Citrus Sinensis ID: 028745

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----

MEGKANGPSENQAGRSVSGPTNPMVTPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEECIRFIANFKLTEEEITFVRDSLPGSCEDGFFDYLRGINCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQVAHIIFNLLFELLIFVCS

cccccccccccccccccccccccccccHHcHHHHHHHHHHHHHcccccccEEEEEEcccccccccEEEEEcHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHcccccccEEEEEccccEEcccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccHHHHHHHHHHHHccc

ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccccEEEEHcHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHccccccEEEEEEccccEEcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcHHHHHHHHHHHHHHHHHHHHHcc

megkangpsenqagrsvsgptnpmvtpLLNDLYQFTMAYAYWKagkhderaVFDLYfrknpfggeytIFAGLEECIRFIANFKLTEEEITFvrdslpgscedgffdylrgincsdvevhaitegsvvfpkvpllrvegPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQVAHIIFNLLFELLIFVCS

megkangpsenqagrsvsgptnPMVTPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEECIRFIANFKLTEEEITFVRDSLPGSCEDGFFDYLRGINCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQVAHIIFNLLFELLIFVCS

************************VTPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEECIRFIANFKLTEEEITFVRDSLPGSCEDGFFDYLRGINCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQVAHIIFNLLFELLIFVC*

***********************MVTPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEECIRFIANFKLTEEEITFVRDSLPGSCEDGFFDYLRGINCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQVAHIIFNLLFELLIFVCS

******************GPTNPMVTPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEECIRFIANFKLTEEEITFVRDSLPGSCEDGFFDYLRGINCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQVAHIIFNLLFELLIFVCS

*********************NPMVTPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEECIRFIANFKLTEEEITFVRDSLPGSCEDGFFDYLRGINCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQVAHIIFNLLFELLIFVCS

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		204	2.2.26 [Sep-21-2011]
Q55G10		589	Nicotinate phosphoribosyl	yes	no	0.857	0.297	0.585	1e-57
Q95XX1		562	Nicotinate phosphoribosyl	yes	no	0.808	0.293	0.581	1e-54
Q6P3H4		546	Nicotinate phosphoribosyl	yes	no	0.784	0.293	0.574	1e-51
Q9VQX4		555	Nicotinate phosphoribosyl	yes	no	0.808	0.297	0.581	3e-51
A5PK51		538	Nicotinate phosphoribosyl	yes	no	0.784	0.297	0.537	5e-49
Q6XQN6		538	Nicotinate phosphoribosyl	yes	no	0.784	0.297	0.543	9e-49
Q6XQN1		538	Nicotinate phosphoribosyl	yes	no	0.799	0.302	0.539	3e-48
Q8CC86		538	Nicotinate phosphoribosyl	yes	no	0.799	0.302	0.539	3e-48
O32090		490	Nicotinate phosphoribosyl	yes	no	0.759	0.316	0.433	2e-33
O53770		463	Nicotinate phosphoribosyl	yes	no	0.769	0.339	0.358	5e-18

>sp\|Q55G10\|PNCB_DICDI Nicotinate phosphoribosyltransferase OS=Dictyostelium discoideum GN=naprt PE=2 SV=1	Back alignment and function desciption

 Score =  222 bits (565), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/176 (58%), Positives = 133/176 (75%), Gaps = 1/176 (0%)

Query: 11  NQAGRSVSGPTNPMVTPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFA 70
           +Q  +    P N  VTPLL DLYQ TMAY+ WK  +H+  AVFDLYFRK+PFGGE+T+FA
Sbjct: 46  DQESKDKIKPLNGFVTPLLTDLYQITMAYSLWKNNRHEIPAVFDLYFRKSPFGGEFTVFA 105

Query: 71  GLEECIRFIANFKLTEEEITFVRDSLPGSCEDGFFDYLRGINCSDVEVHAITEGSVVFPK 130
           GLEE IRF+++F  T+EE+ F+++ +P  CE  F DYL  ++ S V ++A+ EGSVVFP+
Sbjct: 106 GLEEVIRFVSDFHYTKEEVGFIKEMIP-DCEQEFLDYLSKLDSSSVTLYAMKEGSVVFPR 164

Query: 131 VPLLRVEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQ 186
           VPLLRVEGP+ + QL ET  + L+N+ASLV TNAARHR   GK K++LEFGLRRAQ
Sbjct: 165 VPLLRVEGPMILCQLFETTLLCLVNFASLVATNAARHRLAVGKEKVMLEFGLRRAQ 220

Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN).
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 1

>sp\|Q95XX1\|PNCB_CAEEL Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans GN=Y54G2A.17 PE=2 SV=3	Back alignment and function description

>sp\|Q6P3H4\|PNCB_DANRE Nicotinate phosphoribosyltransferase OS=Danio rerio GN=naprt1 PE=2 SV=2	Back alignment and function description

>sp\|Q9VQX4\|PNCB_DROME Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster GN=CG3714 PE=2 SV=2	Back alignment and function description

>sp\|A5PK51\|PNCB_BOVIN Nicotinate phosphoribosyltransferase OS=Bos taurus GN=NAPRT1 PE=2 SV=2	Back alignment and function description

>sp\|Q6XQN6\|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1 PE=1 SV=2	Back alignment and function description

>sp\|Q6XQN1\|PNCB_RAT Nicotinate phosphoribosyltransferase OS=Rattus norvegicus GN=Naprt1 PE=2 SV=1	Back alignment and function description

>sp\|Q8CC86\|PNCB_MOUSE Nicotinate phosphoribosyltransferase OS=Mus musculus GN=Naprt1 PE=2 SV=1	Back alignment and function description

>sp\|O32090\|PNCB_BACSU Nicotinate phosphoribosyltransferase OS=Bacillus subtilis (strain 168) GN=pncB PE=3 SV=1	Back alignment and function description

>sp\|O53770\|PNCB2_MYCTU Nicotinate phosphoribosyltransferase pncB2 OS=Mycobacterium tuberculosis GN=pncB2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		204
356511877		557	PREDICTED: nicotinate phosphoribosyltran	0.911	0.333	0.838	4e-88
224081698		559	predicted protein [Populus trichocarpa]	0.882	0.322	0.841	7e-88
4006879		458	hypothetical protein [Arabidopsis thalia	0.906	0.403	0.827	2e-87
186517003		559	nicotinate phosphoribosyltransferase 1 [	0.906	0.330	0.827	2e-87
297798164		535	predicted protein [Arabidopsis lyrata su	0.906	0.345	0.827	3e-87
225438748		561	PREDICTED: nicotinate phosphoribosyltran	0.911	0.331	0.818	3e-87
449463957		561	PREDICTED: nicotinate phosphoribosyltran	0.911	0.331	0.823	3e-87
388503342		192	unknown [Lotus japonicus]	0.897	0.953	0.836	8e-87
357482857		556	Nicotinate phosphoribosyltransferase-lik	0.857	0.314	0.845	2e-85
224094304		559	predicted protein [Populus trichocarpa]	0.862	0.314	0.835	6e-85

>gi\|356511877\|ref\|XP_003524648.1\| PREDICTED: nicotinate phosphoribosyltransferase-like [Glycine max]	Back alignment and taxonomy information

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 156/186 (83%), Positives = 168/186 (90%)

Query: 1   MEGKANGPSENQAGRSVSGPTNPMVTPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKN 60
           ME K NGPS+  +   + GPTNPMVTPLLNDLYQFTMAYAYWKAGKH ERAVFDLYFR+N
Sbjct: 1   METKENGPSKKVSNGGIDGPTNPMVTPLLNDLYQFTMAYAYWKAGKHQERAVFDLYFRRN 60

Query: 61  PFGGEYTIFAGLEECIRFIANFKLTEEEITFVRDSLPGSCEDGFFDYLRGINCSDVEVHA 120
           PFGGEYT+FAGLEECIRFIANF L EEEI FVR+ L  SCEDGFFDYLRG++CSDVEV+A
Sbjct: 61  PFGGEYTVFAGLEECIRFIANFTLAEEEIDFVRECLSSSCEDGFFDYLRGLDCSDVEVYA 120

Query: 121 ITEGSVVFPKVPLLRVEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSKMLLEF 180
           I EG+VVFPKVPL+RVEGPVAVVQLLETPFVNLINYASLV+TNAARHR VAGKSK LLEF
Sbjct: 121 IPEGTVVFPKVPLMRVEGPVAVVQLLETPFVNLINYASLVSTNAARHRNVAGKSKTLLEF 180

Query: 181 GLRRAQ 186
           GLRRAQ
Sbjct: 181 GLRRAQ 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224081698\|ref\|XP_002306477.1\| predicted protein [Populus trichocarpa] gi\|222855926\|gb\|EEE93473.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|4006879\|emb\|CAB16797.1\| hypothetical protein [Arabidopsis thaliana] gi\|7270643\|emb\|CAB80360.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|186517003\|ref\|NP_195412.3\| nicotinate phosphoribosyltransferase 1 [Arabidopsis thaliana] gi\|20260210\|gb\|AAM13003.1\| unknown protein [Arabidopsis thaliana] gi\|332661321\|gb\|AEE86721.1\| nicotinate phosphoribosyltransferase 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297798164\|ref\|XP_002866966.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297312802\|gb\|EFH43225.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|225438748\|ref\|XP_002282786.1\| PREDICTED: nicotinate phosphoribosyltransferase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449463957\|ref\|XP_004149696.1\| PREDICTED: nicotinate phosphoribosyltransferase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|388503342\|gb\|AFK39737.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|357482857\|ref\|XP_003611715.1\| Nicotinate phosphoribosyltransferase-like protein [Medicago truncatula] gi\|355513050\|gb\|AES94673.1\| Nicotinate phosphoribosyltransferase-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224094304\|ref\|XP_002310133.1\| predicted protein [Populus trichocarpa] gi\|222853036\|gb\|EEE90583.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		204
TAIR\|locus:2115095		559	NAPRT1 "nicotinate phosphoribo	0.906	0.330	0.827	1.5e-81
TAIR\|locus:2046872		557	NAPRT2 "nicotinate phosphoribo	0.897	0.328	0.790	3.4e-77
DICTYBASE\|DDB_G0268472		589	naprt "nicotinate phosphoribos	0.857	0.297	0.585	3.8e-53
FB\|FBgn0031589		555	CG3714 [Drosophila melanogaste	0.808	0.297	0.581	6.5e-51
WB\|WBGene00021882		562	Y54G2A.17 [Caenorhabditis eleg	0.843	0.306	0.566	8.3e-51
UNIPROTKB\|Q95XX1		562	Y54G2A.17 "Nicotinate phosphor	0.843	0.306	0.566	8.3e-51
ZFIN\|ZDB-GENE-040426-1897		548	naprt1 "nicotinate phosphoribo	0.794	0.295	0.586	4.6e-50
UNIPROTKB\|A5PK51		538	NAPRT1 "Nicotinate phosphoribo	0.784	0.297	0.537	1.2e-44
UNIPROTKB\|F1N3B0		538	NAPRT1 "Nicotinate phosphoribo	0.784	0.297	0.537	1.2e-44
UNIPROTKB\|C9J8U2		490	NAPRT1 "Nicotinate phosphoribo	0.784	0.326	0.543	1.9e-44

TAIR\|locus:2115095 NAPRT1 "nicotinate phosphoribosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 154/186 (82%), Positives = 170/186 (91%)

Query:     1 MEGKANGPSENQAGRSVSGPTNPMVTPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKN 60
             ME K NG    Q+GR ++GPTNPMVTPLLNDLYQFTMAYAYWKAGK  ER+VFDLYFRKN
Sbjct:     1 MEKKENGLDGKQSGRVINGPTNPMVTPLLNDLYQFTMAYAYWKAGKQSERSVFDLYFRKN 60

Query:    61 PFGGEYTIFAGLEECIRFIANFKLTEEEITFVRDSLPGSCEDGFFDYLRGINCSDVEVHA 120
             PFGGEYTIFAGLEECI+F+ANF LT+EEI FVRDSLPG CE+ F DYLRG++CSD+EV+A
Sbjct:    61 PFGGEYTIFAGLEECIKFLANFNLTDEEIDFVRDSLPG-CEEAFCDYLRGLDCSDIEVYA 119

Query:   121 ITEGSVVFPKVPLLRVEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSKMLLEF 180
             I+EGSVVFPKVPLLR+EGPVAVVQLLETPF+NLINYASLV TNAARHRFVAGKSK+LLEF
Sbjct:   120 ISEGSVVFPKVPLLRIEGPVAVVQLLETPFLNLINYASLVATNAARHRFVAGKSKLLLEF 179

Query:   181 GLRRAQ 186
             G RRAQ
Sbjct:   180 GARRAQ 185

GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0009435 "NAD biosynthetic process" evidence=IEA

GO:0019358 "nicotinate nucleotide salvage" evidence=IEA;ISS

GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA

TAIR\|locus:2046872 NAPRT2 "nicotinate phosphoribosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0268472 naprt "nicotinate phosphoribosyltransferase-like protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0031589 CG3714 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00021882 Y54G2A.17 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|Q95XX1 Y54G2A.17 "Nicotinate phosphoribosyltransferase" [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1897 naprt1 "nicotinate phosphoribosyltransferase domain containing 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|A5PK51 NAPRT1 "Nicotinate phosphoribosyltransferase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N3B0 NAPRT1 "Nicotinate phosphoribosyltransferase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J8U2 NAPRT1 "Nicotinate phosphoribosyltransferase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.2	LOW CONFIDENCE prediction!
4th Layer	2.4.2.11	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		204
PLN02885		545	PLN02885, PLN02885, nicotinate phosphoribosyltrans	1e-126
cd01570		327	cd01570, NAPRTase_A, Nicotinate phosphoribosyltran	4e-83
PRK09243		464	PRK09243, PRK09243, nicotinate phosphoribosyltrans	9e-62
TIGR01513		443	TIGR01513, NAPRTase_put, putative nicotinate phosp	2e-61
cd01567		343	cd01567, NAPRTase_PncB, Nicotinate phosphoribosylt	3e-54
COG1488		405	COG1488, PncB, Nicotinic acid phosphoribosyltransf	3e-43
PRK12484		443	PRK12484, PRK12484, nicotinate phosphoribosyltrans	2e-36
cd00516		281	cd00516, PRTase_typeII, Phosphoribosyltransferase	1e-29
cd01571		302	cd01571, NAPRTase_B, Nicotinate phosphoribosyltran	6e-12
PRK08662		343	PRK08662, PRK08662, nicotinate phosphoribosyltrans	5e-11
cd01401		377	cd01401, PncB_like, Nicotinate phosphoribosyltrans	2e-05
PRK05321		400	PRK05321, PRK05321, nicotinate phosphoribosyltrans	6e-05
TIGR01514		394	TIGR01514, NAPRTase, nicotinate phosphoribosyltran	9e-05

>gnl\|CDD\|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase	Back alignment and domain information

 Score =  365 bits (940), Expect = e-126
 Identities = 134/171 (78%), Positives = 154/171 (90%)

Query: 16  SVSGPTNPMVTPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEEC 75
            +  PTNPMVTPLL DLYQFTMAYAYWKAGKH +RAVFDL+FRKNPFGGEYT+FAGLEEC
Sbjct: 1   VIPRPTNPMVTPLLTDLYQFTMAYAYWKAGKHLDRAVFDLFFRKNPFGGEYTVFAGLEEC 60

Query: 76  IRFIANFKLTEEEITFVRDSLPGSCEDGFFDYLRGINCSDVEVHAITEGSVVFPKVPLLR 135
           +RFIANFK T+++I F+R  +P  CED FFDYLRG++CSDVEV+AI EGSVVFP+VPL+R
Sbjct: 61  LRFIANFKFTDDDIDFLRSVMPSGCEDAFFDYLRGLDCSDVEVYAIPEGSVVFPRVPLMR 120

Query: 136 VEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQ 186
           +EGP+AVVQLLET F+ L+NYASLV TNAARHR VAGKSK+LLEFGLRRAQ
Sbjct: 121 IEGPLAVVQLLETTFLTLVNYASLVATNAARHRLVAGKSKVLLEFGLRRAQ 171

Length = 545

>gnl\|CDD\|238804 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A	Back alignment and domain information

>gnl\|CDD\|236426 PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	Back alignment and domain information

>gnl\|CDD\|233446 TIGR01513, NAPRTase_put, putative nicotinate phosphoribosyltransferase	Back alignment and domain information

>gnl\|CDD\|238801 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase (NAPRTase) family	Back alignment and domain information

>gnl\|CDD\|224405 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|237112 PRK12484, PRK12484, nicotinate phosphoribosyltransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD	Back alignment and domain information

>gnl\|CDD\|238805 cd01571, NAPRTase_B, Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B	Back alignment and domain information

>gnl\|CDD\|236328 PRK08662, PRK08662, nicotinate phosphoribosyltransferase; Reviewed	Back alignment and domain information

>gnl\|CDD\|238695 cd01401, PncB_like, Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB	Back alignment and domain information

>gnl\|CDD\|235406 PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|130578 TIGR01514, NAPRTase, nicotinate phosphoribosyltransferase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		204
PLN02885		545	nicotinate phosphoribosyltransferase	100.0
PRK12484		443	nicotinate phosphoribosyltransferase; Provisional	100.0
TIGR01513		443	NAPRTase_put putative nicotinate phosphoribosyltra	100.0
KOG2511		420	consensus Nicotinic acid phosphoribosyltransferase	100.0
PRK09243		464	nicotinate phosphoribosyltransferase; Validated	100.0
cd01570		327	NAPRTase_A Nicotinate phosphoribosyltransferase (N	100.0
cd01401		377	PncB_like Nicotinate phosphoribosyltransferase (NA	100.0
PRK05321		400	nicotinate phosphoribosyltransferase; Provisional	100.0
TIGR01514		394	NAPRTase nicotinate phosphoribosyltransferase. Thi	100.0
COG1488		405	PncB Nicotinic acid phosphoribosyltransferase [Coe	100.0
PHA02594		470	nadV nicotinamide phosphoribosyl transferase; Prov	100.0
PRK09198		463	putative nicotinate phosphoribosyltransferase; Pro	100.0
cd01567		343	NAPRTase_PncB Nicotinate phosphoribosyltransferase	100.0
cd01569		407	PBEF_like pre-B-cell colony-enhancing factor (PBEF	100.0
PRK07188		352	nicotinate phosphoribosyltransferase; Provisional	99.86
PRK08662		343	nicotinate phosphoribosyltransferase; Reviewed	99.86
cd00516		281	PRTase_typeII Phosphoribosyltransferase (PRTase) t	99.86
cd01571		302	NAPRTase_B Nicotinate phosphoribosyltransferase (N	99.74
cd01568		269	QPRTase_NadC Quinolinate phosphoribosyl transferas	99.14
cd01573		272	modD_like ModD; Quinolinate phosphoribosyl transfe	98.94
cd01572		268	QPRTase Quinolinate phosphoribosyl transferase (QA	98.86
TIGR00078		265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	98.85
PRK08385		278	nicotinate-nucleotide pyrophosphorylase; Provision	98.49
PRK05848		273	nicotinate-nucleotide pyrophosphorylase; Provision	98.47
PRK07896		289	nicotinate-nucleotide pyrophosphorylase; Provision	98.4
PRK05742		277	nicotinate-nucleotide pyrophosphorylase; Provision	98.33
PRK09016		296	quinolinate phosphoribosyltransferase; Validated	97.99
PRK07428		288	nicotinate-nucleotide pyrophosphorylase; Provision	97.94
PRK08072		277	nicotinate-nucleotide pyrophosphorylase; Provision	97.87
PLN02716		308	nicotinate-nucleotide diphosphorylase (carboxylati	97.83
PRK06106		281	nicotinate-nucleotide pyrophosphorylase; Provision	97.76
PRK06559		290	nicotinate-nucleotide pyrophosphorylase; Provision	97.64
PF02749		88	QRPTase_N: Quinolinate phosphoribosyl transferase,	97.52
TIGR01334		277	modD putative molybdenum utilization protein ModD.	97.49
PRK06096		284	molybdenum transport protein ModD; Provisional	97.32
PRK06543		281	nicotinate-nucleotide pyrophosphorylase; Provision	97.27
PRK06978		294	nicotinate-nucleotide pyrophosphorylase; Provision	97.06
COG0157		280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	96.49
KOG3008		300	consensus Quinolinate phosphoribosyl transferase [	89.47

>PLN02885 nicotinate phosphoribosyltransferase	Back alignment and domain information

Probab=100.00  E-value=2.9e-50  Score=377.47  Aligned_cols=177  Identities=76%  Similarity=1.268  Sum_probs=168.2

Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHHHhCCCCceEEEEEEeecCCCCCcchHHHHHHHHHHHHhcCCCCHHHHHHHHhhCCC
Q 028745           19 GPTNPMVTPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEECIRFIANFKLTEEEITFVRDSLPG   98 (204)
Q Consensus        19 ~~~~~i~~~LlTD~Ykltm~~a~~~~~~~~~~v~f~ff~R~~p~~~~~~v~~gl~~~i~~L~~l~ft~eei~yL~~~~~~   98 (204)
                      .|+++++.+|+||+||+||+|+||++++++.+++|+||+|+.|++++|+|++||+++|++|++++||+|||+||++.++-
T Consensus         4 ~~~~~~i~~LlTDlYklTM~~ay~~~~~~~~~avf~~f~R~~p~~~~~~v~aGL~~~l~~L~~l~Ft~edi~yL~~~~~~   83 (545)
T PLN02885          4 RPTNPMVTPLLTDLYQFTMAYAYWKAGKHLDRAVFDLFFRKNPFGGEYTVFAGLEECLRFIANFKFTDDDIDFLRSVMPS   83 (545)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCCcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhccc
Confidence            37888999999999999999999999998889999999999999999999999999999999999999999999988632


Q ss_pred             CCChhHHHHHhcCCCCceEEEEeeCCeeecCCccEEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeee
Q 028745           99 SCEDGFFDYLRGINCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSKMLL  178 (204)
Q Consensus        99 ~~~~~f~~~L~~~~~~~v~I~a~~EG~lv~~~eP~i~I~Gp~~~~~llEt~lL~iI~~~~~vaT~a~r~~~aa~~~~~l~  178 (204)
                      +|+++|++||++|++++|+|+|+|||++|||+||+|+|+|||+++++|||+||+|||+++++||++++++.+++++++++
T Consensus        84 ~f~~~Fl~yL~~~~~~~V~I~A~~EG~lvf~~eP~i~IeGp~~~~~LlEt~LL~iI~~~s~iAT~aar~~~aa~~~~~v~  163 (545)
T PLN02885         84 GCEDAFFDYLRGLDCSDVEVYAIPEGSVVFPRVPLMRIEGPLAVVQLLETTFLTLVNYASLVATNAARHRLVAGKSKVLL  163 (545)
T ss_pred             cCCHHHHHHHHhCCCCCceEEecCCCcEecCCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999997568899


Q ss_pred             eccCCCCCChhhHHHhh
Q 028745          179 EFGLRRAQVAHIIFNLL  195 (204)
Q Consensus       179 eFG~RR~~g~~a~~~~~  195 (204)
                      |||+||+||+|||++++
T Consensus       164 eFG~RRaqg~d~~~~~~  180 (545)
T PLN02885        164 EFGLRRAQGPDGGISAS  180 (545)
T ss_pred             ECCCccCcCccHHHHHH
Confidence            99999999999988665

>PRK12484 nicotinate phosphoribosyltransferase; Provisional	Back alignment and domain information

>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase	Back alignment and domain information

>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]	Back alignment and domain information

>PRK09243 nicotinate phosphoribosyltransferase; Validated	Back alignment and domain information

>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A	Back alignment and domain information

>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB	Back alignment and domain information

>PRK05321 nicotinate phosphoribosyltransferase; Provisional	Back alignment and domain information

>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase	Back alignment and domain information

>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]	Back alignment and domain information

>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional	Back alignment and domain information

>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional	Back alignment and domain information

>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family	Back alignment and domain information

>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like	Back alignment and domain information

>PRK07188 nicotinate phosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK08662 nicotinate phosphoribosyltransferase; Reviewed	Back alignment and domain information

>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD	Back alignment and domain information

>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B	Back alignment and domain information

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	Back alignment and domain information

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport	Back alignment and domain information

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	Back alignment and domain information

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase	Back alignment and domain information

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK09016 quinolinate phosphoribosyltransferase; Validated	Back alignment and domain information

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)	Back alignment and domain information

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2	Back alignment and domain information

>TIGR01334 modD putative molybdenum utilization protein ModD	Back alignment and domain information

>PRK06096 molybdenum transport protein ModD; Provisional	Back alignment and domain information

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]	Back alignment and domain information

>KOG3008 consensus Quinolinate phosphoribosyl transferase [Nucleotide transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		204
2f7f_A		494	Crystal Structure Of Enterococcus Faecalis Putative		4e-29
1ytd_A		398	Crystal Structure Of A Nicotinate Phosphoribosyltra		9e-08
2i14_A		395	Crystal Structure Of Nicotinate-Nucleotide Pyrophos		1e-04

>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative Nicotinate Phosphoribosyltransferase, New York Structural Genomics Consortium Length = 494

Back alignment and structure

Iteration: 1

Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 68/161 (42%), Positives = 96/161 (59%), Gaps = 8/161 (4%) Query: 28 LLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEECIRFIANFKLTEE 87 L D+YQ M YW+ G+ D AVF+ YFR+ PF Y IFAGLE + ++ N TE Sbjct: 12 LHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTES 71 Query: 88 EITFVRDSLPGSCEDGFFDYLRG--INCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQL 145 +I ++R+ + ED F YL C+ V + EG +VF PL+++EGP+A QL Sbjct: 72 DIAYLRE-VEEYPED-FLTYLANFEFKCT---VRSALEGDLVFNNEPLIQIEGPLAQCQL 126 Query: 146 LETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQ 186 +ET +N++N+ +L+ T AAR + V G LLEFG RRAQ Sbjct: 127 VETALLNMVNFQTLIATKAARIKSVIGDDP-LLEFGTRRAQ 166

PyMOL of 2f7f

>pdb|1YTD|A Chain A, Crystal Structure Of A Nicotinate Phosphoribosyltransferase From Thermoplasma Acidophilum, Native Structure Length = 398

Back alignment and structure

>pdb|2I14|A Chain A, Crystal Structure Of Nicotinate-Nucleotide Pyrophosphorylase From Pyrococcus Furiosus Length = 395

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		204
2f7f_A		494	Nicotinate phosphoribosyltransferase, putative; st	2e-75
2i14_A		395	Nicotinate-nucleotide pyrophosphorylase; ligand bi	1e-50
1vlp_A		441	Naprtase, nicotinate phosphoribosyltransferase; st	9e-50
1yir_A		408	Naprtase 2, nicotinate phosphoribosyltransferase 2	2e-38
3os4_A		407	Naprtase, nicotinate phosphoribosyltransferase; st	3e-38
2i1o_A		398	Nicotinate phosphoribosyltransferase; ZIN ION, zin	6e-37
2im5_A		394	Nicotinate phosphoribosyltransferase; structural g	1e-36
1ybe_A		449	Naprtase, nicotinate phosphoribosyltransferase; st	1e-33
3dhf_A		484	Nicotinamide phosphoribosyltransferase; NMPRTASE,	2e-32

>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 Length = 494	Back alignment and structure

 Score =  234 bits (598), Expect = 2e-75
 Identities = 65/161 (40%), Positives = 92/161 (57%), Gaps = 4/161 (2%)

Query: 26  TPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEECIRFIANFKLT 85
             L  D+YQ  M   YW+ G+ D  AVF+ YFR+ PF   Y IFAGLE  + ++ N   T
Sbjct: 10  LTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFT 69

Query: 86  EEEITFVRDSLPGSCEDGFFDYLRGINCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQL 145
           E +I ++R+       + F  YL         V +  EG +VF   PL+++EGP+A  QL
Sbjct: 70  ESDIAYLREV--EEYPEDFLTYLANFEFK-CTVRSALEGDLVFNNEPLIQIEGPLAQCQL 126

Query: 146 LETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQ 186
           +ET  +N++N+ +L+ T AAR + V G    LLEFG RRAQ
Sbjct: 127 VETALLNMVNFQTLIATKAARIKSVIGD-DPLLEFGTRRAQ 166

PyMOL of 2f7f

>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Length = 395	Back alignment and structure

>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2 Length = 441	Back alignment and structure

>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Length = 408	Back alignment and structure

>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Length = 407	Back alignment and structure

>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Length = 398	Back alignment and structure

>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} Length = 394	Back alignment and structure

>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Length = 449	Back alignment and structure

>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Length = 484	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		204
d2f7fa2		137	d.41.2.1 (A:4-140) Putative nicotinate phosphoribo	4e-50
d1vlpa1		149	d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransf	3e-45
d1yira2		141	d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransf	6e-37
d1ybea2		160	d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransf	8e-36
d1ytda2		119	d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransf	4e-28
d2i14a2		110	d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosp	6e-27
d2i14a1		279	c.1.17.1 (A:111-389) Nicotinate-nucleotide pyropho	4e-04
d2f7fa1		345	c.1.17.1 (A:141-485) Putative nicotinate phosphori	9e-04
d1ytda1		270	c.1.17.1 (A:120-389) Nicotinate phosphoribosyltran	0.003

>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Length = 137	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

 Score =  156 bits (397), Expect = 4e-50
 Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 3/134 (2%)

Query: 26  TPLLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEECIRFIANFKLT 85
             L  D+YQ  M   YW+ G+ D  AVF+ YFR+ PF   Y IFAGLE  + ++ N   T
Sbjct: 7   LTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFT 66

Query: 86  EEEITFVRDSLPGSCEDGFFDYLRGINCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQL 145
           E +I ++R+       + F  YL         V +  EG +VF   PL+++EGP+A  QL
Sbjct: 67  ESDIAYLREVEE--YPEDFLTYLANFEF-KCTVRSALEGDLVFNNEPLIQIEGPLAQCQL 123

Query: 146 LETPFVNLINYASL 159
           +ET  +N++N+ +L
Sbjct: 124 VETALLNMVNFQTL 137

PyMOL of d2f7fa2

>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 149	Back information, alignment and structure

>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 141	Back information, alignment and structure

>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Length = 160	Back information, alignment and structure

>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Length = 119	Back information, alignment and structure

>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Length = 110	Back information, alignment and structure

>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Length = 279	Back information, alignment and structure

>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Length = 345	Back information, alignment and structure

>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Length = 270	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		204
d1ybea2		160	Nicotinate phosphoribosyltransferase, N-terminal d	100.0
d1vlpa1		149	Nicotinate phosphoribosyltransferase, N-terminal d	100.0
d2f7fa2		137	Putative nicotinate phosphoribosyltransferase EF26	100.0
d1yira2		141	Nicotinate phosphoribosyltransferase, N-terminal d	100.0
d2i14a2		110	Nicotinate-nucleotide pyrophosphorylase PF1904 {Py	99.92
d1ytda2		119	Nicotinate phosphoribosyltransferase Ta1145 {Therm	99.92
d1qpoa2		115	Quinolinic acid phosphoribosyltransferase (Nicotin	94.6
d1qapa2		122	Quinolinic acid phosphoribosyltransferase (Nicotin	88.23
d1o4ua2		103	Quinolinic acid phosphoribosyltransferase (Nicotin	86.94

>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like
domain: Nicotinate phosphoribosyltransferase, N-terminal domain
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=1.3e-44  Score=270.95  Aligned_cols=150  Identities=19%  Similarity=0.214  Sum_probs=137.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHCC
Q ss_conf             8999743248899899998741234-13989999999998299995499999951499-999605898999999999649
Q 028745            5 ANGPSENQAGRSVSGPTNPMVTPLL-NDLYQFTMAYAYWKAGKHDERAVFDLYFRKNP-FGGEYTIFAGLEECIRFIANF   82 (204)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~i~~~Ll-TD~Yk~tm~~~~~~~~~~~~~v~y~f~~R~~~-~~~~~~v~~gl~e~l~~L~~l   82 (204)
                      |.++++++++.||++.++||+.+|+ ||+||+||+|+||+++| +++|+|+|++|+.| +.+++++++||+++|++|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~piI~SlLdTDlYklTM~qa~~~~~~-~~~a~f~f~~R~~~~~~~~~~~~~gL~~~i~~l~~l   79 (160)
T d1ybea2           1 MTKTDIATRVHNHTWKLDPIVRSLIDTDFYKLLMLQMIWKLYP-EVDATFSLINRTKTVRLAEEIDEMELREQLDHARTL   79 (160)
T ss_dssp             CHHHHHHTC-----CCCCCSCCCTTCSBHHHHHHHHHHHHHCT-TCBEEEEEEESCCSSCSTTTSCHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             9720366787657678866551254318899999999998689-975999999789986423689999999999999867


Q ss_pred             CCCHHHHHHHHHHCC----CCCCHHHHHHHHCCCCCCEEEEEEECCEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf             999888999986499----9999128888724899841899830990542993289999355036888789998987899
Q 028745           83 KLTEEEITFVRDSLP----GSCEDGFFDYLRGINCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQLLETPFVNLINYAS  158 (204)
Q Consensus        83 ~ft~eei~yL~~~~~----~~~~~~f~~~L~~~~~~~v~I~a~~EG~lv~~~eP~i~I~Gp~~~~~llEt~lL~iIse~~  158 (204)
                      +||+||++||++.|+    .+|+++|++||+++++.+ ++.+++||++      +|+|+|||.+||+||||+|+||||.+
T Consensus        80 rFt~eei~yL~~~~~~~~~~~f~~~fl~~L~~f~f~~-~~~~~~eG~l------~i~V~GP~~~~~L~EtplLaIInE~~  152 (160)
T d1ybea2          80 RLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQLPE-YELFKRDGQY------ELNFHGRWMDTTLWEIPALSIINELR  152 (160)
T ss_dssp             CCCHHHHHHHHHSCSSSCSCCSCHHHHHHHHTCCCCC-CEEEECSSCE------EEEECSBHHHHGGGHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCC-EEEEECCCCE------EEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999846885556767989999971478996-0899659938------99999889999999999999999999


Q ss_pred             HHHH
Q ss_conf             9987
Q 028745          159 LVTT  162 (204)
Q Consensus       159 ~vaT  162 (204)
                      +...
T Consensus       153 ~r~~  156 (160)
T d1ybea2         153 SRSA  156 (160)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9988

PyMOL of d1ybea2

>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure