Citrus Sinensis ID: 028747

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MGLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLDTEL
Secondary Structure (PSIPRED)
cccEEEEEEEccccccccccccccEEEEEEcccccccccccccccccccccEEEEccccccccccccccEEEccccccccccHHHHHHHHccccccccccccccccHHHcccccHHHHHHHHcccEEEEcccccEEEEEEEEEEEccccEEEEEEEEccccccccEEEEcccccccccEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccccccccccEEcccccccccccccEEEEEcccccEEEEEEEEcccccccccccccccccccccEEEcccccccccHHHEEEEcccccccccEEEEccccEEEEHHHHHccEEEEccccHcccEEEEEEEEccccEEEEEEEcHHHccccHHEEEHHcccEcccEEEEcccHHHHHHHHEEccccccccc
Coil and Loop (DISEMBL)
MGLEVRVSRMSEcissiplsnsvpvtkirtlsgskwrpkngsvrngnlqyamctfkppsknqelfdelgfkdkfsvnsaEENSREIAEVKEEkreeekdgsdgssekvkLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVrpnllsgepeRLLLEDICQVGDVVLIedesvmendfkMVRLDTLDTEL
Flexible Loop (DISEMBL)
MGLEVRVSRMSEcissiplsnsvpvtkirtlsgskwrpkngsvrnGNLQYAMCTFKPPSKNQELFDELGFKDkfsvnsaeensreiaevkeekreeekdgsdgssekvklrrgrqvmrrsNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPnllsgeperLLLEDICQVGDVVLIedesvmendfkmvrldtldtel
Low Complexity Region (SEG)
MGLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSVNSAEENSReiaevkeekreeekdgsdgssekVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLDTEL
Disordered region (IsUnstruct)
*********************************************GNLQYAMCTF*****************************************************************NLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVR********
Disordered Region (DISOPRED)
****VRVSRMSECISSIPLSNSVPVTKIRTL*********************CTFKPPSKNQELFDELG***************************************************NLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTL****
Disordered Region (DISEMBL)
**********SECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSV**************************************QVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLDTEL
Disordered Region (DISPRO)
*GLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSxxxxxxxxxxxxxxxxxxxxxxxxGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLDTEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
225439715	377	PREDICTED: uncharacterized protein LOC10	0.901	0.488	0.434	3e-37
359481313	332	PREDICTED: uncharacterized protein LOC10	0.911	0.560	0.425	3e-37
147840953	377	hypothetical protein VITISV_011642 [Viti	0.901	0.488	0.434	5e-37
356568220	382	PREDICTED: uncharacterized protein LOC10	0.514	0.274	0.681	3e-34
449502678	473	PREDICTED: uncharacterized LOC101206450	0.612	0.264	0.583	1e-33
449449956	473	PREDICTED: uncharacterized protein LOC10	0.612	0.264	0.583	1e-33
224091128	347	predicted protein [Populus trichocarpa]	0.568	0.334	0.644	2e-33
118487679	257	unknown [Populus trichocarpa]	0.568	0.451	0.644	2e-33
255575602	149	hypothetical protein RCOM_1058350 [Ricin	0.446	0.610	0.780	9e-33
115452855	229	Os03g0334100 [Oryza sativa Japonica Grou	0.441	0.393	0.7	3e-28

>gi|225439715|ref|XP_002268101.1| PREDICTED: uncharacterized protein LOC100261869 isoform 1 [Vitis vinifera] gi|297735530|emb|CBI18024.3| unnamed protein product [Vitis vinifera]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/244 (43%), Positives = 140/244 (57%), Gaps = 60/244 (24%)

Query: 10  MSECISSIPLSNSVPVTKIRTLSGSK--WRPKNGS------------VRNGN-------- 47
           M +C  S  L NS    +IR L  +   W P+N +             RNG         
Sbjct: 1   MCDCAPSTLLLNST--VRIRNLGFTTRDWNPRNHAKLSTFCNSHLIFHRNGGSRLISAEI 58

Query: 48  --LQYAMCTFKPPSKNQELFDELGFKDKF---------SVNSAEENSREIAEVKE-EKRE 95
             L    C    P++      ELGFKD+           V+S+  ++ +  E++E E R 
Sbjct: 59  DALNSTTCVRAIPNRG-----ELGFKDEGKRDFGFETKGVDSSTSSAFDFLELEEQEGRT 113

Query: 96  EEK-------------------DGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSL 136
            EK                   +G++   E++ LR GRQVMRRSN+LAKQVISI+SA+SL
Sbjct: 114 GEKSAGNPEDEDLVRVGGGSELEGAEKVDERLGLRSGRQVMRRSNMLAKQVISIRSALSL 173

Query: 137 GFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVR 196
           GFVSQLWVDTTSW+VLV+EVRPNLLSGE ER LLED+ +VGDVVL++DESVM+N++KM+ 
Sbjct: 174 GFVSQLWVDTTSWMVLVIEVRPNLLSGELERFLLEDVSRVGDVVLVQDESVMDNEYKMLG 233

Query: 197 LDTL 200
           L+TL
Sbjct: 234 LETL 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481313|ref|XP_003632606.1| PREDICTED: uncharacterized protein LOC100261869 isoform 2 [Vitis vinifera]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/242 (42%), Positives = 137/242 (56%), Gaps = 56/242 (23%)

Query: 10  MSECISSIPLSNSVPVTKIRTLSGSKWRPKNGS------------VRNGN---------- 47
           M +C  S  L NS    +    +   W P+N +             RNG           
Sbjct: 1   MCDCAPSTLLLNSTVRIRNLGFTTRDWNPRNHAKLSTFCNSHLIFHRNGGSRLISAEIDA 60

Query: 48  LQYAMCTFKPPSKNQELFDELGFKDKF---------SVNSAEENSREIAEVKE-EKREEE 97
           L    C    P++      ELGFKD+           V+S+  ++ +  E++E E R  E
Sbjct: 61  LNSTTCVRAIPNRG-----ELGFKDEGKRDFGFETKGVDSSTSSAFDFLELEEQEGRTGE 115

Query: 98  K-------------------DGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGF 138
           K                   +G++   E++ LR GRQVMRRSN+LAKQVISI+SA+SLGF
Sbjct: 116 KSAGNPEDEDLVRVGGGSELEGAEKVDERLGLRSGRQVMRRSNMLAKQVISIRSALSLGF 175

Query: 139 VSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLD 198
           VSQLWVDTTSW+VLV+EVRPNLLSGE ER LLED+ +VGDVVL++DESVM+N++KM+ L+
Sbjct: 176 VSQLWVDTTSWMVLVIEVRPNLLSGELERFLLEDVSRVGDVVLVQDESVMDNEYKMLGLE 235

Query: 199 TL 200
           TL
Sbjct: 236 TL 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840953|emb|CAN71020.1| hypothetical protein VITISV_011642 [Vitis vinifera]

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/244 (43%), Positives = 140/244 (57%), Gaps = 60/244 (24%)

Query: 10  MSECISSIPLSNSVPVTKIRTLSGSK--WRPKNGS------------VRNGN-------- 47
           M +C  S  L NS    +IR L  +   W P+N +             RNG         
Sbjct: 1   MCDCAPSXLLLNST--VRIRNLGFTTRDWNPRNHAKPSTFCNSHLIFHRNGGSRLISAEI 58

Query: 48  --LQYAMCTFKPPSKNQELFDELGFKDKF---------SVNSAEENSREIAEVKE-EKRE 95
             L    C    P++      ELGFKD+           V+S+  ++ +  E++E E R 
Sbjct: 59  DALNSTTCVRAIPNRG-----ELGFKDEGKRDFGFETKGVDSSXSSAFDFLELEEQEGRT 113

Query: 96  EEK-------------------DGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSL 136
            EK                   +G++   E++ LR GRQVMRRSN+LAKQVISI+SA+SL
Sbjct: 114 GEKSAGNPEDEDLVRVGGGSELEGAEKVDERLGLRSGRQVMRRSNMLAKQVISIRSALSL 173

Query: 137 GFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVR 196
           GFVSQLWVDTTSW+VLV+EVRPNLLSGE ER LLED+ +VGDVVL++DESVM+N++KM+ 
Sbjct: 174 GFVSQLWVDTTSWMVLVIEVRPNLLSGELERFLLEDVSRVGDVVLVQDESVMDNEYKMLG 233

Query: 197 LDTL 200
           L+TL
Sbjct: 234 LETL 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568220|ref|XP_003552311.1| PREDICTED: uncharacterized protein LOC100806448 [Glycine max]

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 94/110 (85%), Gaps = 5/110 (4%)

Query: 91  EEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWV 150
           +E+ E EK G      K+++RRG++V+RRSNLLAKQVISI SA+SLGFVSQLWVDT+SW+
Sbjct: 140 DEEGENEKFGG-----KLRVRRGKEVIRRSNLLAKQVISIHSALSLGFVSQLWVDTSSWM 194

Query: 151 VLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTL 200
           VL VEVRPNLLSG+ E+ LL+DI QVGDVVL++DESV +N+FKMV L+TL
Sbjct: 195 VLFVEVRPNLLSGDSEKFLLDDISQVGDVVLVQDESVTDNEFKMVGLETL 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502678|ref|XP_004161711.1| PREDICTED: uncharacterized LOC101206450 [Cucumis sativus]

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 98/132 (74%), Gaps = 7/132 (5%)

Query: 69  GFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVI 128
           G K + +   + E  R +  +++E  E E       + KV LR+ RQVMRRSN+LAKQVI
Sbjct: 210 GKKKRLNSERSSEGERNLVPIEDEDAEIE-------NGKVALRKRRQVMRRSNMLAKQVI 262

Query: 129 SIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVM 188
           SIQSA+SLGFVSQLWVDT++W+V  +EV+PNLLSGE E  LLEDI QVGDVVL+ DE+VM
Sbjct: 263 SIQSALSLGFVSQLWVDTSAWMVKFLEVKPNLLSGESEWFLLEDISQVGDVVLVHDETVM 322

Query: 189 ENDFKMVRLDTL 200
           +NDFKM  ++TL
Sbjct: 323 DNDFKMAGMETL 334

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449956|ref|XP_004142730.1| PREDICTED: uncharacterized protein LOC101206450 [Cucumis sativus]

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 98/132 (74%), Gaps = 7/132 (5%)

Query: 69  GFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVI 128
           G K + +   + E  R +  +++E  E E       + KV LR+ RQVMRRSN+LAKQVI
Sbjct: 210 GKKKRLNSERSSEGERNLVPIEDEDAEIE-------NGKVALRKRRQVMRRSNMLAKQVI 262

Query: 129 SIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVM 188
           SIQSA+SLGFVSQLWVDT++W+V  +EV+PNLLSGE E  LLEDI QVGDVVL+ DE+VM
Sbjct: 263 SIQSALSLGFVSQLWVDTSAWMVKFLEVKPNLLSGESEWFLLEDISQVGDVVLVHDETVM 322

Query: 189 ENDFKMVRLDTL 200
           +NDFKM  ++TL
Sbjct: 323 DNDFKMAGMETL 334

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091128|ref|XP_002309189.1| predicted protein [Populus trichocarpa] gi|222855165|gb|EEE92712.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 100/121 (82%), Gaps = 5/121 (4%)

Query: 85  EIAEVKEEKRE--EEKDGSDGSSEKVKLR---RGRQVMRRSNLLAKQVISIQSAMSLGFV 139
           +I E+K+ +++  EE+D      E+ K+R   RG+QV+RRS++LAKQVISIQSA+SLGFV
Sbjct: 88  DILELKDGEKDGKEEQDLVAVEKERNKIRNGRRGKQVIRRSSILAKQVISIQSALSLGFV 147

Query: 140 SQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDT 199
           SQ+WVDT SWVVLVVEVRPNLLSGE ER LLED+ QVGDVVL+EDE+VM+ + KM+ L+T
Sbjct: 148 SQIWVDTKSWVVLVVEVRPNLLSGESERFLLEDVSQVGDVVLVEDENVMDTELKMIGLET 207

Query: 200 L 200
           L
Sbjct: 208 L 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487679|gb|ABK95664.1| unknown [Populus trichocarpa]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 100/121 (82%), Gaps = 5/121 (4%)

Query: 85  EIAEVKEEKRE--EEKDGSDGSSEKVKLR---RGRQVMRRSNLLAKQVISIQSAMSLGFV 139
           +I E+K+ +++  EE+D      E+ K+R   RG+QV+RRS++LAKQVISIQSA+SLGFV
Sbjct: 88  DILELKDGEKDGKEEQDLVAVEKERNKIRNGRRGKQVIRRSSILAKQVISIQSALSLGFV 147

Query: 140 SQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDT 199
           SQ+WVDT SWVVLVVEVRPNLLSGE ER LLED+ QVGDVVL+EDE+VM+ + KM+ L+T
Sbjct: 148 SQIWVDTKSWVVLVVEVRPNLLSGESERFLLEDVSQVGDVVLVEDENVMDTELKMIGLET 207

Query: 200 L 200
           L
Sbjct: 208 L 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575602|ref|XP_002528701.1| hypothetical protein RCOM_1058350 [Ricinus communis] gi|223531873|gb|EEF33690.1| hypothetical protein RCOM_1058350 [Ricinus communis]

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 84/91 (92%)

Query: 110 LRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLL 169
           LRRG+QV+RRSNLLAKQVISI SA++LGFVSQ+WVD  SW+VLVVEVRPNLLSGE ERLL
Sbjct: 3   LRRGKQVIRRSNLLAKQVISIHSALNLGFVSQIWVDIASWMVLVVEVRPNLLSGESERLL 62

Query: 170 LEDICQVGDVVLIEDESVMENDFKMVRLDTL 200
           LED+ +VGDVVL+EDE+V+EN+ KMV L+TL
Sbjct: 63  LEDVRRVGDVVLVEDETVLENEIKMVGLETL 93

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115452855|ref|NP_001050028.1| Os03g0334100 [Oryza sativa Japonica Group] gi|108707999|gb|ABF95794.1| expressed protein [Oryza sativa Japonica Group] gi|113548499|dbj|BAF11942.1| Os03g0334100 [Oryza sativa Japonica Group] gi|215767854|dbj|BAH00083.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 76/90 (84%)

Query: 111 RRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLL 170
           R+ RQ+ RRS LLAKQVIS+ SA SLGFVSQLWVD  SW+V +VEVRP+LLSGE E+ L 
Sbjct: 119 RKRRQMARRSGLLAKQVISVSSARSLGFVSQLWVDAASWIVALVEVRPSLLSGEAEKFLF 178

Query: 171 EDICQVGDVVLIEDESVMENDFKMVRLDTL 200
           EDI QVGDVVL+EDE+V+EN+FK+V L +L
Sbjct: 179 EDIYQVGDVVLVEDETVVENEFKLVGLHSL 208

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2064184	328	AT2G38570 "AT2G38570" [Arabido	0.436	0.271	0.688	2.4e-28

TAIR|locus:2064184 AT2G38570 "AT2G38570" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 62/90 (68%), Positives = 80/90 (88%)

Query:   112 RG-RQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLL 170
             RG +Q   RSNL+AKQV+SIQSA+SLGF+SQLWVDTTSW+VLVV+V+P+LLSGE ER LL
Sbjct:   112 RGFKQSTTRSNLVAKQVVSIQSALSLGFISQLWVDTTSWLVLVVDVKPSLLSGESERFLL 171

Query:   171 EDICQVGDVVLIEDESVMENDFKMVRLDTL 200
              DI +VGDVVL+++E+V++ +FKMV L+TL
Sbjct:   172 TDIVRVGDVVLVDNETVLDTEFKMVGLETL 201


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      204       181   0.00095  109 3  11 22  0.43    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  152 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.58u 0.16s 14.74t   Elapsed:  00:00:01
  Total cpu time:  14.58u 0.16s 14.74t   Elapsed:  00:00:01
  Start:  Sat May 11 09:25:00 2013   End:  Sat May 11 09:25:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
TIGR02888	76	spore_YlmC_YmxH sporulation protein, YlmC/YmxH fam	99.87
COG1873	87	Protein implicated in RNA metabolism, contains PRC	99.45
PF05239	79	PRC: PRC-barrel domain; InterPro: IPR007903 The PR	99.31
COG3881	176	PRC-barrel domain containing protein [General func	98.03
COG3881	176	PRC-barrel domain containing protein [General func	97.73
cd00226	246	PRCH Photosynthetic reaction center (RC) complex,	93.89

>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family

Probab=99.87  E-value=2e-22  Score=148.95  Aligned_cols=67  Identities=27%  Similarity=0.441  Sum_probs=60.5

Q ss_pred             EeccccCceeEeccCcceeeee--eeEEEECCCCEEEEEEECCC-----CCCCCCe-EEeccccceec-cEEEEec
Q 028747          118 RRSNLLAKQVISIQSAMSLGFV--SQLWVDTTSWVVLVVEVRPN-----LLSGEPE-RLLLEDICQVG-DVVLIED  184 (204)
Q Consensus       118 k~SeL~~KEVINi~dG~RLG~I--~DL~VD~~sG~V~AIiVp~~-----~f~ge~~-~IPWe~IkKIG-DVILVe~  184 (204)
                      |+|||++|||||++||+|||+|  .|+++|+++|+|.||++|++     ||+++.+ .|||++|+||| |+|||++
T Consensus         1 r~seL~~keVIni~~G~~lG~v~~~Dl~iD~~~G~I~aiIi~~~~~~~~~~~~~~~~~Ipw~~I~kIG~DvIlV~~   76 (76)
T TIGR02888         1 RLSDLRGKEIINVNDGERLGVIGNIDLEIDEEDGRILSLIIPGKGKKFGLFSKGEEIEIPWDAIKKIGSDVILVDV   76 (76)
T ss_pred             CHHHccCCCEEECCCCcEeeccccceEEEECCCCEEEEEEEeCCCcEEEeecCCcEEEEEhhhccEECCCEEEEeC
Confidence            5799999999999999999999  79999999999999999983     4565554 58999999999 9999984

Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.

>COG1873 Protein implicated in RNA metabolism, contains PRC-barrel domain [General function prediction only]

Probab=99.45  E-value=1.5e-13  Score=103.82  Aligned_cols=69  Identities=29%  Similarity=0.401  Sum_probs=58.6

Q ss_pred             ceeEeccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCC---CC--CCC-CeEEeccccceeccEEEEec
Q 028747          115 QVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN---LL--SGE-PERLLLEDICQVGDVVLIED  184 (204)
Q Consensus       115 qmmk~SeL~~KEVINi~dG~RLG~I~DL~VD~~sG~V~AIiVp~~---~f--~ge-~~~IPWe~IkKIGDVILVe~  184 (204)
                      .||++|+|.+|+|+|. +|++||.|.|+.+|.++|+|.++.+.++   +|  +++ ...|||+.|++|||.|++..
T Consensus         4 ~~~~~s~l~gk~V~~~-~G~~vG~V~dv~ld~~~g~i~~l~v~~~~~~l~~~~k~~~v~IP~~~V~aIGd~III~~   78 (87)
T COG1873           4 EMMRLSELLGKEVITN-DGKYVGTVSDVVLDIKEGKITGLLVIPTNKGLFLFGKGKEVIVPYEYVKAIGDIIIIKD   78 (87)
T ss_pred             hhheHHHhcCcEEEcC-CCeEEEEEEeEEEEccCCcEEEEEEecCCccccccCCCcEEEEehhHeEEecCEEEEec
Confidence            4689999999999999 9999999999999999999999999764   43  343 23589999999996666553

>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria

Probab=99.31  E-value=3.7e-12  Score=89.62  Aligned_cols=72  Identities=19%  Similarity=0.350  Sum_probs=62.5

Q ss_pred             ceeEeccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCC-CC--CCCeEEeccccceec-cEEEEecCCc
Q 028747          115 QVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNL-LS--GEPERLLLEDICQVG-DVVLIEDESV  187 (204)
Q Consensus       115 qmmk~SeL~~KEVINi~dG~RLG~I~DL~VD~~sG~V~AIiVp~~~-f~--ge~~~IPWe~IkKIG-DVILVe~~~~  187 (204)
                      .+++.|||.+++|+|.+ |+++|.|.|+.+|+.+|+|.++++..+. |+  ++...+||+++.++| |.|+|+....
T Consensus         2 ~~~~~s~l~g~~V~~~~-G~~iG~V~di~id~~~~~i~~i~v~~~~~~~~~~~~~~iP~~~~v~~~~~~i~v~~~~~   77 (79)
T PF05239_consen    2 DEFRLSELIGKEVIDRD-GEKIGKVKDIVIDPKTGKIVGIVVSSGGFFGIGGKKVLIPWDQIVDIGGDRIIVDPPKE   77 (79)
T ss_dssp             CHGCHHHHTTSEEEETT-SCEEEEEEEEEEETTTTEEEEEEEEETTSTCSSSEEEEEEGGEEEEECTTEEEESSSTG
T ss_pred             CeEEhHHccCCEEEcCC-CCEEEEEEEEEEeCCCCCEEEEEEcCCCccCcCCcEEEEcCeEeEEecCCEEEEcCCCC
Confidence            46889999999999998 9999999999999999999999998874 33  334568999888888 9999987653

PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....

>COG3881 PRC-barrel domain containing protein [General function prediction only]

Probab=98.03  E-value=1.6e-05  Score=67.78  Aligned_cols=69  Identities=16%  Similarity=0.328  Sum_probs=60.8

Q ss_pred             cccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCCCC---CCCeEEeccccceec-cEEEEecCCccc
Q 028747          121 NLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLS---GEPERLLLEDICQVG-DVVLIEDESVME  189 (204)
Q Consensus       121 eL~~KEVINi~dG~RLG~I~DL~VD~~sG~V~AIiVp~~~f~---ge~~~IPWe~IkKIG-DVILVe~~~~~e  189 (204)
                      ++++.++++-++|.+||.|.|+..|.++|+|+|.++..+||+   +....|+=.+-.++| |.++|..+..+.
T Consensus        85 e~m~mk~~lt~dG~iLGmveDVyFdek~gkIvgyevS~GffADlt~gRkiira~~~v~vgKD~~ivs~~~~~~  157 (176)
T COG3881          85 EIMNMKVILTYDGTILGMVEDVYFDEKTGKIVGYEVSRGFFADLTSGRKIIRAGNYVLVGKDLFIVSNDKNLS  157 (176)
T ss_pred             HhhcCceEeccCCcEeeeeeEEEEeccCCcEEEEEecCchhhhccCCceEEECCCcEEecccEEEecCCcchh
Confidence            566778888999999999999999999999999999999985   445678999999999 999998876543

>COG3881 PRC-barrel domain containing protein [General function prediction only]

Probab=97.73  E-value=8.2e-05  Score=63.46  Aligned_cols=85  Identities=16%  Similarity=0.149  Sum_probs=68.7

Q ss_pred             eeEeccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccccceec-cEEEEecCCcccc-ccc
Q 028747          116 VMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG-DVVLIEDESVMEN-DFK  193 (204)
Q Consensus       116 mmk~SeL~~KEVINi~dG~RLG~I~DL~VD~~sG~V~AIiVp~~~f~ge~~~IPWe~IkKIG-DVILVe~~~~~e~-~~~  193 (204)
                      |++--||.+.+|++..||++||.|.|+.+|.+.++|.++.+..+.+-..-..+|...|.-|| |.|+...+....+ -.+
T Consensus         1 Mit~~EleG~pVys~~tg~~lg~V~Dvif~~~gdrvl~flvnkggwfh~h~~lp~~~i~Sig~k~Imi~vp~~~~~~~~n   80 (176)
T COG3881           1 MITSRELEGAPVYSTKTGEKLGAVDDVIFNFSGDRVLGFLVNKGGWFHKHCCLPVKNIVSIGSKMIMIYVPYKGSFIRFN   80 (176)
T ss_pred             CccchhhcCCceEEecccccccceeeEEEecCCCeEEEEEEecCcEEeeeeeeeecceeeeccceEEEeccccceecccC
Confidence            56677999999999999999999999999999999999999776433556789999999999 9999887664332 344


Q ss_pred             cchhhhh
Q 028747          194 MVRLDTL  200 (204)
Q Consensus       194 ~~gl~~l  200 (204)
                      ...|+-|
T Consensus        81 s~~ye~m   87 (176)
T COG3881          81 SFTYEIM   87 (176)
T ss_pred             chhhHhh
Confidence            4444433

>cd00226 PRCH Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce ATP by ATP synthase

Probab=93.89  E-value=0.24  Score=44.61  Aligned_cols=61  Identities=23%  Similarity=0.258  Sum_probs=50.2

Q ss_pred             ccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccccceec-cEEEEe
Q 028747          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG-DVVLIE  183 (204)
Q Consensus       120 SeL~~KEVINi~dG~RLG~I~DL~VD~~sG~V~AIiVp~~~f~ge~~~IPWe~IkKIG-DVILVe  183 (204)
                      .|+++..|+.. ||+.+|.|.|+|+|..+|.|.-++|-.+. ++++..|| -.+.+|- +.|.|+
T Consensus       146 ~DprGl~V~g~-DGevvGtV~Dv~vD~~e~~iRYLeVdtg~-~gkkVLLP-i~~~rId~~~V~V~  207 (246)
T cd00226         146 VDPRGLPVVGA-DGEVAGKVTDLWVDRPEQLFRYLEVELAG-GGRTVLLP-MGFAKVKSDRVKVT  207 (246)
T ss_pred             CCCCCCEeEcC-CCcEeEEEEEEEEcCCcceEEEEEEEcCC-CCCEEEEE-eEEEEecCCEEEEe
Confidence            57999999998 99999999999999999999999987654 35555678 5556776 888887

Subunit H is positioned mainly in the cytoplasm with one transmembrane alpha helix. Provides proton transfer pathway (water channels) connecting the terminal quinone electron acceptor of RC, to the aqueous phase. Found in photosynthetic bacteria: alpha, beta, and gamma proteobacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1pm3a_	78	MTH1895 {Archaeon Methanobacterium thermoautotroph	98.7
d1rzhh1	213	Photosynthetic reaction centre {Rhodobacter sphaer	97.29
d2i5nh1	222	Photosynthetic reaction centre {Rhodopseudomonas v	97.19
d1eysh1	201	Photosynthetic reaction centre {Thermochromatium t	97.12
d2f1la1	75	16S rRNA processing protein RimM, C-terminal domai	82.34

>d1pm3a_ b.41.1.2 (A:) MTH1895 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: MTH1895
domain: MTH1895
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.70  E-value=2.4e-08  Score=64.36  Aligned_cols=70  Identities=21%  Similarity=0.278  Sum_probs=59.2

Q ss_pred             EEEECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCC-C-----CCCCCEEEECCCCCEECCEEEEECCC
Q ss_conf             26703366740575348612344302899778877999998899-8-----89998288153421112389991497
Q 028747          116 VMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN-L-----LSGEPERLLLEDICQVGDVVLIEDES  186 (204)
Q Consensus       116 mmrrSeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~-l-----f~ge~~~IPWe~IkKIGDVILVe~~~  186 (204)
                      |....||.+|+|++- +++-.|-|.|+++|+++|.|.++++..+ .     +.+.+..+|.++|++|||.||+..++
T Consensus         2 mRi~~dliGk~VlD~-~A~~IGkV~DvEiD~esg~vtsLiI~k~Gis~~igl~~~e~~Vp~e~V~~IGD~VlL~~~~   77 (78)
T d1pm3a_           2 MRIVEEMVGKEVLDS-SAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPYEMVKKIGDKILLKGPE   77 (78)
T ss_dssp             EETTTTSSSCEEECT-TSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEGGGEEEESSSEEECCTT
T ss_pred             CCHHHHHHCCHHCCC-CCCEEEEEEEEEECCCCCEEEEEEECCCCCCHHHCCCCCEEECCHHHHHHHCCEEEEECCC
T ss_conf             245875728500066-4101123545798677780689997376411010004870881799974322489983799

>d1rzhh1 b.41.1.1 (H:36-248) Photosynthetic reaction centre {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: Photosynthetic reaction centre, H-chain, cytoplasmic domain
domain: Photosynthetic reaction centre
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.29  E-value=0.00058  Score=39.73  Aligned_cols=63  Identities=21%  Similarity=0.275  Sum_probs=51.9

Q ss_pred             EEECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEC-CEEEEE
Q ss_conf             6703366740575348612344302899778877999998899889998288153421112-389991
Q 028747          117 MRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG-DVVLIE  183 (204)
Q Consensus       117 mrrSeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~lf~ge~~~IPWe~IkKIG-DVILVe  183 (204)
                      -+-.|+++..|+.. ||.++|.|.|+|||..++.|.-+.|.-+  +++...+||... +|. |-+.|+
T Consensus       108 ~~~~DprG~~V~~~-DG~kIGtV~DvwvD~~e~~vRYleV~tg--ggk~vLvP~~~a-~i~~d~V~V~  171 (213)
T d1rzhh1         108 SAGKNPIGLPVRGC-DLEIAGKVVDIWVDIPEQMARFLEVELK--DGSTRLLPMQMV-KVQSNRVHVN  171 (213)
T ss_dssp             EESCCCTTCEEEET-TSCEEEEEEEEEEETTTTEEEEEEEECT--TSCEEEEEGGGC-EECSSCEEES
T ss_pred             ECCCCCCCCEEECC-CCCCCEEEEEEEEECCCCCEEEEEEEEC--CCCEEEECHHHE-EECCCEEEEC
T ss_conf             44788567843868-9985307889999788785889999928--985897034525-8669928983

>d2i5nh1 b.41.1.1 (H:37-258) Photosynthetic reaction centre {Rhodopseudomonas viridis [TaxId: 1079]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: Photosynthetic reaction centre, H-chain, cytoplasmic domain
domain: Photosynthetic reaction centre
species: Rhodopseudomonas viridis [TaxId: 1079]

Probab=97.19  E-value=0.00041  Score=40.58  Aligned_cols=62  Identities=19%  Similarity=0.272  Sum_probs=50.5

Q ss_pred             ECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEC-CEEEEE
Q ss_conf             03366740575348612344302899778877999998899889998288153421112-389991
Q 028747          119 RSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG-DVVLIE  183 (204)
Q Consensus       119 rSeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~lf~ge~~~IPWe~IkKIG-DVILVe  183 (204)
                      ..|+++..|+. .||.++|.|.|+|||..++.|.-+.|.-++ ++....+||... +|. |-+.|.
T Consensus       113 ~~DprG~~V~g-~DGekIGtV~DvwVD~~e~~vRYleVetg~-ggk~vLvP~~~a-~i~~d~v~V~  175 (222)
T d2i5nh1         113 DVDPRGLPVVA-ADGVEAGTVTDLWVDRSEHYFRYLELSVAG-SARTALIPLGFC-DVKKDKIVVT  175 (222)
T ss_dssp             SCCCTTCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEEETT-TTEEEEEEGGGC-EECSSCEECC
T ss_pred             CCCCCCCEEEC-CCCCEEEEEEEEEEECCCCEEEEEEEEECC-CCCEEEEEHHHC-EECCCCEEEC
T ss_conf             88755674586-899861278898996888859999998289-885576320211-6558938982

>d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre {Thermochromatium tepidum [TaxId: 1050]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: Photosynthetic reaction centre, H-chain, cytoplasmic domain
domain: Photosynthetic reaction centre
species: Thermochromatium tepidum [TaxId: 1050]

Probab=97.12  E-value=0.00077  Score=39.05  Aligned_cols=62  Identities=18%  Similarity=0.254  Sum_probs=50.3

Q ss_pred             ECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEC---CEEEEE
Q ss_conf             03366740575348612344302899778877999998899889998288153421112---389991
Q 028747          119 RSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG---DVVLIE  183 (204)
Q Consensus       119 rSeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~lf~ge~~~IPWe~IkKIG---DVILVe  183 (204)
                      ..|+++..|+.. ||++.|.|.|+|||..+++|.-++|.-++ ++....+||. ..+|.   +-+.|+
T Consensus        90 ~~DprG~~V~~~-DG~~vGtV~Dv~vD~~e~~vRYleVdtg~-ggk~vLvP~~-~a~id~~~~~V~V~  154 (201)
T d1eysh1          90 DPDPRGMTVVGL-DGEVAGTVSDVWVDRSEPQIRYLEVEVAA-NKKKVLLPIG-FSRFDKKARKVKVD  154 (201)
T ss_dssp             SCCCTTCEEECS-SSCEEEEEEEEEEETTTTEEEEEEEEETT-TCCEEEEEGG-GCEEEGGGTEEECS
T ss_pred             CCCCCCCEEECC-CCCEEEEEEEEEEECCCCCEEEEEEEECC-CCCEEEEEEE-EEEECCCCCEEEEE
T ss_conf             898545745838-99878788889997888928899999558-9957997620-02763888889992

>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: RimM C-terminal domain-like
domain: 16S rRNA processing protein RimM, C-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.34  E-value=1.4  Score=20.80  Aligned_cols=52  Identities=23%  Similarity=0.223  Sum_probs=38.4

Q ss_pred             ECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCC
Q ss_conf             033667405753486123443028997788779999988998899982881534
Q 028747          119 RSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLED  172 (204)
Q Consensus       119 rSeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~lf~ge~~~IPWe~  172 (204)
                      ..||.+-+|+|.. |+.||.|.++ .+.-++.+..+-.+.+-..+++..||+..
T Consensus         3 ~~dLiG~~V~d~~-g~~lG~V~~v-~~~ga~dll~I~~~~~~~~~keiLIP~v~   54 (75)
T d2f1la1           3 WHQLEGLKVIDQG-RQLLGVIDHL-LETGANDVMVVKPCAGSLDDRERLLPYTG   54 (75)
T ss_dssp             HHHHTTCEEEETT-SCEEEEEEEE-ECCSSSCEEEEECCTTSSSSCCEEEECST
T ss_pred             HHHCCCCEEEECC-CCEEEEEEEE-CCCCCCCEEEEEECCCCCCCEEEEEECCC
T ss_conf             7994897999489-9998999898-10699329999827888898099998572