~~~  149 (205)
                      +.+|++|+++++.....  +...+..+++|+.|+++.+  . ++. .....+.      ..+++|+.|+++++ .++  .
T Consensus       490 L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N--~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~  562 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACN--RGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--E  562 (876)
T ss_dssp             CTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTC--TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--B
T ss_pred             CCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCC--CCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--c
Confidence            45677888876542111  1133456778888888775  3 554 2222222      23357888887775 444  2


Q ss_pred             HHH--HHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          150 LYA--LAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       150 ~~~--l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +..  ....+++|++|+++++ .++  .+. ....+++|++|+++++.
T Consensus       563 ip~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          563 FPASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             CCCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSSC
T ss_pred             cCChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCCc
Confidence            211  2345677777777765 454  222 22356666777766664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.89  E-value=5.5e-05  Score=64.73  Aligned_cols=106  Identities=16%  Similarity=0.160  Sum_probs=49.6

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +..|++|+++++.- +. .....+..+++|+.|+++++  .++. ....+...+++|+.|+++++ .++...-.. ...+
T Consensus        98 l~~L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~L~~n--~l~~-l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l  170 (597)
T 3oja_B           98 AHTIQKLYMGFNAI-RY-LPPHVFQNVPLLTVLVLERN--DLSS-LPRGIFHNTPKLTTLSMSNN-NLERIEDDT-FQAT  170 (597)
T ss_dssp             CTTCCEEECCSSCC-CC-CCTTTTTTCTTCCEEECCSS--CCCC-CCTTTTTTCTTCCEEECCSS-CCCBCCTTT-TTTC
T ss_pred             CCCCCEEECCCCcC-CC-CCHHHHcCCCCCCEEEeeCC--CCCC-CCHHHhccCCCCCEEEeeCC-cCCCCChhh-hhcC
Confidence            34566666665431 11 01122345566666666664  3331 11111234566677766665 332211111 1335


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++...    ...+++|++|+++++.
T Consensus       171 ~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          171 TSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             TTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSSC
T ss_pred             CcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccCc
Confidence            66777777665 444322    1245566666655553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=96.87  E-value=5.8e-05  Score=59.33  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=43.3

Q ss_pred             cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhc
Q 028697          103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF  182 (205)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~  182 (205)
                      .+++|++|+++++  .++......+...+++|+.|+++++ .++...  . ...+++|++|+++++ .++.-.- . ...
T Consensus       142 ~l~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~-~~~l~~L~~L~Ls~N-~l~~l~~-~-~~~  212 (317)
T 3o53_A          142 CRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQYN-FIYDVK--G-QVVFAKLKTLDLSSN-KLAFMGP-E-FQS  212 (317)
T ss_dssp             GGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTTS-CCCEEE--C-CCCCTTCCEEECCSS-CCCEECG-G-GGG
T ss_pred             ccCCCCEEECCCC--CCCcccHHHHhhccCcCCEEECCCC-cCcccc--c-ccccccCCEEECCCC-cCCcchh-h-hcc
Confidence            3456666666654  3433222233334566666666665 333210  0 012567777777665 4542111 1 235


Q ss_pred             CCCCCeEeccCCc
Q 028697          183 CRKLKILNLCGCV  195 (205)
Q Consensus       183 ~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++.
T Consensus       213 l~~L~~L~L~~N~  225 (317)
T 3o53_A          213 AAGVTWISLRNNK  225 (317)
T ss_dssp             GTTCSEEECTTSC
T ss_pred             cCcccEEECcCCc
Confidence            6777777777765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=96.87  E-value=4.3e-05  Score=63.02  Aligned_cols=14  Identities=21%  Similarity=0.114  Sum_probs=7.8

Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      .+++|++|+++++.
T Consensus       216 ~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          216 PLVGLEELEMSGNH  229 (452)
T ss_dssp             TCTTCCEEECTTSC
T ss_pred             ccccccEEECcCCc
Confidence            44556666665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.85  E-value=0.00018  Score=61.34  Aligned_cols=104  Identities=24%  Similarity=0.306  Sum_probs=70.2

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +.+|+.|+++++. ++  .+...+..+++|+.|+++++  .++.  +..+ ..+++|+.|+++++ .++..........+
T Consensus       462 l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N--~l~~--lp~l-~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l  532 (567)
T 1dce_A          462 LLLVTHLDLSHNR-LR--ALPPALAALRCLEVLQASDN--ALEN--VDGV-ANLPRLQELLLCNN-RLQQSAAIQPLVSC  532 (567)
T ss_dssp             GTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSS--CCCC--CGGG-TTCSSCCEEECCSS-CCCSSSTTGGGGGC
T ss_pred             cccCcEeecCccc-cc--ccchhhhcCCCCCEEECCCC--CCCC--Cccc-CCCCCCcEEECCCC-CCCCCCCcHHHhcC
Confidence            4579999999864 22  12234567899999999997  4553  2233 45899999999987 55433101113468


Q ss_pred             CCCCEEeecCCCCCCHH--HHHHHHhcCCCCCeEec
Q 028697          158 PNLTRLNISGCTSFSDH--ALAYLCGFCRKLKILNL  191 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~--~l~~l~~~~~~L~~L~l  191 (205)
                      ++|++|+++++ .++..  ....+...+|+|+.|++
T Consensus       533 ~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          533 PRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            99999999887 55432  23345556899999864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.85  E-value=4.2e-05  Score=62.89  Aligned_cols=37  Identities=22%  Similarity=0.019  Sum_probs=17.5

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQD  115 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  115 (205)
                      +.+|++|+++++..+..- ....+..+++|++|+++++
T Consensus       159 l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             CTTCCEEECCCCTTCCEE-CTTTTTTCSSCCEEECTTS
T ss_pred             CcccCEeCCCCCCCccee-CcchhhcccccCeecCCCC
Confidence            345666666654332210 0112334556666666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.85  E-value=0.00034  Score=57.94  Aligned_cols=55  Identities=20%  Similarity=0.150  Sum_probs=26.2

Q ss_pred             CcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       131 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|+.|+++++ .++.-.    ...+++|++|+++++ .++.-   . ...+++|++|++++|.
T Consensus       105 l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l---~-l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          105 LTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN-TLTEI---D-VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             CTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS-CCSCC---C-CTTCTTCCEEECTTCS
T ss_pred             CCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC-cccee---c-cccCCcCCEEECCCCC
Confidence            455555555554 332211    233455666665554 34331   1 2245666666666664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.85  E-value=0.0004  Score=57.52  Aligned_cols=98  Identities=18%  Similarity=0.087  Sum_probs=48.6

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ...+++|+++++.-...    . ...+++|++|+++++  .++.-   .+ ..+++|+.|+++++ .++.-.    ...+
T Consensus        84 l~~L~~L~Ls~N~l~~~----~-~~~l~~L~~L~L~~N--~l~~l---~~-~~l~~L~~L~l~~N-~l~~l~----l~~l  147 (457)
T 3bz5_A           84 NTNLTYLACDSNKLTNL----D-VTPLTKLTYLNCDTN--KLTKL---DV-SQNPLLTYLNCARN-TLTEID----VSHN  147 (457)
T ss_dssp             CTTCSEEECCSSCCSCC----C-CTTCTTCCEEECCSS--CCSCC---CC-TTCTTCCEEECTTS-CCSCCC----CTTC
T ss_pred             CCCCCEEECcCCCCcee----e-cCCCCcCCEEECCCC--cCCee---cC-CCCCcCCEEECCCC-ccceec----cccC
Confidence            34556666655432111    1 335566666666664  33321   12 34566666666665 333311    2345


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++..++...    ...+++|++|+++++.
T Consensus       148 ~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          148 TQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             TTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSC
T ss_pred             CcCCEEECCCCCcccccc----cccCCcCCEEECCCCc
Confidence            666666666653333221    1245666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=96.83  E-value=0.00012  Score=57.61  Aligned_cols=37  Identities=27%  Similarity=0.168  Sum_probs=15.9

Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++......+ ..+++|++|+++++.
T Consensus       215 l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          215 LNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNNK  251 (330)
T ss_dssp             CTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSSC
T ss_pred             CCCCCEEECCCC-cCceeChhhc-cCCCCCCEEECCCCc
Confidence            455555555544 3332211111 234555555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=96.82  E-value=6.1e-05  Score=62.14  Aligned_cols=37  Identities=24%  Similarity=0.126  Sum_probs=17.5

Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++.... .....+++|++|++++.+
T Consensus       265 l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          265 LASLVELNLAHN-NLSSLPH-DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CTTCCEEECCSS-CCSCCCT-TSSTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCC-cCCccCh-HHhccccCCCEEEccCCC
Confidence            455666666554 3332111 111245566666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=96.80  E-value=0.0061  Score=51.11  Aligned_cols=90  Identities=16%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHH--HhcCCCCCEEeecCCCCCCHHH-HH
Q 028697          101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYAL--AHGCPNLTRLNISGCTSFSDHA-LA  177 (205)
Q Consensus       101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~it~~~-l~  177 (205)
                      ....++|+.|+++.+  .++. .-..+...+++|+.|+++++ .+++......  ...+++|++|+++++ .++.-. ..
T Consensus       306 ~~~~~~L~~L~l~~n--~l~~-ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~  380 (549)
T 2z81_A          306 YSLLEKVKRITVENS--KVFL-VPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTG  380 (549)
T ss_dssp             HHHSTTCCEEEEESS--CCCC-CCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHH
T ss_pred             hhhcccceEEEeccC--cccc-CCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccch
Confidence            344578888888886  3331 11233346899999999997 7776544321  245799999999997 666432 22


Q ss_pred             HHHhcCCCCCeEeccCCc
Q 028697          178 YLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       178 ~l~~~~~~L~~L~l~~c~  195 (205)
                      .....+++|++|++++|.
T Consensus       381 ~~~~~l~~L~~L~Ls~N~  398 (549)
T 2z81_A          381 EILLTLKNLTSLDISRNT  398 (549)
T ss_dssp             HHGGGCTTCCEEECTTCC
T ss_pred             hhhhcCCCCCEEECCCCC
Confidence            345589999999999985

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.69  E-value=7e-05  Score=64.78  Aligned_cols=110  Identities=23%  Similarity=0.101  Sum_probs=69.3

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +..|++|+++++.- +. .....+..+++|++|+++++  .++.-....+ ..+++|+.|+++++ .++...... ...+
T Consensus        72 l~~L~~L~L~~n~l-~~-l~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l  144 (680)
T 1ziw_A           72 LPMLKVLNLQHNEL-SQ-LSDKTFAFCTNLTELHLMSN--SIQKIKNNPF-VKQKNLITLDLSHN-GLSSTKLGT-QVQL  144 (680)
T ss_dssp             CTTCCEEECCSSCC-CC-CCTTTTTTCTTCSEEECCSS--CCCCCCSCTT-TTCTTCCEEECCSS-CCSCCCCCS-SSCC
T ss_pred             ccCcCEEECCCCcc-Cc-cChhhhccCCCCCEEECCCC--ccCccChhHc-cccCCCCEEECCCC-cccccCchh-hccc
Confidence            57899999987642 21 00123457899999999986  3432111122 35789999999987 443321111 1357


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHH-hcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLC-GFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~-~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++......+. ..+++|++|+++++.
T Consensus       145 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          145 ENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             TTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             ccCCEEEccCC-cccccCHHHhhccccccccEEECCCCc
Confidence            89999999886 45433222222 246899999999885

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.68  E-value=7.3e-05  Score=62.47  Aligned_cols=36  Identities=14%  Similarity=0.213  Sum_probs=16.6

Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++.  +......+++|++|++++++
T Consensus       213 l~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          213 AAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             GTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEECTTCC
T ss_pred             CCCccEEEecCC-cCcc--cchhhccCCCCCEEEcCCCC
Confidence            455555555554 3331  11112234555666665554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=96.67  E-value=0.00033  Score=60.41  Aligned_cols=108  Identities=16%  Similarity=0.120  Sum_probs=66.2

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCC-CCH-HHHHHHHh-----cCcccceeeccCCCCCCHHHH
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQ-LED-NAVEAIAN-----SCHDLQDLDLSKSFKLSDRSL  150 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-~~~-~~l~~l~~-----~~~~L~~L~l~~~~~l~~~~~  150 (205)
                      +.+|++|+++++....  .+......+++|++|+++++  . ++. .....+..     .+++|+.|+++++ .++  .+
T Consensus       248 l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n--~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~i  320 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACN--RGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TF  320 (636)
T ss_dssp             CTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECTTC--TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SC
T ss_pred             cCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECcCC--CCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--cc
Confidence            5678899998764221  11133456789999999986  4 666 44444443     2488999999886 554  22


Q ss_pred             HH--HHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          151 YA--LAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       151 ~~--l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ..  ....+++|++|+++++ .++.. +.. ...+++|++|+++++.
T Consensus       321 p~~~~l~~l~~L~~L~L~~N-~l~g~-ip~-~~~l~~L~~L~L~~N~  364 (636)
T 4eco_A          321 PVETSLQKMKKLGMLECLYN-QLEGK-LPA-FGSEIKLASLNLAYNQ  364 (636)
T ss_dssp             CCHHHHTTCTTCCEEECCSC-CCEEE-CCC-CEEEEEESEEECCSSE
T ss_pred             CchhhhccCCCCCEEeCcCC-cCccc-hhh-hCCCCCCCEEECCCCc
Confidence            22  3346788999998876 45411 111 1245666677666664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=96.67  E-value=0.0001  Score=61.05  Aligned_cols=14  Identities=21%  Similarity=0.012  Sum_probs=7.2

Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      .+++|++|++++++
T Consensus       318 ~l~~L~~L~l~~N~  331 (477)
T 2id5_A          318 SVGNLETLILDSNP  331 (477)
T ss_dssp             CGGGCCEEECCSSC
T ss_pred             CCcccCEEEccCCC
Confidence            34555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.66  E-value=0.00011  Score=61.31  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=43.1

Q ss_pred             cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhc
Q 028697          103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF  182 (205)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~  182 (205)
                      .+++|+.|+++++  .++......+...+++|+.|+++++ .++...  . ...+++|++|+++++ .++.-.- . ...
T Consensus       142 ~l~~L~~L~Ls~N--~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~--~-~~~l~~L~~L~Ls~N-~l~~~~~-~-~~~  212 (487)
T 3oja_A          142 CRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQYN-FIYDVK--G-QVVFAKLKTLDLSSN-KLAFMGP-E-FQS  212 (487)
T ss_dssp             GGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTTS-CCCEEE--C-CCCCTTCCEEECCSS-CCCEECG-G-GGG
T ss_pred             CCCCCCEEECCCC--CCCCcChHHHhhhCCcccEEecCCC-cccccc--c-cccCCCCCEEECCCC-CCCCCCH-h-HcC
Confidence            3556666666654  3443222333334566666666665 333210  0 012566777777665 4543111 1 235


Q ss_pred             CCCCCeEeccCCc
Q 028697          183 CRKLKILNLCGCV  195 (205)
Q Consensus       183 ~~~L~~L~l~~c~  195 (205)
                      +++|++|+++++.
T Consensus       213 l~~L~~L~Ls~N~  225 (487)
T 3oja_A          213 AAGVTWISLRNNK  225 (487)
T ss_dssp             GTTCSEEECTTSC
T ss_pred             CCCccEEEecCCc
Confidence            6777777777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.64  E-value=0.0001  Score=64.58  Aligned_cols=105  Identities=24%  Similarity=0.182  Sum_probs=67.6

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ...|+.|+++++....   +..-...+++|++|+|+++  .++ ..-..+ ..+++|+.|+|+++ .++  .+-.-...+
T Consensus       223 l~~L~~L~Ls~n~l~~---l~~~~~~l~~L~~L~Ls~N--~l~-~lp~~~-~~l~~L~~L~Ls~N-~l~--~lp~~~~~l  292 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFN---ISANIFKYDFLTRLYLNGN--SLT-ELPAEI-KNLSNLRVLDLSHN-RLT--SLPAELGSC  292 (727)
T ss_dssp             CCCCCEEECTTSCCSC---CCGGGGGCCSCSCCBCTTS--CCS-CCCGGG-GGGTTCCEEECTTS-CCS--SCCSSGGGG
T ss_pred             CCCCcEEECCCCCCCC---CChhhcCCCCCCEEEeeCC--cCc-ccChhh-hCCCCCCEEeCcCC-cCC--ccChhhcCC
Confidence            4568899998765321   1111226889999999986  444 111223 45789999999987 454  111112457


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++.  +-.-...+++|++|+++++.
T Consensus       293 ~~L~~L~L~~N-~l~~--lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          293 FQLKYFYFFDN-MVTT--LPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             TTCSEEECCSS-CCCC--CCSSTTSCTTCCCEECTTSC
T ss_pred             CCCCEEECCCC-CCCc--cChhhhcCCCccEEeCCCCc
Confidence            89999999886 5542  21113468899999999887

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=96.63  E-value=7.7e-05  Score=58.02  Aligned_cols=87  Identities=21%  Similarity=0.221  Sum_probs=42.8

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~  181 (205)
                      ..+++|+.|+++++  .++.-.. .....+++|+.|+++++ .++.-.. .+...+++|++|+++++ .++.-. ..+..
T Consensus        97 ~~l~~L~~L~l~~N--~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~  169 (290)
T 1p9a_G           97 QTLPALTVLDVSFN--RLTSLPL-GALRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANN-NLTELP-AGLLN  169 (290)
T ss_dssp             TTCTTCCEEECCSS--CCCCCCS-STTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCSCCC-TTTTT
T ss_pred             ccCCCCCEEECCCC--cCcccCH-HHHcCCCCCCEEECCCC-CCCccCh-hhcccccCCCEEECCCC-cCCccC-HHHhc
Confidence            34566666666664  3331100 11124566777777665 3331110 11234567777777665 444211 11123


Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      .+++|++|+++++.
T Consensus       170 ~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          170 GLENLDTLLLQENS  183 (290)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CcCCCCEEECCCCc
Confidence            56777777777765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.61  E-value=9.6e-05  Score=55.06  Aligned_cols=108  Identities=13%  Similarity=0.122  Sum_probs=68.1

Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  159 (205)
                      .+++|+++++. ++.-.....+..+++|+.|+++++  .++.-.-..+ ..+++|+.|+++++ .++...-. ....+++
T Consensus        33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N--~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~  106 (220)
T 2v70_A           33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN--KITDIEEGAF-EGASGVNEILLTSN-RLENVQHK-MFKGLES  106 (220)
T ss_dssp             TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS--CCCEECTTTT-TTCTTCCEEECCSS-CCCCCCGG-GGTTCSS
T ss_pred             CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC--cCCEECHHHh-CCCCCCCEEECCCC-ccCccCHh-HhcCCcC
Confidence            45788887754 221100123567899999999986  4543211122 35789999999986 44322111 1245899


Q ss_pred             CCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       160 L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      |++|+++++ .++...-..+ ..+++|++|+++++.
T Consensus       107 L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~  140 (220)
T 2v70_A          107 LKTLMLRSN-RITCVGNDSF-IGLSSVRLLSLYDNQ  140 (220)
T ss_dssp             CCEEECTTS-CCCCBCTTSS-TTCTTCSEEECTTSC
T ss_pred             CCEEECCCC-cCCeECHhHc-CCCccCCEEECCCCc
Confidence            999999887 5553221222 368999999999986

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.58  E-value=0.00024  Score=60.15  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=16.9

Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcC-CCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFC-RKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~-~~L~~L~l~~c~  195 (205)
                      +++|++|+++++ .++...    .... ++|++|+++++.
T Consensus       427 l~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N~  461 (562)
T 3a79_B          427 AESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNNR  461 (562)
T ss_dssp             CTTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSSC
T ss_pred             cccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCCc
Confidence            455555555554 444211    1122 466666666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=96.58  E-value=8.2e-05  Score=57.87  Aligned_cols=86  Identities=22%  Similarity=0.222  Sum_probs=35.7

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~  181 (205)
                      ..+++|++|+++++  .++.- .......+++|+.|+++++ .++.-.- .+...+++|++|+++++ .++.  +..-..
T Consensus       121 ~~l~~L~~L~L~~N--~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~--ip~~~~  192 (290)
T 1p9a_G          121 RGLGELQELYLKGN--ELKTL-PPGLLTPTPKLEKLSLANN-NLTELPA-GLLNGLENLDTLLLQEN-SLYT--IPKGFF  192 (290)
T ss_dssp             TTCTTCCEEECTTS--CCCCC-CTTTTTTCTTCCEEECTTS-CCSCCCT-TTTTTCTTCCEEECCSS-CCCC--CCTTTT
T ss_pred             cCCCCCCEEECCCC--CCCcc-ChhhcccccCCCEEECCCC-cCCccCH-HHhcCcCCCCEEECCCC-cCCc--cChhhc
Confidence            34556666666554  22210 0111123455666666554 2321000 11123456666666554 3331  111111


Q ss_pred             cCCCCCeEeccCCc
Q 028697          182 FCRKLKILNLCGCV  195 (205)
Q Consensus       182 ~~~~L~~L~l~~c~  195 (205)
                      ..++|+++++.+.+
T Consensus       193 ~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          193 GSHLLPFAFLHGNP  206 (290)
T ss_dssp             TTCCCSEEECCSCC
T ss_pred             ccccCCeEEeCCCC
Confidence            33456666665544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.55  E-value=9.4e-05  Score=59.27  Aligned_cols=110  Identities=19%  Similarity=0.099  Sum_probs=51.8

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ..+|++|+++++.- +.- ....+..+++|++|+++++  .++.- .......+++|+.|+++++ .++...-.. ...+
T Consensus        63 l~~L~~L~L~~N~i-~~i-~~~~~~~l~~L~~L~Ls~N--~l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l  135 (361)
T 2xot_A           63 LTNLHSLLLSHNHL-NFI-SSEAFVPVPNLRYLDLSSN--HLHTL-DEFLFSDLQALEVLLLYNN-HIVVVDRNA-FEDM  135 (361)
T ss_dssp             CTTCCEEECCSSCC-CEE-CTTTTTTCTTCCEEECCSS--CCCEE-CTTTTTTCTTCCEEECCSS-CCCEECTTT-TTTC
T ss_pred             ccccCEEECCCCcC-Ccc-ChhhccCCCCCCEEECCCC--cCCcC-CHHHhCCCcCCCEEECCCC-cccEECHHH-hCCc
Confidence            35567777765432 110 0112345667777777765  33321 0111234567777777765 333211011 1345


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHH--hcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLC--GFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~--~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++.-....+.  ..+++|++|+++++.
T Consensus       136 ~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          136 AQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             TTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             ccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            66777777665 44431111110  246667777776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.54  E-value=4.4e-05  Score=61.23  Aligned_cols=107  Identities=22%  Similarity=0.142  Sum_probs=68.4

Q ss_pred             CCceEecCCCCCCCHHHHHHHHh-cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAP-KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      .++.|+++++. ++.-. ...+. .+++|+.|+++.+  .++.-.-..+ ..+++|+.|+++++ .++.-.- .....++
T Consensus        40 ~l~~L~Ls~N~-l~~l~-~~~~~~~l~~L~~L~L~~N--~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~  112 (361)
T 2xot_A           40 YTALLDLSHNN-LSRLR-AEWTPTRLTNLHSLLLSHN--HLNFISSEAF-VPVPNLRYLDLSSN-HLHTLDE-FLFSDLQ  112 (361)
T ss_dssp             TCSEEECCSSC-CCEEC-TTSSSSCCTTCCEEECCSS--CCCEECTTTT-TTCTTCCEEECCSS-CCCEECT-TTTTTCT
T ss_pred             CCCEEECCCCC-CCccC-hhhhhhcccccCEEECCCC--cCCccChhhc-cCCCCCCEEECCCC-cCCcCCH-HHhCCCc
Confidence            46888888754 22210 11233 7899999999986  4543211122 35789999999986 4542111 1124578


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .++...-..+ ..+++|++|+++++.
T Consensus       113 ~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~L~~N~  147 (361)
T 2xot_A          113 ALEVLLLYNN-HIVVVDRNAF-EDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             TCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC
T ss_pred             CCCEEECCCC-cccEECHHHh-CCcccCCEEECCCCc
Confidence            9999999887 6654222222 368999999999886

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=96.47  E-value=2e-05  Score=61.94  Aligned_cols=110  Identities=17%  Similarity=0.144  Sum_probs=51.3

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ...|++|+++++..+... +...+..+++|++|+++++  .++......+ ..+++|+.|+++++ .++...-. ....+
T Consensus        75 l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~-~~l~~L~~L~Ls~N-~l~~~~p~-~~~~l  148 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHT--NVSGAIPDFL-SQIKTLVTLDFSYN-ALSGTLPP-SISSL  148 (313)
T ss_dssp             CTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEE--CCEEECCGGG-GGCTTCCEEECCSS-EEESCCCG-GGGGC
T ss_pred             CCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCC--eeCCcCCHHH-hCCCCCCEEeCCCC-ccCCcCCh-HHhcC
Confidence            456677777631111110 1112345677777777664  3331111122 24567777777665 22211000 11345


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCC-CCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCR-KLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~-~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .++...-..+. .++ +|++|+++++.
T Consensus       149 ~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          149 PNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRNR  185 (313)
T ss_dssp             TTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSSE
T ss_pred             CCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCCe
Confidence            67777777665 44322112222 333 66666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.26  E-value=0.0028  Score=48.73  Aligned_cols=83  Identities=25%  Similarity=0.272  Sum_probs=57.7

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHH-HHHHHHhcCcccceeeccCCCCCCH------HHH
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDN-AVEAIANSCHDLQDLDLSKSFKLSD------RSL  150 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~~l~~------~~~  150 (205)
                      .+.|+.|+|++..-..-..+......+++|+.|+|+++  .+++. .+..+. .+ +|+.|.+.++. +..      ...
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N--~i~~~~~l~~l~-~l-~L~~L~L~~Np-l~~~~~~~~~y~  243 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN--ELKSERELDKIK-GL-KLEELWLDGNS-LCDTFRDQSTYI  243 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS--CCCSGGGGGGGT-TS-CCSEEECTTST-TGGGCSSHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC--ccCCchhhhhcc-cC-CcceEEccCCc-CccccCcchhHH
Confidence            67899999998754332333446678999999999986  55542 233332 23 89999999874 432      344


Q ss_pred             HHHHhcCCCCCEEee
Q 028697          151 YALAHGCPNLTRLNI  165 (205)
Q Consensus       151 ~~l~~~~~~L~~L~l  165 (205)
                      ..+...+|+|+.|+=
T Consensus       244 ~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHCTTCCEESS
T ss_pred             HHHHHHCcccCeECC
Confidence            557778999999984

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.26  E-value=0.00024  Score=63.26  Aligned_cols=86  Identities=22%  Similarity=0.118  Sum_probs=41.6

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHH-HHhcCcccceeeccCCCCCCHHHHHHHHhc
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEA-IANSCHDLQDLDLSKSFKLSDRSLYALAHG  156 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~-l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~  156 (205)
                      +.+|++|+++++.-...  ....+..+++|++|+++.+  .+++..+.. ....+++|+.|+++++ .++..........
T Consensus        72 L~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~  146 (844)
T 3j0a_A           72 LPNLRILDLGSSKIYFL--HPDAFQGLFHLFELRLYFC--GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGK  146 (844)
T ss_dssp             CTTCCEEECTTCCCCEE--CTTSSCSCSSCCCEECTTC--CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGT
T ss_pred             CCCCCEEECCCCcCccc--CHhHccCCcccCEeeCcCC--CCCcccccCccccccCCCCEEECCCC-cccccccchhHhh
Confidence            44567777766532110  1123345667777777665  333211111 1124566777777665 3332111111234


Q ss_pred             CCCCCEEeecCC
Q 028697          157 CPNLTRLNISGC  168 (205)
Q Consensus       157 ~~~L~~L~l~~~  168 (205)
                      +++|++|+++++
T Consensus       147 L~~L~~L~Ls~N  158 (844)
T 3j0a_A          147 LNSLKSIDFSSN  158 (844)
T ss_dssp             CSSCCEEEEESS
T ss_pred             CCCCCEEECCCC
Confidence            666777777664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.26  E-value=0.00017  Score=56.91  Aligned_cols=108  Identities=19%  Similarity=0.125  Sum_probs=54.0

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      ..+++|+++++.....  .......+++|+.|+++++  .++......+ ..+++|+.|+++++ .++.  +..-...++
T Consensus       193 ~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~L~~N--~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~--lp~~l~~l~  264 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAI--ELEDLLRYSKLYRLGLGHN--QIRMIENGSL-SFLPTLRELHLDNN-KLSR--VPAGLPDLK  264 (332)
T ss_dssp             SSCSCCBCCSSCCCCC--CTTSSTTCTTCSCCBCCSS--CCCCCCTTGG-GGCTTCCEEECCSS-CCCB--CCTTGGGCT
T ss_pred             CCCCEEECCCCcCCcc--CHHHhcCCCCCCEEECCCC--cCCcCChhHh-hCCCCCCEEECCCC-cCee--cChhhhcCc
Confidence            4567777766432110  0112345667777777765  3332111112 34667777777765 3431  111123467


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhc-----CCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGF-----CRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~-----~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .++......+...     .+.|++|++.+++
T Consensus       265 ~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          265 LLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             TCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             cCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence            7777777665 4554332222211     3556777777665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.22  E-value=0.00036  Score=50.86  Aligned_cols=84  Identities=20%  Similarity=0.153  Sum_probs=56.5

Q ss_pred             CCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcC
Q 028697          104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC  183 (205)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~  183 (205)
                      .+++++|+++++  .++.  +......+++|+.|+++++ .++...-.. ...+++|++|+++++ .++.-.-..+ ..+
T Consensus        30 ~~~l~~L~L~~n--~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~~~f-~~l  101 (193)
T 2wfh_A           30 PRDVTELYLDGN--QFTL--VPKELSNYKHLTLIDLSNN-RISTLSNQS-FSNMTQLLTLILSYN-RLRCIPPRTF-DGL  101 (193)
T ss_dssp             CTTCCEEECCSS--CCCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCBCCTTTT-TTC
T ss_pred             CCCCCEEECCCC--cCch--hHHHhhcccCCCEEECCCC-cCCEeCHhH-ccCCCCCCEEECCCC-ccCEeCHHHh-CCC
Confidence            368999999986  4442  1122246789999999986 454321111 245789999999886 5654322222 368


Q ss_pred             CCCCeEeccCCc
Q 028697          184 RKLKILNLCGCV  195 (205)
Q Consensus       184 ~~L~~L~l~~c~  195 (205)
                      ++|++|+++++.
T Consensus       102 ~~L~~L~L~~N~  113 (193)
T 2wfh_A          102 KSLRLLSLHGND  113 (193)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CCCCEEECCCCC
Confidence            999999999976

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.04  E-value=0.00035  Score=49.84  Aligned_cols=62  Identities=21%  Similarity=0.242  Sum_probs=27.4

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCC
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC  168 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~  168 (205)
                      ..+++|+.|+++++  .++. ........+++|+.|+++++ .++.-.- .....+++|++|+++++
T Consensus        51 ~~l~~L~~L~Ls~N--~l~~-l~~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           51 DRLTQLTRLDLDNN--QLTV-LPAGVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTCTTCSEEECCSS--CCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred             cCcccCCEEECCCC--CcCc-cChhhccCCCCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCC
Confidence            34556666666654  2321 01111123556666666654 2321100 01123556666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.01  E-value=0.00043  Score=49.44  Aligned_cols=85  Identities=16%  Similarity=0.125  Sum_probs=56.0

Q ss_pred             CCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcC
Q 028697          104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC  183 (205)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~  183 (205)
                      .++|++|+++++  .++.. .......+++|+.|+++++ .++...- .....+++|++|+++++ .++...- .....+
T Consensus        27 ~~~l~~L~l~~n--~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l   99 (177)
T 2o6r_A           27 PSSATRLELESN--KLQSL-PHGVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHEN-KLQSLPN-GVFDKL   99 (177)
T ss_dssp             CTTCSEEECCSS--CCCCC-CTTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred             CCCCcEEEeCCC--cccEe-CHHHhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCC-CccccCH-HHhhCC
Confidence            478999999986  44421 1112245789999999986 4542111 11245789999999886 5653221 122468


Q ss_pred             CCCCeEeccCCc
Q 028697          184 RKLKILNLCGCV  195 (205)
Q Consensus       184 ~~L~~L~l~~c~  195 (205)
                      ++|++|+++++.
T Consensus       100 ~~L~~L~l~~N~  111 (177)
T 2o6r_A          100 TQLKELALDTNQ  111 (177)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cccCEEECcCCc
Confidence            999999999885

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.01  E-value=0.0032  Score=54.22  Aligned_cols=75  Identities=19%  Similarity=0.201  Sum_probs=43.9

Q ss_pred             CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCC
Q 028697          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (205)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~  184 (205)
                      ++|+.|+++++  .++.     +...+++|+.|+++++ .++.     +...+++|++|+++++ .++  .+-.....++
T Consensus       221 ~~L~~L~Ls~N--~L~~-----lp~~l~~L~~L~Ls~N-~L~~-----lp~~~~~L~~L~Ls~N-~L~--~lp~~l~~l~  284 (622)
T 3g06_A          221 SGLKELIVSGN--RLTS-----LPVLPSELKELMVSGN-RLTS-----LPMLPSGLLSLSVYRN-QLT--RLPESLIHLS  284 (622)
T ss_dssp             TTCCEEECCSS--CCSC-----CCCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCC--SCCGGGGGSC
T ss_pred             CCCCEEEccCC--ccCc-----CCCCCCcCcEEECCCC-CCCc-----CCcccccCcEEeCCCC-CCC--cCCHHHhhcc
Confidence            56667777665  3332     1134567777777775 3431     1114567888888776 555  2222234678


Q ss_pred             CCCeEeccCCc
Q 028697          185 KLKILNLCGCV  195 (205)
Q Consensus       185 ~L~~L~l~~c~  195 (205)
                      +|++|++++++
T Consensus       285 ~L~~L~L~~N~  295 (622)
T 3g06_A          285 SETTVNLEGNP  295 (622)
T ss_dssp             TTCEEECCSCC
T ss_pred             ccCEEEecCCC
Confidence            88888888776

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=95.98  E-value=0.0032  Score=54.22  Aligned_cols=14  Identities=0%  Similarity=0.088  Sum_probs=4.9

Q ss_pred             chhhhhhHHHHHHH
Q 028697            9 SSEDLNLCFEKMMM   22 (205)
Q Consensus         9 ~~~~~~~~f~~~~~   22 (205)
                      .+++...++..|.-
T Consensus         4 ~~~~~~~~w~~W~~   17 (622)
T 3g06_A            4 DPAEYDAVWSAWRR   17 (622)
T ss_dssp             ------CHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            44556666666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.94  E-value=0.00035  Score=50.08  Aligned_cols=14  Identities=29%  Similarity=0.453  Sum_probs=7.6

Q ss_pred             hcCCCccEEEecCC
Q 028697          102 PKLTKLQTLVLRQD  115 (205)
Q Consensus       102 ~~~~~L~~L~l~~~  115 (205)
                      ..+++|+.|+++++
T Consensus        54 ~~l~~L~~L~Ls~N   67 (174)
T 2r9u_A           54 DHLVNLQQLYFNSN   67 (174)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             cCCcCCCEEECCCC
Confidence            34555555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=95.88  E-value=0.00039  Score=54.79  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=50.9

Q ss_pred             CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCC
Q 028697          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (205)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~  184 (205)
                      ++|++|+++++  .++......+ ..+++|+.|+++++ .++...... ...+++|++|+++++ .++.  +..-...++
T Consensus       193 ~~L~~L~l~~n--~i~~~~~~~l-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~--lp~~l~~l~  264 (332)
T 2ft3_A          193 ETLNELHLDHN--KIQAIELEDL-LRYSKLYRLGLGHN-QIRMIENGS-LSFLPTLRELHLDNN-KLSR--VPAGLPDLK  264 (332)
T ss_dssp             SSCSCCBCCSS--CCCCCCTTSS-TTCTTCSCCBCCSS-CCCCCCTTG-GGGCTTCCEEECCSS-CCCB--CCTTGGGCT
T ss_pred             CCCCEEECCCC--cCCccCHHHh-cCCCCCCEEECCCC-cCCcCChhH-hhCCCCCCEEECCCC-cCee--cChhhhcCc
Confidence            46777777664  3332211122 34678889988876 443321111 245789999999887 5652  222234789


Q ss_pred             CCCeEeccCCc
Q 028697          185 KLKILNLCGCV  195 (205)
Q Consensus       185 ~L~~L~l~~c~  195 (205)
                      +|++|+++++.
T Consensus       265 ~L~~L~l~~N~  275 (332)
T 2ft3_A          265 LLQVVYLHTNN  275 (332)
T ss_dssp             TCCEEECCSSC
T ss_pred             cCCEEECCCCC
Confidence            99999999876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=95.82  E-value=0.00024  Score=51.69  Aligned_cols=85  Identities=18%  Similarity=0.229  Sum_probs=56.3

Q ss_pred             CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCC
Q 028697          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (205)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~  184 (205)
                      +++++|+++++  .++..........+++|+.|+++++ .++...-.. ...+++|++|+++++ .++...-..+ ..++
T Consensus        29 ~~l~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~  102 (192)
T 1w8a_A           29 LHTTELLLNDN--ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGEN-KIKEISNKMF-LGLH  102 (192)
T ss_dssp             TTCSEEECCSC--CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSC-CCCEECSSSS-TTCT
T ss_pred             CCCCEEECCCC--cCCccCCccccccCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCCC-cCCccCHHHh-cCCC
Confidence            48999999986  4442111112246789999999987 454321111 245789999999886 6654322222 3689


Q ss_pred             CCCeEeccCCc
Q 028697          185 KLKILNLCGCV  195 (205)
Q Consensus       185 ~L~~L~l~~c~  195 (205)
                      +|++|+++++.
T Consensus       103 ~L~~L~L~~N~  113 (192)
T 1w8a_A          103 QLKTLNLYDNQ  113 (192)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEECCCCc
Confidence            99999999986

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=95.74  E-value=0.0013  Score=57.72  Aligned_cols=87  Identities=22%  Similarity=0.166  Sum_probs=57.5

Q ss_pred             HHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHH
Q 028697           99 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY  178 (205)
Q Consensus        99 ~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~  178 (205)
                      ..+..+++|+.|+++++  .+.. .-..+ ..+++|+.|+|+++ .++  .+-.-...+++|++|+++++ .++  .+-.
T Consensus       218 ~~~~~l~~L~~L~Ls~n--~l~~-l~~~~-~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~--~lp~  287 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNL--QIFN-ISANI-FKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLT--SLPA  287 (727)
T ss_dssp             ----CCCCCCEEECTTS--CCSC-CCGGG-GGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCS--SCCS
T ss_pred             hhhccCCCCcEEECCCC--CCCC-CChhh-cCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCC--ccCh
Confidence            34567789999999986  3331 11122 25899999999987 555  11111246899999999987 666  2222


Q ss_pred             HHhcCCCCCeEeccCCc
Q 028697          179 LCGFCRKLKILNLCGCV  195 (205)
Q Consensus       179 l~~~~~~L~~L~l~~c~  195 (205)
                      -...+++|++|+++++.
T Consensus       288 ~~~~l~~L~~L~L~~N~  304 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDNM  304 (727)
T ss_dssp             SGGGGTTCSEEECCSSC
T ss_pred             hhcCCCCCCEEECCCCC
Confidence            23478999999999985

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=95.27  E-value=0.0086  Score=51.02  Aligned_cols=11  Identities=18%  Similarity=0.344  Sum_probs=4.7

Q ss_pred             CCCCeEeccCC
Q 028697          184 RKLKILNLCGC  194 (205)
Q Consensus       184 ~~L~~L~l~~c  194 (205)
                      ++|++|+++++
T Consensus       160 ~~L~~L~Ls~N  170 (571)
T 3cvr_A          160 TSLEVLSVRNN  170 (571)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCcCEEECCCC
Confidence            34444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=94.73  E-value=0.00033  Score=52.56  Aligned_cols=13  Identities=23%  Similarity=0.437  Sum_probs=6.8

Q ss_pred             hcCCCccEEEecC
Q 028697          102 PKLTKLQTLVLRQ  114 (205)
Q Consensus       102 ~~~~~L~~L~l~~  114 (205)
                      ..+++|++|++++
T Consensus        77 ~~l~~L~~L~l~~   89 (239)
T 2xwt_C           77 YNLSKVTHIEIRN   89 (239)
T ss_dssp             ESCTTCCEEEEEE
T ss_pred             CCCcCCcEEECCC
Confidence            3445555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=94.61  E-value=0.00039  Score=52.12  Aligned_cols=108  Identities=11%  Similarity=0.037  Sum_probs=66.2

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      ..+++|+++++.- +. .....+..+++|++|+++++. .++.-. ......+++|+.|++++|..++.-... ....++
T Consensus        31 ~~l~~L~l~~n~l-~~-i~~~~~~~l~~L~~L~l~~n~-~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~  105 (239)
T 2xwt_C           31 PSTQTLKLIETHL-RT-IPSHAFSNLPNISRIYVSIDV-TLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELP  105 (239)
T ss_dssp             TTCCEEEEESCCC-SE-ECTTTTTTCTTCCEEEEECCS-SCCEEC-TTTEESCTTCCEEEEEEETTCCEECTT-SEECCT
T ss_pred             CcccEEEEeCCcc-eE-ECHHHccCCCCCcEEeCCCCC-CcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCC
Confidence            4688999887542 21 001234578999999999861 133211 111246789999999873345421111 123578


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCC---eEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLK---ILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~---~L~l~~c~  195 (205)
                      +|++|+++++ .++.  +.. ...+++|+   +|++++++
T Consensus       106 ~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~  141 (239)
T 2xwt_C          106 LLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNP  141 (239)
T ss_dssp             TCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCT
T ss_pred             CCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCc
Confidence            9999999886 4443  222 33677888   99999883

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=94.29  E-value=0.014  Score=48.17  Aligned_cols=10  Identities=10%  Similarity=-0.100  Sum_probs=5.2

Q ss_pred             CCceEecCCC
Q 028697           80 GLTHLSLSWC   89 (205)
Q Consensus        80 ~l~~L~l~~~   89 (205)
                      .+++|+++++
T Consensus       154 ~L~~L~l~~N  163 (454)
T 1jl5_A          154 FLKIIDVDNN  163 (454)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence            4555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=93.68  E-value=0.009  Score=50.89  Aligned_cols=53  Identities=17%  Similarity=0.160  Sum_probs=25.1

Q ss_pred             CcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       131 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|+.|+++++ .++.     +...+++|++|+++++ .++.  +..+   .++|++|+++++.
T Consensus       139 l~~L~~L~Ls~N-~l~~-----lp~~l~~L~~L~Ls~N-~L~~--lp~l---~~~L~~L~Ls~N~  191 (571)
T 3cvr_A          139 PALLEYINADNN-QLTM-----LPELPTSLEVLSVRNN-QLTF--LPEL---PESLEALDVSTNL  191 (571)
T ss_dssp             CTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSC--CCCC---CTTCCEEECCSSC
T ss_pred             CccccEEeCCCC-ccCc-----CCCcCCCcCEEECCCC-CCCC--cchh---hCCCCEEECcCCC
Confidence            456666666654 3321     1113456666666554 3332  1111   1556666666553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=93.58  E-value=0.029  Score=46.22  Aligned_cols=10  Identities=20%  Similarity=-0.154  Sum_probs=4.6

Q ss_pred             CCceEecCCC
Q 028697           80 GLTHLSLSWC   89 (205)
Q Consensus        80 ~l~~L~l~~~   89 (205)
                      .+++|+++++
T Consensus       196 ~L~~L~l~~N  205 (454)
T 1jl5_A          196 FLTAIYADNN  205 (454)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence            3444554443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=93.30  E-value=0.0086  Score=42.42  Aligned_cols=85  Identities=18%  Similarity=0.147  Sum_probs=54.7

Q ss_pred             CCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcC
Q 028697          104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC  183 (205)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~  183 (205)
                      .++++.|+++++  .++.-.-..+ ..+++|+.|+++++ .++.-.- .....+++|++|+++++ .++.-.- .....+
T Consensus        29 ~~~l~~L~L~~N--~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l  101 (170)
T 3g39_A           29 PTTTQVLYLYDN--QITKLEPGVF-DRLTQLTRLDLDNN-QLTVLPA-GVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNL  101 (170)
T ss_dssp             CTTCSEEECCSS--CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred             CCCCcEEEcCCC--cCCccChhhh-cCcccCCEEECCCC-CcCccCh-hhccCCCCCCEEECCCC-ccCEeCH-HHhcCC
Confidence            378999999986  4442111112 35789999999986 4542111 11245789999999886 5553211 123368


Q ss_pred             CCCCeEeccCCc
Q 028697          184 RKLKILNLCGCV  195 (205)
Q Consensus       184 ~~L~~L~l~~c~  195 (205)
                      ++|++|++++.+
T Consensus       102 ~~L~~L~L~~N~  113 (170)
T 3g39_A          102 KSLTHIWLLNNP  113 (170)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CCCCEEEeCCCC
Confidence            899999999876

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=92.99  E-value=0.013  Score=41.71  Aligned_cols=84  Identities=18%  Similarity=0.180  Sum_probs=53.8

Q ss_pred             CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCC
Q 028697          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (205)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~  184 (205)
                      ++|+.|+++++  .++.-. ......+++|+.|+++++ .++.-.- .+...+++|++|+++++ .++.-. ......++
T Consensus        33 ~~L~~L~Ls~N--~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~  105 (174)
T 2r9u_A           33 TDKQRLWLNNN--QITKLE-PGVFDHLVNLQQLYFNSN-KLTAIPT-GVFDKLTQLTQLDLNDN-HLKSIP-RGAFDNLK  105 (174)
T ss_dssp             TTCSEEECCSS--CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred             CCCcEEEeCCC--CccccC-HHHhcCCcCCCEEECCCC-CCCccCh-hHhCCcchhhEEECCCC-ccceeC-HHHhcccc
Confidence            78999999986  444211 112235789999999986 4543110 11245789999999886 555311 11233688


Q ss_pred             CCCeEeccCCc
Q 028697          185 KLKILNLCGCV  195 (205)
Q Consensus       185 ~L~~L~l~~c~  195 (205)
                      +|++|++++.+
T Consensus       106 ~L~~L~L~~N~  116 (174)
T 2r9u_A          106 SLTHIYLYNNP  116 (174)
T ss_dssp             TCSEEECCSSC
T ss_pred             CCCEEEeCCCC
Confidence            99999998876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=90.27  E-value=0.014  Score=46.02  Aligned_cols=12  Identities=25%  Similarity=0.426  Sum_probs=5.6

Q ss_pred             cCCCccEEEecC
Q 028697          103 KLTKLQTLVLRQ  114 (205)
Q Consensus       103 ~~~~L~~L~l~~  114 (205)
                      .+++|+.|+|++
T Consensus        54 ~l~~L~~L~l~~   65 (347)
T 2ifg_A           54 GLGELRNLTIVK   65 (347)
T ss_dssp             SCCCCSEEECCS
T ss_pred             cccCCCEEECCC
Confidence            344444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=89.54  E-value=0.19  Score=39.27  Aligned_cols=85  Identities=14%  Similarity=0.194  Sum_probs=39.9

Q ss_pred             HHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCC-CCCCHHHHHHHHhcCCCCC-EEeecCCCCCCHHHH
Q 028697           99 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLT-RLNISGCTSFSDHAL  176 (205)
Q Consensus        99 ~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~-~L~l~~~~~it~~~l  176 (205)
                      .+...|++|+.|+++.+  .++.- -......|++|+.|.+++. ..+.+.+    ...|++|+ .+.+.+  .++.-+-
T Consensus       220 ~l~~~~~~L~~l~L~~n--~i~~I-~~~aF~~~~~L~~l~l~~ni~~I~~~a----F~~~~~L~~~l~l~~--~l~~I~~  290 (329)
T 3sb4_A          220 LIRDYMPNLVSLDISKT--NATTI-PDFTFAQKKYLLKIKLPHNLKTIGQRV----FSNCGRLAGTLELPA--SVTAIEF  290 (329)
T ss_dssp             HHHHHCTTCCEEECTTB--CCCEE-CTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEEECT--TCCEECT
T ss_pred             HHHHhcCCCeEEECCCC--Cccee-cHhhhhCCCCCCEEECCcccceehHHH----hhCChhccEEEEEcc--cceEEch
Confidence            33344666777766653  22210 0111234666777666552 1122222    23466777 777754  2322111


Q ss_pred             HHHHhcCCCCCeEeccC
Q 028697          177 AYLCGFCRKLKILNLCG  193 (205)
Q Consensus       177 ~~l~~~~~~L~~L~l~~  193 (205)
                      .+ ..+|++|+++++.+
T Consensus       291 ~a-F~~c~~L~~l~l~~  306 (329)
T 3sb4_A          291 GA-FMGCDNLRYVLATG  306 (329)
T ss_dssp             TT-TTTCTTEEEEEECS
T ss_pred             hh-hhCCccCCEEEeCC
Confidence            11 23577777777643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=85.68  E-value=0.83  Score=35.48  Aligned_cols=68  Identities=19%  Similarity=0.287  Sum_probs=38.1

Q ss_pred             CCHHHHHHHHhcCcccceeeccCC--CCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCC-eEeccC
Q 028697          119 LEDNAVEAIANSCHDLQDLDLSKS--FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLK-ILNLCG  193 (205)
Q Consensus       119 ~~~~~l~~l~~~~~~L~~L~l~~~--~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~-~L~l~~  193 (205)
                      +.......+...|++|+.++++++  ..+.+..+    ..|++|++|.+.+.  ++.-+-.+ -.+|++|+ ++.+..
T Consensus       213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF----~~~~~L~~l~l~~n--i~~I~~~a-F~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          213 LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF----AQKKYLLKIKLPHN--LKTIGQRV-FSNCGRLAGTLELPA  283 (329)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT----TTCTTCCEEECCTT--CCEECTTT-TTTCTTCCEEEEECT
T ss_pred             ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh----hCCCCCCEEECCcc--cceehHHH-hhCChhccEEEEEcc
Confidence            444455555556778888887763  22333322    45777888887552  32211111 23677787 777765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=84.93  E-value=0.1  Score=41.00  Aligned_cols=88  Identities=23%  Similarity=0.155  Sum_probs=55.3

Q ss_pred             HhcCCCccEEEecC-CCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHH
Q 028697          101 APKLTKLQTLVLRQ-DKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL  179 (205)
Q Consensus       101 ~~~~~~L~~L~l~~-~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l  179 (205)
                      ...+++|+.|+|++ +  .++.- .......+++|+.|+|+++ .++...-. ....+++|++|+|+++ .++.-. ..+
T Consensus        27 l~~~~~L~~L~l~~~n--~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~-~~~   99 (347)
T 2ifg_A           27 LPGAENLTELYIENQQ--HLQHL-ELRDLRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLS-WKT   99 (347)
T ss_dssp             SCSCSCCSEEECCSCS--SCCEE-CGGGSCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCC-STT
T ss_pred             CCCCCCeeEEEccCCC--CCCCc-ChhHhccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC-ccceeC-HHH
Confidence            55678899999985 4  44321 1111235789999999997 55431111 1246899999999886 555311 111


Q ss_pred             HhcCCCCCeEeccCCcc
Q 028697          180 CGFCRKLKILNLCGCVK  196 (205)
Q Consensus       180 ~~~~~~L~~L~l~~c~~  196 (205)
                      ....+ |++|++.+.+-
T Consensus       100 ~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A          100 VQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             TCSCC-CCEEECCSSCC
T ss_pred             cccCC-ceEEEeeCCCc
Confidence            22233 99999998763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=82.62  E-value=0.015  Score=46.07  Aligned_cols=108  Identities=13%  Similarity=0.116  Sum_probs=51.9

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCC---HHHHHHHHh
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLS---DRSLYALAH  155 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~---~~~~~~l~~  155 (205)
                      .++++|++++.. ++. .-...+..+++|++|+++++  .+....-......++++..+.+.++..++   ...    ..
T Consensus        30 ~~l~~L~Ls~N~-i~~-i~~~~f~~l~~L~~L~Ls~N--~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~----f~  101 (350)
T 4ay9_X           30 RNAIELRFVLTK-LRV-IQKGAFSGFGDLEKIEISQN--DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA----FQ  101 (350)
T ss_dssp             TTCSEEEEESCC-CSE-ECTTSSTTCTTCCEEEEECC--TTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS----BC
T ss_pred             CCCCEEEccCCc-CCC-cCHHHHcCCCCCCEEECcCC--CCCCccChhHhhcchhhhhhhcccCCcccccCchh----hh
Confidence            357788887653 221 00123456788888888876  22210000111234555544333222332   222    23


Q ss_pred             cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697          156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK  196 (205)
Q Consensus       156 ~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~  196 (205)
                      .+++|++|+++++ .++...-... ....++..|++.++.+
T Consensus       102 ~l~~L~~L~l~~n-~l~~~~~~~~-~~~~~l~~l~l~~~~~  140 (350)
T 4ay9_X          102 NLPNLQYLLISNT-GIKHLPDVHK-IHSLQKVLLDIQDNIN  140 (350)
T ss_dssp             CCTTCCEEEEEEE-CCSSCCCCTT-CCBSSCEEEEEESCTT
T ss_pred             hcccccccccccc-ccccCCchhh-cccchhhhhhhccccc
Confidence            5678888888775 4432110011 1234566777766554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=81.30  E-value=0.29  Score=39.25  Aligned_cols=56  Identities=23%  Similarity=0.532  Sum_probs=25.0

Q ss_pred             cCcccceeeccCC-CCCCHHHHHHHHhcCCCCCEEeecC-CCCCCHHHHHHHHhcCCCCCeEeccC
Q 028697          130 SCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISG-CTSFSDHALAYLCGFCRKLKILNLCG  193 (205)
Q Consensus       130 ~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~-~~~it~~~l~~l~~~~~~L~~L~l~~  193 (205)
                      .|.+|+.+.+... ..+.+.+    ...|.+|+.+.+.. ...|.+.   + -.+|++|+.+++.+
T Consensus       309 ~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~~I~~~---a-F~~C~~L~~i~~~~  366 (394)
T 4gt6_A          309 GCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVTKIPES---A-FSNCTALNNIEYSG  366 (394)
T ss_dssp             TCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCCBCCGG---G-GTTCTTCCEEEESS
T ss_pred             CCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccCEEhHh---H-hhCCCCCCEEEECC
Confidence            4556666665431 1222222    13456666666632 1122221   1 22566666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=80.46  E-value=0.79  Score=36.63  Aligned_cols=81  Identities=17%  Similarity=0.324  Sum_probs=47.7

Q ss_pred             HHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCC-CCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHH
Q 028697          100 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY  178 (205)
Q Consensus       100 l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~  178 (205)
                      .+..|.+|+.+.+...-..+.+..    ...|.+|+.+.+... ..+.+.++    ..|++|+.+.+.+.    ......
T Consensus       306 aF~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~~I~~~aF----~~C~~L~~i~~~~~----~~~~~~  373 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVTKIPESAF----SNCTALNNIEYSGS----RSQWNA  373 (394)
T ss_dssp             TTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCCBCCGGGG----TTCTTCCEEEESSC----HHHHHT
T ss_pred             eecCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccCEEhHhHh----hCCCCCCEEEECCc----eeehhh
Confidence            456788999999875312233322    246899999999753 23444443    56999999999764    223333


Q ss_pred             HHhcCCCCCeEeccC
Q 028697          179 LCGFCRKLKILNLCG  193 (205)
Q Consensus       179 l~~~~~~L~~L~l~~  193 (205)
                      + ..|.+|+.+.+..
T Consensus       374 ~-~~~~~L~~i~i~~  387 (394)
T 4gt6_A          374 I-STDSGLQNLPVAP  387 (394)
T ss_dssp             C-BCCCCC-------
T ss_pred             h-hccCCCCEEEeCC
Confidence            3 3688898887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	0.004

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 82  THLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSK 141
             L L+       NL   +  +L     +  R  +  ++    E    S   +Q +DLS 
Sbjct: 3   QTLDLTG-----KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSN 55

Query: 142 SFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
           S  +   +L+ +   C  L  L++ G    SD  +  L      L  LNL GC
Sbjct: 56  S-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGC 105

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 6e-04
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKI 188
            + LQ L LS+ + +   +L  L    P L  L + G     D  L  L      L+I
Sbjct: 199 LNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGIV--PDGTLQLLKEALPHLQI 253

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 9e-05
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78
          W  +P ELLL I S +  P ++  SGVC  W     
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 36

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 2e-04
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 133 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILN 190
           D+Q LD+    +LSD     L         + +  C  T      ++        L  LN
Sbjct: 3   DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 191 LCGC 194
           L   
Sbjct: 62  LRSN 65

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.004
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 45 DIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78
           +P EL L +LS ++   ++ A+  C  WR    
Sbjct: 21 LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.68
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.84
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.79
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.74
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.66
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.64
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.61
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.29
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.9
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.86
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.3
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.29
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.21
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.09
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.96
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.75
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.68
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.85
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.63
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	94.52
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	94.45
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.43
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.35
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	94.23
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	93.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	93.58
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	92.31
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	90.81
d2ifga3	156	High affinity nerve growth factor receptor, N-term	90.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	90.23
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	88.38
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	83.79

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.2e-17  Score=124.37  Aligned_cols=157  Identities=21%  Similarity=0.218  Sum_probs=125.0

Q ss_pred             CCCHHHHHHHHhcC-ChhHH--HHhhccchhhHHh-hcCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCC
Q 028697           45 DIPMELLLRILSLV-DEPTV--IVASGVCSGWRDA-ICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE  120 (205)
Q Consensus        45 ~Lp~e~l~~If~~l-~~~~l--~~~~~vck~w~~~-~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  120 (205)
                      .+.++.+..++.++ ..+.+  ..+.........+ -+++|++|++++|..+++..+..++..|++|++|++++| ..++
T Consensus        57 ~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c-~~~~  135 (284)
T d2astb2          57 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC-FDFT  135 (284)
T ss_dssp             EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC-TTCC
T ss_pred             ccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc-cccc
Confidence            36778888888876 33322  1222222222333 257899999999988999999999999999999999997 5788


Q ss_pred             HHHHHH-HHhcCcccceeeccCC-CCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccc
Q 028697          121 DNAVEA-IANSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAA  198 (205)
Q Consensus       121 ~~~l~~-l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~  198 (205)
                      +..+.. +...+++|+.|+++++ ..+++.++..+...||+|++|++++|..+++.++..+. .|++|++|++++|.+ +
T Consensus       136 ~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~-i  213 (284)
T d2astb2         136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYD-I  213 (284)
T ss_dssp             HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTT-C
T ss_pred             cccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCC-C
Confidence            877755 5556789999999986 46899999999999999999999999899999988887 689999999999988 8


Q ss_pred             cccccc
Q 028697          199 TDYALQ  204 (205)
Q Consensus       199 ~d~~~~  204 (205)
                      +|.++.
T Consensus       214 ~~~~l~  219 (284)
T d2astb2         214 IPETLL  219 (284)
T ss_dssp             CGGGGG
T ss_pred             ChHHHH
Confidence            888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.6e-16  Score=118.53  Aligned_cols=123  Identities=28%  Similarity=0.421  Sum_probs=108.0

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHH-Hhc
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYAL-AHG  156 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l-~~~  156 (205)
                      ++++++|++++|. +++..+..+. .+++|++|++++| ..+++..+..+++.|++|++|++++|..++++++..+ ...
T Consensus        70 c~~L~~L~L~~~~-l~~~~~~~l~-~~~~L~~L~Ls~c-~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          70 CSKLQNLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGC-SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             BCCCSEEECTTCB-CCHHHHHHHT-TCTTCSEEECTTC-BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             CCCcccccccccC-CCcHHHHHHh-cCCCCcCcccccc-ccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            6789999999984 6777766654 6899999999997 6899999999999999999999999989999988664 455


Q ss_pred             CCCCCEEeecCC-CCCCHHHHHHHHhcCCCCCeEeccCCcccccccccc
Q 028697          157 CPNLTRLNISGC-TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQ  204 (205)
Q Consensus       157 ~~~L~~L~l~~~-~~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d~~~~  204 (205)
                      +++|++|.+++| ..+++.++..++.+||+|++|++++|.. ++|.++.
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~-itd~~~~  194 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-LKNDCFQ  194 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-CCGGGGG
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccC-CCchhhh
Confidence            789999999987 4699999999999999999999999998 8888764

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.9e-12  Score=68.40  Aligned_cols=36  Identities=39%  Similarity=0.770  Sum_probs=33.9

Q ss_pred             CCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhhc
Q 028697           43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC   78 (205)
Q Consensus        43 ~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~~   78 (205)
                      |+.||+|++.+||+||+..++.++++|||+|++++.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            678999999999999999999999999999999853

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.6e-10  Score=91.54  Aligned_cols=116  Identities=18%  Similarity=0.279  Sum_probs=97.6

Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHH---hcCcccceeeccCCCCCCHHHHHHHHhc
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKSFKLSDRSLYALAHG  156 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~  156 (205)
                      +|+.|++++ ..+++..+..+...+++++.|++++|  .+++..+..++   +.+++|+.|+++++ .+++.++..++..
T Consensus         3 ~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~--~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~   78 (460)
T d1z7xw1           3 DIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDC--GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESS--CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred             CCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCC--CCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHH
Confidence            468899965 66899988899999999999999998  79998877765   57899999999987 8999999988875


Q ss_pred             C----CCCCEEeecCCCCCCHHHHHHHHh---cCCCCCeEeccCCcccccccc
Q 028697          157 C----PNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYA  202 (205)
Q Consensus       157 ~----~~L~~L~l~~~~~it~~~l~~l~~---~~~~L~~L~l~~c~~~~~d~~  202 (205)
                      +    ++|++|++++| .+++.++..++.   .+++|++|+++++.  +++.+
T Consensus        79 l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~--i~~~~  128 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL--LGDAG  128 (460)
T ss_dssp             TCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB--CHHHH
T ss_pred             HhcCCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc--chhhh
Confidence            4    47999999998 799988776654   68999999999986  56654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.94  E-value=3.4e-08  Score=69.18  Aligned_cols=115  Identities=15%  Similarity=0.102  Sum_probs=93.3

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHh---cCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHH
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAP---KLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLY  151 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~  151 (205)
                      .+.+++|++++...++++.+..++.   ..++|++|+++++  .+++..+..++.   ..++++.+++.++ .++++++.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n--~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~g~~   92 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT--RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL   92 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS--CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC--cccHHHHHHHHHHHhhcccchhhhhccc-cccchhHH
Confidence            5788999999877788888776665   6789999999997  888887777654   4579999999987 89999988


Q ss_pred             HHHhc---CCCCCEEeecCC-CCCCHHHHHHHHh---cCCCCCeEeccCCc
Q 028697          152 ALAHG---CPNLTRLNISGC-TSFSDHALAYLCG---FCRKLKILNLCGCV  195 (205)
Q Consensus       152 ~l~~~---~~~L~~L~l~~~-~~it~~~l~~l~~---~~~~L~~L~l~~c~  195 (205)
                      .++..   .+.|+.++++.+ ..+++.+...++.   .++.|++|++.+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            87754   578998877644 3788988777775   79999999998765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.88  E-value=4.4e-08  Score=68.75  Aligned_cols=115  Identities=10%  Similarity=0.125  Sum_probs=91.3

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHH---hcCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHH
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLA---PKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLY  151 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~  151 (205)
                      .+.+++|+++++..++++.+..++   ...++|++|++++|  .+++.....++.   ..+.|+.|+++++ .++++++.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n--~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~   90 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT--AISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA   90 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS--CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc--ccchhHHHHHhhhhhhcccccceeeehh-hcchHHHH
Confidence            567999999987778888766654   46678999999997  789887766553   4688999999998 89999998


Q ss_pred             HHHhcC---CCCCEEeecCC--CCCCHHHHHHHH---hcCCCCCeEeccCCc
Q 028697          152 ALAHGC---PNLTRLNISGC--TSFSDHALAYLC---GFCRKLKILNLCGCV  195 (205)
Q Consensus       152 ~l~~~~---~~L~~L~l~~~--~~it~~~l~~l~---~~~~~L~~L~l~~c~  195 (205)
                      .+++.+   +.|++|+++++  ..+++++...++   ...+.|++|++.+..
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            887654   67999999865  256677755555   468999999998865

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.88  E-value=2.3e-08  Score=70.08  Aligned_cols=107  Identities=14%  Similarity=0.119  Sum_probs=88.7

Q ss_pred             HHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHHHHHh---cCCCCCEEeecC
Q 028697           94 NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISG  167 (205)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~  167 (205)
                      ++.+..+....|+|++|++++. ..+++..+..+++   .+++|++|+++++ .++++++..++.   ..+.++.+++++
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~-~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~   83 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNI-MNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES   83 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTC-TTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCCcEEEcCCC-CCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcc
Confidence            5667788889999999999974 4799999888875   5689999999997 899998877654   468999999988


Q ss_pred             CCCCCHHHHHHHHh---cCCCCCeEeccCCccccccccc
Q 028697          168 CTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYAL  203 (205)
Q Consensus       168 ~~~it~~~l~~l~~---~~~~L~~L~l~~c~~~~~d~~~  203 (205)
                      + .+++.++..+++   .+++|+.+++..|.+.++|.+.
T Consensus        84 ~-~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          84 N-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             S-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             c-cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            7 899999988884   5688999888877655777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.9e-09  Score=83.90  Aligned_cols=93  Identities=18%  Similarity=0.234  Sum_probs=80.8

Q ss_pred             CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHH---hcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALA---HGCPNLTRLNISGCTSFSDHALAYLCG  181 (205)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~it~~~l~~l~~  181 (205)
                      ++|+.|+++..  ++++..+..+...+++++.|++.+| .++++++..++   ..+++|++|+++++ .+++.++..++.
T Consensus         2 ~~l~~ld~~~~--~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~   77 (460)
T d1z7xw1           2 LDIQSLDIQCE--ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEEESC--CCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH
T ss_pred             CCCCEEEeeCC--cCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHH
Confidence            57899999874  9999999998888999999999998 79999887765   67899999999987 899999999986


Q ss_pred             cC----CCCCeEeccCCccccccccc
Q 028697          182 FC----RKLKILNLCGCVKAATDYAL  203 (205)
Q Consensus       182 ~~----~~L~~L~l~~c~~~~~d~~~  203 (205)
                      .+    ++|++|++++|.  ++|.++
T Consensus        78 ~l~~~~~~L~~L~L~~n~--it~~~~  101 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCC--LTGAGC  101 (460)
T ss_dssp             TTCSTTCCCCEEECTTSC--CBGGGH
T ss_pred             HHhcCCCCCCEEECCCCC--cccccc
Confidence            53    579999999996  787653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.79  E-value=7e-08  Score=75.08  Aligned_cols=113  Identities=19%  Similarity=0.120  Sum_probs=80.5

Q ss_pred             cCCCceEecCCCCCCCHHHHH----HHHhcCCCccEEEecCCCCCCCHHHHHHHH---hcCcccceeeccCCCCCCHHHH
Q 028697           78 CLGLTHLSLSWCKNNMNNLVL----SLAPKLTKLQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKSFKLSDRSL  150 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~----~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~l~~~~~  150 (205)
                      .+.++.|+++++. +.++.+.    .....+++|+.|+++.+  .+++.....++   ..+++|+.|++++| .+++.++
T Consensus       185 ~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N--~i~~~g~~~L~~~l~~~~~L~~L~Ls~n-~i~~~g~  260 (344)
T d2ca6a1         185 HRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGA  260 (344)
T ss_dssp             CTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHH
T ss_pred             hhhhccccccccc-ccccccccchhhhhcchhhhcccccccc--cccccccccccccccccccchhhhhhcC-ccCchhh
Confidence            4567888887764 5554332    23456788888888876  67776655554   45678888888887 7888887


Q ss_pred             HHHHhc-----CCCCCEEeecCCCCCCHHHHHHHHh----cCCCCCeEeccCCc
Q 028697          151 YALAHG-----CPNLTRLNISGCTSFSDHALAYLCG----FCRKLKILNLCGCV  195 (205)
Q Consensus       151 ~~l~~~-----~~~L~~L~l~~~~~it~~~l~~l~~----~~~~L~~L~l~~c~  195 (205)
                      ..++..     .+.|++|+++++ .+++.++..+..    .+++|++|++++..
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            777643     356888888876 788888777664    56788888888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.74  E-value=8.4e-08  Score=67.24  Aligned_cols=99  Identities=14%  Similarity=0.212  Sum_probs=81.5

Q ss_pred             HHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHHHHH---hcCCCCCEEeecC
Q 028697           94 NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLYALA---HGCPNLTRLNISG  167 (205)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~  167 (205)
                      ++.+..+....++|++|+++++ ..+++..+..++.   ..++|++|+++++ .++++++..++   ...+.|++|++++
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~-~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~   81 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNM-KRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES   81 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTC-CSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHHHhCCCCCcEEEeCCC-CCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeeh
Confidence            4567788889999999999975 3688988877654   4578999999997 89998876655   4578999999999


Q ss_pred             CCCCCHHHHHHHHhc---CCCCCeEeccCCc
Q 028697          168 CTSFSDHALAYLCGF---CRKLKILNLCGCV  195 (205)
Q Consensus       168 ~~~it~~~l~~l~~~---~~~L~~L~l~~c~  195 (205)
                      | .+++.++..++..   ++.|++|++.++.
T Consensus        82 n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          82 N-FLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             S-BCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             h-hcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            8 8999999988754   5779999998764

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=3.9e-09  Score=67.93  Aligned_cols=37  Identities=24%  Similarity=0.514  Sum_probs=33.9

Q ss_pred             CCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697           41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI   77 (205)
Q Consensus        41 ~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~   77 (205)
                      ..+..||+|++.+||+||+..++.++++|||+|+.++
T Consensus         4 D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~   40 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   40 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHH
T ss_pred             CchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999874

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.3e-08  Score=65.57  Aligned_cols=38  Identities=26%  Similarity=0.407  Sum_probs=35.4

Q ss_pred             CCCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697           40 ITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI   77 (205)
Q Consensus        40 ~~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~   77 (205)
                      ...+..||+|++.+||+||+..+++++++|||+|+.++
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            46678899999999999999999999999999999984

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.61  E-value=2.9e-07  Score=71.50  Aligned_cols=119  Identities=21%  Similarity=0.216  Sum_probs=82.6

Q ss_pred             cCCCceEecCCCCCCCHH---HHHHHHhcCCCccEEEecCCCCCCCHHHHHHH----HhcCcccceeeccCCCCCCHHHH
Q 028697           78 CLGLTHLSLSWCKNNMNN---LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAI----ANSCHDLQDLDLSKSFKLSDRSL  150 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l----~~~~~~L~~L~l~~~~~l~~~~~  150 (205)
                      ...++.+.+++.. +++.   .+......+++|++|+++.+  .+++..+..+    ...+++|+.|+++++ .+++.+.
T Consensus       157 ~~~L~~l~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n--~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~  232 (344)
T d2ca6a1         157 APPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQN--GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGS  232 (344)
T ss_dssp             CCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSS--CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHH
T ss_pred             Ccccceeeccccc-ccccccccccchhhhhhhhcccccccc--cccccccccchhhhhcchhhhcccccccc-ccccccc
Confidence            3456677766532 3333   33444566788999998886  6777654432    235678999999876 6887776


Q ss_pred             HHHH---hcCCCCCEEeecCCCCCCHHHHHHHHhc-----CCCCCeEeccCCccccccccc
Q 028697          151 YALA---HGCPNLTRLNISGCTSFSDHALAYLCGF-----CRKLKILNLCGCVKAATDYAL  203 (205)
Q Consensus       151 ~~l~---~~~~~L~~L~l~~~~~it~~~l~~l~~~-----~~~L~~L~l~~c~~~~~d~~~  203 (205)
                      ..+.   ..+++|++|++++| .+++.++..++..     .+.|++|+++++.  +++.++
T Consensus       233 ~~L~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~--i~~~~~  290 (344)
T d2ca6a1         233 SALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE--IELDAV  290 (344)
T ss_dssp             HHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC--CBHHHH
T ss_pred             ccccccccccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCCc--CChHHH
Confidence            6554   56788999999887 7888888888743     3578899998875  676654

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.2e-07  Score=61.25  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=32.1

Q ss_pred             CCCCCC----HHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697           42 EWKDIP----MELLLRILSLVDEPTVIVASGVCSGWRDAI   77 (205)
Q Consensus        42 ~~~~Lp----~e~l~~If~~l~~~~l~~~~~vck~w~~~~   77 (205)
                      .+..||    +|+..+||+||+..+++++++|||+|+.++
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~   49 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVT   49 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            345566    699999999999999999999999999985

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.3e-07  Score=61.70  Aligned_cols=61  Identities=25%  Similarity=0.290  Sum_probs=26.1

Q ss_pred             cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCH-HHHHHHHhcCCCCCEEeecCC
Q 028697          103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALAHGCPNLTRLNISGC  168 (205)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~  168 (205)
                      .+++|++|+++++  .++.- ...+...+++|+.|+++++ .+++ ..+.. ...+|+|++|+++++
T Consensus        61 ~l~~L~~L~ls~N--~i~~l-~~~~~~~l~~L~~L~L~~N-~i~~~~~l~~-l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          61 LLRRLKTLLVNNN--RICRI-GEGLDQALPDLTELILTNN-SLVELGDLDP-LASLKSLTYLCILRN  122 (162)
T ss_dssp             CCSSCCEEECCSS--CCCEE-CSCHHHHCTTCCEEECCSC-CCCCGGGGGG-GGGCTTCCEEECCSS
T ss_pred             cCcchhhhhcccc--cccCC-Cccccccccccccceeccc-cccccccccc-cccccccchhhcCCC
Confidence            4455555555554  22210 0111223455555555554 3322 11222 123555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1e-06  Score=61.24  Aligned_cols=105  Identities=16%  Similarity=0.219  Sum_probs=73.7

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      ..+++|+++++....-   ..+...+++|+.|+++++  .++.  +..+ ..+++|+.|+++++ .++.-.- .+...++
T Consensus        18 ~~lr~L~L~~n~I~~i---~~~~~~l~~L~~L~Ls~N--~i~~--l~~~-~~l~~L~~L~ls~N-~i~~l~~-~~~~~l~   87 (162)
T d1a9na_          18 VRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDN--EIRK--LDGF-PLLRRLKTLLVNNN-RICRIGE-GLDQALP   87 (162)
T ss_dssp             TSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSS--CCCE--ECCC-CCCSSCCEEECCSS-CCCEECS-CHHHHCT
T ss_pred             CcCcEEECCCCCCCcc---CccccccccCCEEECCCC--CCCc--cCCc-ccCcchhhhhcccc-cccCCCc-ccccccc
Confidence            3578999998753221   234567899999999997  4552  2222 46789999999997 4543111 1234689


Q ss_pred             CCCEEeecCCCCCCHH-HHHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDH-ALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~-~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .+++- .+..+. .+|+|++|++.+|+
T Consensus        88 ~L~~L~L~~N-~i~~~~~l~~l~-~l~~L~~L~l~~N~  123 (162)
T d1a9na_          88 DLTELILTNN-SLVELGDLDPLA-SLKSLTYLCILRNP  123 (162)
T ss_dssp             TCCEEECCSC-CCCCGGGGGGGG-GCTTCCEEECCSSG
T ss_pred             ccccceeccc-cccccccccccc-cccccchhhcCCCc
Confidence            9999999987 66543 344444 79999999999997

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=1.4e-05  Score=52.63  Aligned_cols=84  Identities=24%  Similarity=0.296  Sum_probs=42.8

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHH-HHHHHH
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDH-ALAYLC  180 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~-~l~~l~  180 (205)
                      ..+++|++|+++++  .++. .-..+ ..+++|+.|+++++ .++.-  .. ...+++|++|+++++ .+++- .+..+ 
T Consensus        17 ~~l~~L~~L~ls~N--~l~~-lp~~~-~~l~~L~~L~l~~N-~i~~l--~~-~~~l~~L~~L~l~~N-~i~~~~~~~~l-   86 (124)
T d1dcea3          17 EQLLLVTHLDLSHN--RLRA-LPPAL-AALRCLEVLQASDN-ALENV--DG-VANLPRLQELLLCNN-RLQQSAAIQPL-   86 (124)
T ss_dssp             GGGTTCCEEECCSS--CCCC-CCGGG-GGCTTCCEEECCSS-CCCCC--GG-GTTCSSCCEEECCSS-CCCSSSTTGGG-
T ss_pred             ccCCCCCEEECCCC--ccCc-chhhh-hhhhcccccccccc-ccccc--Cc-cccccccCeEECCCC-ccCCCCCchhh-
Confidence            45566777777664  3331 00112 24566777776665 33321  11 234666777777664 44432 12222 


Q ss_pred             hcCCCCCeEeccCCc
Q 028697          181 GFCRKLKILNLCGCV  195 (205)
Q Consensus       181 ~~~~~L~~L~l~~c~  195 (205)
                      ..+++|++|++++-+
T Consensus        87 ~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          87 VSCPRLVLLNLQGNS  101 (124)
T ss_dssp             GGCTTCCEEECTTSG
T ss_pred             cCCCCCCEEECCCCc
Confidence            356667777766644

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.42  E-value=5.9e-06  Score=59.10  Aligned_cols=105  Identities=18%  Similarity=0.143  Sum_probs=59.1

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +.+|++|+++++.- +.  +..+...+++|+.|+++++  .++.  +..+. .+++|+.|+++++ .+++-.-......+
T Consensus        69 l~~L~~L~Ls~N~i-~~--i~~~~~~~~~L~~L~l~~N--~i~~--l~~~~-~l~~L~~L~L~~N-~i~~~~~~~~l~~l  139 (198)
T d1m9la_          69 MENLRILSLGRNLI-KK--IENLDAVADTLEELWISYN--QIAS--LSGIE-KLVNLRVLYMSNN-KITNWGEIDKLAAL  139 (198)
T ss_dssp             HTTCCEEECCEEEE-CS--CSSHHHHHHHCCEEECSEE--ECCC--HHHHH-HHHHSSEEEESEE-ECCCHHHHHHHTTT
T ss_pred             CccccChhhccccc-cc--ccccccccccccccccccc--cccc--ccccc-ccccccccccccc-hhccccccccccCC
Confidence            45677787776531 11  1112233456788888775  4443  23333 4678888888876 56543222223457


Q ss_pred             CCCCEEeecCCCCCCHH---------HHHHHHhcCCCCCeEecc
Q 028697          158 PNLTRLNISGCTSFSDH---------ALAYLCGFCRKLKILNLC  192 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~---------~l~~l~~~~~~L~~L~l~  192 (205)
                      ++|++|+++++ .++..         .-..+...+|+|++||-.
T Consensus       140 ~~L~~L~L~~N-~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         140 DKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             TTCSEEEECSS-HHHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             CccceeecCCC-ccccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence            88888888775 23221         112234568888888633

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=3.7e-05  Score=52.98  Aligned_cols=87  Identities=23%  Similarity=0.292  Sum_probs=57.0

Q ss_pred             HHHHhcCCCccEEEecCCCCCCCH-HHHHHHHhcCcccceeeccCCCCCCH-HHHHHHHhcCCCCCEEeecCCCCCC---
Q 028697           98 LSLAPKLTKLQTLVLRQDKPQLED-NAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALAHGCPNLTRLNISGCTSFS---  172 (205)
Q Consensus        98 ~~l~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~it---  172 (205)
                      ..+...+++|++|+++++  ++++ ..+......+++|+.|+++++ .+++ +.+..+  ...+|+.|+++++ .++   
T Consensus        58 ~~~~~~~~~L~~L~Ls~N--~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l--~~~~L~~L~L~~N-pl~~~~  131 (162)
T d1koha1          58 RIIEENIPELLSLNLSNN--RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKI--KGLKLEELWLDGN-SLSDTF  131 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSS--CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHH--TTCCCSSCCCTTS-TTSSSS
T ss_pred             HHHHHhCCCCCEeeCCCc--cccCCchhHHHHhhCCcccccccccC-ccccchhhhhh--hccccceeecCCC-CcCcCc
Confidence            345567888999999886  4543 123333456888999999886 5553 333332  2457888888876 343   


Q ss_pred             ---HHHHHHHHhcCCCCCeEe
Q 028697          173 ---DHALAYLCGFCRKLKILN  190 (205)
Q Consensus       173 ---~~~l~~l~~~~~~L~~L~  190 (205)
                         ......+.+.+|+|+.||
T Consensus       132 ~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         132 RDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSHHHHHHHHHTTSTTCCEET
T ss_pred             ccchhHHHHHHHHCCCCCEEC
Confidence               345566677889998886

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=1.5e-05  Score=52.56  Aligned_cols=101  Identities=25%  Similarity=0.351  Sum_probs=67.7

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHH-HHHHHHhc
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDR-SLYALAHG  156 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~  156 (205)
                      +..+++|++++.. +..  +......+++|+.|+++++  .++.  +..+ ..+++|+.|+++++ .+++- .+.. ...
T Consensus        19 l~~L~~L~ls~N~-l~~--lp~~~~~l~~L~~L~l~~N--~i~~--l~~~-~~l~~L~~L~l~~N-~i~~~~~~~~-l~~   88 (124)
T d1dcea3          19 LLLVTHLDLSHNR-LRA--LPPALAALRCLEVLQASDN--ALEN--VDGV-ANLPRLQELLLCNN-RLQQSAAIQP-LVS   88 (124)
T ss_dssp             GTTCCEEECCSSC-CCC--CCGGGGGCTTCCEEECCSS--CCCC--CGGG-TTCSSCCEEECCSS-CCCSSSTTGG-GGG
T ss_pred             CCCCCEEECCCCc-cCc--chhhhhhhhcccccccccc--cccc--cCcc-ccccccCeEECCCC-ccCCCCCchh-hcC
Confidence            5678999998764 221  2123457899999999996  4543  2334 35899999999986 55432 2333 356


Q ss_pred             CCCCCEEeecCCCCCCHH--HHHHHHhcCCCCCeE
Q 028697          157 CPNLTRLNISGCTSFSDH--ALAYLCGFCRKLKIL  189 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~--~l~~l~~~~~~L~~L  189 (205)
                      +++|++|++++. .++..  ....+...+|+|+.+
T Consensus        89 ~~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          89 CPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence            899999999885 55432  134455568888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.30  E-value=2.5e-05  Score=55.73  Aligned_cols=104  Identities=20%  Similarity=0.222  Sum_probs=70.9

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      ..++++|+++++. +..  +. -...+++|+.|+++++  .+++  +..+...+++|+.|+++++ .++.-  .. ...+
T Consensus        47 L~~L~~L~Ls~n~-I~~--i~-~l~~l~~L~~L~Ls~N--~i~~--i~~~~~~~~~L~~L~l~~N-~i~~l--~~-~~~l  114 (198)
T d1m9la_          47 LKACKHLALSTNN-IEK--IS-SLSGMENLRILSLGRN--LIKK--IENLDAVADTLEELWISYN-QIASL--SG-IEKL  114 (198)
T ss_dssp             TTTCCEEECSEEE-ESC--CC-CHHHHTTCCEEECCEE--EECS--CSSHHHHHHHCCEEECSEE-ECCCH--HH-HHHH
T ss_pred             ccccceeECcccC-CCC--cc-cccCCccccChhhccc--cccc--ccccccccccccccccccc-ccccc--cc-cccc
Confidence            5678999998764 221  11 1346789999999986  3432  1122233568999999987 56542  22 2346


Q ss_pred             CCCCEEeecCCCCCCHH-HHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDH-ALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~-~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|++|+++++ .+++- .+..+. .+++|++|++++++
T Consensus       115 ~~L~~L~L~~N-~i~~~~~~~~l~-~l~~L~~L~L~~N~  151 (198)
T d1m9la_         115 VNLRVLYMSNN-KITNWGEIDKLA-ALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHSSEEEESEE-ECCCHHHHHHHT-TTTTCSEEEECSSH
T ss_pred             ccccccccccc-hhcccccccccc-CCCccceeecCCCc
Confidence            78999999886 67654 344554 79999999999986

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.29  E-value=0.00014  Score=51.56  Aligned_cols=61  Identities=31%  Similarity=0.402  Sum_probs=36.6

Q ss_pred             cCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccccc
Q 028697          130 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD  200 (205)
Q Consensus       130 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d  200 (205)
                      .+++|+.|+++++ .++.-.  . ...+++|++|++.++ .+++  +..+ .++++|++|+++++.  +++
T Consensus       126 ~l~~L~~L~l~~n-~l~~~~--~-l~~~~~L~~L~l~~n-~l~~--l~~l-~~l~~L~~L~ls~N~--i~~  186 (199)
T d2omxa2         126 NLTNLNRLELSSN-TISDIS--A-LSGLTSLQQLNFSSN-QVTD--LKPL-ANLTTLERLDISSNK--VSD  186 (199)
T ss_dssp             TCTTCSEEECCSS-CCCCCG--G-GTTCTTCSEEECCSS-CCCC--CGGG-TTCTTCCEEECCSSC--CCC
T ss_pred             hhhhhHHhhhhhh-hhcccc--c-ccccccccccccccc-cccC--Cccc-cCCCCCCEEECCCCC--CCC
Confidence            4566777776665 333211  1 234677777777665 5544  2233 367888888888885  555

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.21  E-value=0.00017  Score=50.99  Aligned_cols=101  Identities=23%  Similarity=0.274  Sum_probs=46.2

Q ss_pred             cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697           78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (205)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  157 (205)
                      +.++++|+++++. ++.-  .. ...+++|++|+++.+  .+..  +..+ ..+++|+.|+++++.....+.    ...+
T Consensus        61 l~nL~~L~Ls~N~-l~~~--~~-l~~l~~L~~L~l~~n--~~~~--~~~l-~~l~~L~~L~l~~~~~~~~~~----~~~l  127 (199)
T d2omxa2          61 LNNLTQINFSNNQ-LTDI--TP-LKNLTKLVDILMNNN--QIAD--ITPL-ANLTNLTGLTLFNNQITDIDP----LKNL  127 (199)
T ss_dssp             CTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSS--CCCC--CGGG-TTCTTCSEEECCSSCCCCCGG----GTTC
T ss_pred             CCCcCcCcccccc-ccCc--cc-ccCCccccccccccc--cccc--cccc-ccccccccccccccccccccc----cchh
Confidence            3455555555542 2210  01 334555566655554  1111  1112 235556666665543222221    2335


Q ss_pred             CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++|+.|+++++ .++.  +..+ ..+++|++|++.++.
T Consensus       128 ~~L~~L~l~~n-~l~~--~~~l-~~~~~L~~L~l~~n~  161 (199)
T d2omxa2         128 TNLNRLELSSN-TISD--ISAL-SGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             TTCSEEECCSS-CCCC--CGGG-TTCTTCSEEECCSSC
T ss_pred             hhhHHhhhhhh-hhcc--cccc-ccccccccccccccc
Confidence            66666666655 3432  1222 256667777666664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.09  E-value=0.00013  Score=52.24  Aligned_cols=36  Identities=25%  Similarity=0.202  Sum_probs=23.1

Q ss_pred             cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       156 ~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      .+++|++++++++ .+++  +..+ ..+++|++|+++++.
T Consensus       154 ~l~~L~~l~l~~n-~l~~--i~~l-~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         154 RLTKLDTLSLEDN-QISD--IVPL-AGLTKLQNLYLSKNH  189 (210)
T ss_dssp             GCTTCSEEECCSS-CCCC--CGGG-TTCTTCCEEECCSSC
T ss_pred             ccccccccccccc-cccc--cccc-cCCCCCCEEECCCCC
Confidence            4667777777765 4543  2222 367788888888774

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.96  E-value=0.00022  Score=50.92  Aligned_cols=35  Identities=23%  Similarity=0.224  Sum_probs=17.9

Q ss_pred             CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      ++.|+.+.++++ .+++..  . ...+++|++++++++.
T Consensus       133 l~~l~~l~~~~n-~l~~~~--~-~~~l~~L~~l~l~~n~  167 (210)
T d1h6ta2         133 LPQLESLYLGNN-KITDIT--V-LSRLTKLDTLSLEDNQ  167 (210)
T ss_dssp             CTTCCEEECCSS-CCCCCG--G-GGGCTTCSEEECCSSC
T ss_pred             cccccccccccc-cccccc--c-cccccccccccccccc
Confidence            445555555443 333311  1 2256677777777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.80  E-value=0.00018  Score=51.89  Aligned_cols=100  Identities=21%  Similarity=0.227  Sum_probs=47.4

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      ..++.++++.+.....    .-....+.++.+.++.+  .+...  ..+ ..+++|+.|.+.++ .+++..  . ...++
T Consensus       107 ~~L~~l~l~~~~~~~~----~~~~~~~~~~~l~~~~~--~~~~~--~~~-~~~~~L~~L~l~~n-~~~~~~--~-l~~l~  173 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDV----TPLAGLSNLQVLYLDLN--QITNI--SPL-AGLTNLQYLSIGNA-QVSDLT--P-LANLS  173 (227)
T ss_dssp             TTCCEEECTTSCCCCC----GGGTTCTTCCEEECCSS--CCCCC--GGG-GGCTTCCEEECCSS-CCCCCG--G-GTTCT
T ss_pred             cccccccccccccccc----chhccccchhhhhchhh--hhchh--hhh-cccccccccccccc-ccccch--h-hcccc
Confidence            3456666655432211    11234456666666554  22211  011 24556666666654 332211  0 13456


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .+++  +..+ .++++|++|++++|.
T Consensus       174 ~L~~L~Ls~n-~l~~--l~~l-~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         174 KLTTLKADDN-KISD--ISPL-ASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             TCCEEECCSS-CCCC--CGGG-GGCTTCCEEECTTSC
T ss_pred             cceecccCCC-ccCC--Chhh-cCCCCCCEEECcCCc
Confidence            6666666665 4443  2222 356666666666663

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.75  E-value=0.0013  Score=47.14  Aligned_cols=97  Identities=25%  Similarity=0.262  Sum_probs=58.1

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      +.+..+.++++......    -...+++|+.|+++.+  .+++.  ..+ ..+++|+.|+++++ .+++-  .. ...++
T Consensus       129 ~~~~~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n--~~~~~--~~l-~~l~~L~~L~Ls~n-~l~~l--~~-l~~l~  195 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNA--QVSDL--TPL-ANLSKLTTLKADDN-KISDI--SP-LASLP  195 (227)
T ss_dssp             TTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSS--CCCCC--GGG-TTCTTCCEEECCSS-CCCCC--GG-GGGCT
T ss_pred             cchhhhhchhhhhchhh----hhcccccccccccccc--ccccc--hhh-cccccceecccCCC-ccCCC--hh-hcCCC
Confidence            35566666655432211    1346678888888775  33321  122 35778888888876 55531  11 34578


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEecc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLC  192 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~  192 (205)
                      +|++|++++| ++++  +..+ ..+++|++|+++
T Consensus       196 ~L~~L~Ls~N-~lt~--i~~l-~~l~~L~~L~ls  225 (227)
T d1h6ua2         196 NLIEVHLKNN-QISD--VSPL-ANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECTTS-CCCB--CGGG-TTCTTCCEEEEE
T ss_pred             CCCEEECcCC-cCCC--Cccc-ccCCCCCEEEee
Confidence            8888888876 6664  2233 367888888775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.73  E-value=0.00053  Score=52.74  Aligned_cols=58  Identities=22%  Similarity=0.204  Sum_probs=32.9

Q ss_pred             cCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          130 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       130 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      .+++++.|+++++ .+++-.  . ...+++|++|++++| .+++  +..+. .+++|++|+++++.
T Consensus       305 ~~~~l~~L~ls~n-~l~~l~--~-l~~l~~L~~L~L~~n-~l~~--l~~l~-~l~~L~~L~l~~N~  362 (384)
T d2omza2         305 NLKNLTYLTLYFN-NISDIS--P-VSSLTKLQRLFFANN-KVSD--VSSLA-NLTNINWLSAGHNQ  362 (384)
T ss_dssp             GCTTCSEEECCSS-CCSCCG--G-GGGCTTCCEEECCSS-CCCC--CGGGG-GCTTCCEEECCSSC
T ss_pred             hhcccCeEECCCC-CCCCCc--c-cccCCCCCEEECCCC-CCCC--ChhHc-CCCCCCEEECCCCc
Confidence            4556666666664 444311  1 245677777777666 5553  22333 56777777777664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.68  E-value=0.00028  Score=54.35  Aligned_cols=80  Identities=26%  Similarity=0.324  Sum_probs=59.0

Q ss_pred             HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH
Q 028697          101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC  180 (205)
Q Consensus       101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~  180 (205)
                      ...+++++.|+++.+  .+++  +..+ ..+++|++|+++++ .+++-.  . ...+++|++|+++++ .+++  +..+ 
T Consensus       303 ~~~~~~l~~L~ls~n--~l~~--l~~l-~~l~~L~~L~L~~n-~l~~l~--~-l~~l~~L~~L~l~~N-~l~~--l~~l-  369 (384)
T d2omza2         303 ISNLKNLTYLTLYFN--NISD--ISPV-SSLTKLQRLFFANN-KVSDVS--S-LANLTNINWLSAGHN-QISD--LTPL-  369 (384)
T ss_dssp             GGGCTTCSEEECCSS--CCSC--CGGG-GGCTTCCEEECCSS-CCCCCG--G-GGGCTTCCEEECCSS-CCCB--CGGG-
T ss_pred             cchhcccCeEECCCC--CCCC--Cccc-ccCCCCCEEECCCC-CCCCCh--h-HcCCCCCCEEECCCC-cCCC--Chhh-
Confidence            456788999999886  5554  2233 46899999999998 665422  2 346899999999886 7775  3333 


Q ss_pred             hcCCCCCeEeccC
Q 028697          181 GFCRKLKILNLCG  193 (205)
Q Consensus       181 ~~~~~L~~L~l~~  193 (205)
                      .++++|++|++++
T Consensus       370 ~~l~~L~~L~L~~  382 (384)
T d2omza2         370 ANLTRITQLGLND  382 (384)
T ss_dssp             TTCTTCSEEECCC
T ss_pred             ccCCCCCEeeCCC
Confidence            4799999999976

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.43  E-value=6.2e-06  Score=62.82  Aligned_cols=121  Identities=19%  Similarity=0.159  Sum_probs=71.7

Q ss_pred             cch-hhHHhhcC------CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccC
Q 028697           69 VCS-GWRDAICL------GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSK  141 (205)
Q Consensus        69 vck-~w~~~~~~------~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~  141 (205)
                      .|. .|..+.|.      .+++|++++..-.....+..-...+++|++|+++++ ..++......+. .+++|+.|++++
T Consensus        33 ~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~-N~l~g~iP~~i~-~L~~L~~L~Ls~  110 (313)
T d1ogqa_          33 CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-NNLVGPIPPAIA-KLTQLHYLYITH  110 (313)
T ss_dssp             TTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE-TTEESCCCGGGG-GCTTCSEEEEEE
T ss_pred             CCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccc-cccccccccccc-cccccchhhhcc
Confidence            455 48888654      378888887532211112233457899999999863 133322222343 578999999998


Q ss_pred             CCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          142 SFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       142 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      + .++.... .....++.|++++++++ .+....-.. ...++.|++++++++.
T Consensus       111 N-~l~~~~~-~~~~~~~~L~~l~l~~N-~~~~~~p~~-l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         111 T-NVSGAIP-DFLSQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNR  160 (313)
T ss_dssp             E-CCEEECC-GGGGGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSC
T ss_pred             c-ccccccc-ccccchhhhcccccccc-cccccCchh-hccCcccceeeccccc
Confidence            6 3332111 11245788999998775 222211112 2368889999988876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.32  E-value=2e-05  Score=55.83  Aligned_cols=108  Identities=22%  Similarity=0.150  Sum_probs=54.1

Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  159 (205)
                      .+++|++++.. ++...-...+...++|++|+++++  .+... ........++|+.|+++++ .++.-.-. ...++++
T Consensus        30 ~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N--~i~~~-~~~~~~~~~~L~~L~Ls~N-~l~~l~~~-~F~~l~~  103 (192)
T d1w8aa_          30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN--QLTGI-EPNAFEGASHIQELQLGEN-KIKEISNK-MFLGLHQ  103 (192)
T ss_dssp             TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS--CCCCB-CTTTTTTCTTCCEEECCSC-CCCEECSS-SSTTCTT
T ss_pred             CCCEEEeCCCC-CcccccccccCCCceEeeeecccc--ccccc-cccccccccccceeeeccc-cccccCHH-HHhCCCc
Confidence            45677777643 221111123445677777777664  33211 1112234567777777765 33321100 1234677


Q ss_pred             CCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       160 L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      |++|+++++ .++.-.-.. ....++|++|++++-+
T Consensus       104 L~~L~L~~N-~l~~i~~~~-f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         104 LKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCC
T ss_pred             ccccccCCc-cccccCHHH-hcCCcccccccccccc
Confidence            777777665 444211111 1256777777777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0014  Score=44.69  Aligned_cols=69  Identities=28%  Similarity=0.365  Sum_probs=50.1

Q ss_pred             HHHHHHhcCcccceeeccCCCCCCHH-HHHHHHhcCCCCCEEeecCCCCCCH-HHHHHHHhcCCCCCeEeccCCc
Q 028697          123 AVEAIANSCHDLQDLDLSKSFKLSDR-SLYALAHGCPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       123 ~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~it~-~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      .+..+...+++|+.|+++++ .+++- .+......+++|++|+++++ .+++ ..+..+  ...+|++|++.+.+
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l--~~~~L~~L~L~~Np  126 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKI--KGLKLEELWLDGNS  126 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHH--TTCCCSSCCCTTST
T ss_pred             hhHHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhhhh--hccccceeecCCCC
Confidence            44556667999999999997 56542 34444567999999999997 6664 334443  34579999999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.63  E-value=0.00014  Score=51.23  Aligned_cols=85  Identities=16%  Similarity=0.208  Sum_probs=56.0

Q ss_pred             CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCC
Q 028697          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (205)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~  184 (205)
                      +++++|+++++  .++...-......+++|+.|+++++ .+..... ......++|++|+++++ .++.-.-.. ..+++
T Consensus        29 ~~l~~L~Ls~N--~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~-~~~~~~~~L~~L~Ls~N-~l~~l~~~~-F~~l~  102 (192)
T d1w8aa_          29 LHTTELLLNDN--ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEP-NAFEGASHIQELQLGEN-KIKEISNKM-FLGLH  102 (192)
T ss_dssp             TTCSEEECCSC--CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEECCSC-CCCEECSSS-STTCT
T ss_pred             CCCCEEEeCCC--CCcccccccccCCCceEeeeecccc-ccccccc-cccccccccceeeeccc-cccccCHHH-HhCCC
Confidence            58999999986  4542111222245789999999886 3332111 11245789999999886 565422122 24789


Q ss_pred             CCCeEeccCCc
Q 028697          185 KLKILNLCGCV  195 (205)
Q Consensus       185 ~L~~L~l~~c~  195 (205)
                      +|++|++++..
T Consensus       103 ~L~~L~L~~N~  113 (192)
T d1w8aa_         103 QLKTLNLYDNQ  113 (192)
T ss_dssp             TCCEEECCSSC
T ss_pred             cccccccCCcc
Confidence            99999999986

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.00097  Score=49.11  Aligned_cols=105  Identities=26%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      .++++|++++.. ++. .-...+..+++|++|+++++  .++.  +... ..+++|+.|+++++ .++..  ......++
T Consensus        31 ~~l~~L~Ls~N~-i~~-l~~~~f~~l~~L~~L~L~~N--~l~~--l~~~-~~l~~L~~L~Ls~N-~l~~~--~~~~~~l~  100 (266)
T d1p9ag_          31 KDTTILHLSENL-LYT-FSLATLMPYTRLTQLNLDRA--ELTK--LQVD-GTLPVLGTLDLSHN-QLQSL--PLLGQTLP  100 (266)
T ss_dssp             TTCCEEECTTSC-CSE-EEGGGGTTCTTCCEEECTTS--CCCE--EECC-SCCTTCCEEECCSS-CCSSC--CCCTTTCT
T ss_pred             cCCCEEECcCCc-CCC-cCHHHhhccccccccccccc--cccc--cccc-cccccccccccccc-ccccc--cccccccc
Confidence            367888888753 221 00123456788888888876  4442  2222 24678888888876 44321  11234577


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +|+.|+++++. +..... .....++++++|++.++.
T Consensus       101 ~L~~L~l~~~~-~~~~~~-~~~~~l~~l~~L~l~~n~  135 (266)
T d1p9ag_         101 ALTVLDVSFNR-LTSLPL-GALRGLGELQELYLKGNE  135 (266)
T ss_dssp             TCCEEECCSSC-CCCCCS-STTTTCTTCCEEECTTSC
T ss_pred             ccccccccccc-cceeec-cccccccccccccccccc
Confidence            88888887763 322111 112356788888888765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.00092  Score=49.24  Aligned_cols=12  Identities=25%  Similarity=0.102  Sum_probs=5.3

Q ss_pred             CCCCCeEeccCC
Q 028697          183 CRKLKILNLCGC  194 (205)
Q Consensus       183 ~~~L~~L~l~~c  194 (205)
                      +++|++|+++++
T Consensus       171 l~~L~~L~Ls~N  182 (266)
T d1p9ag_         171 LENLDTLLLQEN  182 (266)
T ss_dssp             CTTCCEEECCSS
T ss_pred             ccccceeecccC
Confidence            344444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.43  E-value=0.0012  Score=49.46  Aligned_cols=11  Identities=9%  Similarity=0.030  Sum_probs=5.9

Q ss_pred             CCCceEecCCC
Q 028697           79 LGLTHLSLSWC   89 (205)
Q Consensus        79 ~~l~~L~l~~~   89 (205)
                      ..++.++++.+
T Consensus       150 ~~L~~l~l~~n  160 (305)
T d1xkua_         150 KKLSYIRIADT  160 (305)
T ss_dssp             TTCCEEECCSS
T ss_pred             cccCccccccC
Confidence            34556665554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.35  E-value=0.0015  Score=48.81  Aligned_cols=108  Identities=15%  Similarity=0.014  Sum_probs=49.7

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      .++++|+++++.....  .......+++++.|+++++  .++.... .....+++|+.|+++++ .++.-  ..-...++
T Consensus       171 ~~L~~L~l~~n~~~~~--~~~~~~~~~~l~~L~~s~n--~l~~~~~-~~~~~l~~L~~L~L~~N-~L~~l--p~~l~~l~  242 (305)
T d1xkua_         171 PSLTELHLDGNKITKV--DAASLKGLNNLAKLGLSFN--SISAVDN-GSLANTPHLRELHLNNN-KLVKV--PGGLADHK  242 (305)
T ss_dssp             TTCSEEECTTSCCCEE--CTGGGTTCTTCCEEECCSS--CCCEECT-TTGGGSTTCCEEECCSS-CCSSC--CTTTTTCS
T ss_pred             CccCEEECCCCcCCCC--ChhHhhccccccccccccc--ccccccc-ccccccccceeeecccc-ccccc--cccccccc
Confidence            3456666655432111  1123345566666666654  3332111 11134566777777665 33210  00013356


Q ss_pred             CCCEEeecCCCCCCHHHHH-----HHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALA-----YLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~-----~l~~~~~~L~~L~l~~c~  195 (205)
                      +|++|+++++ .++.-.-.     ......++|+.|++.+.+
T Consensus       243 ~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         243 YIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            7777777664 44421000     011234566677776665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.0024  Score=47.27  Aligned_cols=107  Identities=19%  Similarity=0.106  Sum_probs=59.9

Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (205)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  159 (205)
                      .++.+++++.. ++. .....+..+++|++|+++++  .++.-.- .....+++|+.+.++++ .++...- .....+++
T Consensus       130 ~L~~l~l~~N~-l~~-i~~~~f~~~~~L~~L~l~~N--~l~~l~~-~~f~~l~~L~~l~l~~N-~l~~i~~-~~f~~l~~  202 (284)
T d1ozna_         130 ALQYLYLQDNA-LQA-LPDDTFRDLGNLTHLFLHGN--RISSVPE-RAFRGLHSLDRLLLHQN-RVAHVHP-HAFRDLGR  202 (284)
T ss_dssp             TCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSS--CCCEECT-TTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTT
T ss_pred             ccchhhhcccc-ccc-cChhHhccccchhhcccccC--cccccch-hhhccccccchhhhhhc-cccccCh-hHhhhhhh
Confidence            45666665432 111 00123456677888888775  3332111 11235678888888875 3432111 11245678


Q ss_pred             CCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       160 L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      |++|+++++ .++...-..+ ..+++|++|++++-+
T Consensus       203 L~~L~l~~N-~i~~~~~~~~-~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         203 LMTLYLFAN-NLSALPTEAL-APLRALQYLRLNDNP  236 (284)
T ss_dssp             CCEEECCSS-CCSCCCHHHH-TTCTTCCEEECCSSC
T ss_pred             ccccccccc-cccccccccc-ccccccCEEEecCCC
Confidence            899998776 5554333333 368889999988754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.0015  Score=48.34  Aligned_cols=108  Identities=20%  Similarity=0.118  Sum_probs=58.5

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      .++++|+++++.....  ........++|+.++++.+  .++.-. ......+++|+.|+++++ .++.-.-. ....++
T Consensus       105 ~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~l~l~~N--~l~~i~-~~~f~~~~~L~~L~l~~N-~l~~l~~~-~f~~l~  177 (284)
T d1ozna_         105 GRLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDN--ALQALP-DDTFRDLGNLTHLFLHGN-RISSVPER-AFRGLH  177 (284)
T ss_dssp             TTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECCSS--CCCCCC-TTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCT
T ss_pred             ccCCEEecCCcccccc--cccccchhcccchhhhccc--cccccC-hhHhccccchhhcccccC-cccccchh-hhcccc
Confidence            4567777766542111  1123445667777777764  333211 111234567888888776 44321111 123567


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +|++++++++ .++.-.-.. ...+++|++|+++++.
T Consensus       178 ~L~~l~l~~N-~l~~i~~~~-f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         178 SLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLYLFANN  212 (284)
T ss_dssp             TCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred             ccchhhhhhc-cccccChhH-hhhhhhcccccccccc
Confidence            8888888765 444322122 2367888888888776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=93.58  E-value=0.012  Score=44.05  Aligned_cols=94  Identities=22%  Similarity=0.197  Sum_probs=56.5

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      .+++.|+++++. ++     .+-...++|++|+++++  +++     .+.....+|+.|++.++ .++.     +..-.+
T Consensus        38 ~~l~~LdLs~~~-L~-----~lp~~~~~L~~L~Ls~N--~l~-----~lp~~~~~L~~L~l~~n-~l~~-----l~~lp~   98 (353)
T d1jl5a_          38 RQAHELELNNLG-LS-----SLPELPPHLESLVASCN--SLT-----ELPELPQSLKSLLVDNN-NLKA-----LSDLPP   98 (353)
T ss_dssp             HTCSEEECTTSC-CS-----CCCSCCTTCSEEECCSS--CCS-----SCCCCCTTCCEEECCSS-CCSC-----CCSCCT
T ss_pred             cCCCEEEeCCCC-CC-----CCCCCCCCCCEEECCCC--CCc-----ccccchhhhhhhhhhhc-ccch-----hhhhcc
Confidence            467888888754 22     12234578899988875  444     12233467888888875 3321     111124


Q ss_pred             CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      .|++|+++++ .++.  +... ..+++|++|+++++.
T Consensus        99 ~L~~L~L~~n-~l~~--lp~~-~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          99 LLEYLGVSNN-QLEK--LPEL-QNSSFLKIIDVDNNS  131 (353)
T ss_dssp             TCCEEECCSS-CCSS--CCCC-TTCTTCCEEECCSSC
T ss_pred             cccccccccc-cccc--ccch-hhhccceeecccccc
Confidence            6888888776 4543  2222 357888888888775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=92.31  E-value=0.025  Score=42.13  Aligned_cols=53  Identities=26%  Similarity=0.248  Sum_probs=35.7

Q ss_pred             CcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (205)
Q Consensus       131 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~  195 (205)
                      +++|+.|+++++ .++.     +....++|++|+++++ .++.     +...+++|++|++++|+
T Consensus       283 ~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~L~~N-~L~~-----l~~~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         283 PPSLEELNVSNN-KLIE-----LPALPPRLERLIASFN-HLAE-----VPELPQNLKQLHVEYNP  335 (353)
T ss_dssp             CTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCC-ccCc-----cccccCCCCEEECCCC-cCCc-----cccccCCCCEEECcCCc
Confidence            467888888876 3432     2234678888888776 5553     22345678888888886

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.0016  Score=46.83  Aligned_cols=64  Identities=17%  Similarity=0.200  Sum_probs=26.4

Q ss_pred             hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCC
Q 028697          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC  168 (205)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~  168 (205)
                      ..+++|++|+++++  .+....-......+++++.+.+..+..+...... ....+++|+++.++++
T Consensus        50 ~~l~~L~~L~ls~n--~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~-~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          50 SGFGDLEKIEISQN--DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPNLQYLLISNT  113 (242)
T ss_dssp             TTCTTCCEEEEESC--TTCCEECSSSEESCTTCCEEEEECCTTCCEECTT-SEECCTTCCEEEEESC
T ss_pred             hccchhhhhhhccc--cccceeeccccccccccccccccccccccccccc-cccccccccccccchh
Confidence            44566666666654  2211000000123455555555443222211111 1134566666666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.50  E-value=0.0068  Score=40.80  Aligned_cols=84  Identities=23%  Similarity=0.122  Sum_probs=38.2

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (205)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  158 (205)
                      .++++|.+.+...++.- -...+...++|+.|+++++  .++.-.- .....+++|+.|+++++ .++.-.-.. . ...
T Consensus        31 ~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N--~l~~i~~-~~f~~l~~L~~L~Ls~N-~l~~l~~~~-~-~~~  103 (156)
T d2ifga3          31 ENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKS--GLRFVAP-DAFHFTPRLSRLNLSFN-ALESLSWKT-V-QGL  103 (156)
T ss_dssp             SCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSS--CCCEECT-TGGGSCSCCCEEECCSS-CCSCCCSTT-T-CSC
T ss_pred             cccCeeecCCCcccccc-CchhhccccccCcceeecc--ccCCccc-ccccccccccceeccCC-CCcccChhh-h-ccc
Confidence            35666666533222110 0112345667777777765  3332111 11234567777777765 332100000 1 123


Q ss_pred             CCCEEeecCCC
Q 028697          159 NLTRLNISGCT  169 (205)
Q Consensus       159 ~L~~L~l~~~~  169 (205)
                      .|++|++++..
T Consensus       104 ~l~~L~L~~Np  114 (156)
T d2ifga3         104 SLQELVLSGNP  114 (156)
T ss_dssp             CCCEEECCSSC
T ss_pred             cccccccCCCc
Confidence            57777776653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.23  E-value=0.014  Score=39.23  Aligned_cols=88  Identities=23%  Similarity=0.238  Sum_probs=54.1

Q ss_pred             HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH
Q 028697          101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC  180 (205)
Q Consensus       101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~  180 (205)
                      ....++|++|.+.+. ..++.-....+ ..+++|+.|+++++ .++.-.-. ....+++|++|+++++ .++.-.-.. .
T Consensus        27 l~~l~~l~~L~l~~n-~~l~~i~~~~f-~~l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~Ls~N-~l~~l~~~~-~  100 (156)
T d2ifga3          27 LPGAENLTELYIENQ-QHLQHLELRDL-RGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLSWKT-V  100 (156)
T ss_dssp             SCSCSCCSEEECCSC-SSCCEECGGGS-CSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCCSTT-T
T ss_pred             ccCccccCeeecCCC-ccccccCchhh-ccccccCcceeecc-ccCCcccc-cccccccccceeccCC-CCcccChhh-h
Confidence            345689999999753 12332111122 35789999999986 55432111 1345789999999886 554211111 1


Q ss_pred             hcCCCCCeEeccCCc
Q 028697          181 GFCRKLKILNLCGCV  195 (205)
Q Consensus       181 ~~~~~L~~L~l~~c~  195 (205)
                       ...+|++|++++-+
T Consensus       101 -~~~~l~~L~L~~Np  114 (156)
T d2ifga3         101 -QGLSLQELVLSGNP  114 (156)
T ss_dssp             -CSCCCCEEECCSSC
T ss_pred             -ccccccccccCCCc
Confidence             23579999999765

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.05  Score=27.54  Aligned_cols=22  Identities=18%  Similarity=0.007  Sum_probs=18.1

Q ss_pred             ccCCchhhhhhHHHHHHHhcCC
Q 028697            5 ATNLSSEDLNLCFEKMMMAGAG   26 (205)
Q Consensus         5 ~~~~~~~~~~~~f~~~~~~~~~   26 (205)
                      |..||+|.+..||++++..+-.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~   22 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELL   22 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHH
Confidence            4579999999999999876533

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=83.79  E-value=0.017  Score=43.03  Aligned_cols=84  Identities=17%  Similarity=0.047  Sum_probs=53.0

Q ss_pred             CccEEEecCCCCCCCHH--HHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcC
Q 028697          106 KLQTLVLRQDKPQLEDN--AVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC  183 (205)
Q Consensus       106 ~L~~L~l~~~~~~~~~~--~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~  183 (205)
                      ++++|+++++  .++..  .-..+. .+++|+.|+++++..++..--.. ...+++|++|+++++ .++.... .....+
T Consensus        51 ~v~~L~L~~~--~l~g~~~lp~~l~-~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N-~l~~~~~-~~~~~~  124 (313)
T d1ogqa_          51 RVNNLDLSGL--NLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIP-DFLSQI  124 (313)
T ss_dssp             CEEEEEEECC--CCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECC-GGGGGC
T ss_pred             EEEEEECCCC--CCCCCCCCChHHh-cCccccccccccccccccccccc-cccccccchhhhccc-ccccccc-ccccch
Confidence            6899999985  33321  112343 57999999998643332110011 245899999999887 4543222 223468


Q ss_pred             CCCCeEeccCCc
Q 028697          184 RKLKILNLCGCV  195 (205)
Q Consensus       184 ~~L~~L~l~~c~  195 (205)
                      ++|+++++.++.
T Consensus       125 ~~L~~l~l~~N~  136 (313)
T d1ogqa_         125 KTLVTLDFSYNA  136 (313)
T ss_dssp             TTCCEEECCSSE
T ss_pred             hhhccccccccc
Confidence            899999998875