Citrus Sinensis ID: 028711

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHILISLGQTLQFTTVGRLTMVQNPQAAGVVDDLQASK
Secondary Structure (PSIPRED)
ccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccccccEEEEEccccccccEEEEEEccccccEEEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEccccccccccccEEEEccccccccEcccccccccccccHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHcccEEEcEEccccccccccEEEEEEEcccccEEEEEEEccccccccccEHHHHHHHcccccEEEEEcccccccEEEEEEEcccccccEEEccccccc
Coil and Loop (DISEMBL)
mslrnsclsrrisrsfgeahkssketglgaaddsvvssttsasmdsgaaaahssgswagLLPELLGEIIRRVettedswphrqnvvACACVCKRWREITKDivkspflsgkitfpsclkqpgprefphqclirrnkkTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHILISlgqtlqftTVGRLTmvqnpqaagvvddlqask
Flexible Loop (DISEMBL)
mslrnsclsrrisrsfgeahkssketglgaaddSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVEttedswphrqnvVACACVCKRWREITKdivkspflsgkitfpsclkqpgpREFPHQCLIRRNKKTSTFYLYLAltpsfsekGKFLLAARRYRRGAHILISLGQTLQFTTVGRLTMVQnpqaagvvddlqask
Low Complexity Region (SEG)
MSLRNSCLSRRISRSFGEAHKSSKETGLGaaddsvvssttsasmdsgaaaahssgswagLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHILISLGQTLQFTTVGRLTMVQNPQAAGVVDDLQASK
Disordered region (IsUnstruct)
********************************************************WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHILISLGQTLQFTTVGRLTMVQN**************
Disordered Region (DISOPRED)
********************************************************WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHILISLGQTLQFTTVGRLTMVQ***************
Disordered Region (DISEMBL)
********SRRISRS***************************************GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHILISLGQTLQFTTVGRLTMVQNPQAAGVVDDLQASK
Disordered Region (DISPRO)
*SLRNSCLSRRISRSFGEAHKSSKETGLG************************SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHILISLGQTLQFTTVGRLTMVQNPQAAGVVDD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHILISLGQTLQFTTVGRLTMVQNPQAAGVVDDLQASK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q93VI8	379	Tubby-like F-box protein	yes	no	0.785	0.424	0.602	3e-51
Q5QM27	356	Tubby-like F-box protein	yes	no	0.575	0.331	0.628	1e-40
Q68Y48	372	Tubby-like F-box protein	yes	no	0.551	0.303	0.637	7e-40
Q94DT9	368	Tubby-like F-box protein	no	no	0.551	0.307	0.592	4e-36
Q688Y7	352	Tubby-like F-box protein	no	no	0.560	0.326	0.576	2e-34
Q69U54	451	Tubby-like F-box protein	no	no	0.536	0.243	0.594	5e-34
Q6Z2G9	428	Tubby-like F-box protein	no	no	0.585	0.280	0.560	3e-33
Q9ZP59	455	Tubby-like F-box protein	no	no	0.551	0.248	0.561	4e-33
Q8VY21	406	Tubby-like F-box protein	no	no	0.658	0.332	0.496	5e-33
Q8H485	406	Tubby-like F-box protein	no	no	0.629	0.317	0.519	5e-33

>sp|Q93VI8|TLP7_ARATH Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1

 Score =  201 bits (511), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/176 (60%), Positives = 124/176 (70%), Gaps = 15/176 (8%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           M L  S LSRRIS SF   H+   ET      +S+   +  A           S SW+ +
Sbjct: 1   MPLSRSLLSRRISNSF-RFHQG--ETTTAPESESIPPPSNMAG----------SSSWSAM 47

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK 
Sbjct: 48  LPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKL 107

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH--ILISL 174
           PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA+   +ISL
Sbjct: 108 PGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISL 163

Arabidopsis thaliana (taxid: 3702)

>sp|Q5QM27|TLP1_ORYSJ Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1

 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 95/121 (78%), Gaps = 3/121 (2%)

Query: 57  WAGLLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFP 115
           WA LLPEL+ E++RRVE +  + WP R++VV+CACVC+RWR+    +V+ P  SGKITFP
Sbjct: 34  WARLLPELMSEVVRRVEASGGERWPARKDVVSCACVCRRWRDAAVAVVRPPAESGKITFP 93

Query: 116 SCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH--ILIS 173
           S LKQPGPREFP QC I+RNKK STFYLYL LT +  +KGKFL+AARR+RRG H   ++S
Sbjct: 94  SSLKQPGPREFPMQCFIKRNKKNSTFYLYLGLTNATVDKGKFLMAARRFRRGPHTEYIVS 153

Query: 174 L 174
           L
Sbjct: 154 L 154

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q68Y48|TLP9_ORYSJ Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1

 Score =  163 bits (413), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 89/113 (78%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           W+ LLPELL EI+RRV+   + WP R++VVACACVC+RWR+    +V+ P   G+ITFPS
Sbjct: 52  WSRLLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFPS 111

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH 169
            LKQPGPR+ P  C IRRNKK STFYLYL+LT + ++KGKFLLAARR+R GAH
Sbjct: 112 SLKQPGPRDAPMHCFIRRNKKNSTFYLYLSLTQALTDKGKFLLAARRFRNGAH 164

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94DT9|TLP2_ORYSJ Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1

 Score =  150 bits (380), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 67/113 (59%), Positives = 85/113 (75%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           W+ L+P+LL +I+R VE   + WP R++VVACA VC+RWR++   +V+ P  SGKITFPS
Sbjct: 51  WSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPS 110

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH 169
            LKQPGPR+ P QC I+RNKK STF+LYL LT   ++  KFLLAARR RRG H
Sbjct: 111 SLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQELTDDEKFLLAARRCRRGLH 163

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q688Y7|TLP10_ORYSJ Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 89/118 (75%), Gaps = 3/118 (2%)

Query: 60  LLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCL 118
           LLPEL+ E++RRVE +  + WP R+++V+CACVC+RWRE    +V+    SG+ITFPS L
Sbjct: 27  LLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSL 86

Query: 119 KQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH--ILISL 174
           KQPGP++FP QC ++RNKK S FYLYL L     +KGKFL+AARR+RRG H   +ISL
Sbjct: 87  KQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISL 144

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69U54|TLP12_ORYSJ Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1

 Score =  144 bits (362), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 85/111 (76%), Gaps = 1/111 (0%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           W GL PELL ++++R+E  E +WP R++VVACA VC+ WREI KDIV+SP + GK+TFP 
Sbjct: 59  WVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPV 118

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRR 166
            LKQPGPR+   QC I+R+K   T+YLYL L+P+  SE GKFLLAA+R RR
Sbjct: 119 SLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRR 169

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/123 (56%), Positives = 88/123 (71%), Gaps = 3/123 (2%)

Query: 55  GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITF 114
           G WA L PELL ++I+RVE +E +WP R+ VVACA VC+ WRE+TK++VK+    G+ITF
Sbjct: 66  GRWANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEECGRITF 125

Query: 115 PSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKGKFLLAARRYRRGAH--IL 171
           P  LKQPGPRE P QC +RR++ TST+ LYL L+PS   E  K LLAAR+ RR      +
Sbjct: 126 PISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRATRTSFV 185

Query: 172 ISL 174
           ISL
Sbjct: 186 ISL 188

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZP59|TLP1_ARATH Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1

 Score =  141 bits (355), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 86/114 (75%), Gaps = 1/114 (0%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           WA L PELL ++I+R+E +E  WP R++VVACA VC+ WR++ K+IV+SP LSGKITFP 
Sbjct: 57  WANLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPV 116

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAH 169
            LKQPGPR+   QC I+R+K   T++LYL L+P+   E GKFLL+A+R RR  +
Sbjct: 117 SLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTY 170

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1

 Score =  140 bits (353), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/141 (49%), Positives = 91/141 (64%), Gaps = 6/141 (4%)

Query: 27  GLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV 86
           G G +    V   TS  +D     A     WA + PELL +++ R+E +ED+WP R+NVV
Sbjct: 27  GYGRSRSQRVVQDTSVPVD-----AFKQSCWASMPPELLRDVLMRIEQSEDTWPSRKNVV 81

Query: 87  ACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLA 146
           +CA VC+ WREI K+IV+ P LS K+TFP  LKQPGPR    QC I RN+   T+YLYL 
Sbjct: 82  SCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLG 141

Query: 147 LTPSFS-EKGKFLLAARRYRR 166
           L  + S + GKFLLAA+R+RR
Sbjct: 142 LNQAASNDDGKFLLAAKRFRR 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1

 Score =  140 bits (353), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 88/131 (67%), Gaps = 2/131 (1%)

Query: 46  SGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKS 105
           S AA       W  L PELL E++ RVE +E  WP R++VVACA VC+ WR I ++IV++
Sbjct: 44  SAAALVMRESCWTQLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRT 103

Query: 106 PFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYR 165
           P  SG +TFP  LKQPGPR+ P +C I RN+ T T+YLY+ LT + ++ GKFLLAAR+ R
Sbjct: 104 PEASGNLTFPISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCR 163

Query: 166 RG--AHILISL 174
           R      LISL
Sbjct: 164 RTTCTEYLISL 174

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
356549655	381	PREDICTED: tubby-like F-box protein 7-li	0.804	0.433	0.579	5e-54
302399099	378	TLP domain class transcription factor [M	0.824	0.447	0.630	1e-53
356544096	378	PREDICTED: tubby-like F-box protein 7-li	0.795	0.431	0.596	2e-53
255567112	381	conserved hypothetical protein [Ricinus	0.839	0.451	0.596	3e-52
357452139	371	Tubby-like F-box protein [Medicago trunc	0.751	0.415	0.609	3e-50
224116990	332	predicted protein [Populus trichocarpa]	0.560	0.346	0.774	8e-50
297853112	382	hypothetical protein ARALYDRAFT_892366 [	0.790	0.424	0.601	9e-50
449438923	380	PREDICTED: tubby-like F-box protein 7-li	0.619	0.334	0.705	1e-49
18404413	379	Tubby-like F-box protein 7 [Arabidopsis	0.785	0.424	0.602	1e-49
7769867	579	F12M16.22 [Arabidopsis thaliana]	0.785	0.278	0.602	2e-49

>gi|356549655|ref|XP_003543207.1| PREDICTED: tubby-like F-box protein 7-like [Glycine max]

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 102/176 (57%), Positives = 129/176 (73%), Gaps = 11/176 (6%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSLR    SR+ SRSF E   +     +G  D             +G  +++ +  W+ +
Sbjct: 1   MSLRKVFRSRKFSRSFKEVLPAEGAAIVGGED---------GVAGAGEESSNGNNGWSNM 51

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPE+LGEI+RRV+  E+ WP+RQNVVACACVCKRWR+IT+++V+ P  +GKITFP+CLKQ
Sbjct: 52  LPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRDITREVVRVPSHTGKITFPACLKQ 111

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH--ILISL 174
           PGPR+ PHQCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARRYR G H   +ISL
Sbjct: 112 PGPRDVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISL 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399099|gb|ADL36844.1| TLP domain class transcription factor [Malus x domestica]

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/176 (63%), Positives = 133/176 (75%), Gaps = 7/176 (3%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSLR +  SR+ S+SF E   S ++   G  D  VV  +  A   S  +++      + +
Sbjct: 1   MSLRKAFRSRKFSKSFRELKLSDEDQARGG-DRRVVRDSDCADSSSSTSSSSW----SDM 55

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE +ED WPHR+NVVACACVCKRWR+ITK+I +SP  SGKITFPSCLKQ
Sbjct: 56  LPELLGEIIRRVEASEDKWPHRKNVVACACVCKRWRDITKEIARSPSYSGKITFPSCLKQ 115

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH--ILISL 174
           PGPR+FPHQCLI+RNKKTSTFYLYLALT SF++KGKFLLAARRYR G +   +ISL
Sbjct: 116 PGPRDFPHQCLIKRNKKTSTFYLYLALTSSFTDKGKFLLAARRYRHGTNYEYIISL 171

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544096|ref|XP_003540491.1| PREDICTED: tubby-like F-box protein 7-like [Glycine max]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/176 (59%), Positives = 131/176 (74%), Gaps = 13/176 (7%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSLR    SR+ S+SF E   +      GAA +  V+ T         AA  ++  W+ +
Sbjct: 1   MSLRKVFRSRKFSKSFKEVLPAE-----GAAVEGGVAGTVEE------AANGNNNGWSSM 49

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPE+LGEI+RRV+  E+ WP+RQNVVACACVCKRWR+IT+++V+ P  +GKITFPSCLKQ
Sbjct: 50  LPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRDITREVVRVPSHTGKITFPSCLKQ 109

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH--ILISL 174
           PGPR+ PHQCLI+RN+KTSTFYLYLALTPSF++KGKFLLAARRYR G H   +ISL
Sbjct: 110 PGPRDVPHQCLIKRNQKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISL 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567112|ref|XP_002524538.1| conserved hypothetical protein [Ricinus communis] gi|223536212|gb|EEF37865.1| conserved hypothetical protein [Ricinus communis]

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/176 (59%), Positives = 121/176 (68%), Gaps = 4/176 (2%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSL+    SRR S+SF   +   ++  L      V         D           W  +
Sbjct: 1   MSLKKLIRSRRFSKSFKCVNNHKEDIALVVP--GVHDGGGGGGGDELWGEWEERDGWGSM 58

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEII+RVE +ED WP RQNVVACACVCK+WREI KDIVKSP  +GKITFPSCLK 
Sbjct: 59  LPELLGEIIKRVEESEDRWPQRQNVVACACVCKKWREIAKDIVKSPNNTGKITFPSCLKL 118

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHI--LISL 174
           PGP + P+QCLI+RNKKTSTFYLYLALTPSF +KGKFLLAARRYR GA +  +ISL
Sbjct: 119 PGPHDLPYQCLIKRNKKTSTFYLYLALTPSFMDKGKFLLAARRYRHGARMEYIISL 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452139|ref|XP_003596346.1| Tubby-like F-box protein [Medicago truncatula] gi|87241115|gb|ABD32973.1| Tubby; Cyclin-like F-box [Medicago truncatula] gi|355485394|gb|AES66597.1| Tubby-like F-box protein [Medicago truncatula]

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 123/169 (72%), Gaps = 15/169 (8%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSL     SR+ S+SF E    S +T    ADD           D+G  +A  +  W+ +
Sbjct: 1   MSLMKVFRSRKYSKSFKEVQ--SIDT---VADDR---------RDAGGESADGT-DWSTM 45

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LP+LL EII+RV+  E+ WPHRQNVVACACVCKRWR+IT++IVKSP  +G ITFPSCLKQ
Sbjct: 46  LPDLLAEIIKRVDVAEEQWPHRQNVVACACVCKRWRDITREIVKSPQRNGTITFPSCLKQ 105

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH 169
           PGPR+ PH CLI+R+KKTSTFYLYLALT SFS+KGKFLLAARRYR G H
Sbjct: 106 PGPRDLPHHCLIKRSKKTSTFYLYLALTSSFSDKGKFLLAARRYRCGTH 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116990|ref|XP_002331802.1| predicted protein [Populus trichocarpa] gi|222874498|gb|EEF11629.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 107/124 (86%), Gaps = 9/124 (7%)

Query: 60  LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKS-PFL------SGKI 112
           +LPELLGEII+RVE +ED WP RQNVVACACVCK+WRE+TKDIVKS P        SGKI
Sbjct: 1   MLPELLGEIIKRVEESEDRWPQRQNVVACACVCKKWREVTKDIVKSLPNNNNNNGSSGKI 60

Query: 113 TFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH--I 170
           TFPSCLKQPGPR+ PHQCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARRYR+G H   
Sbjct: 61  TFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRQGVHTEY 120

Query: 171 LISL 174
           +ISL
Sbjct: 121 IISL 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853112|ref|XP_002894437.1| hypothetical protein ARALYDRAFT_892366 [Arabidopsis lyrata subsp. lyrata] gi|297340279|gb|EFH70696.1| hypothetical protein ARALYDRAFT_892366 [Arabidopsis lyrata subsp. lyrata]

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 107/178 (60%), Positives = 129/178 (72%), Gaps = 16/178 (8%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGS-WAG 59
           M L  S LSRRIS SF   H+               ++  S S +S    ++ +GS W+ 
Sbjct: 1   MPLSRSLLSRRISNSFRFHHQGE------------TTAPESDSYESIPPPSNMAGSSWSA 48

Query: 60  LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFL-SGKITFPSCL 118
           +LPELLGEIIRRVE TEDSWP R++VV CACV K+WREIT+D  +S  L SGKITFPSCL
Sbjct: 49  MLPELLGEIIRRVEETEDSWPQRRDVVTCACVSKKWREITQDFARSSSLNSGKITFPSCL 108

Query: 119 KQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH--ILISL 174
           K PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA+   +ISL
Sbjct: 109 KLPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISL 166

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438923|ref|XP_004137237.1| PREDICTED: tubby-like F-box protein 7-like [Cucumis sativus] gi|449483168|ref|XP_004156511.1| PREDICTED: tubby-like F-box protein 7-like [Cucumis sativus]

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/129 (70%), Positives = 109/129 (84%), Gaps = 2/129 (1%)

Query: 48  AAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPF 107
           + A+H   SW+ +LPELL EII+RVE  E  WP+RQNVV+CACVCKRWR+ITK++ ++  
Sbjct: 42  SGASHPQSSWSSMLPELLREIIQRVEAEEHGWPNRQNVVSCACVCKRWRDITKEVARATP 101

Query: 108 LSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRG 167
            SGKITFPSCLKQPGP + PHQCLI+RNKKTSTF+LYLALTPSF++KGKFLLAARRYR G
Sbjct: 102 HSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFFLYLALTPSFTDKGKFLLAARRYRHG 161

Query: 168 AH--ILISL 174
           AH   +ISL
Sbjct: 162 AHTEYIISL 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404413|ref|NP_564627.1| Tubby-like F-box protein 7 [Arabidopsis thaliana] gi|75249264|sp|Q93VI8.1|TLP7_ARATH RecName: Full=Tubby-like F-box protein 7; Short=AtTLP7 gi|13877767|gb|AAK43961.1|AF370146_1 unknown protein [Arabidopsis thaliana] gi|16323400|gb|AAL15194.1| unknown protein [Arabidopsis thaliana] gi|33413451|gb|AAM18187.1| tubby-like protein 7 [Arabidopsis thaliana] gi|332194803|gb|AEE32924.1| Tubby-like F-box protein 7 [Arabidopsis thaliana]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/176 (60%), Positives = 124/176 (70%), Gaps = 15/176 (8%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           M L  S LSRRIS SF   H+   ET      +S+   +  A           S SW+ +
Sbjct: 1   MPLSRSLLSRRISNSF-RFHQG--ETTTAPESESIPPPSNMAG----------SSSWSAM 47

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK 
Sbjct: 48  LPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKL 107

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH--ILISL 174
           PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA+   +ISL
Sbjct: 108 PGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISL 163

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7769867|gb|AAF69545.1|AC008007_20 F12M16.22 [Arabidopsis thaliana]

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/176 (60%), Positives = 124/176 (70%), Gaps = 15/176 (8%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           M L  S LSRRIS SF   H+   ET      +S+   +  A           S SW+ +
Sbjct: 168 MPLSRSLLSRRISNSF-RFHQG--ETTTAPESESIPPPSNMAG----------SSSWSAM 214

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK 
Sbjct: 215 LPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKL 274

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAH--ILISL 174
           PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA+   +ISL
Sbjct: 275 PGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISL 330

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2009610	379	TLP7 "AT1G53320" [Arabidopsis	0.560	0.303	0.743	1.1e-46
TAIR|locus:2036730	413	TLP6 "AT1G47270" [Arabidopsis	0.560	0.278	0.550	7.9e-30
TAIR|locus:2025327	455	TLP1 "AT1G76900" [Arabidopsis	0.521	0.235	0.574	1.3e-29
TAIR|locus:2062121	394	TLP2 "AT2G18280" [Arabidopsis	0.560	0.291	0.564	1.5e-28
TAIR|locus:2194686	429	TLP5 "AT1G43640" [Arabidopsis	0.531	0.254	0.531	3.5e-27
TAIR|locus:2032950	445	TLP10 "AT1G25280" [Arabidopsis	0.521	0.240	0.527	7.7e-27
TAIR|locus:2081101	380	TLP9 "AT3G06380" [Arabidopsis	0.556	0.3	0.533	1.5e-26
TAIR|locus:2180034	389	TLP11 "AT5G18680" [Arabidopsis	0.482	0.254	0.53	4.8e-23

TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 87/117 (74%), Positives = 100/117 (85%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             +LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK
Sbjct:    47 MLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLK 106

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHI--LISL 174
              PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA+   +ISL
Sbjct:   107 LPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISL 163

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 65/118 (55%), Positives = 87/118 (73%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL +II+R+E+ +  WP R++VVACA VCK WRE+TK++VK P LSG ITFP  L+
Sbjct:    72 LPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPISLR 131

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRR--GAHILISL 174
             QPGPR+ P QC I+R + T  + LYL L+P+ S +K K LL+A+R RR  GA  ++SL
Sbjct:   132 QPGPRDAPIQCFIKRERATGIYRLYLGLSPALSGDKSKLLLSAKRVRRATGAEFVVSL 189

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 62/108 (57%), Positives = 83/108 (76%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL ++I+R+E +E  WP R++VVACA VC+ WR++ K+IV+SP LSGKITFP  LK
Sbjct:    60 LPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLK 119

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRR 166
             QPGPR+   QC I+R+K   T++LYL L+P+   E GKFLL+A+R RR
Sbjct:   120 QPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRR 167

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 66/117 (56%), Positives = 80/117 (68%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL +II RVE +E +WP R  VV+CA VCK WR IT +IV+ P   GK+TFP  LK
Sbjct:    51 LPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGKLTFPISLK 110

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGA--HILISL 174
             QPGPR+ P QC I+RN+ T+T+ LY  L PS +E  K LLAARR RR      +ISL
Sbjct:   111 QPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATCTDFIISL 167

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 59/111 (53%), Positives = 82/111 (73%)

Query:    61 LPE-LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             LP  LL +++++++ +E +WP R+ VVACA VCK WR + KDIVKSP  SGK+TFP  LK
Sbjct:    58 LPAALLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLK 117

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAH 169
             QPGPR+   QC I+R+K   T++LYL+L+P+   E GKFLL+A+R RR  +
Sbjct:   118 QPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATY 168

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.7e-27, P = 7.7e-27
 Identities = 57/108 (52%), Positives = 80/108 (74%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL ++I+R+E +E +WP R++VVACA VC+ WR + ++IV  P + GK+TFP  LK
Sbjct:    62 LPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPVSLK 121

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRR 166
             QPGPR+   QC I+R+K   TF+L+L L+P+   E GKFLL+A+R RR
Sbjct:   122 QPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRR 169

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 63/118 (53%), Positives = 81/118 (68%)

Query:    61 LPE-LLGEIIRRVETTEDS-WPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCL 118
             LPE LL EI+ RVET +   WP R+NVVACA VC+ WR +TK+IV  P  S K+TFP  L
Sbjct:    36 LPEELLREILIRVETVDGGDWPSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISL 95

Query:   119 KQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGA--HILISL 174
             KQ GPR+   QC I+RN+ T +++LYL LT S ++ GKFLLAA + +R      +ISL
Sbjct:    96 KQSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISL 153

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 53/100 (53%), Positives = 70/100 (70%)

Query:    63 ELLGEIIRRVETTEDS-WPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQP 121
             ELL EI+ RVE  +   WP R++VVACA VC+ WR +  + V  P +S K+TFP  LKQP
Sbjct:    45 ELLREILIRVEAADGGGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQP 104

Query:   122 GPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAA 161
             GPR+   QC I+RN+ T +++LYL LT S ++ GKFLLAA
Sbjct:   105 GPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAA 144


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       175   0.00078  109 3  11 22  0.37    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  151 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.07u 0.12s 13.19t   Elapsed:  00:00:01
  Total cpu time:  13.07u 0.12s 13.19t   Elapsed:  00:00:01
  Start:  Sat May 11 08:06:13 2013   End:  Sat May 11 08:06:14 2013

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
pfam01167	243	pfam01167, Tub, Tub family	2e-07

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKG--KFLLAARRYRRG--AHILISL 174
           P PR    QC I R+K    + L+         E G  KFLLAAR+ +R   ++ LISL
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISL 59

Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
KOG2502	355	consensus Tub family proteins [General function pr	100.0
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	99.85
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.28
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	98.1
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.93
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.84
KOG2997	366	consensus F-box protein FBX9 [General function pre	97.02
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	89.62

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=100.00  E-value=7.1e-50  Score=363.02  Aligned_cols=134  Identities=50%  Similarity=0.835  Sum_probs=131.1

Q ss_pred             CCCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHhhcCCCCCCcccccccccCCCCCCCCeeeEEEe
Q 028711           55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRR  134 (205)
Q Consensus        55 ~~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~eiv~~pe~~gk~tFP~sLkqPgPR~~~iQCfIkR  134 (205)
                      +.|++||||+|+|||+|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||++|+||||+|.++||||+|
T Consensus        43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R  122 (355)
T KOG2502|consen   43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR  122 (355)
T ss_pred             chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEeecCCCCCC--CCCeEEEeccccCCCCee--EEeeCCCCc----cccceeec-c
Q 028711          135 NKKTSTFYLYLALTPSFS--EKGKFLLAARRYRRGAHI--LISLGQTLQ----FTTVGRLT-M  188 (205)
Q Consensus       135 dK~~~tY~LyL~Ls~~~~--d~GKFLLAARKrRrstts--lISlD~~Dl----~~yIGKLR-n  188 (205)
                      ||+|++||||+++.+++.  |+|||||||||+||+||+  |||+|++||    ++|||||| |
T Consensus       123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN  185 (355)
T KOG2502|consen  123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSN  185 (355)
T ss_pred             ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeeecc
Confidence            999999999999999754  789999999999999999  999999999    99999999 7

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=99.85  E-value=1.5e-22  Score=175.44  Aligned_cols=68  Identities=44%  Similarity=0.597  Sum_probs=52.3

Q ss_pred             CCCCCCCeeeEEEecCCCceEEEeecCCCCC-CCCCeEEEeccccCCCCee--EEeeCCCCc----cccceeec-c
Q 028711          121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKGKFLLAARRYRRGAHI--LISLGQTLQ----FTTVGRLT-M  188 (205)
Q Consensus       121 PgPR~~~iQCfIkRdK~~~tY~LyL~Ls~~~-~d~GKFLLAARKrRrstts--lISlD~~Dl----~~yIGKLR-n  188 (205)
                      |||+|++|||||+|||+|++|+||++++..+ .++|+|||||||+++++|+  |||+|++||    ++|||||| |
T Consensus         1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsN   76 (246)
T PF01167_consen    1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSN   76 (246)
T ss_dssp             B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-
T ss_pred             CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeeccc
Confidence            8999999999999999998655554444332 4899999999999999988  999999999    89999999 7

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.28  E-value=2.4e-07  Score=60.60  Aligned_cols=36  Identities=31%  Similarity=0.635  Sum_probs=30.7

Q ss_pred             CCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHH
Q 028711           57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (205)
Q Consensus        57 Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~  100 (205)
                      |..||+|+|.+|+..++       . +|+..|+.|||.|+.++.
T Consensus         1 i~~LP~Eil~~If~~L~-------~-~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLD-------P-RDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS--------H-HHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCC-------H-HHHHHHHHHHHHHHHHHC
Confidence            78999999999999993       3 379999999999999984

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=98.10  E-value=3.5e-06  Score=78.36  Aligned_cols=41  Identities=24%  Similarity=0.528  Sum_probs=37.9

Q ss_pred             CCCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHh
Q 028711           55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI  102 (205)
Q Consensus        55 ~~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~ei  102 (205)
                      ..|+.||+|||+.|..||       |++-|++..++||++||..+...
T Consensus         2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~   42 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGV   42 (373)
T ss_pred             CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccc
Confidence            469999999999999999       99999999999999999987643

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=97.93  E-value=1.3e-06  Score=56.56  Aligned_cols=39  Identities=26%  Similarity=0.520  Sum_probs=31.6

Q ss_pred             CCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHh
Q 028711           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI  102 (205)
Q Consensus        56 ~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~ei  102 (205)
                      .|.+||+|++.+|+.+++.        +++++|+.||++|+.++.+.
T Consensus         2 ~~~~LP~~il~~Il~~l~~--------~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDP--------KDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-H--------HHHHHHCTT-HHHHHHHTTH
T ss_pred             CHHHCCHHHHHHHHHHCcH--------HHHHHHHHHhhHHHHHHcCC
Confidence            4789999999999999944        46999999999999998654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.84  E-value=3.8e-06  Score=51.81  Aligned_cols=34  Identities=29%  Similarity=0.655  Sum_probs=30.5

Q ss_pred             CCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHH
Q 028711           60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (205)
Q Consensus        60 lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~e  101 (205)
                      ||+|++.+|+.++       +. +++.+|+.||++|+.++.+
T Consensus         1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence            7999999999999       55 7899999999999998853

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=97.02  E-value=0.00065  Score=63.46  Aligned_cols=98  Identities=20%  Similarity=0.271  Sum_probs=63.0

Q ss_pred             CCCCCC---CCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHhh-------cCCCC-CCcccc--------
Q 028711           54 SGSWAG---LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV-------KSPFL-SGKITF--------  114 (205)
Q Consensus        54 ~~~Wa~---lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~eiv-------~~pe~-~gk~tF--------  114 (205)
                      |++|-+   ||+|+|-.||+++-.+-   =.-++.+.||+|||.|+-.+.+=.       +.=+. ++++..        
T Consensus       101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~  177 (366)
T KOG2997|consen  101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYY  177 (366)
T ss_pred             chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHH
Confidence            677866   99999999999984321   123567899999999877663210       00001 122221        


Q ss_pred             ----cccccCCCCCCCCeeeEEEec---CCCc-------------eEEEeecCCCCCCCCCeEEEe
Q 028711          115 ----PSCLKQPGPREFPHQCLIRRN---KKTS-------------TFYLYLALTPSFSEKGKFLLA  160 (205)
Q Consensus       115 ----P~sLkqPgPR~~~iQCfIkRd---K~~~-------------tY~LyL~Ls~~~~d~GKFLLA  160 (205)
                          -+.|++  ||--.--|+|.++   +.|.             |||-|+-    +-++|+||+-
T Consensus       178 ~SWR~Mfl~R--pRvrFdG~YIS~~tYiR~G~~~~~~~~~PVHlV~YYRYiR----FyP~G~~l~~  237 (366)
T KOG2997|consen  178 TSWREMFLER--PRVRFDGVYISKTTYIRQGENSLDSFYRPVHLVEYYRYIR----FYPDGHVLML  237 (366)
T ss_pred             hHHHHHHhhC--cceeecceEEEEEeEeecCchhhhhhcCcceeeEEEEEEE----ecCCCcEEEE
Confidence                234667  6666667898887   3332             8999987    4678888863

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=89.62  E-value=0.092  Score=49.84  Aligned_cols=63  Identities=25%  Similarity=0.426  Sum_probs=46.9

Q ss_pred             CCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHhh--cCCCCCCcccccccccCCCCCCC
Q 028711           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV--KSPFLSGKITFPSCLKQPGPREF  126 (205)
Q Consensus        56 ~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~eiv--~~pe~~gk~tFP~sLkqPgPR~~  126 (205)
                      .|.+||.|+|.+|+.-+        ..++....++||++|..++.+--  ......||.--|.+|-+=--|+.
T Consensus        97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV  161 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGV  161 (419)
T ss_pred             CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCe
Confidence            39999999999999877        56789999999999999886532  33445566666666655444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	1e-13
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	2e-12
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score = 66.7 bits (162), Expect = 1e-13
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 118 LKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGK-FLLAARRYRRG--AHILISL 174
           + +P P+    +C + R+KK     +Y +       + K FLLA R+ +R   A+ LIS+
Sbjct: 5   VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 64

Query: 175 GQT 177
             T
Sbjct: 65  DPT 67

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score = 63.7 bits (154), Expect = 2e-12
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 118 LKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGK-FLLAARRYRRG--AHILISL 174
           + +P P+    +C + R+KK     +Y +       + K FLLA R+ +R   A+ LIS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 175 GQT 177
             T
Sbjct: 89  DPT 91

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 13  SRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRV 72
             S     ++S E     A     +             A +    A L   LL  ++  +
Sbjct: 7   PESVSHPEEASPEEQPEEAGAEASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAEL 66

Query: 73  ETTEDSWPHRQNVVACACVCKRWREITKD 101
                  P  + V AC  VC RW+E+   
Sbjct: 67  -------PATELVQACRLVCLRWKELVDG 88

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 7/54 (12%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 56  SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLS 109
           S    + +++ +++  +   +D         + + VC+RW +I  +  +   ++
Sbjct: 12  SCVATVDDVIEQVMTYITDPKD-------RDSASLVCRRWFKIDSETREHVTMA 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	99.88
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	99.87
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.53
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.71
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.56
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.53
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.79
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.56
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.98
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	95.93

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=99.88  E-value=3.5e-23  Score=178.78  Aligned_cols=67  Identities=33%  Similarity=0.536  Sum_probs=58.4

Q ss_pred             cccCCCCCCCCeeeEEEecCCCc------eEEEeecCCCCCCCCCeEEEeccccCCCCee--EEeeCCCCc----cccce
Q 028711          117 CLKQPGPREFPHQCLIRRNKKTS------TFYLYLALTPSFSEKGKFLLAARRYRRGAHI--LISLGQTLQ----FTTVG  184 (205)
Q Consensus       117 sLkqPgPR~~~iQCfIkRdK~~~------tY~LyL~Ls~~~~d~GKFLLAARKrRrstts--lISlD~~Dl----~~yIG  184 (205)
                      .|+||||+|++|||+|+|||+|+      +||||++     .++++|||||||+|+++|+  |||+|++||    ++|||
T Consensus         4 fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvG   78 (246)
T 3c5n_A            4 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIG   78 (246)
T ss_dssp             GGGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEEE
T ss_pred             HcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEE
Confidence            48999999999999999999985      8999986     5678899999999999988  999999999    89999


Q ss_pred             eec-c
Q 028711          185 RLT-M  188 (205)
Q Consensus       185 KLR-n  188 (205)
                      ||| |
T Consensus        79 KLrsN   83 (246)
T 3c5n_A           79 KLRSN   83 (246)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            999 7

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=99.87  E-value=8.7e-23  Score=179.13  Aligned_cols=68  Identities=32%  Similarity=0.529  Sum_probs=59.5

Q ss_pred             ccccCCCCCCCCeeeEEEecCCCc------eEEEeecCCCCCCCCCeEEEeccccCCCCee--EEeeCCCCc----cccc
Q 028711          116 SCLKQPGPREFPHQCLIRRNKKTS------TFYLYLALTPSFSEKGKFLLAARRYRRGAHI--LISLGQTLQ----FTTV  183 (205)
Q Consensus       116 ~sLkqPgPR~~~iQCfIkRdK~~~------tY~LyL~Ls~~~~d~GKFLLAARKrRrstts--lISlD~~Dl----~~yI  183 (205)
                      -.|+||||+|++|||+|+|||+|+      +|||||+     .|+|+|||||||+|+++|+  |||+|++||    ++||
T Consensus        27 ~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yv  101 (276)
T 2fim_A           27 EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFI  101 (276)
T ss_dssp             TGGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEE
T ss_pred             HHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEE
Confidence            459999999999999999999985      9999996     5789999999999999988  999999999    8999


Q ss_pred             eeec-c
Q 028711          184 GRLT-M  188 (205)
Q Consensus       184 GKLR-n  188 (205)
                      |||| |
T Consensus       102 GKLrSN  107 (276)
T 2fim_A          102 GKLRSN  107 (276)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            9999 7

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.53  E-value=2.2e-08  Score=65.64  Aligned_cols=40  Identities=30%  Similarity=0.522  Sum_probs=33.1

Q ss_pred             CCCCCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHH
Q 028711           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (205)
Q Consensus        53 ~~~~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~  100 (205)
                      ++..|+.||.|+|..|+.++       | .++++.|+.|||+|+.++.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence            35679999999999999999       4 3689999999999999884

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.71  E-value=9.1e-06  Score=66.29  Aligned_cols=40  Identities=30%  Similarity=0.519  Sum_probs=34.3

Q ss_pred             CCCCCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHH
Q 028711           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (205)
Q Consensus        53 ~~~~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~  100 (205)
                      ++..|.+||+|+|..|+.++       +.+ +++.|+.||++|++++.
T Consensus         5 ~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~   44 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS   44 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred             ccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence            45789999999999999999       443 78999999999999983

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.56  E-value=1.5e-05  Score=69.74  Aligned_cols=42  Identities=19%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             CCCCCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHH
Q 028711           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (205)
Q Consensus        53 ~~~~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~e  101 (205)
                      +...|+.||+|+|..|+.+|       |..+++++|+.|||+|+.+...
T Consensus         2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~   43 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW   43 (594)
T ss_dssp             --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence            45789999999999999999       7778999999999999998433

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.53  E-value=2.5e-05  Score=68.99  Aligned_cols=40  Identities=33%  Similarity=0.628  Sum_probs=34.8

Q ss_pred             CCCCCCCCHHHHHHHHhhhcccCCCCCCcccee-eeccccchHHHHHHH
Q 028711           54 SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV-ACACVCKRWREITKD  101 (205)
Q Consensus        54 ~~~Wa~lppELL~dii~rve~se~~wP~rk~vV-acA~VCr~WR~~~~e  101 (205)
                      ......||+|||.+||.+|       |.+ +++ .|++|||+||.++.+
T Consensus        48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~~   88 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVDG   88 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHTS
T ss_pred             ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhcC
Confidence            3467899999999999999       774 688 999999999999753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.79  E-value=0.00035  Score=58.43  Aligned_cols=41  Identities=20%  Similarity=0.335  Sum_probs=35.2

Q ss_pred             CCCCCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHH
Q 028711           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (205)
Q Consensus        53 ~~~~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~e  101 (205)
                      ..+-.+.||+|++..||..|       + -+++..|+.|||.|+.++.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l-------~-~~~l~~~~~v~~~~~~~~~~   55 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFL-------E-PKDLLQAAQTCRYWRILAED   55 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTS-------C-HHHHHHHTTSCHHHHHHHTC
T ss_pred             cCChhHHCCHHHHHHHHHhC-------C-HHHHHHHHHHhHHHHhhcCc
Confidence            45678999999999999999       3 36799999999999998753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.56  E-value=0.00045  Score=57.51  Aligned_cols=41  Identities=15%  Similarity=0.289  Sum_probs=35.6

Q ss_pred             CCCCCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHH
Q 028711           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (205)
Q Consensus        53 ~~~~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~e  101 (205)
                      +.+-++.||+|+|..|+..|       |. ++++.|+.|||.|+.++.+
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred             ccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence            45568889999999999999       44 4899999999999998865

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.09  E-value=0.0011  Score=55.58  Aligned_cols=40  Identities=23%  Similarity=0.482  Sum_probs=33.3

Q ss_pred             CCCCCCCCHH----HHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHH
Q 028711           54 SGSWAGLLPE----LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (205)
Q Consensus        54 ~~~Wa~lppE----LL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~e  101 (205)
                      .+--+.||+|    |+..|+..|+.        +++..|+.|||+|+.++.+
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~   51 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD   51 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence            3445679999    99999999943        6789999999999988853

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.98  E-value=0.0016  Score=57.05  Aligned_cols=38  Identities=13%  Similarity=0.485  Sum_probs=33.2

Q ss_pred             CCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHH
Q 028711           57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (205)
Q Consensus        57 Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~e  101 (205)
                      .+.||+|+|..|+.+|       +..+++++|+.|||+|+.+...
T Consensus        13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~~   50 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDSE   50 (592)
T ss_dssp             CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhhc
Confidence            4579999999999999       5568899999999999998543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=95.93  E-value=0.00084  Score=60.37  Aligned_cols=38  Identities=13%  Similarity=0.237  Sum_probs=33.5

Q ss_pred             CCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHH
Q 028711           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (205)
Q Consensus        56 ~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~e  101 (205)
                      -|.+||.|++..|+..|+.        +|+..||+|||.||.++.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D   41 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD   41 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred             hhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence            3778999999999999943        5799999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	2e-13
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	3e-04

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.0 bits (158), Expect = 2e-13
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 118 LKQPGPREFPHQCLIRRNKKTST---FYLYLALTPSFSEKGKFLLAARRYRRG--AHILI 172
             +P P+    +C I R+KK      F  Y         K  FLLA R+ ++   ++ LI
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLI 73

Query: 173 SLGQT 177
           S+  T
Sbjct: 74  SVDPT 78

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 8/45 (17%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101
           W  L  ELL  I   +   E        ++  + VCKRW  +  D
Sbjct: 1   WDSLPDELLLGIFSCLCLPE--------LLKVSGVCKRWYRLASD 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	99.83
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.48
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.84
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.67
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.98

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=6.8e-22  Score=170.72  Aligned_cols=68  Identities=32%  Similarity=0.471  Sum_probs=60.7

Q ss_pred             ccCCCCCCCCeeeEEEecCCCc------eEEEeecCCCCCCCCCeEEEeccccCCCCee--EEeeCCCCc----ccccee
Q 028711          118 LKQPGPREFPHQCLIRRNKKTS------TFYLYLALTPSFSEKGKFLLAARRYRRGAHI--LISLGQTLQ----FTTVGR  185 (205)
Q Consensus       118 LkqPgPR~~~iQCfIkRdK~~~------tY~LyL~Ls~~~~d~GKFLLAARKrRrstts--lISlD~~Dl----~~yIGK  185 (205)
                      |.||||+|++|||+|+|||+++      +|+|||..   ..++++|||||||+|++|++  |||+|++||    ++||||
T Consensus        14 l~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~---~~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~yvGK   90 (265)
T d1c8za_          14 ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDR---EDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGK   90 (265)
T ss_dssp             HHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEEC---TTSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCCCSEE
T ss_pred             hcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEcc---CCCceeEEEEEeeecCCCcceEEEEccHHHhcccccceeEE
Confidence            8999999999999999999987      57888762   13356799999999999999  999999999    999999


Q ss_pred             ec-c
Q 028711          186 LT-M  188 (205)
Q Consensus       186 LR-n  188 (205)
                      || |
T Consensus        91 lrSN   94 (265)
T d1c8za_          91 LRSN   94 (265)
T ss_dssp             EEEC
T ss_pred             eecc
Confidence            99 7

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.6e-08  Score=63.51  Aligned_cols=36  Identities=31%  Similarity=0.586  Sum_probs=32.6

Q ss_pred             CCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHH
Q 028711           57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (205)
Q Consensus        57 Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~  100 (205)
                      |.+||.|++..|+.+|       |. ++++.|+.|||+|++++.
T Consensus         1 f~~LP~eil~~If~~L-------~~-~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCL-------CL-PELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTS-------CG-GGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhC
Confidence            8899999999999999       43 579999999999999884

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.5e-06  Score=60.97  Aligned_cols=41  Identities=22%  Similarity=0.376  Sum_probs=34.7

Q ss_pred             CCCCCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHH
Q 028711           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (205)
Q Consensus        53 ~~~~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~e  101 (205)
                      +.+-=+.||+|++..|+..|+.        +++++||+|||.|++++.+
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~--------~dL~~~~~vcr~w~~l~~~   55 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAED   55 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHTC
T ss_pred             ccCChhhCCHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHCC
Confidence            4455678999999999999933        5899999999999999854

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=2.6e-06  Score=60.35  Aligned_cols=38  Identities=16%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             CCCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHH
Q 028711           55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (205)
Q Consensus        55 ~~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~  100 (205)
                      +-.++||+||+..|+..|       +. ++++.|+.||++|+.++.
T Consensus         4 D~~~~LP~Ell~~I~s~L-------d~-~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTS-------CH-HHHHHHTTTCHHHHHHHH
T ss_pred             CchhhCCHHHHHHHHHCC-------CH-HHHHHHHHHHHHHHHHHH
Confidence            345689999999999999       44 589999999999999874

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=7.4e-05  Score=53.79  Aligned_cols=38  Identities=24%  Similarity=0.499  Sum_probs=31.4

Q ss_pred             CCCCCC----HHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHH
Q 028711           56 SWAGLL----PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (205)
Q Consensus        56 ~Wa~lp----pELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~e  101 (205)
                      -=++||    +|++..|+..|+.        +++..||.|||.|++++.+
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~--------~dL~~~s~Vck~W~~l~~d   51 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD   51 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHcC
Confidence            334566    5999999999944        5899999999999999864