Citrus Sinensis ID: 028761

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHccccccccccccccccHHHHHHHHHHHHcccEEcccEEEEEEEEcccEEEEEEccEEEEcccccEEEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHcccccccHHHHHcccccHHHHHHHHHHccccccccEEEEEEEccccEEEEEcccccEccccccEEEEEcccEHHcHHHHHHHHHHHHHcccccccccccccccccHHcHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MTAQTQEELLASLLEQqkidddkpvveddedededededdekdedeadeghrdgeaggrskqsrSEKKSRKAMLKLgmkpipgvsrvtvkkskNILFviskpdvfkspttdtyVIFGEAKIEDLSSQLQTQAAEqfkapdlshvvskpessamaqddeevdetgvepkdIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Flexible Loop (DISEMBL)
MTAQTQEELLASLleqqkidddkpvveddedededededdekdedeadeghrdgeaggrskqsrsekKSRKAmlklgmkpipgvsrvtvkksknilfviskpdvfksptTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPessamaqddeevdetgvepKDIELVMTQAGVSRAKAVKalkaadgdiVSAIMELTN
Low Complexity Region (SEG)
MTAqtqeellaslleqqKIdddkpvveddedededededdekdedeadeGHRDGEAGGrskqsrsekksrkAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Disordered region (IsUnstruct)
**********************************************************************************GVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKI******************************************************************L******I*********
Disordered Region (DISOPRED)
***************************************************************************LGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA*********************************************VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT*
Disordered Region (DISEMBL)
MTAQTQEELLASLLEQQKIDD**************************************************AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFK***************************VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Disordered Region (DISPRO)
******************************************************************KK*RK*MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQ***************************TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q9M612	205	Nascent polypeptide-assoc	N/A	no	0.921	0.917	0.760	2e-68
Q9LHG9	203	Nascent polypeptide-assoc	yes	no	0.965	0.970	0.776	2e-66
Q6ICZ8	204	Nascent polypeptide-assoc	no	no	0.965	0.965	0.729	1e-63
Q94JX9	217	Nascent polypeptide-assoc	no	no	0.897	0.843	0.630	4e-54
Q9SZY1	212	Nascent polypeptide-assoc	no	no	0.705	0.679	0.733	1e-51
Q8LGC6	209	Nascent polypeptide-assoc	no	no	0.710	0.693	0.695	3e-50
Q8AWF2	215	Nascent polypeptide-assoc	yes	no	0.740	0.702	0.632	1e-44
Q8JIU7	215	Nascent polypeptide-assoc	yes	no	0.740	0.702	0.619	3e-43
Q60817	215	Nascent polypeptide-assoc	yes	no	0.740	0.702	0.619	6e-43
Q13765	215	Nascent polypeptide-assoc	yes	no	0.740	0.702	0.619	6e-43

>sp|Q9M612|NACA_PINTA Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1

 Score =  258 bits (659), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/196 (76%), Positives = 172/196 (87%), Gaps = 8/196 (4%)

Query: 11  ASLLEQQKID-DDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRSEKKS 69
           A+ LEQQ+++  D+P++EDDED+D++ED++DE D     +G + GE  G+SKQSRSEKK 
Sbjct: 16  AAKLEQQELEHSDEPILEDDEDDDDEEDDNDEDDA----QGEQGGE--GKSKQSRSEKKC 69

Query: 70  RKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQ 129
           RKAMLKLGMKP+ GVSRVT+KKSKNILFVIS PDVFKSPT+DTY+ FGEAKIEDLSSQLQ
Sbjct: 70  RKAMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQ 129

Query: 130 TQAAEQFKAPDLSHVVSKPESSAMAQDDE-EVDETGVEPKDIELVMTQAGVSRAKAVKAL 188
           TQAAEQFKAP+LSHV  KPESS  AQ+DE EVD+TGVEPKDIELVMTQAGVSR KAVKAL
Sbjct: 130 TQAAEQFKAPNLSHVTMKPESSTAAQEDEDEVDDTGVEPKDIELVMTQAGVSRTKAVKAL 189

Query: 189 KAADGDIVSAIMELTN 204
           KAADGDIVSAIM+LT 
Sbjct: 190 KAADGDIVSAIMDLTT 205

May promote appropriate targeting of ribosome-nascent polypeptide complexes.
Pinus taeda (taxid: 3352)

>sp|Q9LHG9|NACA1_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1

 Score =  251 bits (642), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 156/201 (77%), Positives = 178/201 (88%), Gaps = 4/201 (1%)

Query: 6   QEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRS 65
           ++E+LA+ LE+QKID DKP  E ++D+D ++D+ D+ D+D+ +    DGEAGG+SKQSRS
Sbjct: 5   EKEILAAKLEEQKIDLDKP--EVEDDDDNEDDDSDDDDKDDDEADGLDGEAGGKSKQSRS 62

Query: 66  EKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 125
           EKKSRKAMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP +DTYVIFGEAKIEDLS
Sbjct: 63  EKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLS 122

Query: 126 SQLQTQAAEQFKAPDLSHVVSKPESSAMA--QDDEEVDETGVEPKDIELVMTQAGVSRAK 183
           SQ+Q+QAAEQFKAPDLS+V+SK ESS+ A  QDDEEVDE GVEPKDIELVMTQAGVSR  
Sbjct: 123 SQIQSQAAEQFKAPDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPN 182

Query: 184 AVKALKAADGDIVSAIMELTN 204
           AVKALKAADGDIVSAIMELT 
Sbjct: 183 AVKALKAADGDIVSAIMELTT 203

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ICZ8|NACA3_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1

 Score =  242 bits (617), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 154/211 (72%), Positives = 178/211 (84%), Gaps = 14/211 (6%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTA+ + EL A+ LE+QKID DKP     E ED+D++++D+ ++D+  EGH DGEAGGRS
Sbjct: 1   MTAEQKVEL-AAKLEEQKIDLDKP-----EVEDDDDNDEDDSEDDDEAEGH-DGEAGGRS 53

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP +DTYVIFGEAK
Sbjct: 54  KQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAK 113

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPE-------SSAMAQDDEEVDETGVEPKDIELV 173
           IEDLSSQLQ+QAAEQFKAP+LS+V+S+ E       ++    DDEEVDE GVEPKDIELV
Sbjct: 114 IEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELV 173

Query: 174 MTQAGVSRAKAVKALKAADGDIVSAIMELTN 204
           MTQAGVS+ +AVKALK A+GDIVSAIMELT 
Sbjct: 174 MTQAGVSKPRAVKALKLANGDIVSAIMELTT 204

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JX9|NACA2_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2

 Score =  211 bits (536), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 160/195 (82%), Gaps = 12/195 (6%)

Query: 16  QQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRSEKKSRKAMLK 75
           ++K+  D+P+VED +D+++D+D+D+E+++D+A          G SKQSRSEKKSRKAMLK
Sbjct: 29  EKKLQTDEPIVEDVKDDEDDDDDDEEEEDDDAQG------VSGSSKQSRSEKKSRKAMLK 82

Query: 76  LGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQ 135
           LGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP ++TYVIFGEAKIEDLSSQLQTQAA+Q
Sbjct: 83  LGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQ 142

Query: 136 FKAPDLSHVVSKPESSA------MAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALK 189
           F+ P++     + E+S       + +D+EE+DETGVE +DI+LVMTQAGVSR+KAVKALK
Sbjct: 143 FRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAVKALK 202

Query: 190 AADGDIVSAIMELTN 204
           + DGDIVSAIMELT 
Sbjct: 203 SHDGDIVSAIMELTT 217

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY1|NACA4_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1

 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/150 (73%), Positives = 131/150 (87%), Gaps = 6/150 (4%)

Query: 60  SKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 119
           SKQSRSEKKSRKAMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP ++TYVIFGEA
Sbjct: 62  SKQSRSEKKSRKAMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEA 121

Query: 120 KIEDLSSQLQTQAAEQFKAPDLSHVVSK---PESSAMAQ---DDEEVDETGVEPKDIELV 173
           KI+D+SSQLQ QAA++FK PD++ ++      E++ +AQ   DDE+VDETGVE KDI+LV
Sbjct: 122 KIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKDIDLV 181

Query: 174 MTQAGVSRAKAVKALKAADGDIVSAIMELT 203
           MTQAGVSR KAVKALK ++GDIVSAIMELT
Sbjct: 182 MTQAGVSRPKAVKALKESNGDIVSAIMELT 211

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGC6|NACA5_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2

 Score =  197 bits (502), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 130/151 (86%), Gaps = 6/151 (3%)

Query: 60  SKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 119
           +KQSRSEKKSRKA+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP  +TYVIFGEA
Sbjct: 59  AKQSRSEKKSRKAVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEA 118

Query: 120 KIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSA-MA-----QDDEEVDETGVEPKDIELV 173
           K++DLSSQLQTQAA++FK PD++ ++    S A MA     +D+++VD+TGVE +DI+LV
Sbjct: 119 KVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGVEARDIDLV 178

Query: 174 MTQAGVSRAKAVKALKAADGDIVSAIMELTN 204
           MTQAGVS+AKAV ALKA DGDIVSAIMELT 
Sbjct: 179 MTQAGVSKAKAVSALKANDGDIVSAIMELTT 209

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1

 Score =  179 bits (454), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 124/155 (80%), Gaps = 4/155 (2%)

Query: 53  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 112
           D E   ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DT
Sbjct: 60  DEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDT 119

Query: 113 YVIFGEAKIEDLSSQLQTQAAEQFKAP--DLSHVVSKPESSAM--AQDDEEVDETGVEPK 168
           Y++FGEAKIEDLS Q Q  AAE+FK P   +S+V    ++  +    ++EEVDETGVE K
Sbjct: 120 YIVFGEAKIEDLSQQAQLAAAEKFKVPGETVSNVQENTQTPTVQEESEEEEVDETGVEVK 179

Query: 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
           DIELVM+QA VSRAKAV+ALK  + DIV+AIMELT
Sbjct: 180 DIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Oreochromis niloticus (taxid: 8128)

>sp|Q8JIU7|NACA_DANRE Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1

 Score =  174 bits (442), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 123/155 (79%), Gaps = 4/155 (2%)

Query: 53  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 112
           D E   ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DT
Sbjct: 60  DEEPVSKAKQSRSEKKARKAMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDT 119

Query: 113 YVIFGEAKIEDLSSQLQTQAAEQFKAPD--LSHVVSKPESSAM--AQDDEEVDETGVEPK 168
           Y++FGEAKIEDLS Q Q  AAE+FK     +S++    ++  +    ++EEVDETGVE K
Sbjct: 120 YIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 179

Query: 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
           DIELVM+QA VSRAKAV+ALK  + DIV+AIMELT
Sbjct: 180 DIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Danio rerio (taxid: 7955)

>sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex subunit alpha OS=Mus musculus GN=Naca PE=1 SV=1

 Score =  173 bits (439), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 122/155 (78%), Gaps = 4/155 (2%)

Query: 53  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 112
           D E   ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DT
Sbjct: 60  DEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDT 119

Query: 113 YVIFGEAKIEDLSSQLQTQAAEQFKAPD--LSHVVSKPESSAM--AQDDEEVDETGVEPK 168
           Y++FGEAKIEDLS Q Q  AAE+FK     +S++    ++  +    ++EEVDETGVE K
Sbjct: 120 YIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 179

Query: 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
           DIELVM+QA VSRAKAV+ALK    DIV+AIMELT
Sbjct: 180 DIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214

Prevents inappropriate targeting of non-secretory polypeptides to the endoplasmic reticulum (ER). Binds to nascent polypeptide chains as they emerge from the ribosome and blocks their interaction with the signal recognition particle (SRP), which normally targets nascent secretory peptides to the ER. Also reduces the inherent affinity of ribosomes for protein translocation sites in the ER membrane (M sites) (By similarity). Isoform 1 and isoform 2 appear to bind DNA and play roles in transcription. Isoform 1 may function as a specific coactivator for JUN, acting to stabilize the interaction of JUN homodimers with promoter elements.

Mus musculus (taxid: 10090)

>sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex subunit alpha OS=Homo sapiens GN=NACA PE=1 SV=1

 Score =  173 bits (439), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 122/155 (78%), Gaps = 4/155 (2%)

Query: 53  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 112
           D E   ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DT
Sbjct: 60  DEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDT 119

Query: 113 YVIFGEAKIEDLSSQLQTQAAEQFKAPD--LSHVVSKPESSAM--AQDDEEVDETGVEPK 168
           Y++FGEAKIEDLS Q Q  AAE+FK     +S++    ++  +    ++EEVDETGVE K
Sbjct: 120 YIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 179

Query: 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
           DIELVM+QA VSRAKAV+ALK    DIV+AIMELT
Sbjct: 180 DIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214

Prevents inappropriate targeting of non-secretory polypeptides to the endoplasmic reticulum (ER). Binds to nascent polypeptide chains as they emerge from the ribosome and blocks their interaction with the signal recognition particle (SRP), which normally targets nascent secretory peptides to the ER. Also reduces the inherent affinity of ribosomes for protein translocation sites in the ER membrane (M sites). May act as a specific coactivator for JUN, binding to DNA and stabilizing the interaction of JUN homodimers with target gene promoters.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
118482608	205	unknown [Populus trichocarpa]	1.0	0.995	0.848	4e-84
225470846	202	PREDICTED: nascent polypeptide-associate	0.990	1.0	0.808	3e-81
118481688	204	unknown [Populus trichocarpa]	0.995	0.995	0.824	3e-81
449453141	200	PREDICTED: nascent polypeptide-associate	0.980	1.0	0.803	2e-80
449529584	200	PREDICTED: nascent polypeptide-associate	0.980	1.0	0.813	2e-80
449453139	200	PREDICTED: nascent polypeptide-associate	0.980	1.0	0.808	2e-80
351722347	203	uncharacterized protein LOC100500056 [Gl	0.995	1.0	0.818	2e-79
170773910	199	nascent polypeptide associated complex a	0.975	1.0	0.789	2e-78
359481448	202	PREDICTED: nascent polypeptide-associate	0.990	1.0	0.799	2e-78
356571874	202	PREDICTED: nascent polypeptide-associate	0.990	1.0	0.828	2e-78

>gi|118482608|gb|ABK93224.1| unknown [Populus trichocarpa]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/205 (84%), Positives = 193/205 (94%), Gaps = 1/205 (0%)

Query: 1   MTAQTQEELLASLLEQQKI-DDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGR 59
           MTAQTQEELLA+ LE QKI + DKP VED+ED+DED+++D++  +++  EG +DG+ GGR
Sbjct: 1   MTAQTQEELLAAQLEVQKILEADKPEVEDEEDDDEDDEDDEDDKDEDEAEGQQDGDVGGR 60

Query: 60  SKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 119
           SKQSRSEKKSRKAMLKLGMK IPGVSRVTVKKSKNILFVISKPDVFKSPT+DTYVIFGEA
Sbjct: 61  SKQSRSEKKSRKAMLKLGMKTIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVIFGEA 120

Query: 120 KIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGV 179
           KIEDLSSQLQTQAAEQFKAPDLSHV+SKPE+SA+AQDDEEVDETGVEPKDIELVMTQAGV
Sbjct: 121 KIEDLSSQLQTQAAEQFKAPDLSHVISKPETSAIAQDDEEVDETGVEPKDIELVMTQAGV 180

Query: 180 SRAKAVKALKAADGDIVSAIMELTN 204
           SR+KAVKALKAADGDIVSAIMELTN
Sbjct: 181 SRSKAVKALKAADGDIVSAIMELTN 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470846|ref|XP_002266597.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like [Vitis vinifera] gi|298205090|emb|CBI40611.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 165/204 (80%), Positives = 190/204 (93%), Gaps = 2/204 (0%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQTQEELLA+ LEQQKI+ D+     +E++D+D+++D++  +++  EG + G+A GRS
Sbjct: 1   MTAQTQEELLAAHLEQQKINPDE--PVVEEEDDDDDEDDEDDKDEDDVEGEQGGDASGRS 58

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT+DTYVIFGEAK
Sbjct: 59  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVIFGEAK 118

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAPDLS+V++KPE+S+MAQDDE+VDETGVEPKDIELVMTQAGVS
Sbjct: 119 IEDLSSQLQTQAAEQFKAPDLSNVIAKPEASSMAQDDEDVDETGVEPKDIELVMTQAGVS 178

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R+KAVKALKAADGDIVSAIMELTN
Sbjct: 179 RSKAVKALKAADGDIVSAIMELTN 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481688|gb|ABK92784.1| unknown [Populus trichocarpa]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 169/205 (82%), Positives = 190/205 (92%), Gaps = 2/205 (0%)

Query: 1   MTAQTQEELLASLLEQQKI-DDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGR 59
           MTAQTQEELLA+ LE QKI + DKP   +DE++DE++D++D+  +++  EG +DG+A GR
Sbjct: 1   MTAQTQEELLAAQLEIQKILEADKPE-VEDEEDDEEDDDEDDDKDEDEAEGQQDGDASGR 59

Query: 60  SKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 119
           SKQSRSEKKSRKAMLKLGMK IPGVSRVTVKKSKNILFVISKPDVFKSPT+DTYVIFGEA
Sbjct: 60  SKQSRSEKKSRKAMLKLGMKTIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVIFGEA 119

Query: 120 KIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGV 179
           KIEDLSSQLQTQAAEQFKAPDLSHV+SKPE+SA+AQDDEEVDETGVEPKDIELVMTQAGV
Sbjct: 120 KIEDLSSQLQTQAAEQFKAPDLSHVISKPETSAVAQDDEEVDETGVEPKDIELVMTQAGV 179

Query: 180 SRAKAVKALKAADGDIVSAIMELTN 204
           SR+KAVKALKAADGDIVSAIM+LT 
Sbjct: 180 SRSKAVKALKAADGDIVSAIMDLTT 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453141|ref|XP_004144317.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus] gi|449529586|ref|XP_004171779.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/204 (80%), Positives = 190/204 (93%), Gaps = 4/204 (1%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQT+EELLA+ LE+QKI+ D+PV+EDD+D+++D+++DD+  +++  EGH  GEA GRS
Sbjct: 1   MTAQTKEELLAAQLEEQKINADEPVIEDDDDDEDDDEDDDK--DEDDVEGH--GEASGRS 56

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT+DTY++FGEAK
Sbjct: 57  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAK 116

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAP+LS++ SKPE S +AQDDE VDETGVEPKDIELVMTQAGVS
Sbjct: 117 IEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVAQDDEVVDETGVEPKDIELVMTQAGVS 176

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R +AVKALKAA+GDIVSAIMELTN
Sbjct: 177 RPRAVKALKAAEGDIVSAIMELTN 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529584|ref|XP_004171778.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 166/204 (81%), Positives = 188/204 (92%), Gaps = 4/204 (1%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQT+EELLA+ LE+QKI+ D+PV+EDD+D+D+D+++DD   +D+  EGH  GEA GRS
Sbjct: 1   MTAQTKEELLAAQLEEQKINADEPVIEDDDDDDDDDEDDD--KDDDDVEGH--GEASGRS 56

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT+DTY++FGEAK
Sbjct: 57  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAK 116

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAP+LS++ SKPE S + QDDEEVDETGVEPKDIELVMTQAGVS
Sbjct: 117 IEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVVQDDEEVDETGVEPKDIELVMTQAGVS 176

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R KAVKALKA +GDIVSAIMELTN
Sbjct: 177 RPKAVKALKATEGDIVSAIMELTN 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453139|ref|XP_004144316.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/204 (80%), Positives = 188/204 (92%), Gaps = 4/204 (1%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQT+EELLA+ LE+QKI+ D+PV+EDD+D+D+D+++DD   +++  EGH  GEA GRS
Sbjct: 1   MTAQTKEELLAAQLEEQKINADEPVIEDDDDDDDDDEDDD--KDEDDVEGH--GEASGRS 56

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT+DTY++FGEAK
Sbjct: 57  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAK 116

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAP+LS++ SKPE S + QDDEEVDETGVEPKDIELVMTQAGVS
Sbjct: 117 IEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVVQDDEEVDETGVEPKDIELVMTQAGVS 176

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R KAVKALKA +GDIVSAIMELTN
Sbjct: 177 RPKAVKALKATEGDIVSAIMELTN 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722347|ref|NP_001236217.1| uncharacterized protein LOC100500056 [Glycine max] gi|255628877|gb|ACU14783.1| unknown [Glycine max]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/204 (81%), Positives = 187/204 (91%), Gaps = 1/204 (0%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MT QTQEELLA  LEQQKI DD+PVVEDD DE+ED+D+D++  +D+  +G  +G+A GRS
Sbjct: 1   MTTQTQEELLAQHLEQQKIHDDEPVVEDDNDEEEDDDDDEDDKDDDHADG-LEGDASGRS 59

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQ+RSEKKSRKAMLKLGMKP+ GVSRVTVKKSKNILFVISKPDVFKSPT+DTY+IFGEAK
Sbjct: 60  KQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAK 119

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAP+LS+V SKPESSA+AQDDEEVDE GV+PKDIELVMTQAGVS
Sbjct: 120 IEDLSSQLQTQAAEQFKAPNLSNVGSKPESSAVAQDDEEVDEAGVDPKDIELVMTQAGVS 179

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R KAVKALKAA GDIV+AIMELTN
Sbjct: 180 RPKAVKALKAAGGDIVAAIMELTN 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|170773910|gb|ACB32231.1| nascent polypeptide associated complex alpha [Solanum chacoense]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/204 (78%), Positives = 186/204 (91%), Gaps = 5/204 (2%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQ+QEELLA+ LEQQK++ + P++ED+ED+D+D+D++ + D+ E       G+  GRS
Sbjct: 1   MTAQSQEELLAAHLEQQKLESEVPIIEDEEDDDDDDDDEKDDDDAEEL-----GDGSGRS 55

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSP +DTYVIFGEAK
Sbjct: 56  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPNSDTYVIFGEAK 115

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQ+QAAEQFKAP+LS+V+SKPE S +AQDDE+VDETGVEPKDIELVMTQAGVS
Sbjct: 116 IEDLSSQLQSQAAEQFKAPNLSNVISKPEPSTVAQDDEDVDETGVEPKDIELVMTQAGVS 175

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           RAKAVKAL+AADGDIVSAIME+TN
Sbjct: 176 RAKAVKALRAADGDIVSAIMEITN 199

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481448|ref|XP_003632619.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like isoform 2 [Vitis vinifera]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/204 (79%), Positives = 187/204 (91%), Gaps = 2/204 (0%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQTQEELLA+ LE+QKI+ D+PVVED++DED+D+D+DD+  +++  EG  DG   GRS
Sbjct: 1   MTAQTQEELLAAHLEEQKINPDEPVVEDEDDEDDDDDDDDDDKDEDDAEGQDDG--SGRS 58

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQSRSEKKSRKAMLKLGMK IPGVSRVT+KKSKNILFVISKPDVFKSPT+DTYVIFGEAK
Sbjct: 59  KQSRSEKKSRKAMLKLGMKTIPGVSRVTIKKSKNILFVISKPDVFKSPTSDTYVIFGEAK 118

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAP++    ++PE++A+ QDDEEVDETGVEPKDI+LVMTQAGVS
Sbjct: 119 IEDLSSQLQTQAAEQFKAPNVHPAAAQPETAAVVQDDEEVDETGVEPKDIDLVMTQAGVS 178

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R+KAVKALKAADGDIVSAIMELTN
Sbjct: 179 RSKAVKALKAADGDIVSAIMELTN 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571874|ref|XP_003554096.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Glycine max]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/204 (82%), Positives = 189/204 (92%), Gaps = 2/204 (0%)

Query: 1   MTAQTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRS 60
           MTAQTQEELLA  LEQQKI D +PVVEDD+DE+ED+D+DD++D+D A EG  +G+A GRS
Sbjct: 1   MTAQTQEELLAQHLEQQKIHDGEPVVEDDDDEEEDDDDDDDEDDDHA-EG-LEGDASGRS 58

Query: 61  KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK 120
           KQ+RSEKKSRKAMLKLGMKP+ GVSRVTVKKSKNILFVISKPDVFKSPT++TY+IFGEAK
Sbjct: 59  KQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSETYIIFGEAK 118

Query: 121 IEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVS 180
           IEDLSSQLQTQAAEQFKAP+LS+V  KPESSA+AQDDEEVDE GV+PKDIELVMTQAGVS
Sbjct: 119 IEDLSSQLQTQAAEQFKAPNLSNVGLKPESSAVAQDDEEVDEAGVDPKDIELVMTQAGVS 178

Query: 181 RAKAVKALKAADGDIVSAIMELTN 204
           R KAVKALKAA GDIV+AIMELTN
Sbjct: 179 RPKAVKALKAASGDIVAAIMELTN 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2092462	203	AT3G12390 [Arabidopsis thalian	0.740	0.743	0.816	1.4e-57
TAIR|locus:2159093	204	NACA3 "AT5G13850" [Arabidopsis	0.75	0.75	0.751	3.4e-54
TAIR|locus:2114703	217	NACA2 "AT3G49470" [Arabidopsis	0.647	0.608	0.702	7.9e-46
TAIR|locus:2127681	212	AT4G10480 "AT4G10480" [Arabido	0.647	0.622	0.702	1.6e-45
TAIR|locus:2206975	209	NACA5 "AT1G33040" [Arabidopsis	0.740	0.722	0.613	6.4e-44
FB|FBgn0086904	217	Nacalpha "Nascent polypeptide	0.642	0.603	0.632	7e-38
UNIPROTKB|Q5E9A1	215	NACA "Nascent polypeptide-asso	0.647	0.613	0.617	7e-38
UNIPROTKB|Q13765	215	NACA "Nascent polypeptide-asso	0.647	0.613	0.617	7e-38
MGI|MGI:106095	215	Naca "nascent polypeptide-asso	0.647	0.613	0.617	7e-38
UNIPROTKB|H9KYU8	192	NACA2 "Uncharacterized protein	0.642	0.682	0.607	1e-36

TAIR|locus:2092462 AT3G12390 [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 125/153 (81%), Positives = 131/153 (85%)

Query:    53 DGEAGGXXXXXXXXXXXXXAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 112
             DGEAGG             AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP +DT
Sbjct:    50 DGEAGGKSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDT 109

Query:   113 YVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESS--AMAQDDEEVDETGVEPKDI 170
             YVIFGEAKIEDLSSQ+Q+QAAEQFKAPDLS+V+SK ESS  A+ QDDEEVDE GVEPKDI
Sbjct:   110 YVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDI 169

Query:   171 ELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
             ELVMTQAGVSR  AVKALKAADGDIVSAIMELT
Sbjct:   170 ELVMTQAGVSRPNAVKALKAADGDIVSAIMELT 202

GO:0005634 "nucleus" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2159093 NACA3 "AT5G13850" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 121/161 (75%), Positives = 132/161 (81%)

Query:    50 GHRDGEAGGXXXXXXXXXXXXXAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 109
             GH DGEAGG             AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP 
Sbjct:    44 GH-DGEAGGRSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPA 102

Query:   110 TDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMA-------QDDEEVDE 162
             +DTYVIFGEAKIEDLSSQLQ+QAAEQFKAP+LS+V+S+ E+S+ A        DDEEVDE
Sbjct:   103 SDTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDE 162

Query:   163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
              GVEPKDIELVMTQAGVS+ +AVKALK A+GDIVSAIMELT
Sbjct:   163 EGVEPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELT 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0051604 "protein maturation" evidence=RCA

TAIR|locus:2114703 NACA2 "AT3G49470" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 97/138 (70%), Positives = 118/138 (85%)

Query:    72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 131
             AMLKLGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP ++TYVIFGEAKIEDLSSQLQTQ
Sbjct:    79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQ 138

Query:   132 AAEQFKAPDLSHVVSKPESSA------MAQDDEEVDETGVEPKDIELVMTQAGVSRAKAV 185
             AA+QF+ P++     + E+S       + +D+EE+DETGVE +DI+LVMTQAGVSR+KAV
Sbjct:   139 AAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAV 198

Query:   186 KALKAADGDIVSAIMELT 203
             KALK+ DGDIVSAIMELT
Sbjct:   199 KALKSHDGDIVSAIMELT 216

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2127681 AT4G10480 "AT4G10480" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 97/138 (70%), Positives = 117/138 (84%)

Query:    72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 131
             AMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP ++TYVIFGEAKI+D+SSQLQ Q
Sbjct:    74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQ 133

Query:   132 AAEQFKAPDLSHVVSKPESSAMA------QDDEEVDETGVEPKDIELVMTQAGVSRAKAV 185
             AA++FK PD++ ++   + S  A      +DDE+VDETGVE KDI+LVMTQAGVSR KAV
Sbjct:   134 AAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKDIDLVMTQAGVSRPKAV 193

Query:   186 KALKAADGDIVSAIMELT 203
             KALK ++GDIVSAIMELT
Sbjct:   194 KALKESNGDIVSAIMELT 211

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2206975 NACA5 "AT1G33040" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 97/158 (61%), Positives = 122/158 (77%)

Query:    53 DGEAGGXXXXXXXXXXXXX-AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTD 111
             +GE G               A+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP  +
Sbjct:    51 EGEGGNENAKQSRSEKKSRKAVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAE 110

Query:   112 TYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSA-MA-----QDDEEVDETGV 165
             TYVIFGEAK++DLSSQLQTQAA++FK PD++ ++    S A MA     +D+++VD+TGV
Sbjct:   111 TYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGV 170

Query:   166 EPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203
             E +DI+LVMTQAGVS+AKAV ALKA DGDIVSAIMELT
Sbjct:   171 EARDIDLVMTQAGVSKAKAVSALKANDGDIVSAIMELT 208

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0086904 Nacalpha "Nascent polypeptide associated complex protein alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 86/136 (63%), Positives = 109/136 (80%)

Query:    73 MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQA 132
             MLKLG+K I GV+RVT++KSKNILFVI+ PDV+K+P +DTY++FGEAKIEDLS Q Q  A
Sbjct:    80 MLKLGLKQIQGVNRVTIRKSKNILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAA 139

Query:   133 AEQFKAPDLSHV---VSKPESSA-MAQDDEE-VDETGVEPKDIELVMTQAGVSRAKAVKA 187
             AE+FKAP+ +     V    S A +A++DEE VD+TGV+ KDIELV+TQA  +RAKA+KA
Sbjct:   140 AEKFKAPEAAGAADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIKA 199

Query:   188 LKAADGDIVSAIMELT 203
             LK  + DIV+AIMELT
Sbjct:   200 LKNNNNDIVNAIMELT 215

GO:0048477 "oogenesis" evidence=IMP

GO:0005854 "nascent polypeptide-associated complex" evidence=ISS;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q5E9A1 NACA "Nascent polypeptide-associated complex subunit alpha" [Bos taurus (taxid:9913)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 84/136 (61%), Positives = 108/136 (79%)

Query:    72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 131
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q  
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   132 AAEQFKAPD--LSHVVSKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVSRAKAVKA 187
             AAE+FK     +S++    ++  + ++  +EEVDETGVE KDIELVM+QA VSRAKAV+A
Sbjct:   139 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 198

Query:   188 LKAADGDIVSAIMELT 203
             LK    DIV+AIMELT
Sbjct:   199 LKNNSNDIVNAIMELT 214

GO:0005634 "nucleus" evidence=ISS

GO:0017025 "TBP-class protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q13765 NACA "Nascent polypeptide-associated complex subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 84/136 (61%), Positives = 108/136 (79%)

Query:    72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 131
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q  
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   132 AAEQFKAPD--LSHVVSKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVSRAKAVKA 187
             AAE+FK     +S++    ++  + ++  +EEVDETGVE KDIELVM+QA VSRAKAV+A
Sbjct:   139 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 198

Query:   188 LKAADGDIVSAIMELT 203
             LK    DIV+AIMELT
Sbjct:   199 LKNNSNDIVNAIMELT 214

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005854 "nascent polypeptide-associated complex" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003231 "cardiac ventricle development" evidence=ISS

GO:0010664 "negative regulation of striated muscle cell apoptotic process" evidence=ISS

GO:0043403 "skeletal muscle tissue regeneration" evidence=ISS

GO:0048633 "positive regulation of skeletal muscle tissue growth" evidence=ISS

GO:0048742 "regulation of skeletal muscle fiber development" evidence=ISS

GO:0061384 "heart trabecula morphogenesis" evidence=ISS

GO:1901227 "negative regulation of transcription from RNA polymerase II promoter involved in heart development" evidence=ISS

GO:1901228 "positive regulation of transcription from RNA polymerase II promoter involved in heart development" evidence=ISS

GO:2000138 "positive regulation of cell proliferation involved in heart morphogenesis" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0017025 "TBP-class protein binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

MGI|MGI:106095 Naca "nascent polypeptide-associated complex alpha polypeptide" [Mus musculus (taxid:10090)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 84/136 (61%), Positives = 108/136 (79%)

Query:    72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 131
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q  
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   132 AAEQFKAPD--LSHVVSKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVSRAKAVKA 187
             AAE+FK     +S++    ++  + ++  +EEVDETGVE KDIELVM+QA VSRAKAV+A
Sbjct:   139 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 198

Query:   188 LKAADGDIVSAIMELT 203
             LK    DIV+AIMELT
Sbjct:   199 LKNNSNDIVNAIMELT 214

GO:0003677 "DNA binding" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=IDA

UNIPROTKB|H9KYU8 NACA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 82/135 (60%), Positives = 106/135 (78%)

Query:    72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 131
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q  
Sbjct:    56 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 115

Query:   132 AAEQFKAPD--LSHVVSKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVSRAKAVKA 187
             AAE+FK     +S++    ++  + ++  +EEVDETGVE KDIELVM+QA VSRAKAV+A
Sbjct:   116 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 175

Query:   188 LKAADGDIVSAIMEL 202
             LK    DIV+AIM L
Sbjct:   176 LKNNSNDIVNAIMAL 190

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LHG9	NACA1_ARATH	No assigned EC number	0.7761	0.9656	0.9704	yes	no
Q94518	NACA_DROME	No assigned EC number	0.6133	0.7107	0.6682	yes	no
Q8JIU7	NACA_DANRE	No assigned EC number	0.6193	0.7401	0.7023	yes	no
Q5R9I9	NACA_PONAB	No assigned EC number	0.5641	0.7352	0.6976	yes	no
Q13765	NACA_HUMAN	No assigned EC number	0.6193	0.7401	0.7023	yes	no
Q8AWF2	NACA_ORENI	No assigned EC number	0.6322	0.7401	0.7023	yes	no
Q9M612	NACA_PINTA	No assigned EC number	0.7602	0.9215	0.9170	N/A	no
A2R4V1	NACA_ASPNC	No assigned EC number	0.5031	0.6960	0.7029	yes	no
Q5AYK0	NACA_EMENI	No assigned EC number	0.4509	0.8578	0.8620	yes	no
Q2U955	NACA_ASPOR	No assigned EC number	0.4659	0.8529	0.8613	yes	no
Q6ICZ8	NACA3_ARATH	No assigned EC number	0.7298	0.9656	0.9656	no	no
Q68F90	NACA_XENTR	No assigned EC number	0.6193	0.7401	0.7056	yes	no
Q61UX1	NACA_CAEBR	No assigned EC number	0.5300	0.8088	0.8375	N/A	no
Q60817	NACA_MOUSE	No assigned EC number	0.6193	0.7401	0.7023	yes	no
Q4I2J8	NACA_GIBZE	No assigned EC number	0.4627	0.8235	0.8038	yes	no
Q5E9A1	NACA_BOVIN	No assigned EC number	0.6193	0.7401	0.7023	yes	no
Q86S66	NACA_CAEEL	No assigned EC number	0.5245	0.8186	0.8477	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
pfam01849	50	pfam01849, NAC, NAC domain	3e-17
COG1308	122	COG1308, EGD2, Transcription factor homologous to	3e-13
PRK06369	115	PRK06369, nac, nascent polypeptide-associated comp	3e-09
pfam02724	583	pfam02724, CDC45, CDC45-like protein	5e-04
pfam02724	583	pfam02724, CDC45, CDC45-like protein	5e-04
PLN03142	1033	PLN03142, PLN03142, Probable chromatin-remodeling	9e-04
pfam06524	314	pfam06524, NOA36, NOA36 protein	0.002
TIGR00264	116	TIGR00264, TIGR00264, alpha-NAC-related protein	0.003
pfam00627	37	pfam00627, UBA, UBA/TS-N domain	0.004

>gnl|CDD|202009 pfam01849, NAC, NAC domain

 Score = 71.8 bits (177), Expect = 3e-17
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 75  KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIED 123
           KLG+KPI GV  VT++K    + V + P V KSP ++TYV+FGEAK +D
Sbjct: 2   KLGLKPIEGVEEVTIRKKDGKVLVFNNPKVQKSPGSNTYVVFGEAKEKD 50

Length = 50

>gnl|CDD|224227 COG1308, EGD2, Transcription factor homologous to NACalpha-BTF3 [Transcription]

 Score = 63.2 bits (154), Expect = 3e-13
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 32/141 (22%)

Query: 67  KKSRKAMLKLG--MKPIPGVSRVTVKKSKNILFVISKPDVF--KSPTTDTYVIFGEAKIE 122
           +K +K M ++G  ++ + GV RV +K       VI  P V   K+    TY I G+   +
Sbjct: 9   RKLKKLMKQMGIDVEELDGVERVIIKLKDTEY-VIENPQVTVMKAMGQKTYQISGDPSAK 67

Query: 123 DLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRA 182
           +                     V KPE       ++ VDE+ +  +DI+LVM QAGVSR 
Sbjct: 68  E--------------------AVKKPE-------EKTVDESDISEEDIKLVMEQAGVSRE 100

Query: 183 KAVKALKAADGDIVSAIMELT 203
           +A+KAL+ A GD+  AIM+LT
Sbjct: 101 EAIKALEEAGGDLAEAIMKLT 121

Length = 122

>gnl|CDD|235786 PRK06369, nac, nascent polypeptide-associated complex protein; Reviewed

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 158 EEVDETGVEPK--DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 204
           E+  E  VE    DIELV  Q GVS  +A KAL+ A+GD+  AI++L++
Sbjct: 66  EKEAEKEVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS 114

Length = 115

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 16/68 (23%), Positives = 33/68 (48%)

Query: 6   QEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRS 65
           +EEL           D +   +DDE+ DE+++E  + ++DE D+   D +     ++S  
Sbjct: 107 EEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLE 166

Query: 66  EKKSRKAM 73
            ++ R+  
Sbjct: 167 RRRRRREW 174

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 17/72 (23%), Positives = 33/72 (45%)

Query: 4   QTQEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQS 63
              EE L           D    +DD++E ++EDE+  K ED+ D+   D +    +++ 
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRER 163

Query: 64  RSEKKSRKAMLK 75
             E++ R+   +
Sbjct: 164 SLERRRRRREWE 175

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional

 Score = 39.4 bits (92), Expect = 9e-04
 Identities = 18/71 (25%), Positives = 37/71 (52%)

Query: 6  QEELLASLLEQQKIDDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGGRSKQSRS 65
          +EE + +   +++ +++   V      D D+DE   +DEDE +E   + E+  +++ S+ 
Sbjct: 1  EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKR 60

Query: 66 EKKSRKAMLKL 76
          EK   K + K 
Sbjct: 61 EKARLKELKKQ 71

Length = 1033

>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 20  DDDKPVVEDDEDEDEDEDEDDEKDEDEADEGHRDGEAGG 58
           DDD+    +D DE+ED D+DD +D D+ +  H D +   
Sbjct: 274 DDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDN 312

This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown. Length = 314

>gnl|CDD|232898 TIGR00264, TIGR00264, alpha-NAC-related protein

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202
           DIELVM Q  VS+ +A +AL+   GD+  AIM+L
Sbjct: 81  DIELVMKQCNVSKEEARRALEECGGDLAEAIMKL 114

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator [Unknown function, General]. Length = 116

>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain

 Score = 33.6 bits (78), Expect = 0.004
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 165 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202
           ++ + I+ +    G SR +A KAL+A +G++  A+  L
Sbjct: 1   IDEELIKQLREM-GFSREEAKKALRATNGNVERAVEYL 37

This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin and the ubiquitination pathway. The structure of the UBA domain consists of a compact three helix bundle. This domain is found at the N terminus of EF-TS hence the name TS-N. The structure of EF-TS is known and this domain is implicated in its interaction with EF-TU. The domain has been found in non EF-TS proteins such as alpha-NAC and MJ0280. Length = 37

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG2239	209	consensus Transcription factor containing NAC and	100.0
PRK06369	115	nac nascent polypeptide-associated complex protein	100.0
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	99.98
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	99.97
PF01849	58	NAC: NAC domain; InterPro: IPR002715 Nascent polyp	99.84
KOG2240	162	consensus RNA polymerase II general transcription	98.74
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	97.65
KOG3450	119	consensus Huntingtin interacting protein HYPK [Gen	97.55
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	95.49
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	95.06
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	94.79
COG4008	153	Predicted metal-binding transcription factor [Tran	86.01
COG2103	298	Predicted sugar phosphate isomerase [General funct	84.2
PRK05441	299	murQ N-acetylmuramic acid-6-phosphate etherase; Re	82.4

>KOG2239 consensus Transcription factor containing NAC and TS-N domains [Transcription]

Probab=100.00  E-value=2.5e-53  Score=359.62  Aligned_cols=150  Identities=67%  Similarity=0.924  Sum_probs=135.4

Q ss_pred             CCCCCCcCCcCHHHHHHHHHHcCCcccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecchhhHHHHHHHH
Q 028761           55 EAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAE  134 (204)
Q Consensus        55 ~~~~~~k~sr~eKK~rk~mkKLGlk~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed~~~q~q~~aae  134 (204)
                      .+.+++||||++||.||+|.||||++|+||+|||||+++|++|+|++|+|||+|+++||+|||+++++++++|+|.+|++
T Consensus        55 ~~~~~akqsrsekKark~m~KLGlk~v~gV~RVti~ksKNilfvI~kPdVyKsp~sdtYiiFGeakiedls~q~q~~aae  134 (209)
T KOG2239|consen   55 EPVAKAKQSRSEKKARKAMLKLGLKQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIIFGEAKIEDLSQQAQMQAAE  134 (209)
T ss_pred             cchhhhhcchHHHHHHHHHHhcCCccccceeEEEEEecccEEEEecCCceeccCCCceEEEecccccchhHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCcccCCC----Ccc-ccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028761          135 QFKAPDLSHVVSKP----ESS-AMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       135 ~~~~~~~~~~~~~~----~~~-~~~~~~eevd~~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt~  204 (204)
                      +|+.+..++.....    .++ .+.+++++||++||+.+||+|||+|+||||++||||||+|+||||||||+||+
T Consensus       135 ~fk~~~~~~~~~~~~~~~~~~~~ee~dEeeVD~tgve~kDIeLVmsQanvSR~kAVkALk~~~~DiVnAIM~LT~  209 (209)
T KOG2239|consen  135 RFKVPQEAPGLIQEDTSATPPAQEESDEEEVDETGVEAKDIELVMSQANVSRAKAVKALKNNNNDIVNAIMELTK  209 (209)
T ss_pred             hccCCccccccccccccCCCccccccchhccCcccCchhhHHHHHHHhhhhHHHHHHHHHhccchHHHHHHHhhC
Confidence            99987655543221    122 22355667999999999999999999999999999999999999999999985

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=100.00  E-value=1.5e-37  Score=245.06  Aligned_cols=106  Identities=31%  Similarity=0.501  Sum_probs=97.5

Q ss_pred             cCHHHHHHHHHHcCCc--ccCCceEEEEEecCceEEEEcCCeEE--eeCCCcEEEEeccceecchhhHHHHHHHHHhcCC
Q 028761           64 RSEKKSRKAMLKLGMK--PIPGVSRVTVKKSKNILFVISKPDVF--KSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAP  139 (204)
Q Consensus        64 r~eKK~rk~mkKLGlk--~v~gV~rVtI~k~~~~~fvI~~P~V~--ks~gs~tYvVfGeak~ed~~~q~q~~aae~~~~~  139 (204)
                      -||||+|+||+||||+  +| ||.||+|++.+ ..|||++|+||  +++|++||||||+++.++++++.           
T Consensus         5 ~nprk~rkmmkkmGik~e~i-~v~~V~Ir~~~-~~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~-----------   71 (115)
T PRK06369          5 MNPRKMKQMMKQMGIDVEEL-DVEEVIIRLKD-KEIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEK-----------   71 (115)
T ss_pred             CCHHHHHHHHHHcCCcchhc-CeEEEEEEeCC-EEEEEcCCeEEEEecCCCcEEEEEeccEEeeccccc-----------
Confidence            4689999999999999  99 99999999987 89999999999  78999999999999998764420           


Q ss_pred             CCCcccCCCCccccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028761          140 DLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~eevd~~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt~  204 (204)
                                            +++|+++||+|||+||||||++|++||++||||||+|||.|+.
T Consensus        72 ----------------------~~~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~  114 (115)
T PRK06369         72 ----------------------EVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS  114 (115)
T ss_pred             ----------------------cCCCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence                                  3589999999999999999999999999999999999999973

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=99.98  E-value=8.8e-33  Score=219.33  Aligned_cols=113  Identities=38%  Similarity=0.613  Sum_probs=95.2

Q ss_pred             cCHHHHHHHHHHcCCc--ccCCceEEEEEecCceEEEEcCCeEEe--eCCCcEEEEeccceecchhhHHHHHHHHHhcCC
Q 028761           64 RSEKKSRKAMLKLGMK--PIPGVSRVTVKKSKNILFVISKPDVFK--SPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAP  139 (204)
Q Consensus        64 r~eKK~rk~mkKLGlk--~v~gV~rVtI~k~~~~~fvI~~P~V~k--s~gs~tYvVfGeak~ed~~~q~q~~aae~~~~~  139 (204)
                      -|+|+|+|+|++|||+  +|+||.||+|++.++. |+|++|.||.  ++|+.||+|.|.+..+.                
T Consensus         6 mnpr~l~k~mkqmGi~~eeld~v~~V~i~~kd~e-~vi~~P~V~~~~~~g~~~yqi~g~~~~~~----------------   68 (122)
T COG1308           6 MNPRKLKKLMKQMGIDVEELDGVERVIIKLKDTE-YVIENPQVTVMKAMGQKTYQISGDPSAKE----------------   68 (122)
T ss_pred             CCHHHHHHHHHHhCCCceeccCceEEEEEcCCce-EEeeCCcEEeehhcchhHHHHhcchhhhc----------------
Confidence            5689999999999955  8999999999998875 9999999976  58899999999964100                


Q ss_pred             CCCcccCCCCccccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028761          140 DLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~eevd~~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt~  204 (204)
                                 .....++..+++..|+++||+|||+||||||++|||||+++|||||+|||+||.
T Consensus        69 -----------~~~~~ee~~~d~~~i~eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L~~  122 (122)
T COG1308          69 -----------AVKKPEEKTVDESDISEEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKLTE  122 (122)
T ss_pred             -----------ccccchhcccccCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHhcC
Confidence                       000112334667789999999999999999999999999999999999999984

>TIGR00264 alpha-NAC-related protein

Probab=99.97  E-value=1.7e-31  Score=210.72  Aligned_cols=101  Identities=34%  Similarity=0.530  Sum_probs=87.9

Q ss_pred             HHHHHHHHHcCCc--ccCCceEEEEEecCceEEEEcCCeE--EeeCCCcEEEEeccceecchhhHHHHHHHHHhcCCCCC
Q 028761           67 KKSRKAMLKLGMK--PIPGVSRVTVKKSKNILFVISKPDV--FKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLS  142 (204)
Q Consensus        67 KK~rk~mkKLGlk--~v~gV~rVtI~k~~~~~fvI~~P~V--~ks~gs~tYvVfGeak~ed~~~q~q~~aae~~~~~~~~  142 (204)
                      |+||+||+||||+  ++. |.+|+|++.++ .++|++|.|  |+++|+.||||||+++.+++..                
T Consensus        12 ~~mkkmMk~MGi~~~eid-V~~ViIk~~~k-~ivf~~p~V~~m~~~G~~tYqI~G~~~~~~~~~----------------   73 (116)
T TIGR00264        12 KQMQKMMKQMGMEMEDLD-VEEVIIVFDDE-EWIFENPKVQVMDILGVKTYQITGKPKKEKVEE----------------   73 (116)
T ss_pred             HHHHHHHHHcCCCccccc-cEEEEEEeCCc-eEEEecCeeEEEecCCcEEEEEecccEEeeccc----------------
Confidence            3999999999999  476 99999999764 577999988  6789999999999998754310                


Q ss_pred             cccCCCCccccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028761          143 HVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       143 ~~~~~~~~~~~~~~~eevd~~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt~  204 (204)
                                         +.+|+++||+|||+||||||++|++||+++|||||+|||.|+.
T Consensus        74 -------------------~~~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L~~  116 (116)
T TIGR00264        74 -------------------EEEITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMKLEE  116 (116)
T ss_pred             -------------------ccCCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHhhC
Confidence                               0259999999999999999999999999999999999999973

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation

Probab=99.84  E-value=3.5e-21  Score=134.59  Aligned_cols=58  Identities=52%  Similarity=0.886  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHcCCcccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecc
Q 028761           66 EKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIED  123 (204)
Q Consensus        66 eKK~rk~mkKLGlk~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed  123 (204)
                      |||+|++|+||||++|+||.||+|++.+|.+|+|++|+||++++++||+|||++++++
T Consensus         1 ekk~~~~l~klgl~~i~~i~eV~i~~~dg~~~~~~~P~V~~~~~~~tyvV~G~~~~~~   58 (58)
T PF01849_consen    1 EKKLQKMLKKLGLKEIPGIEEVTIRKDDGTVFVFNNPEVQKSPGSNTYVVFGEAEEED   58 (58)
T ss_dssp             -------GHHCT-EEETTEEEEEEEETTTEEEEEESEEEEEETTCCEEEEESEEEEEE
T ss_pred             CHHHHHHHHHcCCcccCCcEEEEEEECCceEEEEcCCeEEEcCCCCEEEEEeeeEEcC
Confidence            6999999999999999999999999999999999999999999999999999998764

The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.

>KOG2240 consensus RNA polymerase II general transcription factor BTF3 and related proteins [Transcription]

Probab=98.74  E-value=7e-09  Score=86.54  Aligned_cols=64  Identities=28%  Similarity=0.512  Sum_probs=59.5

Q ss_pred             CcCHHHHHHHHHHcCCcccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecchhh
Q 028761           63 SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS  126 (204)
Q Consensus        63 sr~eKK~rk~mkKLGlk~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed~~~  126 (204)
                      ...+||++.-|+||++.+|+||.+|.|++.++.+++|++|.|+++...|||.|+|.++.+.++.
T Consensus        38 ~~ddkKlqs~lkkl~v~~i~~i~evn~~k~~g~Vihf~~~~vqasl~~nTf~ItG~~~~k~l~E  101 (162)
T KOG2240|consen   38 TADDKKLQSSLKKLGVNNIPGIEEVNMFKNDGTVIHFNNPKVQASLAANTFTITGHAETKQLTE  101 (162)
T ss_pred             CcccchhhhhhhhhccccccchhHhhhccccceeEecCCccccccccCCeEEEecCCcccchhh
Confidence            4568999999999999999999999999999999999999999999999999999998876543

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=97.65  E-value=5.2e-05  Score=48.13  Aligned_cols=37  Identities=30%  Similarity=0.524  Sum_probs=31.9

Q ss_pred             CCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028761          165 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       165 v~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      |+++.|..+++. |+|++.|++||+.++||+-.||.-|
T Consensus         1 i~~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    1 IDEEKVQQLMEM-GFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             SHHHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             CCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            356788999999 9999999999999999999998754

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>KOG3450 consensus Huntingtin interacting protein HYPK [General function prediction only]

Probab=97.55  E-value=4.8e-05  Score=60.20  Aligned_cols=42  Identities=33%  Similarity=0.577  Sum_probs=39.1

Q ss_pred             CCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 028761          163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  204 (204)
Q Consensus       163 ~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt~  204 (204)
                      ..|.++||+|+|...-+++.-|.+-|++++||+|.|+-.|++
T Consensus        77 V~IkkeDlelImnELei~k~~aer~LrE~~Gdvv~Alral~s  118 (119)
T KOG3450|consen   77 VTIKKEDLELIMNELEISKAAAERSLREHMGDVVEALRALTS  118 (119)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc
Confidence            358899999999999999999999999999999999988864

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=95.49  E-value=0.02  Score=37.39  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=27.6

Q ss_pred             ccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028761          168 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       168 eDIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      +-|.-.|+-|||+++.|+..|+.+++||-.||=
T Consensus         2 e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~   34 (43)
T PF14555_consen    2 EKIAQFMSITGADEDVAIQYLEANNWDLEAAVN   34 (43)
T ss_dssp             HHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHH
Confidence            357788999999999999999999999988873

>cd00194 UBA Ubiquitin Associated domain

Probab=95.06  E-value=0.039  Score=34.47  Aligned_cols=32  Identities=34%  Similarity=0.521  Sum_probs=26.0

Q ss_pred             HHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028761          170 IELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       170 IeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      |..++ ..|.+++.|+.||+.++||+-.|+--|
T Consensus         5 v~~L~-~mGf~~~~~~~AL~~~~~d~~~A~~~L   36 (38)
T cd00194           5 LEQLL-EMGFSREEARKALRATNNNVERAVEWL   36 (38)
T ss_pred             HHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            44444 469999999999999999999987544

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=94.79  E-value=0.051  Score=33.78  Aligned_cols=28  Identities=43%  Similarity=0.580  Sum_probs=23.7

Q ss_pred             HhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028761          175 TQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       175 ~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      ...|.+++.|+.||+.++||+-.|+--|
T Consensus         9 ~~mGf~~~~a~~aL~~~~~d~~~A~~~L   36 (37)
T smart00165        9 LEMGFSREEALKALRAANGNVERAAEYL   36 (37)
T ss_pred             HHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            3459999999999999999998887543

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>COG4008 Predicted metal-binding transcription factor [Transcription]

Probab=86.01  E-value=1.1  Score=36.98  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=28.7

Q ss_pred             CCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028761          163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  200 (204)
Q Consensus       163 ~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM  200 (204)
                      ..++.+-++.+..-. ||.++|++||.+++ |+..|+-
T Consensus       111 s~~~~e~v~v~a~a~-v~~eeAr~aleeag-Dl~~A~k  146 (153)
T COG4008         111 SEPPVEEVEVLADAF-VTPEEAREALEEAG-DLRTAMK  146 (153)
T ss_pred             CCCcHHHHHHHHHhc-CCHHHHHHHHHHcC-CHHHHHH
Confidence            445667777776655 99999999999996 9999853

>COG2103 Predicted sugar phosphate isomerase [General function prediction only]

Probab=84.20  E-value=1.3  Score=40.47  Aligned_cols=39  Identities=28%  Similarity=0.439  Sum_probs=33.8

Q ss_pred             CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028761          164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      .+-+.-+..||+-|||+|++|..+|++++|++=-||+-+
T Consensus       231 KL~dRa~RIv~~aT~~~~~~A~~~L~~~~~~vK~AIvm~  269 (298)
T COG2103         231 KLRDRAVRIVMEATGCSAEEAEALLEEAGGNVKLAIVML  269 (298)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccHhHHHHH
Confidence            355677899999999999999999999999998887643

>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=82.40  E-value=1.7  Score=39.13  Aligned_cols=38  Identities=39%  Similarity=0.583  Sum_probs=30.7

Q ss_pred             CCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028761          165 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       165 v~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      +-..=+.+||+-+|||+++|.++|..++|.+=-||+-+
T Consensus       234 l~~ra~~i~~~~~~~~~~~a~~~l~~~~~~vk~a~~~~  271 (299)
T PRK05441        234 LVDRAVRIVMEATGVSREEAEAALEAADGSVKLAIVMI  271 (299)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHhCCCcHHHHHHH
Confidence            34566778899999999999999999999987777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
3mcb_A	54	Crystal Structure Of Nac Domains Of Human Nascent P		6e-19
3lkx_B	54	Human Nac Dimerization Domain Length = 54		3e-18
3mce_A	61	Crystal Structure Of The Nac Domain Of Alpha Subuni		1e-17

>pdb|3MCB|A Chain A, Crystal Structure Of Nac Domains Of Human Nascent Polypeptide- Associated Complex (Nac) Length = 54

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 50/54 (92%)
Query: 72  AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 125
           AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS
Sbjct: 1   AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54

>pdb|3LKX|B Chain B, Human Nac Dimerization Domain Length = 54

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 48/53 (90%)
Query: 77  GMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQ 129
           G++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q
Sbjct: 2   GLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQ 54

>pdb|3MCE|A Chain A, Crystal Structure Of The Nac Domain Of Alpha Subunit Of Nascent Polypeptide-Associated Complex(Nac) Length = 61

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 48/51 (94%)
Query: 75  KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 125
           KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS
Sbjct: 10  KLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
3mcb_A	54	Nascent polypeptide-associated complex subunit Al;	1e-27
3mce_A	61	Nascent polypeptide-associated complex subunit Al;	5e-27
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	1e-22

>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B Length = 54

 Score = 98.3 bits (245), Expect = 1e-27
 Identities = 39/54 (72%), Positives = 50/54 (92%)

Query: 72  AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 125
           AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS
Sbjct: 1   AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54

>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens} Length = 61

 Score = 96.8 bits (241), Expect = 5e-27
 Identities = 37/53 (69%), Positives = 48/53 (90%)

Query: 73  MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 125
             KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS
Sbjct: 8   FSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 60

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} Length = 102

 Score = 86.9 bits (215), Expect = 1e-22
 Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 36/136 (26%)

Query: 69  SRKAMLKLGMKPIPGVSRVTVK-KSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQ 127
           S    + + MK + GV  V +K K K I+    K +V +     TY + G+A+   L ++
Sbjct: 2   SHMKQMGMDMKDLRGVEEVVIKLKRKEIIIKNPKVNVMEFMGQKTYQVTGKARERSLEAE 61

Query: 128 LQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKA 187
           ++                                   +   DIELVM Q G SR  A +A
Sbjct: 62  ME-----------------------------------IPEDDIELVMNQTGASREDATRA 86

Query: 188 LKAADGDIVSAIMELT 203
           L+   GD+  AIM L+
Sbjct: 87  LQETGGDLAEAIMRLS 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	93.19
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	91.63
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	88.95
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	87.68
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	87.64
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	85.5
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	84.3
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	84.29

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.19  E-value=0.055  Score=29.61  Aligned_cols=40  Identities=25%  Similarity=0.332  Sum_probs=36.4

Q ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             9996328788986189999999999982993999885012
Q 028761          164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT  203 (204)
Q Consensus       164 gi~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt  203 (204)
                      .|+.++|+-.=.+||++--...+||.+++||+-.||--|.
T Consensus         2 ~is~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~Lr   41 (54)
T d1efub3           2 EITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMR   41 (54)
T ss_dssp             CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             4789999999998698799999999983899999999999

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.63  E-value=0.11  Score=27.80  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=31.6

Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             632878898618999999999998299399988501
Q 028761          167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      .+=|+.||+=||||.+.++-||-.+++|+-.||=-|
T Consensus        33 ~~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~l   68 (91)
T d1wj7a1          33 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVL   68 (91)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             999999999967889999999851785399999999

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.95  E-value=0.23  Score=25.88  Aligned_cols=39  Identities=28%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             CCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             8999632878898618999999999998299399988501
Q 028761          163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       163 ~gi~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      ..++++-|..+|+ -|.+|..|++||+.++|++=.||--|
T Consensus        26 ~~~d~~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~Av~~L   64 (73)
T d1wiva_          26 SDIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATDWV   64 (73)
T ss_dssp             CSSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHH-CCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             9989999999993-69999999999999299999999999

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=87.68  E-value=0.38  Score=24.59  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             6328788986189999999999982993999885012
Q 028761          167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT  203 (204)
Q Consensus       167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt  203 (204)
                      .+-|+=.=++||++--...+||.++||||-.||--|.
T Consensus         5 ~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~Lr   41 (56)
T d1xb2b1           5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLH   41 (56)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999999998698899999999983899999999999

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.64  E-value=0.34  Score=24.93  Aligned_cols=35  Identities=23%  Similarity=0.180  Sum_probs=29.5

Q ss_pred             CCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             32878898618999999999998299399988501
Q 028761          168 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       168 eDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      +.|+-.=.+||++--...+||.++||||-.||--|
T Consensus         4 elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~L   38 (52)
T d1aipc1           4 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLL   38 (52)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             89999999869879999999998399999999999

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.50  E-value=0.43  Score=24.29  Aligned_cols=39  Identities=23%  Similarity=0.398  Sum_probs=30.8

Q ss_pred             CCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             8999632878898618999999999998299399988501
Q 028761          163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       163 ~gi~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      ++++++-|.-+|+ -|.+|..|++||+.++|++-.|+--|
T Consensus         6 ~~~d~~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~~wL   44 (63)
T d1wjia_           6 SGVDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNVL   44 (63)
T ss_dssp             CSSCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             7569999999999-69999999999999198999999999

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=84.30  E-value=0.39  Score=24.55  Aligned_cols=27  Identities=26%  Similarity=0.268  Sum_probs=22.4

Q ss_pred             HHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             618999999999998299399988501
Q 028761          176 QAGVSRAKAVKALKAADGDIVSAIMEL  202 (204)
Q Consensus       176 QagvSr~kAvkALke~~GDIV~AIM~L  202 (204)
                      --|.+++.|++||+++|+|+-.|.=-|
T Consensus        13 ~MGF~e~~A~~AL~k~~wnleaAtN~L   39 (43)
T d2g3qa1          13 GMGFTEEEAHNALEKCNWDLEAATNFL   39 (43)
T ss_dssp             TTTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             558788999999998589799999998

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.29  E-value=0.65  Score=23.21  Aligned_cols=37  Identities=30%  Similarity=0.440  Sum_probs=29.3

Q ss_pred             CCCCCCCHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHH
Q ss_conf             8999632878898618999999999998299-3999885
Q 028761          163 TGVEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAIM  200 (204)
Q Consensus       163 ~gi~eeDIeLVm~QagvSr~kAvkALke~~G-DIV~AIM  200 (204)
                      .+++++-|.-++ .-|.||+.|++||+.++| ++=.|+-
T Consensus         6 s~~d~~~l~~L~-~MGF~~~~a~~AL~~t~n~~~e~A~~   43 (64)
T d1whca_           6 SGAELTALESLI-EMGFPRGRAEKALALTGNQGIEAAMD   43 (64)
T ss_dssp             CCCCCCHHHHHH-TTTCCHHHHHHHHHHHTSCCHHHHHH
T ss_pred             CCCCHHHHHHHH-HCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf             755999999999-95999999999999948999999999