Citrus Sinensis ID: 028719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
METVPTATAATAEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRPSSSDATSSED
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
metvptataataedfsssssstsptaaISRWKYNVSRRYQHlldksvphvLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMgflspqidpeysdgptlptrgsdefrpfvrrlpefkfwycVTRSFCIGFVLTffsafdvpvfWPILLFYWLMLFTLTMRRQIMHMIKYryvpfslgkqrydgkrpsssdatssed
Flexible Loop (DISEMBL)
metvptataataedfsssssstsptaAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPfslgkqrydgkrpsssdatssed
Low Complexity Region (SEG)
METVPtataataedfsssssstsptaaisRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRPSSSDATSSED
Disordered region (IsUnstruct)
**************************AISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQI*****************FRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLG*******************
Disordered Region (DISOPRED)
******************************WKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQI********************FVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSL********************
Disordered Region (DISEMBL)
***************************ISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ*****************
Disordered Region (DISPRO)
************************TAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP****GPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLG*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METVPTATAATAEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRPSSSDATSSED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q9ZWI7	212	Protein RER1C OS=Arabidop	yes	no	0.921	0.891	0.656	4e-68
O48670	191	Protein RER1A OS=Arabidop	no	no	0.902	0.968	0.632	2e-67
O48671	195	Protein RER1B OS=Arabidop	no	no	0.921	0.969	0.596	4e-65
A5PJ65	196	Protein RER1 OS=Bos tauru	yes	no	0.931	0.974	0.517	8e-55
Q5R5U4	196	Protein RER1 OS=Pongo abe	yes	no	0.931	0.974	0.512	2e-54
O15258	196	Protein RER1 OS=Homo sapi	yes	no	0.931	0.974	0.512	2e-54
Q498C8	196	Protein RER1 OS=Rattus no	yes	no	0.892	0.933	0.524	3e-54
Q9CQU3	196	Protein RER1 OS=Mus muscu	yes	no	0.892	0.933	0.524	3e-54
Q5ZHM5	196	Protein RER1 OS=Gallus ga	yes	no	0.892	0.933	0.524	8e-54
Q9ZPV7	221	Protein RER1D OS=Arabidop	no	no	0.941	0.873	0.465	7e-53

>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1

 Score =  257 bits (657), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 155/192 (80%), Gaps = 3/192 (1%)

Query: 13  EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
           +D   SS S+SP  A++R  +  S+R QHLLDK+VPHVL+RW+ CL VV IY VRVY V+
Sbjct: 22  DDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVE 81

Query: 73  GFYIITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYC 130
           GFYIITY +GIYLLNL++ FLSPQ DPE S   G +LPTR SDE+RPFVRRLPEFKFW  
Sbjct: 82  GFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLS 141

Query: 131 VTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRY 190
           + R+F IGF++TFF  FDVPVFWPILLFYW+MLF LTMR+QI HMIKYRYVPFS GK++Y
Sbjct: 142 IIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY 201

Query: 191 DGKRPSSSDATS 202
            GK+P+ ++++ 
Sbjct: 202 -GKKPAPTESSE 212

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1

 Score =  254 bits (650), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/188 (63%), Positives = 143/188 (76%), Gaps = 3/188 (1%)

Query: 16  SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
            S   S S    + +  +   R YQH LDK+ PH  +RW+  L V  IY +RVY +QGFY
Sbjct: 3   ESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFY 62

Query: 76  IITYGLGIYLLNLLMGFLSPQIDPE---YSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVT 132
           II YGLGIYLLNLL+GFLSP +DPE    SDGP+LPTRGSDEF+PF+RRLPEFKFWY +T
Sbjct: 63  IIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMT 122

Query: 133 RSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDG 192
           ++FCI F++TFFS FDVPVFWPILL YW++LF LTMRRQI HMIKY+Y+PFS GKQ+Y G
Sbjct: 123 KAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKYGG 182

Query: 193 KRPSSSDA 200
           +  S S A
Sbjct: 183 RSSSGSRA 190

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2

 Score =  247 bits (631), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 144/191 (75%), Gaps = 2/191 (1%)

Query: 16  SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
            S   S S    + +  +   R YQ+ LDK+ PH  +RW+  L    IY +RVY + GFY
Sbjct: 3   GSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFY 62

Query: 76  IITYGLGIYLLNLLMGFLSPQIDPEY--SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTR 133
           II+YGLGIYLLNLL+GFLSP +DPE   SDG TLPTRGSDEF+PF+RRLPEFKFWY +T+
Sbjct: 63  IISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTK 122

Query: 134 SFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 193
           +FCI F++TFFS FDVPVFWPILL YW++LF LTMRRQI HMIK++Y+PFS+GKQ+Y G+
Sbjct: 123 AFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYSGR 182

Query: 194 RPSSSDATSSE 204
           + S++    S 
Sbjct: 183 KSSANSGGGSR 193

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2

 Score =  213 bits (542), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 101/195 (51%), Positives = 134/195 (68%), Gaps = 4/195 (2%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS PH   RWVV L +  IY +RVYL+
Sbjct: 2   SEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           W+  T+   +  V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181

Query: 188 QRYDGKRPSSSDATS 202
           + Y GK  +     S
Sbjct: 182 RTYKGKEDAGKAFAS 196

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Bos taurus (taxid: 9913)

>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/195 (51%), Positives = 135/195 (69%), Gaps = 4/195 (2%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+
Sbjct: 2   SEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           W+  T+   +  V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181

Query: 188 QRYDGKRPSSSDATS 202
           +RY GK  +     S
Sbjct: 182 RRYRGKEDAGKAFAS 196

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Pongo abelii (taxid: 9601)

>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/195 (51%), Positives = 135/195 (69%), Gaps = 4/195 (2%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+
Sbjct: 2   SEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           W+  T+   +  V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181

Query: 188 QRYDGKRPSSSDATS 202
           +RY GK  +     S
Sbjct: 182 RRYRGKEDAGKAFAS 196

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Homo sapiens (taxid: 9606)

>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1

 Score =  211 bits (536), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/187 (52%), Positives = 133/187 (71%), Gaps = 4/187 (2%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+
Sbjct: 2   SEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           W+  T+   +  + TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181

Query: 188 QRYDGKR 194
           +RY GK 
Sbjct: 182 RRYKGKE 188

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1

 Score =  211 bits (536), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/187 (52%), Positives = 133/187 (71%), Gaps = 4/187 (2%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RWVV L +  +Y +RVYL+
Sbjct: 2   SEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           W+  T+   +  + TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181

Query: 188 QRYDGKR 194
           +RY GK 
Sbjct: 182 RRYKGKE 188

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Mus musculus (taxid: 10090)

>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1

 Score =  209 bits (533), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 98/187 (52%), Positives = 132/187 (70%), Gaps = 4/187 (2%)

Query: 12  AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
           +E  S   S     + + R+   + + YQ  LDKS P+   RW+V L +  IY +RVYL+
Sbjct: 2   SEGDSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLL 61

Query: 72  QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
           QG+YI+TY LGIY LNL + FLSP++DP    +  DGP+LPTR ++EFRPF+RRLPEFKF
Sbjct: 62  QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKF 121

Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
           W+  T+   +    TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181

Query: 188 QRYDGKR 194
           ++Y GK 
Sbjct: 182 RKYKGKE 188

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Gallus gallus (taxid: 9031)

>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2

 Score =  206 bits (525), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 100/215 (46%), Positives = 142/215 (66%), Gaps = 22/215 (10%)

Query: 13  EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
           E  S + + T   + +++W+   S+ +Q+ LD+S P+++ RW+V L    IY  RVY V 
Sbjct: 4   EPGSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVY 63

Query: 73  GFYIITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYC 130
           G+++I+YGL  Y+LNLL+GFLSP++DPE    D  +LP   SDE++PFVRRLPEFKFWY 
Sbjct: 64  GYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYA 123

Query: 131 VTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK--- 187
            T++F + FV+TFFS  DVPVFWPILL YWL+L++LTM+R I+HM KYRY PF + K   
Sbjct: 124 ATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRKPVK 183

Query: 188 ---------------QRYDG--KRPSSSDATSSED 205
                          ++ DG   RPSSS+++   +
Sbjct: 184 LLKFLVNSVLTFLRLKKGDGGDDRPSSSNSSQGNE 218

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
255567873	206	rer1 protein, putative [Ricinus communis	0.926	0.922	0.747	7e-82
356496931	191	PREDICTED: protein RER1A-like [Glycine m	0.917	0.984	0.718	5e-80
388502768	191	unknown [Lotus japonicus]	0.912	0.979	0.734	1e-79
388509732	192	unknown [Medicago truncatula]	0.917	0.979	0.706	5e-79
224094278	200	predicted protein [Populus trichocarpa]	0.868	0.89	0.758	5e-78
225438813	204	PREDICTED: protein RER1A [Vitis vinifera	0.843	0.848	0.75	3e-76
224084390	204	predicted protein [Populus trichocarpa]	0.892	0.897	0.766	2e-74
356511897	198	PREDICTED: protein RER1A-like [Glycine m	0.936	0.969	0.668	4e-73
356563586	197	PREDICTED: protein RER1A-like [Glycine m	0.926	0.964	0.653	4e-71
449462214	194	PREDICTED: protein RER1A-like isoform 2	0.917	0.969	0.642	6e-71

>gi|255567873|ref|XP_002524914.1| rer1 protein, putative [Ricinus communis] gi|223535749|gb|EEF37411.1| rer1 protein, putative [Ricinus communis]

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 145/194 (74%), Positives = 169/194 (87%), Gaps = 4/194 (2%)

Query: 13  EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
           ED SS SS+  P   ISRW + VS+RYQHLLDK+VPHVL RW+ CL V  IYA+RVY VQ
Sbjct: 16  EDLSSLSST--PATVISRWTFTVSQRYQHLLDKTVPHVLRRWIACLVVALIYALRVYFVQ 73

Query: 73  GFYIITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVT 132
           GFYIITYGLGIY+LNLL+GFLSPQIDPE  DGPTLPTRGSDEFRPFVRRLPEFKFWY +T
Sbjct: 74  GFYIITYGLGIYMLNLLIGFLSPQIDPEVLDGPTLPTRGSDEFRPFVRRLPEFKFWYSIT 133

Query: 133 RSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDG 192
           ++FC+ F++TFF AF+VPVFWPILLFYW++LF LTMRRQIMHMIKY+YVPFS+GKQRY G
Sbjct: 134 KAFCVAFLMTFFDAFNVPVFWPILLFYWVLLFVLTMRRQIMHMIKYKYVPFSIGKQRY-G 192

Query: 193 KRPSSSDATS-SED 205
           K+ +S+D+ S S+D
Sbjct: 193 KKATSTDSISLSKD 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496931|ref|XP_003517318.1| PREDICTED: protein RER1A-like [Glycine max]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 135/188 (71%), Positives = 161/188 (85%)

Query: 17  SSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYI 76
            +    SP A ISRWK+ VS++YQH+LDK+ PHVL RW+ CL V ++Y +RVYLVQGFYI
Sbjct: 4   GAGDDHSPEAVISRWKFAVSQQYQHMLDKTTPHVLRRWIGCLVVAAVYVLRVYLVQGFYI 63

Query: 77  ITYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFC 136
           ++Y LGIY+LNLL+GFLSPQ+DPE SDGPTLPTRGSDEFRPFVRRLPEFKFWY +T++FC
Sbjct: 64  VSYALGIYILNLLIGFLSPQVDPEISDGPTLPTRGSDEFRPFVRRLPEFKFWYSITKAFC 123

Query: 137 IGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRPS 196
           I FV+TFFSAFDVPVFWPILLFYW++LFTLTMRRQI HMIKY+YVPFS GK RYDGKR +
Sbjct: 124 IAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKLRYDGKRAA 183

Query: 197 SSDATSSE 204
              + + +
Sbjct: 184 EGTSPTMD 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502768|gb|AFK39450.1| unknown [Lotus japonicus]

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 138/188 (73%), Positives = 159/188 (84%), Gaps = 1/188 (0%)

Query: 19  SSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIIT 78
               SP  AISRWK  +S++YQH+LDK+ PHVL RWV CL V SIY +RVYLV+GFYI++
Sbjct: 4   GGEVSPETAISRWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYIVS 63

Query: 79  YGLGIYLLNLLMGFLSPQIDPE-YSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCI 137
           Y LGIY+LNLL+GFLSPQ+DPE Y DGPTLPT GSDEFRPFVRRLPEFKFWY +T++FCI
Sbjct: 64  YALGIYILNLLIGFLSPQVDPEVYDDGPTLPTSGSDEFRPFVRRLPEFKFWYSITKAFCI 123

Query: 138 GFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRPSS 197
            FV+TFFSAFDVPVFWPILLFYW++LFTLTMRRQI HMIKY+YVPFS GKQRY GKR S+
Sbjct: 124 AFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQRYTGKRASA 183

Query: 198 SDATSSED 205
              +  ED
Sbjct: 184 ESKSLPED 191

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509732|gb|AFK42932.1| unknown [Medicago truncatula]

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 135/191 (70%), Positives = 162/191 (84%), Gaps = 3/191 (1%)

Query: 18  SSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYII 77
           ++  TSP AAI+RWK+  SRRYQH+LDKS PHV  RW+ CL V  +Y +RVY+VQGFY++
Sbjct: 2   NTEDTSPAAAITRWKFEASRRYQHILDKSTPHVSQRWLGCLVVALVYVLRVYIVQGFYVV 61

Query: 78  TYGLGIYLLNLLMGFLSPQIDPEYSD---GPTLPTRGSDEFRPFVRRLPEFKFWYCVTRS 134
           +YGLGIY+LNLL+GFLSPQ+DPE  D   GP+LPT GSDEFRPFVRRLPEFKFWY +T++
Sbjct: 62  SYGLGIYILNLLIGFLSPQVDPEILDADNGPSLPTSGSDEFRPFVRRLPEFKFWYSITKA 121

Query: 135 FCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKR 194
           FCI FV+TFFSAFDVPVFWPILLFYW++LFTLTMRRQI HMIKY+YVPFS GKQRYD KR
Sbjct: 122 FCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIAHMIKYKYVPFSFGKQRYDRKR 181

Query: 195 PSSSDATSSED 205
            S+   + S++
Sbjct: 182 ASAESTSLSDN 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094278|ref|XP_002310121.1| predicted protein [Populus trichocarpa] gi|222853024|gb|EEE90571.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 135/178 (75%), Positives = 156/178 (87%)

Query: 23  SPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLG 82
           +P   ISRW + VS+R+QH LDK+VP++L+RW+ CL VV IY +RVYLVQGFYIITYGLG
Sbjct: 21  TPATTISRWSFVVSQRFQHFLDKTVPYILYRWIACLIVVLIYVIRVYLVQGFYIITYGLG 80

Query: 83  IYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLT 142
           IYLLNLL+GFLSPQIDPE  DGP+LPTRGSDEFRPFVRRL EFKFWY +T++FCI FV+T
Sbjct: 81  IYLLNLLIGFLSPQIDPEIHDGPSLPTRGSDEFRPFVRRLLEFKFWYSITKAFCIAFVMT 140

Query: 143 FFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRPSSSDA 200
           FFS FDVPVFWPILL YW++LF LTMRRQI HMIKYRYVPFS GKQRYDGK+  S+D+
Sbjct: 141 FFSVFDVPVFWPILLTYWVVLFVLTMRRQISHMIKYRYVPFSTGKQRYDGKKAPSTDS 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438813|ref|XP_002283333.1| PREDICTED: protein RER1A [Vitis vinifera] gi|296082366|emb|CBI21371.3| unnamed protein product [Vitis vinifera]

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 132/176 (75%), Positives = 154/176 (87%), Gaps = 3/176 (1%)

Query: 30  RWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLL 89
           RW +++SR+YQHLLDKS PH+L+RW+   A+  IY VRVY VQGFYI++YGLGIY+LNLL
Sbjct: 25  RWTHDISRKYQHLLDKSTPHILNRWIGFFAIAFIYIVRVYFVQGFYIVSYGLGIYILNLL 84

Query: 90  MGFLSPQIDPEYS---DGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSA 146
           +GFLSPQ+DPE     DGPTLPTRGSDEFRPFVRRLPEFKFWY +T++FCI FV+TFFS 
Sbjct: 85  IGFLSPQVDPEIQELVDGPTLPTRGSDEFRPFVRRLPEFKFWYSITKAFCIAFVMTFFSV 144

Query: 147 FDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRPSSSDATS 202
           FDVPVFWPILLFYW++LFTLTMRRQIMHMIKY+YVPFS GKQRY GKR SS++  S
Sbjct: 145 FDVPVFWPILLFYWMVLFTLTMRRQIMHMIKYKYVPFSFGKQRYGGKRTSSTEDMS 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084390|ref|XP_002307281.1| predicted protein [Populus trichocarpa] gi|118482911|gb|ABK93369.1| unknown [Populus trichocarpa] gi|222856730|gb|EEE94277.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 141/184 (76%), Positives = 159/184 (86%), Gaps = 1/184 (0%)

Query: 23  SPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLG 82
           +P   ISRW + VSRRYQH LDK+VPH+L+RW+ CL VV IYA+RVYLVQGFYI+TYGLG
Sbjct: 21  TPATTISRWSFAVSRRYQHFLDKTVPHILYRWISCLVVVLIYAIRVYLVQGFYIVTYGLG 80

Query: 83  IYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLT 142
           IYLLNLL+GFLSPQIDPE  DGPTLPTRGSDEFRPFVRRLPEFKFWY +T++ CI FV+T
Sbjct: 81  IYLLNLLIGFLSPQIDPEIHDGPTLPTRGSDEFRPFVRRLPEFKFWYSITKACCIAFVMT 140

Query: 143 FFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKR-PSSSDAT 201
           FF  FDVPVFWPILL YW+MLF LTMRRQI HMIKYRYVPFS GKQRYDGK+ PS+  A 
Sbjct: 141 FFFVFDVPVFWPILLIYWVMLFLLTMRRQISHMIKYRYVPFSTGKQRYDGKKGPSTETAD 200

Query: 202 SSED 205
            S++
Sbjct: 201 LSKE 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511897|ref|XP_003524658.1| PREDICTED: protein RER1A-like [Glycine max]

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 131/196 (66%), Positives = 158/196 (80%), Gaps = 4/196 (2%)

Query: 14  DFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQG 73
           D      ++SPTA +SRWK+   R++QHLLDKS PHV  RW+   AV  +YA+RVYLVQG
Sbjct: 3   DTGGGGGASSPTATMSRWKFAAWRQFQHLLDKSTPHVGRRWLGFAAVALLYALRVYLVQG 62

Query: 74  FYIITYGLGIYLLNLLMGFLSPQIDPEY----SDGPTLPTRGSDEFRPFVRRLPEFKFWY 129
           FY+++YGLGIY+LNLL+GFLSPQ+DPE     +D PTLP+  SDEFRPFVRRLPEFKFWY
Sbjct: 63  FYVVSYGLGIYILNLLIGFLSPQVDPETVILDADVPTLPSTASDEFRPFVRRLPEFKFWY 122

Query: 130 CVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQR 189
            +T++FCI FV+TFFSAFDVPVFWPILLFYW++LF+LTMRRQI HMIKY+Y+PFS GKQR
Sbjct: 123 SITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFSLTMRRQISHMIKYKYLPFSSGKQR 182

Query: 190 YDGKRPSSSDATSSED 205
           YD KR      + SED
Sbjct: 183 YDVKRAPPEITSLSED 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563586|ref|XP_003550042.1| PREDICTED: protein RER1A-like [Glycine max]

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/196 (65%), Positives = 155/196 (79%), Gaps = 6/196 (3%)

Query: 16  SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
            +     SPTAA+SRWK+   R+YQHLLDKS PHV  RW+   AV  +Y +RVY V+GFY
Sbjct: 2   DTGGGGASPTAAMSRWKFAAWRQYQHLLDKSTPHVGRRWLGFAAVALLYLLRVYFVEGFY 61

Query: 76  IITYGLGIYLLNLLMGFLSPQIDPE----YSDGPTLPTRGSDEFRPFVRRLPEFKFWYCV 131
           +++YGLGIY+LNLL+GFLSPQ+DPE     +D P LP   SDEFRPFVRRLPEFKFWY +
Sbjct: 62  VVSYGLGIYILNLLIGFLSPQVDPETAILNADDPILPIAASDEFRPFVRRLPEFKFWYSI 121

Query: 132 TRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYD 191
           T++FCI FV+TFFS FDVPVFWPILLFYW++LF+LTMRRQI HMIKY+Y+PFS GKQRYD
Sbjct: 122 TKAFCIAFVMTFFSVFDVPVFWPILLFYWVVLFSLTMRRQISHMIKYKYLPFSSGKQRYD 181

Query: 192 GKR--PSSSDATSSED 205
            KR  P ++  + SED
Sbjct: 182 VKRAPPETTSLSVSED 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462214|ref|XP_004148836.1| PREDICTED: protein RER1A-like isoform 2 [Cucumis sativus] gi|449507345|ref|XP_004163005.1| PREDICTED: protein RER1A-like isoform 2 [Cucumis sativus]

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 122/190 (64%), Positives = 156/190 (82%), Gaps = 2/190 (1%)

Query: 18  SSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYII 77
              + S    +S+W+++VSR YQ+ LDK  PH ++RW+  L +V+IYA+RV+ VQGFYI+
Sbjct: 5   GGEAASAAGPLSQWQHDVSRLYQYYLDKITPHAVYRWIGTLFIVAIYALRVFYVQGFYIV 64

Query: 78  TYGLGIYLLNLLMGFLSPQIDPEY--SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSF 135
           +YGLGIY+LNLL+GFLSP +DPE   SDGP LPT+GSDEFRPF+RRLPEFKFWY  T++F
Sbjct: 65  SYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFRPFIRRLPEFKFWYSFTKAF 124

Query: 136 CIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRP 195
           CI FV+TFFS FDVPVFWPILL YW++LF LTMRRQI HMIKY+Y+PFS GKQ++ GK+P
Sbjct: 125 CIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYLPFSFGKQKHGGKKP 184

Query: 196 SSSDATSSED 205
           S+S   +S+D
Sbjct: 185 SASSVVTSDD 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2136373	191	ATRER1A "AT4G39220" [Arabidops	0.8	0.858	0.694	4.7e-64
TAIR|locus:2058583	212	ATRER1C1 "AT2G23310" [Arabidop	0.804	0.778	0.702	9.7e-64
TAIR|locus:2049354	195	RER1B "AT2G21600" [Arabidopsis	0.814	0.856	0.656	1e-61
UNIPROTKB|A5PJ65	196	RER1 "Protein RER1" [Bos tauru	0.756	0.790	0.603	4.4e-52
UNIPROTKB|I3LJC8	196	LOC100736849 "Uncharacterized	0.8	0.836	0.577	5.6e-52
UNIPROTKB|O15258	196	RER1 "Protein RER1" [Homo sapi	0.756	0.790	0.597	7.2e-52
MGI|MGI:1915080	196	Rer1 "RER1 retention in endopl	0.756	0.790	0.591	7.2e-52
RGD|1306324	196	Rer1 "RER1 retention in endopl	0.756	0.790	0.591	7.2e-52
UNIPROTKB|Q5ZHM5	196	RER1 "Protein RER1" [Gallus ga	0.756	0.790	0.591	1.9e-51
UNIPROTKB|F6XF58	196	RER1 "Uncharacterized protein"	0.756	0.790	0.584	6.5e-51

TAIR|locus:2136373 ATRER1A "AT4G39220" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 116/167 (69%), Positives = 137/167 (82%)

Query:    37 RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQ 96
             R YQH LDK+ PH  +RW+  L V  IY +RVY +QGFYII YGLGIYLLNLL+GFLSP 
Sbjct:    24 RIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPL 83

Query:    97 IDPE---YSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFW 153
             +DPE    SDGP+LPTRGSDEF+PF+RRLPEFKFWY +T++FCI F++TFFS FDVPVFW
Sbjct:    84 VDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFW 143

Query:   154 PILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRPSSSDA 200
             PILL YW++LF LTMRRQI HMIKY+Y+PFS GKQ+Y G+  S S A
Sbjct:   144 PILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKYGGRSSSGSRA 190

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2058583 ATRER1C1 "AT2G23310" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 118/168 (70%), Positives = 142/168 (84%)

Query:    36 SRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSP 95
             S+R QHLLDK+VPHVL+RW+ CL VV IY VRVY V+GFYIITY +GIYLLNL++ FLSP
Sbjct:    45 SQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSP 104

Query:    96 QIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFW 153
             Q DPE S   G +LPTR SDE+RPFVRRLPEFKFW  + R+F IGF++TFF  FDVPVFW
Sbjct:   105 QEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFW 164

Query:   154 PILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRPSSSDAT 201
             PILLFYW+MLF LTMR+QI HMIKYRYVPFS GK++Y GK+P+ ++++
Sbjct:   165 PILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY-GKKPAPTESS 211

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=NAS

GO:0045185 "maintenance of protein location" evidence=IGI

TAIR|locus:2049354 RER1B "AT2G21600" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 111/169 (65%), Positives = 138/169 (81%)

Query:    37 RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQ 96
             R YQ+ LDK+ PH  +RW+  L    IY +RVY + GFYII+YGLGIYLLNLL+GFLSP 
Sbjct:    24 RVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPL 83

Query:    97 IDPEY--SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             +DPE   SDG TLPTRGSDEF+PF+RRLPEFKFWY +T++FCI F++TFFS FDVPVFWP
Sbjct:    84 VDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWP 143

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRPSSSDATSS 203
             ILL YW++LF LTMRRQI HMIK++Y+PFS+GKQ+Y G++ S++    S
Sbjct:   144 ILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYSGRKSSANSGGGS 192

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

UNIPROTKB|A5PJ65 RER1 "Protein RER1" [Bos taurus (taxid:9913)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 96/159 (60%), Positives = 122/159 (76%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS PH   RWVV L +  IY +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  V TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFEAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 193
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+ Y GK
Sbjct:   149 ILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTYKGK 187

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

UNIPROTKB|I3LJC8 LOC100736849 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 97/168 (57%), Positives = 126/168 (75%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LD+S P+   RWVV L +  +Y VRVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDRSTPYTAVRWVVTLGLSFVYMVRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  V TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGVLVAMVCTFFEAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRPSSSDATS 202
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+ Y GK  S+   TS
Sbjct:   149 ILVMYFVMLFCITMKRQIKHMIKYRYIPFTHGKRTYRGKEDSAKTLTS 196

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O15258 RER1 "Protein RER1" [Homo sapiens (taxid:9606)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 95/159 (59%), Positives = 123/159 (77%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  V TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 193
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+RY GK
Sbjct:   149 ILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGK 187

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1915080 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 94/159 (59%), Positives = 123/159 (77%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  + TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 193
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+RY GK
Sbjct:   149 ILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=ISO

RGD|1306324 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 94/159 (59%), Positives = 123/159 (77%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +  + TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 193
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+RY GK
Sbjct:   149 ILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA;ISO

GO:0030173 "integral to Golgi membrane" evidence=IEA;ISO

UNIPROTKB|Q5ZHM5 RER1 "Protein RER1" [Gallus gallus (taxid:9031)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 94/159 (59%), Positives = 122/159 (76%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RW+V L +  IY +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPTR ++EFRPF+RRLPEFKFW+  T+   +    TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 193
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK++Y GK
Sbjct:   149 ILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRKYKGK 187

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

UNIPROTKB|F6XF58 RER1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 93/159 (58%), Positives = 121/159 (76%)

Query:    39 YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQID 98
             YQ  LDKS P+   RWVV L +  +Y +RVYL+QG+YI+TY LGIY LNL + FLSP++D
Sbjct:    29 YQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query:    99 P----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWP 154
             P    +  DGP+LPT+ ++EFRPF+RRLPEFKFW+  T+   +    TFF AF+VPVFWP
Sbjct:    89 PSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMACTFFEAFNVPVFWP 148

Query:   155 ILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 193
             IL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK+ Y GK
Sbjct:   149 ILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTYKGK 187

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CQU3	RER1_MOUSE	No assigned EC number	0.5240	0.8926	0.9336	yes	no
P25560	RER1_YEAST	No assigned EC number	0.4615	0.8634	0.9414	yes	no
Q5ZHM5	RER1_CHICK	No assigned EC number	0.5240	0.8926	0.9336	yes	no
Q5R5U4	RER1_PONAB	No assigned EC number	0.5128	0.9317	0.9744	yes	no
O15258	RER1_HUMAN	No assigned EC number	0.5128	0.9317	0.9744	yes	no
P52879	RER1_CAEEL	No assigned EC number	0.5085	0.8292	0.8900	yes	no
A5PJ65	RER1_BOVIN	No assigned EC number	0.5179	0.9317	0.9744	yes	no
Q9ZWI7	RER1C_ARATH	No assigned EC number	0.6562	0.9219	0.8915	yes	no
Q498C8	RER1_RAT	No assigned EC number	0.5240	0.8926	0.9336	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
pfam03248	175	pfam03248, Rer1, Rer1 family	7e-94
COG5249	180	COG5249, RER1, Golgi protein involved in Golgi-to-	3e-59

>gnl|CDD|202582 pfam03248, Rer1, Rer1 family

 Score =  271 bits (694), Expect = 7e-94
 Identities = 95/174 (54%), Positives = 123/174 (70%), Gaps = 7/174 (4%)

Query: 27  AISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLL 86
           A++R+   +SR YQ  LDK+ PH  +RW+  L ++ ++ +RV L QG+Y++ Y LGIYLL
Sbjct: 2   AVTRFTNKLSRTYQRYLDKTTPHTAYRWIFFLFLLFLFILRVILAQGWYVVCYALGIYLL 61

Query: 87  NLLMGFLSPQIDPEYSD-------GPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGF 139
           NL + FL+P+ DP           GP+LPT   DEFRPF+RRLPEFKFWY  TR+  I  
Sbjct: 62  NLFLAFLTPKFDPSLEQEDEDVEEGPSLPTSNDDEFRPFIRRLPEFKFWYSATRATVIAL 121

Query: 140 VLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 193
             TFFS FD+PVFWPILL Y+++LF LTMRRQI HMIKY+YVPF +GK +Y  K
Sbjct: 122 FCTFFSFFDIPVFWPILLMYFIILFFLTMRRQIKHMIKYKYVPFDIGKPKYGRK 175

RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex. Length = 175

>gnl|CDD|227574 COG5249, RER1, Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

 Score =  183 bits (466), Expect = 3e-59
 Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 4/158 (2%)

Query: 37  RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQ 96
             YQH LD+  P    RW +   +  ++ +R++   G+Y+I Y LGIYLLN  + FL+P+
Sbjct: 20  TLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPK 79

Query: 97  IDPEYS----DGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVF 152
            D  +     D         +EFRPF+RRLPEFKFWY  TR+  +  + ++F  FDVPVF
Sbjct: 80  FDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVF 139

Query: 153 WPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRY 190
           WPIL+ Y++ L   T RRQI HM KYRY PF +GK++Y
Sbjct: 140 WPILVVYFIFLVFYTARRQIQHMKKYRYNPFDIGKKKY 177

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
KOG1688	188	consensus Golgi proteins involved in ER retention	100.0
PF03248	176	Rer1: Rer1 family; InterPro: IPR004932 RER1 family	100.0
COG5249	180	RER1 Golgi protein involved in Golgi-to-ER retriev	100.0
PF09973	233	DUF2208: Predicted membrane protein (DUF2208); Int	85.44

>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.6e-89  Score=572.18  Aligned_cols=176  Identities=61%  Similarity=1.168  Sum_probs=171.5

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeccEEEeehhHHHHHHHHHHhhcCCCCCC
Q 028719           20 SSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP   99 (205)
Q Consensus        20 ~~~~~~~~~~~~~~k~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~YiVtY~LgIylLnlfi~FLtPk~Dp   99 (205)
                      ++++.++++.++.++++++||+||||+|||+..||+++++++++|++||+..|||||||||||||+||+||+|||||+||
T Consensus         9 ~~~~~a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfiaFLtPk~Dp   88 (188)
T KOG1688|consen    9 DSGGVASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIAFLTPKVDP   88 (188)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC---CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 028719          100 EY---SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMI  176 (205)
Q Consensus       100 ~l---~eg~~LP~~~~dEFRPFiRRLPEFkFW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMi  176 (205)
                      |+   +||+.||++++||||||||||||||||+++|||+++|+.||||++||+|||||||++||++||++||||||+|||
T Consensus        89 ~~~~~~dg~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~Y~i~lf~ltmrRqI~HMi  168 (188)
T KOG1688|consen   89 ELQDADDGPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLMYFIVLFFLTMRRQIAHMI  168 (188)
T ss_pred             hhhcccCCCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            97   789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccCCCCccccCCCCC
Q 028719          177 KYRYVPFSLGKQRYDGKRP  195 (205)
Q Consensus       177 KyrYvPf~~gK~~y~~~~~  195 (205)
                      ||||+||++||++|+++++
T Consensus       169 KyrY~Pf~~gK~~~~~~~~  187 (188)
T KOG1688|consen  169 KYRYIPFDIGKKKYGSHSD  187 (188)
T ss_pred             hhcccccccCchhhhcccc
Confidence            9999999999999987754

>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment

Probab=100.00  E-value=6.6e-87  Score=559.69  Aligned_cols=166  Identities=57%  Similarity=1.145  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeccEEEeehhHHHHHHHHHHhhcCCCCCCCC------
Q 028719           28 ISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEY------  101 (205)
Q Consensus        28 ~~~~~~k~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l------  101 (205)
                      ++++.++++++||+||||||||++.||+++++|+++|++||++.|||||||||||||+||+||+|||||+||++      
T Consensus         2 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~~   81 (176)
T PF03248_consen    2 VSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEED   81 (176)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCcccccccccc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999988      


Q ss_pred             -CCCCCCCC--CCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028719          102 -SDGPTLPT--RGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKY  178 (205)
Q Consensus       102 -~eg~~LP~--~~~dEFRPFiRRLPEFkFW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMiKy  178 (205)
                       |||+.||+  +++||||||+|||||||||++||||+++|++||||++||||||||||++|||+||++||||||+|||||
T Consensus        82 ~~~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~lf~~tm~~qI~hMiKy  161 (176)
T PF03248_consen   82 EEEGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVLFVLTMKRQIKHMIKY  161 (176)
T ss_pred             ccccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             35779999  899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccccCCC
Q 028719          179 RYVPFSLGKQRYDGK  193 (205)
Q Consensus       179 rYvPf~~gK~~y~~~  193 (205)
                      ||+|||+||++|++|
T Consensus       162 ~Y~Pf~~gK~~y~~~  176 (176)
T PF03248_consen  162 RYVPFDFGKKKYGRK  176 (176)
T ss_pred             CCCCccccchhccCC
Confidence            999999999999986

The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane

>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

Probab=100.00  E-value=1e-75  Score=484.50  Aligned_cols=175  Identities=42%  Similarity=0.868  Sum_probs=161.9

Q ss_pred             hhccCCCCCCCchhHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeccEEEeehhHHHHHHHHHHhh
Q 028719           13 EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGF   92 (205)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~k~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~YiVtY~LgIylLnlfi~F   92 (205)
                      ||+|+++..     .+.+..+.++++||+||||.+||+..||..+++|+++||.||...+|||+|||+|||||||+|++|
T Consensus         1 md~~~~~~~-----n~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaF   75 (180)
T COG5249           1 MDYDSSDTM-----NLITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAF   75 (180)
T ss_pred             CCchhHHHH-----HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence            456554422     356678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCC----CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHH
Q 028719           93 LSPQIDPEY----SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTM  168 (205)
Q Consensus        93 LtPk~Dp~l----~eg~~LP~~~~dEFRPFiRRLPEFkFW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm  168 (205)
                      ||||+||+.    ||+....+++|+|||||||||||||||+++||||++|++.|+|.+||||||||||++|||+|+..||
T Consensus        76 LTPKfdms~eq~e~d~eieeg~kd~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l~f~t~  155 (180)
T COG5249          76 LTPKFDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTA  155 (180)
T ss_pred             hCCCCcccHhhhccccccccccccchhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHH
Confidence            999999998    3344555679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCccccCC
Q 028719          169 RRQIMHMIKYRYVPFSLGKQRYDG  192 (205)
Q Consensus       169 ~rqI~HMiKyrYvPf~~gK~~y~~  192 (205)
                      |||||||+||||+||+.||++|++
T Consensus       156 rRqIqHM~KYrY~PfdigKkky~s  179 (180)
T COG5249         156 RRQIQHMKKYRYNPFDIGKKKYKS  179 (180)
T ss_pred             HHHHHHHHHhcCCchhhhhhhhcc
Confidence            999999999999999999999975

>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues

Probab=85.44  E-value=1.7  Score=38.79  Aligned_cols=43  Identities=16%  Similarity=0.504  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 028719          130 CVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMI  176 (205)
Q Consensus       130 ~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMi  176 (205)
                      +..-.+++|+++++++..    ||++.++||++.++++|.-.++++-
T Consensus         7 sq~~il~fa~Vla~~p~y----~~~~filYfiv~~~i~~~~~~Rs~r   49 (233)
T PF09973_consen    7 SQVSILLFAAVLAFFPQY----YFEVFILYFIVFFGIMIVMGIRSYR   49 (233)
T ss_pred             HHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            445567888999988543    6899999999999999999888876

However, these proteins are predicted to contain three or more transmembrane segments.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 29/115 (25%)

Query: 32  KYNVSRRYQHL-----LDKSVPH---VLH------RWVVCLAVVSIYAVRVYLVQGFYII 77
           KYNVSR   +L     L +  P    ++       +  V L V   Y V+  +    + +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 78  TYG-------LGIYLLNLLMGFLSPQIDPEY---SDGPTLPTRGSDEFRPFVRRL 122
                     +   L  LL      QIDP +   SD  +         +  +RRL
Sbjct: 188 NLKNCNSPETVLEMLQKLLY-----QIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00