Citrus Sinensis ID: 028776
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 204 | 2.2.26 [Sep-21-2011] | |||||||
| Q63055 | 201 | ADP-ribosylation factor-r | yes | no | 0.916 | 0.930 | 0.447 | 3e-44 | |
| Q8BXL7 | 201 | ADP-ribosylation factor-r | yes | no | 0.916 | 0.930 | 0.447 | 3e-44 | |
| Q32LJ2 | 201 | ADP-ribosylation factor-r | yes | no | 0.916 | 0.930 | 0.442 | 3e-44 | |
| Q5R579 | 201 | ADP-ribosylation factor-r | yes | no | 0.916 | 0.930 | 0.442 | 4e-44 | |
| Q13795 | 201 | ADP-ribosylation factor-r | yes | no | 0.916 | 0.930 | 0.442 | 4e-44 | |
| Q02804 | 198 | ADP-ribosylation factor-l | yes | no | 0.916 | 0.944 | 0.364 | 1e-33 | |
| P38116 | 183 | ADP-ribosylation factor-l | no | no | 0.862 | 0.961 | 0.381 | 3e-29 | |
| P61210 | 182 | ADP-ribosylation factor 1 | N/A | no | 0.882 | 0.989 | 0.340 | 5e-29 | |
| P61209 | 182 | ADP-ribosylation factor 1 | no | no | 0.882 | 0.989 | 0.340 | 5e-29 | |
| P51643 | 181 | ADP-ribosylation factor 1 | N/A | no | 0.877 | 0.988 | 0.336 | 8e-29 |
| >sp|Q63055|ARFRP_RAT ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 130/190 (68%), Gaps = 3/190 (1%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+ +I TVGLN
Sbjct: 1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
IG ++V ++L+FWDLGGQ L+S+W+KYY E H V++VID+ R +SK A EKV+
Sbjct: 61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVS 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEAVSGYDGFGIKESV 177
+E L G P+L+LANKQD+ +S ++ + D K+ R C+ +A S G G++E +
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGI 180
Query: 178 EWLVEVMERS 187
EW+V+ + R+
Sbjct: 181 EWMVKCVVRN 190
|
Possibly involved in plasma membrane-related signaling events. Rattus norvegicus (taxid: 10116) |
| >sp|Q8BXL7|ARFRP_MOUSE ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 130/190 (68%), Gaps = 3/190 (1%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+ +I TVGLN
Sbjct: 1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
IG ++V ++L+FWDLGGQ L+S+W+KYY E H V++VID+ R +SK A EKV+
Sbjct: 61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVS 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEAVSGYDGFGIKESV 177
+E L G P+L+LANKQD+ +S ++ + D K+ R C+ +A S G G++E +
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGI 180
Query: 178 EWLVEVMERS 187
EW+V+ + R+
Sbjct: 181 EWMVKCVVRN 190
|
Possibly involved in plasma membrane-related signaling events. Mus musculus (taxid: 10090) |
| >sp|Q32LJ2|ARFRP_BOVIN ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 128/190 (67%), Gaps = 3/190 (1%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L GL+KY+F K E+ VLILG+D AGKTT LE+ K+ ++ N +G+ +I TVGLN
Sbjct: 1 MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
IG ++V ++L+FWDLGGQ L+S+W+KYY E H V++VID+ R +SK A EK++
Sbjct: 61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVT 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEAVSGYDGFGIKESV 177
+E L G P+L+LANKQD+ +S ++ K+ R C+ +A S G G++E +
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCASKIGRRDCLTQACSALTGKGVREGI 180
Query: 178 EWLVEVMERS 187
EW+V+ + R+
Sbjct: 181 EWMVKCVVRN 190
|
Possibly involved in plasma membrane-related signaling events. Bos taurus (taxid: 9913) |
| >sp|Q5R579|ARFRP_PONAB ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 128/190 (67%), Gaps = 3/190 (1%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+ +I TVGLN
Sbjct: 1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
IG ++V ++L+FWDLGGQ L+S+W+KYY E H V++VID+ R +SK A EKV+
Sbjct: 61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVT 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEAVSGYDGFGIKESV 177
+E L G P+L+LANKQD+ +S ++ K+ R C+ +A S G G++E +
Sbjct: 121 SEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTGKGVREGI 180
Query: 178 EWLVEVMERS 187
EW+V+ + R+
Sbjct: 181 EWMVKCVVRN 190
|
Possibly involved in plasma membrane-related signaling events. Pongo abelii (taxid: 9601) |
| >sp|Q13795|ARFRP_HUMAN ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 128/190 (67%), Gaps = 3/190 (1%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+ +I TVGLN
Sbjct: 1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
IG ++V ++L+FWDLGGQ L+S+W+KYY E H V++VID+ R +SK A EKV+
Sbjct: 61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVT 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEAVSGYDGFGIKESV 177
+E L G P+L+LANKQD+ +S ++ K+ R C+ +A S G G++E +
Sbjct: 121 SEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTGKGVREGI 180
Query: 178 EWLVEVMERS 187
EW+V+ + R+
Sbjct: 181 EWMVKCVVRN 190
|
Possibly involved in plasma membrane-related signaling events. Homo sapiens (taxid: 9606) |
| >sp|Q02804|ARL3_YEAST ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 122/195 (62%), Gaps = 8/195 (4%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
MF L GL+ K ++ +LILG+D AGKTT LE LK YS + ++I PTVG N+
Sbjct: 1 MFHLVKGLYNNWNKKEQYSILILGLDNAGKTTFLETLKKEYS-LAFKALEKIQPTVGQNV 59
Query: 61 GRIEVSNSKLV-FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
I V + +++ FWD+GGQ LRS+W +YY H ++F++D++ R ++ T L+ V+
Sbjct: 60 ATIPVDSKQILKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVM 119
Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA----VSGYDGFGIKE 175
+E+++G P+L+LANKQD D + ++ + K+ E + ++ +S G G+K+
Sbjct: 120 DEEIEGVPILMLANKQDRQDRMEVQDIKEVFN--KIAEHISARDSRVLPISALTGEGVKD 177
Query: 176 SVEWLVEVMERSKRT 190
++EW++ +ER+K++
Sbjct: 178 AIEWMIVRLERNKKS 192
|
Involved in the targeting of ARL1 to the Golgi. Can bind and hydrolyze GTP. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P38116|ARL1_YEAST ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARL1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 108/186 (58%), Gaps = 10/186 (5%)
Query: 3 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR 62
S+F LW + E +LILG+D AGKTT+L +L+ + + + PT+G N+
Sbjct: 7 SMFDKLWG---SNKELRILILGLDGAGKTTILYRLQ-----IGEVVTTK--PTIGFNVET 56
Query: 63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 122
+ N KL WDLGGQ +R W YY + AV+FV+D+ R + L +L+ E+
Sbjct: 57 LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE 116
Query: 123 LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
LQ A LL+ ANKQD P A+SA E+++ L+L +L +R A S G GI E ++WL++
Sbjct: 117 LQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLID 176
Query: 183 VMERSK 188
V++ +
Sbjct: 177 VIKEEQ 182
|
Recruits golgins such as IMH1 to the Golgi. Can bind and hydrolyze GTP. May be involved in trafficking events within the endosomal system. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 108/191 (56%), Gaps = 11/191 (5%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGL 58
M ++F L+K +F K E +L++G+D AGKTT+L KLK + + +PT+G
Sbjct: 1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGF 51
Query: 59 NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL 118
N+ +E N WD+GGQ +R +W Y++ ++FV+D+ R +++ L ++L
Sbjct: 52 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRML 111
Query: 119 RNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178
++L+ A LLI ANKQDLP+A++A E+ L L L R +A G G+ E ++
Sbjct: 112 AEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLD 171
Query: 179 WLVEVMERSKR 189
WL ++ + R
Sbjct: 172 WLSNQLKNANR 182
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Locusta migratoria (taxid: 7004) |
| >sp|P61209|ARF1_DROME ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=2 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 108/191 (56%), Gaps = 11/191 (5%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGL 58
M ++F L+K +F K E +L++G+D AGKTT+L KLK + + +PT+G
Sbjct: 1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGF 51
Query: 59 NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL 118
N+ +E N WD+GGQ +R +W Y++ ++FV+D+ R +++ L ++L
Sbjct: 52 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRML 111
Query: 119 RNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178
++L+ A LLI ANKQDLP+A++A E+ L L L R +A G G+ E ++
Sbjct: 112 AEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLD 171
Query: 179 WLVEVMERSKR 189
WL ++ + R
Sbjct: 172 WLSNQLKNANR 182
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Drosophila melanogaster (taxid: 7227) |
| >sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 106/190 (55%), Gaps = 11/190 (5%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGL 58
M ++F L+K +F K E +L++G+D AGKTT+L KLK + + +PT+G
Sbjct: 1 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGF 51
Query: 59 NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL 118
N+ +E N WD+GGQ +R +W Y++ ++FV+D+ R +++ L ++L
Sbjct: 52 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML 111
Query: 119 RNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178
++L+ A LL+ ANKQDLP+A++A E+ L L L R +A G G+ E ++
Sbjct: 112 AEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLD 171
Query: 179 WLVEVMERSK 188
WL + K
Sbjct: 172 WLSNQLRNQK 181
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Xenopus laevis (taxid: 8355) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 204 | ||||||
| 255539493 | 204 | ADP-ribosylation factor, putative [Ricin | 0.980 | 0.980 | 0.9 | 1e-102 | |
| 224120084 | 204 | predicted protein [Populus trichocarpa] | 0.980 | 0.980 | 0.9 | 1e-102 | |
| 356549001 | 204 | PREDICTED: ADP-ribosylation factor-relat | 0.975 | 0.975 | 0.879 | 1e-101 | |
| 449446037 | 205 | PREDICTED: ADP-ribosylation factor-relat | 0.980 | 0.975 | 0.875 | 1e-100 | |
| 449446039 | 202 | PREDICTED: ADP-ribosylation factor-relat | 0.970 | 0.980 | 0.883 | 1e-100 | |
| 224136948 | 204 | predicted protein [Populus trichocarpa] | 0.980 | 0.980 | 0.875 | 1e-99 | |
| 255646406 | 204 | unknown [Glycine max] | 0.975 | 0.975 | 0.864 | 6e-99 | |
| 359495822 | 205 | PREDICTED: ADP-ribosylation factor-relat | 0.985 | 0.980 | 0.845 | 4e-98 | |
| 217073166 | 205 | unknown [Medicago truncatula] gi|3884967 | 0.975 | 0.970 | 0.869 | 3e-97 | |
| 363807218 | 187 | uncharacterized protein LOC100785527 [Gl | 0.916 | 1.0 | 0.882 | 1e-95 |
| >gi|255539493|ref|XP_002510811.1| ADP-ribosylation factor, putative [Ricinus communis] gi|223549926|gb|EEF51413.1| ADP-ribosylation factor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/200 (90%), Positives = 193/200 (96%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
MFSLFYGLWKY+F+KTEFHVLILGIDKAGKTTLLEKLKS+YSN+EGLPPDRIVPTVGLNI
Sbjct: 1 MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLPPDRIVPTVGLNI 60
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
GRIEVS++KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA CPSRFEDSK+ALEKVLR+
Sbjct: 61 GRIEVSSTKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDATCPSRFEDSKSALEKVLRH 120
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
EDLQGAPLLILANKQDLPDA +A+E+ARYLDLKKLDERV MFEAVS YDG GI+ESVEWL
Sbjct: 121 EDLQGAPLLILANKQDLPDAATAEEIARYLDLKKLDERVYMFEAVSAYDGLGIRESVEWL 180
Query: 181 VEVMERSKRTEMLRARAGAS 200
VEVMERSKRTEMLR RAG +
Sbjct: 181 VEVMERSKRTEMLRVRAGIT 200
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120084|ref|XP_002318238.1| predicted protein [Populus trichocarpa] gi|118488882|gb|ABK96250.1| unknown [Populus trichocarpa x Populus deltoides] gi|222858911|gb|EEE96458.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/200 (90%), Positives = 194/200 (97%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
MFSLFYGLWKYIF+KTEFHVLILGIDKAGKTTLLEKLKSV+SN+EGLPPDRI+PTVGLNI
Sbjct: 1 MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSVHSNLEGLPPDRIIPTVGLNI 60
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV++VIDAACPSRFED+K+ALEKVLR+
Sbjct: 61 GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSRFEDAKSALEKVLRH 120
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
+DLQGAPLLILANKQDL DA SA+ELARYLDLKKLDERV +FEAVS YDG GIKESVEWL
Sbjct: 121 DDLQGAPLLILANKQDLTDAASAEELARYLDLKKLDERVYIFEAVSAYDGMGIKESVEWL 180
Query: 181 VEVMERSKRTEMLRARAGAS 200
VEVMERSKRTEMLRARAG +
Sbjct: 181 VEVMERSKRTEMLRARAGVT 200
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549001|ref|XP_003542887.1| PREDICTED: ADP-ribosylation factor-related protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/199 (87%), Positives = 192/199 (96%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
MFSLFYGLWKY+F+K E HVLILGIDKAGKTTLLEK+KSVYSN+EG+PPDRI+PTVGLNI
Sbjct: 1 MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSVYSNIEGIPPDRIIPTVGLNI 60
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV+FV+DA+CPSRFED+K+ALEKVLR+
Sbjct: 61 GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVVDASCPSRFEDAKSALEKVLRH 120
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
EDLQGAPLLILANKQD+P+AVSADEL +YLDLKKLDERV MFEAVS YDG GI+ES EWL
Sbjct: 121 EDLQGAPLLILANKQDIPEAVSADELPQYLDLKKLDERVFMFEAVSAYDGMGIRESAEWL 180
Query: 181 VEVMERSKRTEMLRARAGA 199
VEVMERSKRTEMLRARAGA
Sbjct: 181 VEVMERSKRTEMLRARAGA 199
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446037|ref|XP_004140778.1| PREDICTED: ADP-ribosylation factor-related protein 1-like isoform 1 [Cucumis sativus] gi|449520110|ref|XP_004167077.1| PREDICTED: ADP-ribosylation factor-related protein 1-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/200 (87%), Positives = 195/200 (97%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
MFSLFYGLWKY+F+KTEFHVLILGIDKAGKTTLLEKLKS+YSN+EGL PDRIVPTVGLNI
Sbjct: 1 MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLSPDRIVPTVGLNI 60
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
GR+EV N+KLVFWDLGGQPGLRSIWEKYYEEAHAV++VIDAACPS+FEDSK+ALEKVLR+
Sbjct: 61 GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
EDLQGAPLL+LANKQDLP+AVSA+EL+RYLDLKKLDERV MFEAVSGYDG GIK+SVEWL
Sbjct: 121 EDLQGAPLLVLANKQDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWL 180
Query: 181 VEVMERSKRTEMLRARAGAS 200
V++MERSKRTE+LRARAG +
Sbjct: 181 VDIMERSKRTEILRARAGGA 200
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446039|ref|XP_004140779.1| PREDICTED: ADP-ribosylation factor-related protein 1-like isoform 2 [Cucumis sativus] gi|449520112|ref|XP_004167078.1| PREDICTED: ADP-ribosylation factor-related protein 1-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/198 (88%), Positives = 194/198 (97%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
MFSLFYGLWKY+F+KTEFHVLILGIDKAGKTTLLEKLKS+YSN+EGL PDRIVPTVGLNI
Sbjct: 1 MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLSPDRIVPTVGLNI 60
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
GR+EV N+KLVFWDLGGQPGLRSIWEKYYEEAHAV++VIDAACPS+FEDSK+ALEKVLR+
Sbjct: 61 GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
EDLQGAPLL+LANKQDLP+AVSA+EL+RYLDLKKLDERV MFEAVSGYDG GIK+SVEWL
Sbjct: 121 EDLQGAPLLVLANKQDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWL 180
Query: 181 VEVMERSKRTEMLRARAG 198
V++MERSKRTE+LRARAG
Sbjct: 181 VDIMERSKRTEILRARAG 198
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136948|ref|XP_002322456.1| predicted protein [Populus trichocarpa] gi|222869452|gb|EEF06583.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 368 bits (944), Expect = e-99, Method: Compositional matrix adjust.
Identities = 175/200 (87%), Positives = 192/200 (96%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
MFSLFYGLWKY+F+KTE HVLILGIDKAGKTTLLEKLKSVYSN+EGLPPDRIVPTVGLNI
Sbjct: 1 MFSLFYGLWKYMFSKTELHVLILGIDKAGKTTLLEKLKSVYSNLEGLPPDRIVPTVGLNI 60
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
GRIEV NSKL+FWDLGGQPGLRSIWEKYY+EAHA+++VIDAACPSRFED+K+ LEKVLR+
Sbjct: 61 GRIEVENSKLLFWDLGGQPGLRSIWEKYYDEAHALIYVIDAACPSRFEDAKSELEKVLRH 120
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
++LQGAPLLILANKQDLPD+VSADE+ RYLDLKKLDERV MFEAVS YDG GIKESVEWL
Sbjct: 121 DELQGAPLLILANKQDLPDSVSADEVDRYLDLKKLDERVYMFEAVSAYDGMGIKESVEWL 180
Query: 181 VEVMERSKRTEMLRARAGAS 200
+EVMERSKRTEMLRARAG +
Sbjct: 181 LEVMERSKRTEMLRARAGVT 200
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255646406|gb|ACU23682.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 365 bits (937), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 172/199 (86%), Positives = 189/199 (94%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
MFSLFYGLWKY+F+K E HVLILGIDKAGKTTLLEK+KSVYS++EG+PPDRI+PTVGLNI
Sbjct: 1 MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSVYSDIEGIPPDRIIPTVGLNI 60
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV+FV+DA+CPSR ED+K+ALEKVLR
Sbjct: 61 GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVVDASCPSRLEDAKSALEKVLRR 120
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
EDLQGAPLLILANKQD+P+AVSADEL +YLDLKKLDERV MFEAVS YDG GI+ES EWL
Sbjct: 121 EDLQGAPLLILANKQDIPEAVSADELPQYLDLKKLDERVFMFEAVSAYDGMGIRESAEWL 180
Query: 181 VEVMERSKRTEMLRARAGA 199
VEV ERSKRTEMLRARAGA
Sbjct: 181 VEVTERSKRTEMLRARAGA 199
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495822|ref|XP_002265687.2| PREDICTED: ADP-ribosylation factor-related protein 1-like [Vitis vinifera] gi|296086877|emb|CBI33044.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 170/201 (84%), Positives = 191/201 (95%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
MFSLFYGLWKY+F+K EFHVLILGI+KAGKTTLLEKLK++YSN+EGLPPDRI+PTVGLNI
Sbjct: 1 MFSLFYGLWKYLFSKAEFHVLILGINKAGKTTLLEKLKALYSNLEGLPPDRILPTVGLNI 60
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
GR+E+SN+KLVFWDLGGQPGLRSIWEKYYEEAHAVV+VIDA+CPSRFEDSK+ALEK+LR+
Sbjct: 61 GRVELSNTKLVFWDLGGQPGLRSIWEKYYEEAHAVVYVIDASCPSRFEDSKSALEKILRH 120
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
EDLQGAPLLILANKQDL DA S++E+ARYLDLKKLDERV M EAVS YDG GIKESV+WL
Sbjct: 121 EDLQGAPLLILANKQDLGDAASSEEIARYLDLKKLDERVYMVEAVSAYDGMGIKESVDWL 180
Query: 181 VEVMERSKRTEMLRARAGAST 201
VEVMERSKRTEMLR RA ++
Sbjct: 181 VEVMERSKRTEMLRVRAAVTS 201
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217073166|gb|ACJ84942.1| unknown [Medicago truncatula] gi|388496722|gb|AFK36427.1| unknown [Medicago truncatula] gi|434856055|gb|AGB56248.1| ADP-ribosylation factor-like protein [Medicago falcata] | Back alignment and taxonomy information |
|---|
Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 173/199 (86%), Positives = 189/199 (94%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
MFSLFYGLW+++F+K E VLILGIDKAGKTTLLEK+KSVY+NVEGLPPDRIVPTVGLNI
Sbjct: 1 MFSLFYGLWQFMFSKLELRVLILGIDKAGKTTLLEKIKSVYTNVEGLPPDRIVPTVGLNI 60
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
GRIEV+N KLVFWDLGGQ GLRSIWEKYYEEAHAVVFVIDA+CPSRFED+K+ALEKVLR+
Sbjct: 61 GRIEVANRKLVFWDLGGQLGLRSIWEKYYEEAHAVVFVIDASCPSRFEDAKSALEKVLRH 120
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
EDL+GAPLLILANKQDLP+AVS++ELARYLDLKKLDERV MFEAVS YDG GI+ES EWL
Sbjct: 121 EDLKGAPLLILANKQDLPEAVSSEELARYLDLKKLDERVYMFEAVSAYDGLGIRESAEWL 180
Query: 181 VEVMERSKRTEMLRARAGA 199
VEVMERSKRTEMLR RAGA
Sbjct: 181 VEVMERSKRTEMLRLRAGA 199
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807218|ref|NP_001242354.1| uncharacterized protein LOC100785527 [Glycine max] gi|255647885|gb|ACU24401.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 165/187 (88%), Positives = 181/187 (96%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
MFSLFYGLWKY+F+K E HVLILGIDKAGKTTLLEK+KSVYSN+EG+PPDRI+PTVGLNI
Sbjct: 1 MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSVYSNIEGIPPDRIIPTVGLNI 60
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV+FV+DA+CPSRFED+K+ALEKVLR+
Sbjct: 61 GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVVDASCPSRFEDAKSALEKVLRH 120
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
EDLQGAPLLILANKQD+P+AVSADELARYLDLKKLDERV MFEAVS YDG GI+ES EWL
Sbjct: 121 EDLQGAPLLILANKQDIPEAVSADELARYLDLKKLDERVSMFEAVSAYDGMGIRESAEWL 180
Query: 181 VEVMERS 187
VEVMERS
Sbjct: 181 VEVMERS 187
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 204 | ||||||
| TAIR|locus:2145151 | 205 | GB1 "GTP-binding protein 1" [A | 0.970 | 0.965 | 0.838 | 4.3e-86 | |
| DICTYBASE|DDB_G0283631 | 216 | arfrp1 "ARF-like protein" [Dic | 0.720 | 0.680 | 0.517 | 1.2e-45 | |
| UNIPROTKB|E1C1J0 | 201 | ARFRP1 "Uncharacterized protei | 0.916 | 0.930 | 0.442 | 5.7e-43 | |
| FB|FBgn0030088 | 200 | CG7039 [Drosophila melanogaste | 0.911 | 0.93 | 0.465 | 7.3e-43 | |
| MGI|MGI:1923938 | 201 | Arfrp1 "ADP-ribosylation facto | 0.916 | 0.930 | 0.447 | 1.2e-42 | |
| RGD|621683 | 201 | Arfrp1 "ADP-ribosylation facto | 0.916 | 0.930 | 0.447 | 1.2e-42 | |
| UNIPROTKB|Q32LJ2 | 201 | ARFRP1 "ADP-ribosylation facto | 0.916 | 0.930 | 0.447 | 1.5e-42 | |
| ZFIN|ZDB-GENE-050227-14 | 201 | arfrp1 "ADP-ribosylation facto | 0.916 | 0.930 | 0.442 | 1.9e-42 | |
| UNIPROTKB|Q13795 | 201 | ARFRP1 "ADP-ribosylation facto | 0.916 | 0.930 | 0.447 | 3.2e-42 | |
| UNIPROTKB|J9P4D5 | 201 | ARFRP1 "Uncharacterized protei | 0.916 | 0.930 | 0.442 | 3.6e-41 |
| TAIR|locus:2145151 GB1 "GTP-binding protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 166/198 (83%), Positives = 184/198 (92%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
MFSL GLW Y+F+KTEF+VLILGIDKAGKTT LEKLK++YS EGLP DRIVPTVGLNI
Sbjct: 1 MFSLMSGLWSYMFSKTEFNVLILGIDKAGKTTFLEKLKTIYSISEGLPHDRIVPTVGLNI 60
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
GRIEVSN+K+VFWDLGGQPGLRSIWEKYYEEAHA++++IDAACP+RFEDSK+ALEK LR+
Sbjct: 61 GRIEVSNAKIVFWDLGGQPGLRSIWEKYYEEAHALIYLIDAACPTRFEDSKSALEKALRH 120
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
EDLQGAPLLILANKQDL +AVSA+EL RYLDLKKLDERV MFEAVSGYDG GIKES+EWL
Sbjct: 121 EDLQGAPLLILANKQDLTNAVSAEELDRYLDLKKLDERVYMFEAVSGYDGRGIKESIEWL 180
Query: 181 VEVMERSKRTEMLRARAG 198
V VME+SKRTE LRARAG
Sbjct: 181 VGVMEKSKRTESLRARAG 198
|
|
| DICTYBASE|DDB_G0283631 arfrp1 "ARF-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 443 (161.0 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 76/147 (51%), Positives = 112/147 (76%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
M+SLF GLWKY+F+K E+ +LILG+D +GKTTLLE++K+ Y+ + GLPP +IVPTVGLNI
Sbjct: 1 MYSLFVGLWKYLFSKNEYFILILGLDNSGKTTLLEQIKTKYTKIPGLPPHKIVPTVGLNI 60
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
R + + KL++WDLGGQ LR+IW K++ + HA+++V+D++ RF +SK LE V+ +
Sbjct: 61 ARTQFQDIKLIYWDLGGQTQLRTIWNKFFSDVHAIIYVVDSSDKERFNESKDELEIVIND 120
Query: 121 EDLQGAPLLILANKQDLPDAVSADELA 147
L+ PLL+ NKQDLPD+ + + L+
Sbjct: 121 SKLKDVPLLLFFNKQDLPDSETIEYLS 147
|
|
| UNIPROTKB|E1C1J0 ARFRP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 84/190 (44%), Positives = 133/190 (70%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L GL+KY+F + E+ +LILG+D AGKTT LE+ K+ ++ N +G+ +I TVGLN
Sbjct: 1 MYTLLSGLYKYMFQRDEYCILILGLDNAGKTTFLEQTKTRFNKNYKGMSLSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
IG I+V ++L+FWDLGGQ L+S+W+KYY E+H V++VID+ R +SK A EK++
Sbjct: 61 IGTIDVGKTRLMFWDLGGQEELQSLWDKYYAESHGVIYVIDSTDEERLSESKRAFEKMIT 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLD-LKKLDERVCMFEAVSGYDGFGIKESV 177
+E L+G P+L+LANKQD+ +S ++ + D + K+ +R C+ +A S G G+ E +
Sbjct: 121 SEALEGVPILVLANKQDVETCLSIPDIKTAFSDCINKIGKRDCLTQACSALTGKGVNEGI 180
Query: 178 EWLVEVMERS 187
EW+V+ + R+
Sbjct: 181 EWMVKCVVRN 190
|
|
| FB|FBgn0030088 CG7039 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 88/189 (46%), Positives = 126/189 (66%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L +G +KY+ K ++ V+ILG+D AGKTT LE K+ ++ N +GL P +I TVGLN
Sbjct: 1 MYTLMHGFYKYMTQKDDYCVVILGLDNAGKTTYLEAAKTTFTRNYKGLNPSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
IG I+V +L FWDLGGQ L+S+W+KYY+E+H V++VID+ R E+SK +K+++
Sbjct: 61 IGTIDVQGVRLNFWDLGGQQELQSLWDKYYQESHGVIYVIDSNDRERMEESKAIFDKMIK 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLDLKK--LDERVCMFEAVSGYDGFGIKESV 177
NE L G PLLILANKQDLPD + E+ + R C+ VS G G+ E +
Sbjct: 121 NELLSGVPLLILANKQDLPDVMGVREIKPVFQQAGALIGRRDCLTIPVSALHGEGVDEGI 180
Query: 178 EWLVEVMER 186
+WLVE ++R
Sbjct: 181 KWLVEAIKR 189
|
|
| MGI|MGI:1923938 Arfrp1 "ADP-ribosylation factor related protein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 85/190 (44%), Positives = 130/190 (68%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+ +I TVGLN
Sbjct: 1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
IG ++V ++L+FWDLGGQ L+S+W+KYY E H V++VID+ R +SK A EKV+
Sbjct: 61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVS 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEAVSGYDGFGIKESV 177
+E L G P+L+LANKQD+ +S ++ + D K+ R C+ +A S G G++E +
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGI 180
Query: 178 EWLVEVMERS 187
EW+V+ + R+
Sbjct: 181 EWMVKCVVRN 190
|
|
| RGD|621683 Arfrp1 "ADP-ribosylation factor related protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 85/190 (44%), Positives = 130/190 (68%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+ +I TVGLN
Sbjct: 1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
IG ++V ++L+FWDLGGQ L+S+W+KYY E H V++VID+ R +SK A EKV+
Sbjct: 61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVS 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEAVSGYDGFGIKESV 177
+E L G P+L+LANKQD+ +S ++ + D K+ R C+ +A S G G++E +
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGI 180
Query: 178 EWLVEVMERS 187
EW+V+ + R+
Sbjct: 181 EWMVKCVVRN 190
|
|
| UNIPROTKB|Q32LJ2 ARFRP1 "ADP-ribosylation factor-related protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 85/190 (44%), Positives = 130/190 (68%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L GL+KY+F K E+ VLILG+D AGKTT LE+ K+ ++ N +G+ +I TVGLN
Sbjct: 1 MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
IG ++V ++L+FWDLGGQ L+S+W+KYY E H V++VID+ R +SK A EK++
Sbjct: 61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVT 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDL-KKLDERVCMFEAVSGYDGFGIKESV 177
+E L G P+L+LANKQD+ +S ++ + D K+ R C+ +A S G G++E +
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCASKIGRRDCLTQACSALTGKGVREGI 180
Query: 178 EWLVEVMERS 187
EW+V+ + R+
Sbjct: 181 EWMVKCVVRN 190
|
|
| ZFIN|ZDB-GENE-050227-14 arfrp1 "ADP-ribosylation factor related protein 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 84/190 (44%), Positives = 132/190 (69%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L GL+KY+F K E+ +LILG+D AGKTT LE+ K+ +S N +G+ +I TVGLN
Sbjct: 1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQTKTRFSKNYKGMNLSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
IG I+V ++L+FWDLGGQ L+S+W+KYY E+H V++VID+ R +SK A EK++
Sbjct: 61 IGTIDVGKARLMFWDLGGQEELQSLWDKYYAESHGVIYVIDSTDEERLGESKNAFEKMIS 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEAVSGYDGFGIKESV 177
+E L+G PLL+LANKQD+ + +S ++ + D K+ +R C+ + + G G+ + +
Sbjct: 121 SEALEGVPLLVLANKQDVENCLSVPDIKTAFSDCAPKIGKRDCLVQPCAALSGQGVNDGI 180
Query: 178 EWLVEVMERS 187
EW+V+ + R+
Sbjct: 181 EWMVKCVIRN 190
|
|
| UNIPROTKB|Q13795 ARFRP1 "ADP-ribosylation factor-related protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 85/190 (44%), Positives = 130/190 (68%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+ +I TVGLN
Sbjct: 1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
IG ++V ++L+FWDLGGQ L+S+W+KYY E H V++VID+ R +SK A EKV+
Sbjct: 61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVT 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDL-KKLDERVCMFEAVSGYDGFGIKESV 177
+E L G P+L+LANKQD+ +S ++ + D K+ R C+ +A S G G++E +
Sbjct: 121 SEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTGKGVREGI 180
Query: 178 EWLVEVMERS 187
EW+V+ + R+
Sbjct: 181 EWMVKCVVRN 190
|
|
| UNIPROTKB|J9P4D5 ARFRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 84/190 (44%), Positives = 127/190 (66%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
M++L GL+KY+F K E+ VLILG+D AGKTT LE+ K+ ++ N +G+ +I TVGLN
Sbjct: 1 MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
I +EV L+FW+LGGQ L+S+W+KYY E H V++VID+ R +SK A EK++
Sbjct: 61 IRTVEVGKGPLMFWELGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKRAFEKMVT 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDL-KKLDERVCMFEAVSGYDGFGIKESV 177
+E L G P+L+LANKQD+ +S ++ + D K+ R C+ +A S G G++E +
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTGKGVREGI 180
Query: 178 EWLVEVMERS 187
EW+V+ + R+
Sbjct: 181 EWMVKCVVRN 190
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q63055 | ARFRP_RAT | No assigned EC number | 0.4473 | 0.9166 | 0.9303 | yes | no |
| P0CM16 | ARF_CRYNJ | No assigned EC number | 0.3446 | 0.8137 | 0.9120 | yes | no |
| P36579 | ARF1_SCHPO | No assigned EC number | 0.3485 | 0.8039 | 0.9111 | yes | no |
| Q02804 | ARL3_YEAST | No assigned EC number | 0.3641 | 0.9166 | 0.9444 | yes | no |
| Q5R579 | ARFRP_PONAB | No assigned EC number | 0.4421 | 0.9166 | 0.9303 | yes | no |
| Q8BXL7 | ARFRP_MOUSE | No assigned EC number | 0.4473 | 0.9166 | 0.9303 | yes | no |
| Q13795 | ARFRP_HUMAN | No assigned EC number | 0.4421 | 0.9166 | 0.9303 | yes | no |
| Q32LJ2 | ARFRP_BOVIN | No assigned EC number | 0.4421 | 0.9166 | 0.9303 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 204 | |||
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 5e-90 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 3e-61 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 1e-51 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 1e-48 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 2e-47 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 2e-47 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 6e-41 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 1e-40 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 3e-40 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 1e-39 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 2e-39 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 3e-39 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 6e-39 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 5e-38 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 2e-37 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 6e-37 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 1e-36 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 2e-34 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 1e-32 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 2e-30 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 2e-26 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 5e-21 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 4e-19 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 9e-15 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 7e-14 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 3e-13 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 2e-12 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 6e-10 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 4e-09 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 9e-09 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 2e-08 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 4e-08 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 6e-08 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 6e-07 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 6e-07 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 9e-07 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 2e-06 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 4e-06 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 4e-06 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 5e-06 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 8e-06 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 9e-06 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 1e-05 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 1e-05 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 2e-05 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 2e-05 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 2e-05 | |
| TIGR02729 | 329 | TIGR02729, Obg_CgtA, Obg family GTPase CgtA | 3e-05 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 4e-05 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 4e-05 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 6e-05 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 9e-05 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 1e-04 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 1e-04 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 1e-04 | |
| cd00880 | 161 | cd00880, Era_like, E | 3e-04 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 3e-04 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 5e-04 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 5e-04 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 5e-04 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 7e-04 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 8e-04 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 0.001 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 0.002 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 0.002 | |
| cd01878 | 204 | cd01878, HflX, HflX GTPase family | 0.002 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 0.002 | |
| cd04101 | 167 | cd04101, RabL4, Rab GTPase-like family 4 (Rab-like | 0.002 | |
| TIGR00073 | 208 | TIGR00073, hypB, hydrogenase accessory protein Hyp | 0.003 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 0.003 | |
| smart00275 | 342 | smart00275, G_alpha, G protein alpha subunit | 0.003 | |
| PRK12299 | 335 | PRK12299, obgE, GTPase CgtA; Reviewed | 0.004 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 5e-90
Identities = 91/167 (54%), Positives = 121/167 (72%), Gaps = 3/167 (1%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
VLILG+D AGKTT LE+ K+ +S N +GL P +I PTVGLNIG IEV ++L+FWDLGGQ
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQ 61
Query: 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138
LRS+W+KYY E+H V++VID+ RF +SK+A EKV+ NE L+G PLL+LANKQDLP
Sbjct: 62 EELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLP 121
Query: 139 DAVSADELARYLDLK--KLDERVCMFEAVSGYDGFGIKESVEWLVEV 183
DA+S E+ D + R C+ + VS +G G++E +EWLV+
Sbjct: 122 DALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLVDC 168
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 3e-61
Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 7/164 (4%)
Query: 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
+L+LG+D AGKTT+L KLK +PT+G N+ +E N K WD+GGQ
Sbjct: 1 RILMLGLDGAGKTTILYKLK-------LGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQ 53
Query: 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138
+R +W+ YYE ++FV+D++ R E++K L K+L E+L+GAPLLILANKQDLP
Sbjct: 54 DKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLP 113
Query: 139 DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
A++ EL L L+ + R + S G G+ E ++WL+E
Sbjct: 114 GALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIE 157
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 1e-51
Identities = 71/169 (42%), Positives = 95/169 (56%), Gaps = 13/169 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFW 73
E +LILG+D AGKTT+L KLK IV PT+G N+ + N K W
Sbjct: 14 EMRILILGLDNAGKTTILYKLK----------LGEIVTTIPTIGFNVETVTYKNVKFTVW 63
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D+GGQ LR +W Y+ AV+FV+D+A R E++K L +L E+L APLLILAN
Sbjct: 64 DVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILAN 123
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
KQDLP A+S E+ L L +L +R + S G G+ E ++WL
Sbjct: 124 KQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSN 172
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 1e-48
Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 7/170 (4%)
Query: 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
++ E +L+LG+D AGKTT+L++L S E + I PT G NI ++ KL
Sbjct: 11 SSRQEVRILLLGLDNAGKTTILKQLAS-----EDISH--ITPTQGFNIKNVQADGFKLNV 63
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD+GGQ +R W Y+E +++VID+A RFE++ L ++L E L G P+L+ A
Sbjct: 64 WDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFA 123
Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
NKQDL A A+E+A L+L + +R +A S G G++E + W+ +
Sbjct: 124 NKQDLLTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVCK 173
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 2e-47
Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Query: 3 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEK--LKSVYSNVEGLPPDRIVPTVGLNI 60
LF LW F + E+ V+I+G+D AGKTT+L + L V PT+G N+
Sbjct: 1 LLFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTS---------PTIGSNV 51
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
I N + + WD+GGQ LRS W YY AV+ VID+ R +K L K+L +
Sbjct: 52 EEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAH 111
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
EDL+ A LL+LANKQDL A++ E++ L L + + + G G+ E ++W+
Sbjct: 112 EDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171
Query: 181 V 181
Sbjct: 172 A 172
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 2e-47
Identities = 67/165 (40%), Positives = 95/165 (57%), Gaps = 7/165 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTT+L+K G I PT+G NI +E + KL WD+G
Sbjct: 14 EMRILMLGLDNAGKTTILKKFN-------GEDISTISPTLGFNIKTLEYNGYKLNIWDVG 66
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ LRS W Y+E A+++V+D++ +R ED K L+K+L E L GA LLI ANKQD
Sbjct: 67 GQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQD 126
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
LP A+S +E+ L+L + S G + + ++WLV
Sbjct: 127 LPGALSPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLV 171
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 6e-41
Identities = 64/183 (34%), Positives = 104/183 (56%), Gaps = 11/183 (6%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
+K +F K E +L++G+D AGKTT+L KLK V + + PT+G N+ +E
Sbjct: 8 AFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTI---------PTIGFNVETVEY 58
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
N K WD+GGQ LR +W YY+ + ++FV+D+ R D++ LE++L ++L+
Sbjct: 59 KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRD 118
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185
A LL+ ANKQDLP+A+S E+ L L + +R + G+ E ++WL ++
Sbjct: 119 AVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178
Query: 186 RSK 188
+S
Sbjct: 179 KSM 181
|
Length = 182 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 1e-40
Identities = 60/159 (37%), Positives = 98/159 (61%), Gaps = 9/159 (5%)
Query: 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGG 77
VL+LG+D AGK+TLL KLK +PTVG N+ +++ + L WD+GG
Sbjct: 1 QVLLLGLDSAGKSTLLYKLK-------HAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGG 53
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q +R++W+ Y E +V+V+D++ +R ++S+ L+ +L+NE ++G P+++LANKQDL
Sbjct: 54 QEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113
Query: 138 PDAVSADELARYLDLKKL-DERVCMFEAVSGYDGFGIKE 175
P A++A+E+ R LKK +R + S G G+ E
Sbjct: 114 PGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAE 152
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 3e-40
Identities = 61/162 (37%), Positives = 95/162 (58%), Gaps = 8/162 (4%)
Query: 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81
++G+ +GKTTL+ + S D I PTVG N+ ++ N + WDLGGQP
Sbjct: 4 LVGLQNSGKTTLVNVIAS-----GQFSEDTI-PTVGFNMRKVTKGNVTIKVWDLGGQPRF 57
Query: 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141
RS+WE+Y +A+V+V+DAA + E +K L +L L+G PLL+L NK DLP A+
Sbjct: 58 RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117
Query: 142 SADELARYLDLKKLDER-VCMFEAVSGYDGFGIKESVEWLVE 182
S DEL ++LK + +R V + ++S + I ++WL++
Sbjct: 118 SVDELIEQMNLKSITDREVSCY-SISAKEKTNIDIVLDWLIK 158
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-39
Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 7/164 (4%)
Query: 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
++L+LG+D +GKTT++ +LK IVPTVG N+ + N +D+ GQ
Sbjct: 1 NILVLGLDNSGKTTIINQLKP-----SNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQ 55
Query: 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA--PLLILANKQD 136
R +WE YY+ ++FVID++ R +K LE +L + D++ P+L ANK D
Sbjct: 56 GKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMD 115
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
LPDA++A ++ + L L+ + ++ A S G G+ E V+WL
Sbjct: 116 LPDALTAVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWL 159
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-39
Identities = 68/199 (34%), Positives = 93/199 (46%), Gaps = 32/199 (16%)
Query: 1 MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTV 56
+F FY + + K E ++ LG+D AGKTTLL LK DR+ VPT+
Sbjct: 2 IFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKD----------DRLAQHVPTL 51
Query: 57 GLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEK 116
+ + N K +DLGG R +W+ Y+ E +VF++DAA P RF++SK L+
Sbjct: 52 HPTSEELTIGNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDS 111
Query: 117 VLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER---------------VCM 161
+L +E+L P+LIL NK D P AVS +EL L L V M
Sbjct: 112 LLNDEELANVPILILGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFM 171
Query: 162 FEAVSGYDGFGIKESVEWL 180
V G E WL
Sbjct: 172 CSVVKRQ---GYGEGFRWL 187
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 3e-39
Identities = 59/169 (34%), Positives = 94/169 (55%), Gaps = 7/169 (4%)
Query: 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
+F E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K
Sbjct: 4 LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFN 56
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
WD+GGQ +R +W YY ++FV+D+A R ++++ L +++ + +++ A LL+
Sbjct: 57 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVF 116
Query: 132 ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
ANKQDLPDA+ E+ L L ++ +R + G G+ E + WL
Sbjct: 117 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 6e-39
Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 11/166 (6%)
Query: 20 VLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
+LILG+D AGKTT+L +L+ V + + PT+G N+ + N K WDLGG
Sbjct: 2 ILILGLDGAGKTTILYRLQVGEVVTTI---------PTIGFNVETVTYKNLKFQVWDLGG 52
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q +R W YY A+++V+D+ R SK+ L +L E+L+ A LL+ ANKQD+
Sbjct: 53 QTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDM 112
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 183
P A+S E+A L L +L +R S G G+ E ++WLV
Sbjct: 113 PGALSEAEVAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLVNT 158
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 5e-38
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 13/176 (7%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK---SVYSNVEGLPPDRIVPTVGLNIGRIE 64
L+ +F E +L++G+D AGKTT+L KLK SV + +PT+G N+ +
Sbjct: 4 LFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTT----------IPTIGFNVETVT 53
Query: 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
N WD+GGQ +R +W YY ++FV+D+ R ++++ L ++L ++L+
Sbjct: 54 YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELR 113
Query: 125 GAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
A +L+ ANKQDLPDA+ A E+ L L + +R + G G+ E + WL
Sbjct: 114 DAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWL 169
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-37
Identities = 72/184 (39%), Positives = 108/184 (58%), Gaps = 17/184 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLK-SVYSNVEGLPPDRIVPTVGLNIGRIEVS--NSKLV--- 71
H+++LG+D AGKTT+L +LK + + N VPT G N +I+VS N+K V
Sbjct: 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT--------VPTKGFNTEKIKVSLGNAKGVTFH 55
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
FWD+GGQ LR +W+ Y +VFV+D+ R E++KT L K+ + + QG P+L+L
Sbjct: 56 FWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVL 115
Query: 132 ANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRT 190
ANKQDLP+A+ E+ + L L +L + G G++E +E L E++ KR
Sbjct: 116 ANKQDLPNALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMI--LKRR 173
Query: 191 EMLR 194
+MLR
Sbjct: 174 KMLR 177
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 6e-37
Identities = 61/182 (33%), Positives = 102/182 (56%), Gaps = 11/182 (6%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGL 58
M F L+ +F K E +L++G+D AGKTT+L KLK + + + PT+G
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGF 51
Query: 59 NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL 118
N+ +E N WD+GGQ +R +W Y++ ++FV+D+ R +++ L ++L
Sbjct: 52 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML 111
Query: 119 RNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178
++L+ A LL+ ANKQDLP+A++A E+ L L L +R ++ G G+ E ++
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171
Query: 179 WL 180
WL
Sbjct: 172 WL 173
|
Length = 181 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-36
Identities = 57/163 (34%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 20 VLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
+L++G+D AGKTT+L KLK + + + PT+G N+ +E N WD+GG
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGG 53
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q +R +W Y++ ++FV+D+ R +++ L+++L ++L+ A LL+ ANKQDL
Sbjct: 54 QDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
P+A+SA E+ L L L R +A G G+ E ++WL
Sbjct: 114 PNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWL 156
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-34
Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 16/173 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
+L +G+D AGKTTL+ L +G P ++ PTVG ++ + ++ +DLGG
Sbjct: 2 LLTVGLDNAGKTTLVSAL-------QGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGA 54
Query: 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139
R IW YY EAH +VFV+D++ R ++ K L ++L++ + G P+L+LANKQD +
Sbjct: 55 NFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114
Query: 140 AVSADELARYLDLKKLDER---VCMFEAVSGYDGFG------IKESVEWLVEV 183
A+ ++ YL L+KL +C E S +G G I E + WL+
Sbjct: 115 ALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLAA 167
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 115 bits (288), Expect = 1e-32
Identities = 65/162 (40%), Positives = 94/162 (58%), Gaps = 8/162 (4%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
V+ LG+D AGKTT+L KLK E + P +PT+G N+ +E N K WD+GG+
Sbjct: 2 VVTLGLDGAGKTTILFKLK----QDEFMQP---IPTIGFNVETVEYKNLKFTIWDVGGKH 54
Query: 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139
LR +W+ YY AVVFVID++ R ++ + L K+L ++L+ A LLI ANKQD+
Sbjct: 55 KLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114
Query: 140 AVSADELARYLDLKKL-DERVCMFEAVSGYDGFGIKESVEWL 180
A+S +E+ L L KL R + G G+ E ++WL
Sbjct: 115 ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWL 156
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-30
Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
+L+LG+D AGKT+LL L S + +VPT G N I ++ + ++GG
Sbjct: 2 ILVLGLDGAGKTSLLHSLSS------ERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQ 55
Query: 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLP 138
LR W++Y + ++FV+D+A R ++ L ++L++ DL PL++LANKQDLP
Sbjct: 56 NLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDL---PLVVLANKQDLP 112
Query: 139 DAVSADELARYLDLKKLDE 157
A S E+ + L+L+ +
Sbjct: 113 AARSVQEIHKELELEPIAR 131
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 2e-26
Identities = 59/160 (36%), Positives = 79/160 (49%), Gaps = 24/160 (15%)
Query: 2 FSLFY------GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV-- 53
F FY GLW +L LG+D AGKTTLL LK+ DR+
Sbjct: 1 FDWFYDILASLGLWN-----KHAKILFLGLDNAGKTTLLHMLKN----------DRLAQH 45
Query: 54 -PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112
PT + + N K +DLGG R +W+ Y+ E + +V+++DA RF +SK
Sbjct: 46 QPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKR 105
Query: 113 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL 152
L+ +L +E+L P LIL NK D P A S DEL L L
Sbjct: 106 ELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGL 145
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 5e-21
Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
EF +++LG GKTTLL +L EG PP I N KL
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVG-DEFPEGYPPTIGNLDPAKTI-EPYRRNIKLQL 58
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ RS+ +YY A+ ++ V D+ ++ + LR P+L++
Sbjct: 59 WDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVG 118
Query: 133 NKQDLPDAVSADEL 146
NK DL D S+ E
Sbjct: 119 NKIDLFDEQSSSEE 132
|
Length = 219 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 4e-19
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 15/169 (8%)
Query: 21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS--KLVFWDLGGQ 78
+++G GK++LL L + V G D T ++ E+ KLV D G
Sbjct: 1 VVVGRGGVGKSSLLNAL--LGGEV-GEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGL 57
Query: 79 -----PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
G + A ++ V+D+ ED A +LR +G P++++ N
Sbjct: 58 DEFGGLGREELARLLLRGADLILLVVDSTDRESEED---AKLLILRRLRKEGIPIILVGN 114
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
K DL + +EL R +L K+ V +FE VS G G+ E E L+E
Sbjct: 115 KIDLLEEREVEELLRLEELAKI-LGVPVFE-VSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 9e-15
Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 12/130 (9%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVY-SNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVF- 72
E ++I+G GK+TLL +L S E P N IE F
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEY------KPGTTRNYVTTVIEEDGKTYKFN 54
Query: 73 -WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP-SRFEDSKTALEKVLRNEDLQGAPLLI 130
D GQ +I YY + + V D E+ K + + G P+++
Sbjct: 55 LLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIIL 114
Query: 131 LANKQDLPDA 140
+ NK DL DA
Sbjct: 115 VGNKIDLRDA 124
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 7e-14
Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 19/159 (11%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP----------TVGLNIGRIEV-SNS 68
++++G AGKTT + L S+ + + TV ++ G IE+ ++
Sbjct: 13 IVVIGPVGAGKTTFVRAL----SDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDT 68
Query: 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
+ + GQ + +WE A + ++D++ P F A E + P+
Sbjct: 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFH----AEEIIDFLTSRNPIPV 124
Query: 129 LILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG 167
++ NKQDL DA+ +++ L L+ L V +A G
Sbjct: 125 VVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEG 163
|
Length = 187 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-13
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFW 73
F ++++G GKT L Y G P+R T+G++ I+ K+ W
Sbjct: 3 FKIIVIGDSNVGKTCL------TYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLW 56
Query: 74 DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D GQ R S+ + YY HAVVFV D + F + +E+ ++ P +++
Sbjct: 57 DTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVG 116
Query: 133 NKQDLPDA--VSADELARYLD 151
NK DL + V D R+ D
Sbjct: 117 NKCDLREQIQVPTDLAQRFAD 137
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 2e-12
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 18/171 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNS--KLVFW 73
F ++++G GKT+LL + V+ + T+G++ IEV KL W
Sbjct: 1 FKIVLIGDSGVGKTSLLLRF------VDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIW 54
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ RSI YY AH + V D FE+ L ++ P++++ N
Sbjct: 55 DTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAP-PNIPIILVGN 113
Query: 134 KQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
K DL D VS +E ++ L +F S G + E+ E L
Sbjct: 114 KSDLEDERQVSTEEAQQFAKENGL-----LFFETSAKTGENVDEAFESLAR 159
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 6e-10
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 24/174 (13%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNS--KLVFW 73
F ++++G GK++LL + +G ++ T+G++ IEV KL W
Sbjct: 1 FKIILIGDSGVGKSSLLSRF------TDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIW 54
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ RSI YY A + V D FE+ + L+++ ++++ N
Sbjct: 55 DTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYAS-PNVVIMLVGN 113
Query: 134 KQDLPD--AVS---ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
K DL + VS A+ A F S ++E+ E L
Sbjct: 114 KSDLEEQRQVSREEAEAFAEEHG--------LPFFETSAKTNTNVEEAFEELAR 159
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 4e-09
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
F ++++G GKT L+ + +GL P T+G++ I +E+ K L W
Sbjct: 8 FKIVLIGNAGVGKTCLVRRF------TQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIW 61
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
D GQ RSI + YY A+A++ D C F
Sbjct: 62 DTAGQERFRSITQSYYRSANALILTYDITCEESFR 96
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-09
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 19 HVLILGIDKAGKTTLLEKL--KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
VL+LG +GKT L KL V S V + P+ V + N + KL D+
Sbjct: 2 TVLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPN--VASFYSNSSK----GKKLTLVDVP 55
Query: 77 GQPGLRSIWEKYYEEAH-AVVFVIDAACPSRFEDSKTALE---KVLRN-EDLQGA-PLLI 130
G LR +Y + + A+VFV+D+A + ++ + E +L + E ++ P+LI
Sbjct: 56 GHEKLRDKLLEYLKASLKAIVFVVDSA--TFQKNIRDVAEFLYDILTDLEKIKNKIPILI 113
Query: 131 LANKQDLPDAVSA 143
NKQDL A A
Sbjct: 114 ACNKQDLFTAKPA 126
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-08
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 18 FHVLILGIDKAGKTTLLEKLKS-VYSNVEG--LPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
F ++++G GKT ++++ KS +S +G + D + T+ + R+ KL WD
Sbjct: 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRV-----KLQIWD 58
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP---LLIL 131
GQ R+I + YY A+ + D S FE ++ + + GA LL++
Sbjct: 59 TAGQERFRTITQSYYRSANGAIIAYDITRRSSFE----SVPHWIEEVEKYGASNVVLLLI 114
Query: 132 ANKQDLPD--AVSADE---LARYLDL 152
NK DL + V +E LA + +
Sbjct: 115 GNKCDLEEQREVLFEEACTLAEHYGI 140
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-08
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
+L++G GK++LL + + + T+G++ + + V KL W
Sbjct: 1 LKILLIGDSGVGKSSLL------LRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIW 54
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R++ YY A V+ V D F++ T L ++ A +++ N
Sbjct: 55 DTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGN 114
Query: 134 KQDLPD-AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
K D + V+ +E AR + +F S G++++ E LVE
Sbjct: 115 KIDKENREVTREEGQKFAR--------KHNMLFIETSAKTRIGVQQAFEELVE 159
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 6e-08
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 24/176 (13%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFWDL 75
++++G GK++LL + P+ +PT+G++ IEV KL WD
Sbjct: 2 LVLVGDGGVGKSSLL------IRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDT 55
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ R++ YY A + V D FE+ K LE++LR+ D + P++++ NK
Sbjct: 56 AGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHAD-ENVPIVLVGNKC 114
Query: 136 DLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186
DL D VS +E LA+ L L F S ++E+ E L + +
Sbjct: 115 DLEDQRVVSTEEGEALAKELGLP--------FMETSAKTNENVEEAFEELAREILK 162
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-07
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + E + T+G++ I IE+ KL W
Sbjct: 4 FKLLLIGDSGVGKSCLLLRF------SEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIW 57
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A ++ V D FE+ K + + + + +++ N
Sbjct: 58 DTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS-EDVERMLVGN 116
Query: 134 KQDLPD--AVSADE---LARYLDLK 153
K D+ + VS +E LAR +K
Sbjct: 117 KCDMEEKRVVSKEEGEALAREYGIK 141
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-07
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
+L WD GQ RS+ Y ++ V V D F+++ ++ V R+E +
Sbjct: 50 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDV-RDERGNDVII 108
Query: 129 LILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175
+++ NK DL D VS +E KK E MF S G +K+
Sbjct: 109 VLVGNKTDLSDKRQVSTEEGE-----KKAKENNAMFIETSAKAGHNVKQ 152
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 9e-07
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLK-SVYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
F +LI+G GK++LL + + +S + + D + TV +N R+ KL WD
Sbjct: 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERV-----KLQIWD 61
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
GQ R+I YY H V+ V D F + K L+++ +N D +++ NK
Sbjct: 62 TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD--VCKVLVGNK 119
Query: 135 QDLPD 139
D P+
Sbjct: 120 NDDPE 124
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 103
V T G+ + + K +D+GGQ R W +E+ A++FV+ +
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212
Query: 104 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R E+S E++ + + P+++ NK+DL
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-06
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 18 FHVLILGIDKAGKTTLL-----EKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKL 70
+++LG +GKT+L+ E Y T+GL+ RI + S
Sbjct: 1 IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQ-----------TIGLDFFSRRITLPGSLN 49
Query: 71 V---FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR-NEDLQGA 126
V WD+GGQ + +KY A AV V D FE+ + L V + NE+ +
Sbjct: 50 VTLQVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETK 109
Query: 127 PLLIL-ANKQDLPD--AVSADELARY 149
P ++L NK DL V+A++ AR+
Sbjct: 110 PKMVLVGNKTDLEHNRQVTAEKHARF 135
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-06
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
V+++G +GK++LL +L V P + T+ ++ ++ L WD GG+
Sbjct: 1 KVVVIGDKGSGKSSLLSQL--VGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGR 58
Query: 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA-PLLILANKQ 135
L+ + + A A++ V D + + + L G P++++ NK
Sbjct: 59 EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-06
Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 34/186 (18%)
Query: 21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSK--------- 69
L LG GKTT L Y + + + TVG++ R+ ++
Sbjct: 8 LALGDSGVGKTTFL------YRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAF 61
Query: 70 ---LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
L WD GQ RS+ ++ +A + + D F + + + ++ + +
Sbjct: 62 RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENP 121
Query: 127 PLLILANKQDLPD--AVSAD---ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
++++ NK DLPD VS ELA + + +G + ++++VE L+
Sbjct: 122 DIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAA-----TGQN---VEKAVETLL 173
Query: 182 E-VMER 186
+ +M+R
Sbjct: 174 DLIMKR 179
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 8e-06
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN----IGRIEVSNSKLVFW 73
F V+++G GKT LL + K + TVG+ + ++ KL W
Sbjct: 1 FKVMLVGDSGVGKTCLLVRFKD-----GAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIW 55
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR--NEDLQGAPLLIL 131
D GQ RS+ YY +AHA++ + D S F++ + L ++L D+ +++L
Sbjct: 56 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVV---IMLL 112
Query: 132 ANKQDL 137
NK D+
Sbjct: 113 GNKADM 118
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 9e-06
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 26/177 (14%)
Query: 18 FHVLILGIDKAGKTTLL-----EKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
F +LI+G GKT+ L + S + + G+ D V TV N RI KL
Sbjct: 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGI--DFKVKTVYRNDKRI-----KLQI 54
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ R+I YY A + + D F + ++ + A ++++
Sbjct: 55 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQVILVG 113
Query: 133 NKQDLPD--AVSAD---ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184
NK D+ D VSA+ +LA L + FEA S + +K+ E LV+++
Sbjct: 114 NKCDMEDERVVSAERGRQLADQLGFE-------FFEA-SAKENINVKQVFERLVDII 162
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 19/143 (13%)
Query: 18 FHVLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVF 72
F +L++G GK+ LL + Y+ + + T+G++ I IE+ KL
Sbjct: 3 FKLLLIGDSGVGKSCLLLRFADDTYT-------ESYISTIGVDFKIRTIELDGKTVKLQI 55
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR--NEDLQGAPLLI 130
WD GQ R+I YY AH ++ V D F + K L+++ R +E++ L+
Sbjct: 56 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK---LL 112
Query: 131 LANKQDLPD--AVSADELARYLD 151
+ NK DL D V E + D
Sbjct: 113 VGNKCDLTDKKVVDYTEAKEFAD 135
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 63 IEVSNSKLV---FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS---KTALEK 116
IE + +V WD+ GQ + YY+ A + V D PS FE K L+
Sbjct: 42 IEWDPNTVVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDS 101
Query: 117 VLRNEDLQGAPLLILANKQDL---PDAVSADELARY 149
+ + + P L+LANK DL A +++ ++
Sbjct: 102 KVTLPNGEPIPALLLANKCDLKKERLAKDPEQMDQF 137
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-05
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK++LL S S+VE L PT+G++ I ++ V KL W
Sbjct: 15 FKILLIGDSGVGKSSLLVSFIS--SSVEDL-----APTIGVDFKIKQLTVGGKRLKLTIW 67
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVID 100
D GQ R++ YY A ++ V D
Sbjct: 68 DTAGQERFRTLTSSYYRNAQGIILVYD 94
|
Length = 211 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 2e-05
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
+L WD GQ RS+ Y ++ A + V D FE++ ++ +L NE + +
Sbjct: 30 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL-NERGKDVII 88
Query: 129 LILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 174
++ NK DL D V+ +E ++K E MF S G IK
Sbjct: 89 ALVGNKTDLGDLRKVTYEE-----GMQKAQEYNTMFHETSAKAGHNIK 131
|
Length = 176 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 55 TVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
T+G++ + R EV L WD GQ + I YY A A++ V D + E +
Sbjct: 32 TIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT 91
Query: 111 KTALEKVLRNEDLQGAPLLILANKQDL--PDAVSADELARYLDLKKLDERVCMFEAVSGY 168
+ LE L+ D L ++ K+DL P L +K E + AVS
Sbjct: 92 RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQY---ALMEQDAIKLAREMKAEYWAVSAL 148
Query: 169 DGFGIKE 175
G +++
Sbjct: 149 TGENVRD 155
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 3e-05
Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 38/187 (20%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK-LVFWDLGGQ 78
V ++G+ AGK+TL+ + + + P +VP N+G + V + + V D+
Sbjct: 160 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVP----NLGVVRVDDGRSFVIADI--- 212
Query: 79 PG---------------LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR---- 119
PG L+ I E ++ +ID + P D E +
Sbjct: 213 PGLIEGASEGAGLGHRFLKHI-----ERTRVLLHLIDIS-PEDGSDPIEDYEIIRNELKK 266
Query: 120 -NEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178
+ +L P +++ NK DL D +EL + L + L + V +S G G+ E +
Sbjct: 267 YSPELAEKPRIVVLNKIDLLDEEELEELLKEL-KEALGKPVF---PISALTGEGLDELLY 322
Query: 179 WLVEVME 185
L E++E
Sbjct: 323 ALAELLE 329
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 15/135 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSV-YSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVF 72
F +I+G GK+ LL + + V L T+G+ G I+ KL
Sbjct: 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-------TIGVEFGARMITIDGKQIKLQI 57
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ RSI YY A + V D F + LE ++ + +LI
Sbjct: 58 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLI-G 116
Query: 133 NKQDLPD--AVSADE 145
NK DL VS +E
Sbjct: 117 NKCDLESRREVSYEE 131
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F LI+G GK+ LL + +E T+G+ G + + KL W
Sbjct: 1 FKFLIIGSAGTGKSCLLHQF------IENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIW 54
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP---LLI 130
D GQ RS+ YY A + V D F AL L + +P +++
Sbjct: 55 DTAGQERFRSVTRSYYRGAAGALLVYDITSRESFN----ALTNWLTDARTLASPDIVIIL 110
Query: 131 LANKQDLPD 139
+ NK+DL D
Sbjct: 111 VGNKKDLED 119
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-05
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 53 VPTVGLNIG--RIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
+PT+G++ G ++ V N ++ F+DL G P + ++Y++ V+ V D
Sbjct: 30 LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDV----TDR 85
Query: 109 DSKTALEK--------VLRNEDLQGAPLLILANKQDLPD--AVSADE 145
S AL+ + +++ +++ ANK DL AVS DE
Sbjct: 86 QSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE 132
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 9e-05
Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 30/195 (15%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GR-IEVSNS---KLV 71
+F ++++G GK++LL++ EG + PTVG++ R IE+ KL
Sbjct: 2 QFRLIVIGDSTVGKSSLLKRF------TEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQ 55
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG-APLLI 130
WD GQ RSI YY + V+ V D FE LE+ + +Q P+ I
Sbjct: 56 LWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSH--IQPHRPVFI 113
Query: 131 L-ANKQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EV 183
L +K DL V+ +E LA+ L +K + S G ++E+ E L E+
Sbjct: 114 LVGHKCDLESQRQVTREEAEKLAKDLGMK--------YIETSARTGDNVEEAFELLTQEI 165
Query: 184 MERSKRTEMLRARAG 198
ER KR E L A G
Sbjct: 166 YERIKRGE-LCALDG 179
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 1e-04
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDL 75
+++LG GK+ L+E+ ++G P + + T L + + E + FWD
Sbjct: 3 IILLGDSAVGKSKLVERFL-----MDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDT 56
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ +++ YY +AHA + V D +++ E+ LR E P +++ANK
Sbjct: 57 AGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEE-LR-EYRPEIPCIVVANKI 114
Query: 136 DLPDAVS 142
DL +V+
Sbjct: 115 DLDPSVT 121
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 1e-04
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 33/177 (18%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNS----KLVFW 73
V+++G GK++++++ V+G+ T+G++ +I + S +L+ W
Sbjct: 3 VIVVGNGNVGKSSMIQRF------VKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLW 56
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFV---IDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
D GQ +I + YY A A + V D E K +E + P+++
Sbjct: 57 DTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD-----IPMVL 111
Query: 131 LANKQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
+ K DL D ++ +E LA+ L L S D F + E E+L E
Sbjct: 112 VQTKIDLLDQAVITNEEAEALAKRLQLP--------LFRTSVKDDFNVTELFEYLAE 160
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 1e-04
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 22/127 (17%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
++++G GKT LL Y+ P VPTV N + K L WD
Sbjct: 3 IVVVGDGAVGKTCLL----ISYTT--NKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTA 56
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR------NEDLQGAPLLI 130
GQ + Y + VF++ C S DS ++ E V P+++
Sbjct: 57 GQEEYDRLRPLSYPQTD--VFLL---CFSV--DSPSSFENVKTKWYPEIKHYCPNVPIIL 109
Query: 131 LANKQDL 137
+ K DL
Sbjct: 110 VGTKIDL 116
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 3e-04
Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 35/170 (20%)
Query: 22 ILGIDKAGKTTLL-----EKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
I G GK++LL + + V S + G D + L +V D
Sbjct: 2 IFGRPNVGKSSLLNALLGQNVGIV-SPIPGTTRDPVRKEWELLPLG------PVVLIDT- 53
Query: 77 GQPGL-----------RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
PGL + + A V+ V+D+ + E L +G
Sbjct: 54 --PGLDEEGGLGRERVEEARQVA-DRADLVLLVVDSD------LTPVEEEAKLGLLRERG 104
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175
P+L++ NK DL ++E + K AVS G GI E
Sbjct: 105 KPVLLVLNKIDLVPE--SEEEELLRERKLELLPDLPVIAVSALPGEGIDE 152
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 3e-04
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 28/140 (20%)
Query: 18 FHVLILGIDKAGKTTLLEKL--KSVYSNVEGLPPDRIVPTVG-LNIGRIEVSNSKLVFWD 74
F + ++G AGK+TLL L + V L P + PT + + R + +V D
Sbjct: 1 FLLAVVGEFSAGKSTLLNALLGEEV------L-PTGVTPTTAVITVLRYGLLK-GVVLVD 52
Query: 75 LGGQPGLRS-------IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP 127
PGL S I E + A AV+FV+ A P E + L+++L+ G
Sbjct: 53 T---PGLNSTIEHHTEITESFLPRADAVIFVLSADQPLT-ESEREFLKEILKWS---GKK 105
Query: 128 LLILANKQDLPDAVSADELA 147
+ + NK DL +S +EL
Sbjct: 106 IFFVLNKIDL---LSEEELE 122
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 5e-04
Identities = 40/138 (28%), Positives = 52/138 (37%), Gaps = 21/138 (15%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG------RIEVSNS--K 69
F +I+G GK+ LL + R P L IG I + N K
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTD----------KRFQPVHDLTIGVEFGARMITIDNKPIK 56
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L WD GQ RSI YY A + V D F + LE R ++
Sbjct: 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIM 115
Query: 130 ILANKQDLPD--AVSADE 145
++ NK DL AVS +E
Sbjct: 116 LIGNKCDLAHRRAVSTEE 133
|
Length = 210 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 5e-04
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 32/172 (18%)
Query: 17 EFHVLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVG-------LNIGRIEVSNS 68
+F +++LG GK++++ + K+ +S + T+G +N+ V
Sbjct: 1 QFKLVLLGDSSVGKSSIVLRFVKNEFS-------ENQESTIGAAFLTQTVNLDDTTV--- 50
Query: 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
K WD GQ RS+ YY A A + V D FE +K+ + K L+ G P
Sbjct: 51 KFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWV-KELQE---HGPPN 106
Query: 129 LILA---NKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175
+++A NK DL VS +E Y D L +F S G + E
Sbjct: 107 IVIALAGNKADLESKRQVSTEEAQEYADENGL-----LFMETSAKTGENVNE 153
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 5e-04
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 26/169 (15%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP----TVGLNIGR--IEVSNS--K 69
F +I+G GK+ LL + + + T+G+ G IEV+ K
Sbjct: 3 FKYIIIGDMGVGKSCLLHQFTE----------KKFMADCPHTIGVEFGTRIIEVNGQKIK 52
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L WD GQ R++ YY A + V D S + + L + L
Sbjct: 53 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFL 112
Query: 130 ILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 176
I NK DL V+ +E ++ D L +F S G ++++
Sbjct: 113 I-GNKADLEAQRDVTYEEAKQFADENGL-----LFLECSAKTGENVEDA 155
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 32/185 (17%)
Query: 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW----- 73
+ +LG GK++L + VEG + PT IE + SK++ +
Sbjct: 3 KIAVLGSRSVGKSSLTVQF------VEGHFVESYYPT-------IENTFSKIITYKGQEY 49
Query: 74 -----DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
D GQ + +KY H + V FE K +K+L + P+
Sbjct: 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI 109
Query: 129 LILANKQDLPD--AVSADELARYLDLKKLDERV-CMFEAVSGYDGFGIKESVEWLVEVME 185
+++ NK DL VSA+E KKL E F S + ++E+ E L+E +E
Sbjct: 110 VLVGNKSDLHMERQVSAEE------GKKLAESWGAAFLESSAKENENVEEAFELLIEEIE 163
Query: 186 RSKRT 190
+ +
Sbjct: 164 KVENP 168
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 8e-04
Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 13/179 (7%)
Query: 20 VLILGIDKAGKTTLLEKL---KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
V+I+G GKT+L+E+ + + D + TV L +I +L WD
Sbjct: 3 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI-----RLQIWDTA 57
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ SI YY A ++ V D F+D + K++ + A LL++ NK D
Sbjct: 58 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM-KMIDKYASEDAELLLVGNKLD 116
Query: 137 LPDAVSADELARYLDLKKLDERVCM-FEAVSGYDGFGIKESVEWLVEVMERSKRTEMLR 194
+ E+ R K + M F S D F + E LV+ + + ++LR
Sbjct: 117 CE---TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILR 172
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.001
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 18 FHVLILGIDKAGKTTLLEKL----KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
V I+G GK+TL +L ++ S+ G+ DRI G E + +
Sbjct: 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRI-------YGDAEWLGREFILI 56
Query: 74 DLGG------QPGLRSIWEKYY---EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
D GG I E+ EEA ++FV+D D + A K+LR
Sbjct: 57 DTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIA--KILRR---S 111
Query: 125 GAPLLILANKQDLPDA 140
P++++ NK D A
Sbjct: 112 KKPVILVVNKIDNLKA 127
|
Length = 444 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.002
Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 33/176 (18%)
Query: 29 GKTTLLEKL----KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84
GK+TL +L ++ S+ G+ DR G E + + D GG
Sbjct: 11 GKSTLFNRLTGKRDAIVSDTPGVTRDRK-------YGDAEWGGREFILIDTGGIEEDDDG 63
Query: 85 WEKYY--------EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
+K EEA ++FV+D ED + A K LR G P++++ANK D
Sbjct: 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIA--KWLRK---SGKPVILVANKID 118
Query: 137 LPDAVS-ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTE 191
+ A E L + +S G GI + ++ ++E++ + E
Sbjct: 119 GKKEDAVAAEFYS-LGFGE------PI-PISAEHGRGIGDLLDAILELLPEEEEEE 166
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.002
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTV-GLNIGRIEV--SNSKLVFW 73
E+ V++LG GK+ L + V G ++ PT+ IEV S S L
Sbjct: 1 EYKVVVLGSGGVGKSALTVQF------VSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEIL 54
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G S+ + Y + + V F+D K ++++R + + P++++ N
Sbjct: 55 DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGN 114
Query: 134 KQDL 137
K DL
Sbjct: 115 KVDL 118
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206666 cd01878, HflX, HflX GTPase family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.002
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL 150
EA ++ V+DA+ P E+ +E+VL+ P++++ NK DL D DE
Sbjct: 120 EADLLLHVVDASDP-DREEQIETVEEVLKELGADDIPIILVLNKIDLLD----DEELEER 174
Query: 151 DLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184
+ V +S G G+ E + E++
Sbjct: 175 LRAGRPDAV----FISAKTGEGLDLLKEAIEELL 204
|
HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.002
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 29/131 (22%)
Query: 19 HVLILGIDKAGKTTLLEKL---KSVY-SNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
V ++G GK+TL+ L K S+ G T +G + +++ D
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVSDYPGT-------TRDPILGVLG-LGRQIILVD 52
Query: 75 LGG----------QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN-EDL 123
G G E EA ++ V+DA+ +D E++L E L
Sbjct: 53 TPGLIEGASEGKGVEGFNRFLEAI-READLILLVVDASEGLTEDD-----EEILEELEKL 106
Query: 124 QGAPLLILANK 134
P++++ NK
Sbjct: 107 PKKPIILVLNK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4) | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.002
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 14/134 (10%)
Query: 20 VLILGIDKAGKTTLLEKLKS-------VYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLV 71
++G GK+ L++ S Y+ G D +V TV + + S+S +L
Sbjct: 3 CAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGC--DLVVKTVPVP----DTSDSVELF 56
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
+D GQ + E +E+ V V D F + + +V + P +++
Sbjct: 57 IFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLV 116
Query: 132 ANKQDLPDAVSADE 145
NK DL D D
Sbjct: 117 GNKCDLTDRREVDA 130
|
RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167 |
| >gnl|CDD|232811 TIGR00073, hypB, hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.003
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 45/194 (23%)
Query: 22 ILGIDKAGKTTLLEKL------KSVYSNVEG-----LPPDRI----VPTVGLNIGRIEVS 66
+ +GKTTL+EKL + + +EG +R+ P + +N G+
Sbjct: 27 FMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHL 86
Query: 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF---VIDAACPSRF---EDSKTALEKVLRN 120
++ +V L E + ++F V + CP+ F E + L V
Sbjct: 87 DAHMVAHAL----------EDLPLDDIDLLFIENVGNLVCPADFDLGEHMRVVLLSVTEG 136
Query: 121 EDLQGAPL----------LILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
+D PL LI+ NK DL +AV D D KK++ + +S G
Sbjct: 137 DD---KPLKYPGMFKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIIL-MSLKTG 192
Query: 171 FGIKESVEWLVEVM 184
G+ E +E+L +
Sbjct: 193 EGLDEWLEFLEGQV 206
|
A GTP hydrolase for assembly of nickel metallocenter of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel. hits scoring 75 and above are safe as orthologs. [SS 1/05/04 I changed the role_ID and process GO from protein folding to to protein modification, since a protein folding role has not been established, but HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.] [Protein fate, Protein modification and repair]. Length = 208 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 0.003
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEVSNSK--LVFW 73
E+ +++LG GK+ L + V+G+ D+ PT+ + + IEV + L
Sbjct: 1 EYKLVVLGSGGVGKSALTVQF------VQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEIL 54
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G ++ + Y + V F D + E++LR +D + P++++ N
Sbjct: 55 DTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGN 114
Query: 134 KQDLPD 139
K DL D
Sbjct: 115 KCDLED 120
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.003
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
VPT G+ V +D+GGQ R W ++ A++F + +
Sbjct: 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE 228
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R ++S E + + +++ NK DL
Sbjct: 229 STNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263
|
Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 |
| >gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.004
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 96 VFVIDAACPSRFEDSKTALEKVLR--NEDLQGAPLLILANKQDLPDAVSADELARYLDLK 153
+ ++D ED KT + L + +L P +++ NK DL D E L+L
Sbjct: 241 LHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELA 299
Query: 154 KLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTE 191
L V +S G G+ E + L E++E ++R E
Sbjct: 300 ALGGPV---FLISAVTGEGLDELLRALWELLEEARREE 334
|
Length = 335 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 204 | |||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.98 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.98 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.98 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.98 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.98 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.97 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.97 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.97 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.97 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.97 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.97 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.97 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.97 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.97 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.97 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.97 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.97 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.97 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.97 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.97 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.97 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.97 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.97 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.97 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.97 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.97 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.97 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.97 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.97 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.97 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.97 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.97 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.97 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.97 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.97 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.97 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.97 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.97 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.97 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.97 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.96 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.96 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.96 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.96 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.96 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.96 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.96 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.96 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.96 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.96 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.96 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.96 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.96 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.96 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.96 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.96 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.96 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.96 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.96 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.96 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.96 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.96 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.96 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.96 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.96 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.96 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.96 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.96 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.96 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.96 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.96 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.96 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.96 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.96 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.96 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.96 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.96 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.96 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.96 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.96 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.96 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.96 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.96 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.96 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.96 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.96 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.96 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.96 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.96 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.95 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.95 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.95 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.95 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.95 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.95 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.95 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.95 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.95 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.95 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.95 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.95 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.95 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.95 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.94 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.94 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.94 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.94 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.94 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.94 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.94 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.94 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.93 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.93 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.93 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.93 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.93 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.92 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.92 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.92 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.92 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.92 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.92 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.91 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.91 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.91 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.91 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.91 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.91 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.91 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.9 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.9 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.9 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.9 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.9 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.9 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.9 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.9 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.9 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.9 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.9 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.89 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.89 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.89 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.89 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.89 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.89 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.89 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.89 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.89 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.89 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.88 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.88 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.88 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.88 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.88 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.88 | |
| PTZ00099 | 176 | rab6; Provisional | 99.88 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.88 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.87 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.87 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.87 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.87 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.87 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.87 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.87 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.87 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.87 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.86 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.86 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.86 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.86 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.86 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.86 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.86 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.86 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.85 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.85 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.85 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.85 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.85 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.85 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.85 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.85 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.85 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.85 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.84 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.84 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.84 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.84 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.83 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.83 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.83 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.83 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.82 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.82 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.82 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.82 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.82 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.82 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.81 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.81 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.81 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.81 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.81 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.81 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.8 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.8 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.79 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.79 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.79 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.79 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.78 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.78 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.78 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.78 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.78 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.77 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.77 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.77 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.77 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.77 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.77 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.77 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.77 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.77 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.77 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.77 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.76 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.75 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.75 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.75 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.75 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.74 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.74 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.74 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.74 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.73 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.71 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.71 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.7 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.7 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.7 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.69 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.69 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.69 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.69 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.68 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.67 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.67 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.67 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.65 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.65 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.64 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.64 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.63 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.63 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.63 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.62 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.62 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.61 | |
| PRK13768 | 253 | GTPase; Provisional | 99.6 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.6 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.59 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.59 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.58 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.57 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.57 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.57 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.56 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.56 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.55 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.53 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.51 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.5 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.49 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.49 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.49 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.48 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.47 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.47 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.46 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.46 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.45 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.45 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.45 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.44 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.44 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 99.43 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.43 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.42 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.4 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.39 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.39 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.37 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.36 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.36 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.35 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.32 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.29 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.27 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.26 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.25 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.24 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.24 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 99.23 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.23 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.21 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.19 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.19 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.18 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.14 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 99.14 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.13 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.13 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.11 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.11 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.07 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.06 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 99.06 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.03 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.96 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 98.96 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 98.96 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.94 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.93 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.93 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.9 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.89 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.89 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.84 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.84 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.82 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.82 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.79 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.78 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.78 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.78 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.77 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.77 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.74 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.74 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.73 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.71 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.67 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.65 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.65 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.65 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.65 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.64 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.64 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.62 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.6 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.57 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.52 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.51 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.51 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.5 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.47 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.46 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.45 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.44 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.44 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.44 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.43 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.41 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.4 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.39 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.39 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.38 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.38 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.37 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.32 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.32 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.31 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.28 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.28 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.27 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.21 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.19 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.18 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.18 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.17 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 98.16 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 98.16 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.16 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.15 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.15 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 98.15 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.14 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 98.11 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.11 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.05 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.03 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.03 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.96 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 97.96 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.95 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.94 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.94 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.93 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.89 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.84 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.82 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.82 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.82 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.81 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.8 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.79 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.77 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.77 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 97.76 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.75 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.73 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.68 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.67 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.67 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.65 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.64 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 97.64 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.63 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.61 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.61 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.6 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.6 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.58 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.57 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.57 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.56 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.54 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.53 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.53 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.53 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.52 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.48 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.46 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.46 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.45 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 97.44 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.44 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 97.44 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.42 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 97.42 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 97.41 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 97.41 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.41 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.4 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.37 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.36 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.36 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 97.35 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.35 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.34 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 97.34 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 97.34 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.34 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.31 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.3 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.3 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.3 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.29 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 97.29 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.27 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.26 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 97.26 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 97.26 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 97.26 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 97.25 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.25 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 97.24 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 97.24 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.24 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.24 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 97.24 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.24 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 97.23 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 97.23 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 97.23 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.23 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 97.22 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 97.22 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 97.22 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.22 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.21 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.21 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 97.21 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 97.21 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 97.21 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 97.21 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 97.21 |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=199.69 Aligned_cols=179 Identities=35% Similarity=0.677 Sum_probs=145.2
Q ss_pred ChhHHHHHHhhhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
|+.++..++.....++.+||+++|..|||||||++++.. +... .+.+|.+.....+......+.+||+||++.
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~ 73 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc------CCCc-cccCCcceeEEEEEECCEEEEEEECCCCHH
Confidence 555555554444567789999999999999999999953 1111 234666766666777888999999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccccccee
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (204)
+...+..+++++|++|+|+|+++++++.....++..++......++|+++|+||+|+.+....+++.+.++........+
T Consensus 74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~ 153 (181)
T PLN00223 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (181)
T ss_pred HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCce
Confidence 99999999999999999999999999998888888877654446799999999999988888888888877544434455
Q ss_pred EEEeecccCCCChHHHHHHHHHHHHh
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 161 ~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
.++++||++|+|++++|++|.+.+..
T Consensus 154 ~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 154 YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 67799999999999999999988754
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=196.63 Aligned_cols=165 Identities=26% Similarity=0.454 Sum_probs=143.8
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE----EEEeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
-.+||+++|+.|+|||+|+.|+ ..+...+.+..|+++.+.. ++...+++++|||+||++++..+.+++++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf------~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRF------KDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhh------ccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 4689999999999999999999 4577888888999988774 44467899999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeE-EEeeccc
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCM-FEAVSGY 168 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~ 168 (204)
+|+||+|||+++.+||..+..|+..+-.+.. .++|.++|+||+|+.+ ..+.++.+.+.. ..+.+ ++++||+
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~-----~~~~~~f~ETSAK 155 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFAD-----ELGIPIFLETSAK 155 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHHH-----hcCCcceeecccC
Confidence 9999999999999999999999999988765 6789999999999987 566777766665 44455 9999999
Q ss_pred CCCChHHHHHHHHHHHHhchhHHH
Q 028776 169 DGFGIKESVEWLVEVMERSKRTEM 192 (204)
Q Consensus 169 ~~~~v~~l~~~i~~~i~~~~~~~~ 192 (204)
++.||++.|..+...+.++.....
T Consensus 156 ~~~NVe~~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKELKQRKGLHV 179 (205)
T ss_pred CccCHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999977665433
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=196.85 Aligned_cols=179 Identities=36% Similarity=0.680 Sum_probs=144.4
Q ss_pred ChhHHHHHHhhhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
|..++..++...+.++.+||+++|++|||||||++++.. +... .+.+|.+..+..+...+..+.+|||||++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~------~~~~-~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~ 73 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKL------GEVV-TTIPTIGFNVETVEYKNLKFTMWDVGGQDK 73 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhc------CCcc-ccCCccccceEEEEECCEEEEEEECCCCHh
Confidence 444555666666778889999999999999999999943 1111 133566666666777888999999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccccccee
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (204)
+...+..+++++|++|+|+|+++++++.....++..++......++|+++|+||.|+.+....+++...++........+
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~ 153 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNW 153 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcE
Confidence 99999999999999999999999999998888888876553335789999999999987667777777777554444556
Q ss_pred EEEeecccCCCChHHHHHHHHHHHHh
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 161 ~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
+++++||++|.|++++|++|.+.+.+
T Consensus 154 ~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 154 YIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred EEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 78899999999999999999987754
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=192.57 Aligned_cols=166 Identities=27% Similarity=0.412 Sum_probs=146.0
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EEEe--CcEEEEEEcCCCcchHHHHHHhcc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
...+||+++|..++|||||+.|+ ..+.+.+...+|++..+.. +..+ .+++.+|||+|++++..+.+.+++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rf------vk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyR 76 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRF------VKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYR 76 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhh------hhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceec
Confidence 46799999999999999999999 5566777678888877765 3333 478999999999999999999999
Q ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeeccc
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
+++++|+|||+++.+||..+..|+..+-.... +++-+-+|+||+|+.+ ++..++.+.+.. ..+..|+++||+
T Consensus 77 gA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe-----~~gll~~ETSAK 150 (200)
T KOG0092|consen 77 GANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAE-----SQGLLFFETSAK 150 (200)
T ss_pred CCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHH-----hcCCEEEEEecc
Confidence 99999999999999999999999999988765 7788888999999987 888999999987 678899999999
Q ss_pred CCCChHHHHHHHHHHHHhchhHHH
Q 028776 169 DGFGIKESVEWLVEVMERSKRTEM 192 (204)
Q Consensus 169 ~~~~v~~l~~~i~~~i~~~~~~~~ 192 (204)
+|.|++++|..|.+.+........
T Consensus 151 Tg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 151 TGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred cccCHHHHHHHHHHhccCcccccc
Confidence 999999999999999976665543
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=192.84 Aligned_cols=163 Identities=36% Similarity=0.705 Sum_probs=134.6
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
++.+.+||+++|++|||||||++++... .. ..+.++.+.....+..+...+.+|||||++.+...+..+++++
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~------~~-~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a 77 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLG------QS-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGT 77 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccC------CC-ccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccC
Confidence 4467899999999999999999999531 11 1234566666666667788999999999999998999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
|++++|+|++++.+|.....++..++......++|+++|+||+|+.+....+++...++.........+++++||++|.|
T Consensus 78 ~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~g 157 (168)
T cd04149 78 QGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 157 (168)
T ss_pred CEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCC
Confidence 99999999999999999999988887654445789999999999987777888888876544444456799999999999
Q ss_pred hHHHHHHHHH
Q 028776 173 IKESVEWLVE 182 (204)
Q Consensus 173 v~~l~~~i~~ 182 (204)
++++|++|.+
T Consensus 158 v~~~~~~l~~ 167 (168)
T cd04149 158 LYEGLTWLSS 167 (168)
T ss_pred hHHHHHHHhc
Confidence 9999999864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-32 Score=192.54 Aligned_cols=165 Identities=35% Similarity=0.712 Sum_probs=136.3
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
..+..+||+++|++|||||||++++.. +.. ..+.+|++..+.........+.+|||||+..+...+..+++++
T Consensus 9 ~~~~~~ki~l~G~~~~GKTsL~~~~~~------~~~-~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a 81 (175)
T smart00177 9 FGNKEMRILMVGLDAAGKTTILYKLKL------GES-VTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNT 81 (175)
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc------CCC-CCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCC
Confidence 446689999999999999999999942 111 1234666766666677788999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
|++|+|+|++++++++....++..++......+.|+++|+||+|+.+....+++...++........+.++++||++|.|
T Consensus 82 d~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (175)
T smart00177 82 QGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDG 161 (175)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCC
Confidence 99999999999999999999998887654445789999999999987777778777776544444556788999999999
Q ss_pred hHHHHHHHHHHH
Q 028776 173 IKESVEWLVEVM 184 (204)
Q Consensus 173 v~~l~~~i~~~i 184 (204)
++++|++|.+.+
T Consensus 162 v~e~~~~l~~~~ 173 (175)
T smart00177 162 LYEGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=189.83 Aligned_cols=166 Identities=42% Similarity=0.735 Sum_probs=135.8
Q ss_pred hhhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhc
Q 028776 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
...+..+.++|+++|++|||||||++++.+. ....+.++.++....+..+...+.+|||||++.+...+..++
T Consensus 7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~-------~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~ 79 (173)
T cd04154 7 KQKLKEREMRILILGLDNAGKTTILKKLLGE-------DIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYF 79 (173)
T ss_pred hhhcCCCccEEEEECCCCCCHHHHHHHHccC-------CCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence 3445667899999999999999999999653 112344566655666667788899999999999988899999
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+++|++++|+|++++.+|.....|+..++......+.|+++|+||+|+.+....+++...++.........+++++||++
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04154 80 ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVT 159 (173)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 99999999999999999998888888887654446799999999999987667777777776443345667899999999
Q ss_pred CCChHHHHHHHHH
Q 028776 170 GFGIKESVEWLVE 182 (204)
Q Consensus 170 ~~~v~~l~~~i~~ 182 (204)
|.|++++|+++.+
T Consensus 160 g~gi~~l~~~l~~ 172 (173)
T cd04154 160 GEGLLQGIDWLVD 172 (173)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=186.88 Aligned_cols=158 Identities=37% Similarity=0.725 Sum_probs=128.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 97 (204)
+||+++|.+|||||||++++.. +... .+.++++.....+......+.+||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999942 1111 24456666666677788899999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHHHH
Q 028776 98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 177 (204)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 177 (204)
|+|++++++|+....++..++......+.|+++++||+|+.+....+++...+...........++++||++|.|++++|
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 99999999999999888888765444568999999999997765666666666533333445678899999999999999
Q ss_pred HHHHH
Q 028776 178 EWLVE 182 (204)
Q Consensus 178 ~~i~~ 182 (204)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=186.18 Aligned_cols=168 Identities=37% Similarity=0.678 Sum_probs=135.6
Q ss_pred HHhhhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHH
Q 028776 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEK 87 (204)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 87 (204)
+.+.....+.++|+++|++|+|||||++++.... .. ...++.+..+.....+...+.+||+||+..+...+..
T Consensus 6 ~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~------~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 78 (174)
T cd04153 6 LWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGE------VV-HTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNT 78 (174)
T ss_pred HHHHhcCCCccEEEEECCCCCCHHHHHHHHccCC------CC-CcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHH
Confidence 3344444568999999999999999999995421 11 2345666666677778899999999999999999999
Q ss_pred hcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecc
Q 028776 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
+++++|++++|+|+++++++.....++..++......++|+++++||+|+....+.+++...+.........++++++||
T Consensus 79 ~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA 158 (174)
T cd04153 79 YYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCA 158 (174)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEeccc
Confidence 99999999999999999989888888888876654467999999999999776667777777664433344568999999
Q ss_pred cCCCChHHHHHHHHH
Q 028776 168 YDGFGIKESVEWLVE 182 (204)
Q Consensus 168 ~~~~~v~~l~~~i~~ 182 (204)
++|.|+++++++|.+
T Consensus 159 ~~g~gi~e~~~~l~~ 173 (174)
T cd04153 159 LTGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.2e-31 Score=185.82 Aligned_cols=164 Identities=60% Similarity=1.055 Sum_probs=136.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 98 (204)
+|+++|++|||||||++++.+......+.....+.++.+.....+.+++..+.+|||||+..+...+..+++++|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 58999999999999999997755443344455667788877777888889999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccc--cccceeEEEeecccCCCChHHH
Q 028776 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK--LDERVCMFEAVSGYDGFGIKES 176 (204)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l 176 (204)
+|+.+++++.....++..+.......++|+++++||+|+.......++...+.... ......+++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888887765556799999999999988777777777765332 2235678999999999999999
Q ss_pred HHHHHH
Q 028776 177 VEWLVE 182 (204)
Q Consensus 177 ~~~i~~ 182 (204)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999864
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-31 Score=190.54 Aligned_cols=159 Identities=24% Similarity=0.391 Sum_probs=125.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEEe--CcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+.|+++|..|||||||+.++.. +.....+.+|++..+. .+..+ .+.+.+|||+|++.+...+..+++++|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~------~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad 74 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTD------DTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 74 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHh------CCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCC
Confidence 4799999999999999999953 3444455566654443 34443 478899999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++|+|||+++++||+.+..|+..+... ...+.|+|+|+||+|+.. ....++..++... ..+..++++||++|.
T Consensus 75 ~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~----~~~~~~~etSAktg~ 149 (202)
T cd04120 75 GIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQ----ITGMRFCEASAKDNF 149 (202)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCEEEEecCCCCC
Confidence 999999999999999999988765444 336799999999999964 4444555444431 123679999999999
Q ss_pred ChHHHHHHHHHHHHhc
Q 028776 172 GIKESVEWLVEVMERS 187 (204)
Q Consensus 172 ~v~~l~~~i~~~i~~~ 187 (204)
|++++|+++.+.+...
T Consensus 150 gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 150 NVDEIFLKLVDDILKK 165 (202)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999888654
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-31 Score=185.20 Aligned_cols=168 Identities=24% Similarity=0.369 Sum_probs=142.6
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EEE--eCcEEEEEEcCCCcchHHHHHHhcc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
...+||+++|++|||||+++.++. .......+..|+++.+.. +.. ..+.+++|||+||+.+.+....+++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~------d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr 83 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFS------DDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR 83 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhh------hccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh
Confidence 456999999999999999999994 466777777888887763 333 4567899999999999999999999
Q ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeeccc
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
+++++++|||+.+..||+++..|+..+-.+.. +..|.++|+||+|+.. .++.+....+.. ..+.+|+++||+
T Consensus 84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~-----e~G~~F~EtSAk 157 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKERGEALAR-----EYGIKFFETSAK 157 (207)
T ss_pred hcCeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHHHHHHHH-----HhCCeEEEcccc
Confidence 99999999999999999999998887776654 6899999999999977 566666666665 567899999999
Q ss_pred CCCChHHHHHHHHHHHHhchhHHHHH
Q 028776 169 DGFGIKESVEWLVEVMERSKRTEMLR 194 (204)
Q Consensus 169 ~~~~v~~l~~~i~~~i~~~~~~~~~~ 194 (204)
.|.||++.|..+.+.+.........+
T Consensus 158 ~~~NI~eaF~~La~~i~~k~~~~~~~ 183 (207)
T KOG0078|consen 158 TNFNIEEAFLSLARDILQKLEDAELE 183 (207)
T ss_pred CCCCHHHHHHHHHHHHHhhcchhhhc
Confidence 99999999999999998766554433
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=183.54 Aligned_cols=164 Identities=23% Similarity=0.372 Sum_probs=138.2
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EEE--eCcEEEEEEcCCCcchHHHHHHhcc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
.+.+||+++|+.++||||||.+++. ......|..|+++++.- +.. ..+++++|||+||+++....+.+++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~y------d~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~R 93 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMY------DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 93 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHH------hhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhcc
Confidence 4569999999999999999999964 55667777888887763 333 4568899999999999999999999
Q ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeEEEeeccc
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
++.++|+|||+++..||+...+|+..+....+..++-+++|+||.||.+. ...+|-.... ...+..|+++||+
T Consensus 94 ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kA-----kel~a~f~etsak 168 (221)
T KOG0094|consen 94 DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKA-----KELNAEFIETSAK 168 (221)
T ss_pred CCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHH-----HHhCcEEEEeccc
Confidence 99999999999999999999999999999988667899999999999873 3334443333 3455689999999
Q ss_pred CCCChHHHHHHHHHHHHhchh
Q 028776 169 DGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 169 ~~~~v~~l~~~i~~~i~~~~~ 189 (204)
.|+||..+|..|...+.....
T Consensus 169 ~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred CCCCHHHHHHHHHHhccCccc
Confidence 999999999999988876654
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=184.20 Aligned_cols=163 Identities=38% Similarity=0.677 Sum_probs=133.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 98 (204)
||+++|.+|||||||++++.+. ... .+.+|.+.....+.++...+.+|||||+..+...+..+++++|++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~------~~~-~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD------EFM-QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC------CCC-CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence 6899999999999999999652 111 245566666666777888999999999999988999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccc-ccceeEEEeecccCCCChHHHH
Q 028776 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDGFGIKESV 177 (204)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~ 177 (204)
+|++++++++....|+..++......+.|+++|+||+|+.+....+++...+..... ......++++||++|.|++++|
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999999999998886644456899999999999877777877777653322 1224578899999999999999
Q ss_pred HHHHHHHHhch
Q 028776 178 EWLVEVMERSK 188 (204)
Q Consensus 178 ~~i~~~i~~~~ 188 (204)
++|.+.+.+..
T Consensus 154 ~~l~~~~~~~~ 164 (169)
T cd04158 154 DWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHhhcc
Confidence 99988776543
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=187.47 Aligned_cols=160 Identities=22% Similarity=0.363 Sum_probs=128.3
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE--eCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
..+||+++|..|||||||+.++.. +.....+.++.+..+. .+.. ..+.+.+|||+|++.+...+..++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ 78 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD------GSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRG 78 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 458999999999999999999964 2233333344443332 2333 34778999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|||++++.||+.+..|+..+.... ++.|+|+|+||+|+.+ ..+.++...+.. ..+.+++++||++
T Consensus 79 ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~-----~~~~~~~e~SAk~ 151 (189)
T cd04121 79 AQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAE-----RNGMTFFEVSPLC 151 (189)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHH-----HcCCEEEEecCCC
Confidence 999999999999999999999998886654 5799999999999965 456666666664 3456899999999
Q ss_pred CCChHHHHHHHHHHHHhch
Q 028776 170 GFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~~ 188 (204)
|.||+++|+++.+.+....
T Consensus 152 g~~V~~~F~~l~~~i~~~~ 170 (189)
T cd04121 152 NFNITESFTELARIVLMRH 170 (189)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999998776443
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=179.94 Aligned_cols=170 Identities=23% Similarity=0.336 Sum_probs=142.0
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee----EEEEeCcEEEEEEcCCCcchHHHHHHhcc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
...+|++++|+.|+|||+|+.+++. .++......|+++.++ .++...+++++|||+|++.+.+....+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~------krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr 77 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTD------KRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYR 77 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhc------cCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhc
Confidence 3568999999999999999999965 3333344456666655 34556788999999999999999999999
Q ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeeccc
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
++-++++|||+++.+||..+..|+.++.++.. +++-+++++||+|+.. +++.+|...+.. ..++.++++||+
T Consensus 78 ~a~GalLVydit~r~sF~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~-----ehgLifmETSak 151 (216)
T KOG0098|consen 78 GAAGALLVYDITRRESFNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEARREVSKEEGEAFAR-----EHGLIFMETSAK 151 (216)
T ss_pred cCcceEEEEEccchhhHHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhccccccHHHHHHHHH-----HcCceeehhhhh
Confidence 99999999999999999999999999987753 7899999999999975 666777777665 677889999999
Q ss_pred CCCChHHHHHHHHHHHHhchhHHHHHhh
Q 028776 169 DGFGIKESVEWLVEVMERSKRTEMLRAR 196 (204)
Q Consensus 169 ~~~~v~~l~~~i~~~i~~~~~~~~~~~~ 196 (204)
+++||+|.|..+...+.+..+....+..
T Consensus 152 t~~~VEEaF~nta~~Iy~~~q~g~~~~~ 179 (216)
T KOG0098|consen 152 TAENVEEAFINTAKEIYRKIQDGVFDDI 179 (216)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999877665444433
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=184.22 Aligned_cols=160 Identities=21% Similarity=0.295 Sum_probs=124.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-EEEE--eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
.+||+++|.+|||||||++++.. +.....+.++++..+. .+.. ....+.+|||||++.+...+..+++.+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d 75 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFIS------HSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGE 75 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHh------CCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCC
Confidence 57999999999999999999954 2233334445443332 2233 3467889999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|||++++.||..+..|+..+.......++|+++|+||+|+.+ ..+.++...... ..+.+++++||++|.
T Consensus 76 ~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sa~~~~ 150 (172)
T cd04141 76 GFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR-----EFNCPFFETSAALRH 150 (172)
T ss_pred EEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH-----HhCCEEEEEecCCCC
Confidence 9999999999999999988876665543335799999999999865 344445544432 345689999999999
Q ss_pred ChHHHHHHHHHHHHhc
Q 028776 172 GIKESVEWLVEVMERS 187 (204)
Q Consensus 172 ~v~~l~~~i~~~i~~~ 187 (204)
||+++|+++.+.+.+.
T Consensus 151 ~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 151 YIDDAFHGLVREIRRK 166 (172)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887653
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=183.96 Aligned_cols=155 Identities=19% Similarity=0.283 Sum_probs=122.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee---EEEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
+||+++|++|+|||||+.++.. +.....+.+|++..+. .++...+++.+|||+|++.+......+++++|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~ 75 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS------NKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADV 75 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc------CCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcE
Confidence 6899999999999999999954 3344445556554332 123345788999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCeEEEEEeCCCCCCc------------cCHHHHHHHhCcccccccee-
Q 028776 95 VVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDA------------VSADELARYLDLKKLDERVC- 160 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~- 160 (204)
+++|||+++++||+.+ ..|+..+.... .+.|+++|+||+|+.+. .+.++...... ..+.
T Consensus 76 ~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~-----~~~~~ 148 (176)
T cd04133 76 FVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK-----QIGAA 148 (176)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH-----HcCCC
Confidence 9999999999999998 57888776543 47999999999999652 44555555543 2334
Q ss_pred EEEeecccCCCChHHHHHHHHHHHH
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 161 ~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
++++|||++|.||+++|+.+.+.+.
T Consensus 149 ~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 149 AYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred EEEECCCCcccCHHHHHHHHHHHHh
Confidence 6999999999999999999998763
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=182.07 Aligned_cols=175 Identities=34% Similarity=0.548 Sum_probs=140.3
Q ss_pred hhHHHHHHhhh-cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 2 FSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
|.-+.+++.++ ...+.++|+++|.+|||||||++++.+.. . ..+.++.+.....+...+.++.+||+||+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~------~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 73 (184)
T smart00178 1 FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDR------L-AQHQPTQHPTSEELAIGNIKFTTFDLGGHQQ 73 (184)
T ss_pred ChHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCC------C-cccCCccccceEEEEECCEEEEEEECCCCHH
Confidence 34566777743 23778999999999999999999996421 1 1123444445556667788999999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccc-----
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL----- 155 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----- 155 (204)
+...+..++.++|++++|+|+++++++.....++..++......++|+++|+||+|+....+.+++...++....
T Consensus 74 ~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~ 153 (184)
T smart00178 74 ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKG 153 (184)
T ss_pred HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccccc
Confidence 999999999999999999999999888888888888776544467899999999999887888888888874432
Q ss_pred --ccceeEEEeecccCCCChHHHHHHHHHH
Q 028776 156 --DERVCMFEAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 156 --~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
......+++|||++|.|++++++||.+.
T Consensus 154 ~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 154 KVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 1246679999999999999999999764
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=185.60 Aligned_cols=162 Identities=25% Similarity=0.410 Sum_probs=127.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEEe---CcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS---NSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
+||+++|++|||||||++++.+ +.....+.++++.++. .+..+ ...+.+|||||++.+...+..+++++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~------~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a 74 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVH------GIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGA 74 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCC
Confidence 6899999999999999999964 2333445566654433 23333 56789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcC---CCCCCeEEEEEeCCCCC--CccCHHHHHHHhCccccccceeEEEeecc
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLP--DAVSADELARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
|++++|+|++++++|+.+..|+..+.... ...++|+|+|+||+|+. .....+++....... ...+++++||
T Consensus 75 ~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sa 150 (201)
T cd04107 75 VGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSA 150 (201)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeC
Confidence 99999999999999999988887765432 23578999999999997 355666666666522 1257999999
Q ss_pred cCCCChHHHHHHHHHHHHhchh
Q 028776 168 YDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 168 ~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
++|.|++++|+++.+.+.....
T Consensus 151 k~~~~v~e~f~~l~~~l~~~~~ 172 (201)
T cd04107 151 KEGINIEEAMRFLVKNILANDK 172 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHhch
Confidence 9999999999999998866544
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=181.55 Aligned_cols=168 Identities=42% Similarity=0.805 Sum_probs=147.9
Q ss_pred hhhc-CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHh
Q 028776 10 KYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKY 88 (204)
Q Consensus 10 ~~~~-~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 88 (204)
+... .++.++|+++|..||||||+++++.. +. .....+|.+.+...+.+.+..+.+||.+|+..+...|..+
T Consensus 6 ~~~~~~~~~~~ililGl~~sGKTtll~~l~~------~~-~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y 78 (175)
T PF00025_consen 6 SKLKSKKKEIKILILGLDGSGKTTLLNRLKN------GE-ISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSY 78 (175)
T ss_dssp HHCTTTTSEEEEEEEESTTSSHHHHHHHHHS------SS-EEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGG
T ss_pred HHhcccCcEEEEEEECCCccchHHHHHHhhh------cc-ccccCcccccccceeeeCcEEEEEEeccccccccccceee
Confidence 3334 48999999999999999999999953 11 1226678899999999999999999999999999999999
Q ss_pred cccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccc-cceeEEEeecc
Q 028776 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD-ERVCMFEAVSG 167 (204)
Q Consensus 89 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa 167 (204)
+.++|++|||+|+++++.+.+....+..++......++|+++++||.|+.+....+++...+...... ...+.++.|||
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa 158 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSA 158 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeec
Confidence 99999999999999999999999999999887666789999999999999988999999998866664 67788999999
Q ss_pred cCCCChHHHHHHHHHHH
Q 028776 168 YDGFGIKESVEWLVEVM 184 (204)
Q Consensus 168 ~~~~~v~~l~~~i~~~i 184 (204)
.+|+|+.+.++||.+.+
T Consensus 159 ~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 159 KTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTTBTHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHhcC
Confidence 99999999999999865
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-30 Score=184.22 Aligned_cols=166 Identities=22% Similarity=0.293 Sum_probs=128.0
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee---EEEEeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
.+.+||+++|.+|||||||++++.+ +.....+.++.+..+. .++.....+.+|||||++.+...+..++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~ 76 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQ------NHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRT 76 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------CCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhc
Confidence 3579999999999999999999964 2222334444443332 133345578899999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|+|++++++|+.+..|+..+.......+.|+++|+||+|+... ....+...... ....+++++||++
T Consensus 77 ~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~Sak~ 151 (189)
T PTZ00369 77 GQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-----SFGIPFLETSAKQ 151 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HhCCEEEEeeCCC
Confidence 9999999999999999999999988876654467899999999998642 33334444332 2245799999999
Q ss_pred CCChHHHHHHHHHHHHhchhHH
Q 028776 170 GFGIKESVEWLVEVMERSKRTE 191 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~~~~~ 191 (204)
|.|++++|+++.+.+.+.....
T Consensus 152 ~~gi~~~~~~l~~~l~~~~~~~ 173 (189)
T PTZ00369 152 RVNVDEAFYELVREIRKYLKED 173 (189)
T ss_pred CCCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999998887654443
|
|
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=181.96 Aligned_cols=160 Identities=21% Similarity=0.365 Sum_probs=126.6
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EEE------------eCcEEEEEEcCCCcch
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV------------SNSKLVFWDLGGQPGL 81 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------~~~~~~~~D~~g~~~~ 81 (204)
..+||+++|++|||||||++++.+ +.....+.++++..+.. +.. ....+.+|||||++.+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 76 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTD------NKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF 76 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc------CCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH
Confidence 358999999999999999999954 33334445555544432 222 2367899999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccce
Q 028776 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERV 159 (204)
Q Consensus 82 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~ 159 (204)
...+..+++++|++++|+|++++++|..+..|+..+.......+.|+++|+||+|+.+ ....++...... ..+
T Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~ 151 (180)
T cd04127 77 RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYG 151 (180)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcC
Confidence 9999999999999999999999999999999998887654445789999999999965 344555555543 234
Q ss_pred eEEEeecccCCCChHHHHHHHHHHHHh
Q 028776 160 CMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 160 ~~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
.+++++||++|.|++++|+++.+.+.+
T Consensus 152 ~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 152 IPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 679999999999999999999987753
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=182.39 Aligned_cols=157 Identities=21% Similarity=0.318 Sum_probs=123.7
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee---EEEEeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
...+||+++|+.|+|||||+.++.. +.....+.+|++..+. .+....+.+.+|||+|++.+......++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~------~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ 76 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 76 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHh------CCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCC
Confidence 4578999999999999999999954 3333444555543332 233345678999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCeEEEEEeCCCCCC--------------ccCHHHHHHHhCccccc
Q 028776 92 AHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLD 156 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~ 156 (204)
+|++++|||+++++||+.+ ..|+..+.... ++.|+|+|+||+|+.+ ..+.++...+..
T Consensus 77 ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~----- 149 (182)
T cd04172 77 SDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAK----- 149 (182)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHH-----
Confidence 9999999999999999997 67877776544 5799999999999853 245555555554
Q ss_pred cce-eEEEeecccCCCC-hHHHHHHHHHHH
Q 028776 157 ERV-CMFEAVSGYDGFG-IKESVEWLVEVM 184 (204)
Q Consensus 157 ~~~-~~~~~~Sa~~~~~-v~~l~~~i~~~i 184 (204)
..+ .+|++|||++|.| |+++|..+...+
T Consensus 150 ~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 150 QIGAATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred HcCCCEEEECCcCCCCCCHHHHHHHHHHHH
Confidence 344 4899999999998 999999998864
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=179.25 Aligned_cols=158 Identities=22% Similarity=0.354 Sum_probs=123.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee----EEEEeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|++|||||||++++... .....+.++++..+. .+......+.+|||||++.+...+..+++++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 75 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEK------KFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGA 75 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC------CCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 379999999999999999999642 223334444444432 1223346789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|++++++|+.+..|+..+..... .+.|+++|+||+|+... ...++...... ....+++++||++|
T Consensus 76 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 149 (166)
T cd04122 76 AGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFLECSAKTG 149 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence 999999999999999999999887755432 57899999999999653 44555555543 23468999999999
Q ss_pred CChHHHHHHHHHHHHh
Q 028776 171 FGIKESVEWLVEVMER 186 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~~ 186 (204)
.|++++|.++.+.+.+
T Consensus 150 ~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 150 ENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999987743
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=184.08 Aligned_cols=159 Identities=20% Similarity=0.314 Sum_probs=121.4
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee---EEEEeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
..+||+++|+.|||||||+.++.. +.....+.+|++..+. .++...+.+.+|||+|++.+...+..+++++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a 75 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTT------NAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQT 75 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHh------CCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCC
Confidence 458999999999999999999954 3334445566654433 2333457789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHH-HHHHHHhcCCCCCCeEEEEEeCCCCCCccC--------------HHHHHHHhCcccccc
Q 028776 93 HAVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAVS--------------ADELARYLDLKKLDE 157 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~ 157 (204)
|++|+|||+++++||+.+.. |...+.... .++|+++|+||+|+.+... .++..... ..
T Consensus 76 ~~~ilvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a-----~~ 148 (191)
T cd01875 76 NVFIICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALA-----KQ 148 (191)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHH-----HH
Confidence 99999999999999999974 655554432 5799999999999965321 12222222 12
Q ss_pred ce-eEEEeecccCCCChHHHHHHHHHHHHhc
Q 028776 158 RV-CMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 158 ~~-~~~~~~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
.+ .+++++||++|.|++++|+++.+.+...
T Consensus 149 ~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 149 IHAVKYLECSALNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence 23 5899999999999999999999988654
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=183.78 Aligned_cols=167 Identities=20% Similarity=0.275 Sum_probs=129.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 97 (204)
+||+++|.+|||||||++++.. +.... ..++++..+.........+.+|||+|++.+......+++++|++|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~------~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYME------RRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhc------CCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence 5899999999999999999964 22222 3456666655555667789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC---------------------ccCHHHHHHHhCcccc-
Q 028776 98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD---------------------AVSADELARYLDLKKL- 155 (204)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~---------------------~~~~~~~~~~~~~~~~- 155 (204)
|||++++++|+.+..|+..+.... ..+.|+|+|+||+|+.. ....++...+......
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~ 152 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKY 152 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcc
Confidence 999999999999999988877643 35789999999999854 3334555555432110
Q ss_pred --------ccceeEEEeecccCCCChHHHHHHHHHHHHhchhHHH
Q 028776 156 --------DERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTEM 192 (204)
Q Consensus 156 --------~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~~~~~ 192 (204)
.....+|+++||++|.||+++|..+.+.+.+......
T Consensus 153 ~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~ 197 (220)
T cd04126 153 KMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQR 197 (220)
T ss_pred ccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 1123689999999999999999999988875554443
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=176.79 Aligned_cols=159 Identities=35% Similarity=0.653 Sum_probs=125.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 98 (204)
+|+++|++|||||||++++++... ....+.++.++....+......+.+|||||+..+...+..+++++|++++|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~-----~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENA-----QSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCC-----CcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence 589999999999999999965211 123345666665555666788899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCC--CCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHHH
Q 028776 99 IDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 176 (204)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 176 (204)
+|++++.++.....|+..+..... ..++|+++|+||+|+.......++...+..........+++++||++|.|++++
T Consensus 76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~ 155 (162)
T cd04157 76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHH
Confidence 999999888888888877765432 247999999999999876566666666553332233467899999999999999
Q ss_pred HHHHHH
Q 028776 177 VEWLVE 182 (204)
Q Consensus 177 ~~~i~~ 182 (204)
+++|.+
T Consensus 156 ~~~l~~ 161 (162)
T cd04157 156 VQWLQA 161 (162)
T ss_pred HHHHhc
Confidence 999864
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=173.77 Aligned_cols=163 Identities=23% Similarity=0.370 Sum_probs=137.6
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee----EEEEeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
..+||+++|+.|+|||+|+.++.. .........|+++++. .+.....++.+|||+|+++++.+.+.++++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~------~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRg 83 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVS------NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRG 83 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHh------cccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhcc
Confidence 459999999999999999999954 3333333445666554 344566789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC--CccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP--DAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+-++|+|||++..++|..+..|+..+-.+...+++-.++|+||+|.. ..++.+|-..+.. ....-|+++||++
T Consensus 84 aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr-----~h~~LFiE~SAkt 158 (209)
T KOG0080|consen 84 AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFAR-----KHRCLFIECSAKT 158 (209)
T ss_pred CceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHH-----hhCcEEEEcchhh
Confidence 99999999999999999999999999999888899999999999987 3666777777665 5667799999999
Q ss_pred CCChHHHHHHHHHHHHhchh
Q 028776 170 GFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~~~ 189 (204)
.+||+..|+.++++|.+-+.
T Consensus 159 ~~~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 159 RENVQCCFEELVEKIIETPS 178 (209)
T ss_pred hccHHHHHHHHHHHHhcCcc
Confidence 99999999999999976543
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=177.27 Aligned_cols=187 Identities=56% Similarity=0.939 Sum_probs=169.3
Q ss_pred ChhHHHHHHhhhcCCcccEEEEEcCCCCChHHHHHHHHhhcc-CCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCc
Q 028776 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 79 (204)
||+|+.|++.++.++..+.|+|+|..++|||||+.++...+. ...+....++.+|.+.+.+.+......+.+||.+|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 899999999999999999999999999999999999965554 4455667778899999999999999999999999999
Q ss_pred chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCc-cccccc
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL-KKLDER 158 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~ 158 (204)
..++.|..++..+|++|+++|+.+++.|+.....++.+.......+.|+++.+||.|+.......++...++. ......
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999999888888888777788999999999999999999999988883 334567
Q ss_pred eeEEEeecccCCCChHHHHHHHHHHHHhc
Q 028776 159 VCMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 159 ~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
..++.++||.+|+||++..+|+...++..
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 88999999999999999999999998766
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=179.32 Aligned_cols=157 Identities=16% Similarity=0.372 Sum_probs=122.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE----eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++... .....+.++.+..+..... ....+.+|||+|++.+.......+..+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTG------EFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQ 74 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC------CCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCC
Confidence 58999999999999999999642 2233344555554443322 3567899999999988888888899999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCCh
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 173 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 173 (204)
++|+|+|++++++|..+..|+..+..... +.|+++|+||+|+.......+...... ....+++++||++|.|+
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v 147 (166)
T cd00877 75 CAIIMFDVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQITFHR-----KKNLQYYEISAKSNYNF 147 (166)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHHHHH-----HcCCEEEEEeCCCCCCh
Confidence 99999999999999999999888877653 799999999999974332222222222 34567999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 028776 174 KESVEWLVEVMERS 187 (204)
Q Consensus 174 ~~l~~~i~~~i~~~ 187 (204)
+++|+++.+.+.+.
T Consensus 148 ~~~f~~l~~~~~~~ 161 (166)
T cd00877 148 EKPFLWLARKLLGN 161 (166)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999888653
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=176.10 Aligned_cols=157 Identities=39% Similarity=0.719 Sum_probs=124.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 98 (204)
||+++|++|+|||||++++..... ....++++.....+.+....+.+|||||+..+...+..+++.+|++++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV-------VTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC-------cCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 689999999999999999954211 1123566666666777788999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHHHHH
Q 028776 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178 (204)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 178 (204)
+|++++.++.....++..++......+.|+++|+||+|+.+.....++...+..........+++++||++|.|++++++
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99999877777777777666544345799999999999976655566665554333333456899999999999999999
Q ss_pred HHHH
Q 028776 179 WLVE 182 (204)
Q Consensus 179 ~i~~ 182 (204)
++.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=178.72 Aligned_cols=158 Identities=23% Similarity=0.379 Sum_probs=121.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-EEEE--eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
++||+++|.+|||||||++++... .....+.++++..+. .+.. ....+.+|||||++.+...+..+++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQG------IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQ 74 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhC------CCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCC
Confidence 479999999999999999999642 222233334432222 2233 3456789999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|++++.+|+.+..|+..+.......+.|+++|+||+|+... ...++...... ....+++++||++|.
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 149 (164)
T cd04175 75 GFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-----QWGCAFLETSAKAKI 149 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHH-----HhCCEEEEeeCCCCC
Confidence 99999999999999999999988876654567999999999999652 33333333322 223689999999999
Q ss_pred ChHHHHHHHHHHHH
Q 028776 172 GIKESVEWLVEVME 185 (204)
Q Consensus 172 ~v~~l~~~i~~~i~ 185 (204)
|++++|.++.+.+.
T Consensus 150 ~v~~~~~~l~~~l~ 163 (164)
T cd04175 150 NVNEIFYDLVRQIN 163 (164)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988664
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=178.28 Aligned_cols=163 Identities=39% Similarity=0.602 Sum_probs=133.3
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
..+.++|+++|++|||||||++++.+... ..+.++.+.....+..++..+.+||+||+..+...+..+++++|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~-------~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad 88 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRL-------AQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVD 88 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCC-------cccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCC
Confidence 45689999999999999999999964221 12334555555667777889999999999998888889999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccc-----------ccceeEE
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-----------DERVCMF 162 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 162 (204)
++++|+|+.+.+++.....++..++......+.|+++++||+|+......+++...++.... ......+
T Consensus 89 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 89 GIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 99999999999889888888888876655567999999999999877788888888764221 1234679
Q ss_pred EeecccCCCChHHHHHHHHHH
Q 028776 163 EAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 163 ~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
++|||++|.|++++|+++.+.
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEeEecCCCChHHHHHHHHhh
Confidence 999999999999999999764
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=177.62 Aligned_cols=167 Identities=38% Similarity=0.658 Sum_probs=127.7
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE-----eCcEEEEEEcCCCcchHHHHHHhcc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-----SNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
..+||+++|++|||||||++++.... .... .++.+........ ....+.+|||||++.+...+..+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~------~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 74 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNE------FVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTR 74 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC------cCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhc
Confidence 46899999999999999999995421 1111 2344333332222 4578999999999999889999999
Q ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccc-ccceeEEEeecccC
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYD 169 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 169 (204)
++|++++|+|++++++++....|+..+.......+.|+++|+||+|+......+++...+..... .....+++++||++
T Consensus 75 ~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 154 (183)
T cd04152 75 CTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAII 154 (183)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeeccc
Confidence 99999999999999888888888877776544457999999999999766666666666542222 12346789999999
Q ss_pred CCChHHHHHHHHHHHHhchh
Q 028776 170 GFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~~~ 189 (204)
|.|+++++++|.+.+.+...
T Consensus 155 ~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 155 GEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999998864443
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=179.65 Aligned_cols=155 Identities=20% Similarity=0.306 Sum_probs=120.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee---EEEEeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
++||+++|+.|||||||++++.. +.....+.++++..+. .+....+.+.+|||+|++.+......+++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~ 74 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAK------DCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSD 74 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCC
Confidence 47999999999999999999964 2333444555543332 12334577899999999999888889999999
Q ss_pred EEEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCeEEEEEeCCCCCC--------------ccCHHHHHHHhCccccccc
Q 028776 94 AVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDER 158 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~ 158 (204)
++++|||+++++||+.+ ..|+..+.... ++.|+++|+||+|+.+ ..+.++..++.. ..
T Consensus 75 ~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~-----~~ 147 (178)
T cd04131 75 AVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK-----QL 147 (178)
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH-----Hh
Confidence 99999999999999996 67877776554 5799999999999853 244455555543 33
Q ss_pred e-eEEEeecccCCCC-hHHHHHHHHHHH
Q 028776 159 V-CMFEAVSGYDGFG-IKESVEWLVEVM 184 (204)
Q Consensus 159 ~-~~~~~~Sa~~~~~-v~~l~~~i~~~i 184 (204)
+ .+++++||++|+| |+++|..+.+..
T Consensus 148 ~~~~~~E~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 148 GAEIYLECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred CCCEEEECccCcCCcCHHHHHHHHHHHH
Confidence 4 3799999999995 999999998854
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=174.34 Aligned_cols=157 Identities=43% Similarity=0.773 Sum_probs=132.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 98 (204)
||+++|.+|||||||++++++.. .....++.+.....+.+....+.+||+||+..+...+...++.+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-------VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence 68999999999999999997543 12344566666666777788999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHHHHH
Q 028776 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178 (204)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 178 (204)
+|+++++++.....++..+.......+.|+++|+||+|+......+++...+..........+++++||++|.|++++|+
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 99999999999989988887765556899999999999988777777877776554445567899999999999999999
Q ss_pred HHHH
Q 028776 179 WLVE 182 (204)
Q Consensus 179 ~i~~ 182 (204)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=176.91 Aligned_cols=157 Identities=25% Similarity=0.392 Sum_probs=118.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceee-eEEEE--eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
.+||+++|++|||||||++++... .....+.++.+..+ ..+.. ....+.+|||||++.+...+..+++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 74 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQG------IFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQ 74 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhC------CCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCC
Confidence 379999999999999999999642 22222333333111 12333 3456789999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|++++++|+.+..|+..+.......+.|+++|+||+|+.. ....++...... ....+++++||++|.
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 149 (163)
T cd04136 75 GFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR-----QWGCPFYETSAKSKI 149 (163)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH-----HcCCeEEEecCCCCC
Confidence 9999999999999999999988887665446799999999999865 223333333322 223689999999999
Q ss_pred ChHHHHHHHHHHH
Q 028776 172 GIKESVEWLVEVM 184 (204)
Q Consensus 172 ~v~~l~~~i~~~i 184 (204)
|++++|+++.+.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998754
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=184.87 Aligned_cols=160 Identities=18% Similarity=0.401 Sum_probs=127.9
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE----eCcEEEEEEcCCCcchHHHHHHhc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
....+||+++|..|||||||++++.. +.....+.++++..+..... ....+.+|||+|++.+...+..++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~------~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 83 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLT------GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY 83 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhh------CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHc
Confidence 46789999999999999999999853 33344555666655554332 346899999999999999899999
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC-ccCHHHHHHHhCccccccceeEEEeeccc
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
+++|++|+|||++++++|..+..|+..+.... .+.|+++|+||+|+.. ....+++ ... .....+++++||+
T Consensus 84 ~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~-----~~~~~~~~e~SAk 155 (219)
T PLN03071 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TFH-----RKKNLQYYEISAK 155 (219)
T ss_pred ccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HHH-----HhcCCEEEEcCCC
Confidence 99999999999999999999999998887654 5799999999999964 2333333 222 1345679999999
Q ss_pred CCCChHHHHHHHHHHHHhc
Q 028776 169 DGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 169 ~~~~v~~l~~~i~~~i~~~ 187 (204)
+|.|++++|++|.+.+.+.
T Consensus 156 ~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 156 SNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 9999999999999988654
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-29 Score=175.63 Aligned_cols=157 Identities=37% Similarity=0.737 Sum_probs=130.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 98 (204)
+|+++|++|||||||++++.+. ....+.++.+.....+......+.+||+||+..+...+..+++++|++++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-------~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-------IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-------CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence 4899999999999999999653 223445666666666777888999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccc---ccceeEEEeecccCC-----
Q 028776 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL---DERVCMFEAVSGYDG----- 170 (204)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~----- 170 (204)
+|++++.++.....|+..+.......++|+++|+||+|+....+..++...+..... .....+++++||++|
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 999999999999999998887654467999999999999887777777777654332 124568899999998
Q ss_pred -CChHHHHHHHHH
Q 028776 171 -FGIKESVEWLVE 182 (204)
Q Consensus 171 -~~v~~l~~~i~~ 182 (204)
.|+++.|+||.+
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=168.93 Aligned_cols=159 Identities=24% Similarity=0.402 Sum_probs=137.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE----EEEeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
-++.+|+|++|+|||+|+.++.. ..+...|..|+++++.. ++.+.+++.+|||+|++.+......++++.
T Consensus 8 LfkllIigDsgVGKssLl~rF~d------dtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgt 81 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFAD------DTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGT 81 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhh------cccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCC
Confidence 46789999999999999999954 45566677777777653 445678899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
+++++|||+++.+||.+...|+..+...+ +..|-++|+||.|..+ ....++.+.+.. ..++.++++|++++
T Consensus 82 hgv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~-----~mgie~FETSaKe~ 154 (198)
T KOG0079|consen 82 HGVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFAL-----QMGIELFETSAKEN 154 (198)
T ss_pred ceEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHH-----hcCchheehhhhhc
Confidence 99999999999999999999999998877 5899999999999987 455666666665 67889999999999
Q ss_pred CChHHHHHHHHHHHHhch
Q 028776 171 FGIKESVEWLVEVMERSK 188 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~~~~ 188 (204)
+|++..|..|.+.+.+..
T Consensus 155 ~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 155 ENVEAMFHCITKQVLQAK 172 (198)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 999999999998886655
|
|
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=175.31 Aligned_cols=157 Identities=22% Similarity=0.303 Sum_probs=120.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-EEEE--eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
.+||+++|++|||||||++++.+.. ....+.++.+..+. .+.. ....+.+|||+|++.+...+..+++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~ 74 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNH------FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 74 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCC------CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCC
Confidence 4799999999999999999996522 22223333332221 1222 3356788999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC-ccCHHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
++++|+|+++..+|..+..|+..+.......+.|+++|+||+|+.. .....+...... ....+++++||++|.|
T Consensus 75 ~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 149 (162)
T cd04138 75 GFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-----SYGIPYIETSAKTRQG 149 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-----HhCCeEEEecCCCCCC
Confidence 9999999999999999988888887765546799999999999975 333444444433 2345799999999999
Q ss_pred hHHHHHHHHHHH
Q 028776 173 IKESVEWLVEVM 184 (204)
Q Consensus 173 v~~l~~~i~~~i 184 (204)
++++|+++.+.+
T Consensus 150 i~~l~~~l~~~~ 161 (162)
T cd04138 150 VEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=175.42 Aligned_cols=166 Identities=39% Similarity=0.699 Sum_probs=134.3
Q ss_pred hhhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhc
Q 028776 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
+..+..+.++|+++|++|||||||++++.+... ..+.++.++....+...+..+.+||+||+..+...+...+
T Consensus 7 ~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~-------~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~ 79 (173)
T cd04155 7 KLRKSSEEPRILILGLDNAGKTTILKQLASEDI-------SHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYF 79 (173)
T ss_pred HhhccCCccEEEEEccCCCCHHHHHHHHhcCCC-------cccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence 344556789999999999999999999965321 1234455655566677788999999999998888888889
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+++|++++|+|+.+..++.....++..++......++|+++++||+|+.+....+++...++.........+++++||++
T Consensus 80 ~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 80 ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCC
Confidence 99999999999999888888888887777665446799999999999987766777777776544444456788999999
Q ss_pred CCChHHHHHHHHH
Q 028776 170 GFGIKESVEWLVE 182 (204)
Q Consensus 170 ~~~v~~l~~~i~~ 182 (204)
|+|+++++++|.+
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=176.26 Aligned_cols=158 Identities=24% Similarity=0.401 Sum_probs=124.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE--eCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|++|+|||||++++.+ ......+.++.+..+. .+.. ....+.+|||||++.+.......++++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~a 76 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSE------DSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 76 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhh------CcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCC
Confidence 58999999999999999999964 2233344455544332 2222 346789999999999988888999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|++++++|..+..|+..+.... ..+.|+++|+||+|+.+ ....++...... ....+++++||++|
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 150 (167)
T cd01867 77 MGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKAN 150 (167)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCC
Confidence 99999999999999999999988876643 25789999999999975 334455555543 23457999999999
Q ss_pred CChHHHHHHHHHHHHh
Q 028776 171 FGIKESVEWLVEVMER 186 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~~ 186 (204)
.|++++|+++.+.+..
T Consensus 151 ~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 151 INVEEAFFTLAKDIKK 166 (167)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988753
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=183.68 Aligned_cols=160 Identities=19% Similarity=0.297 Sum_probs=125.3
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE---EEEeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
...+||+++|+.|||||||+.++.. +.....+.++++..+.. +....+.+.+|||+|++.+......++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~------~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ 84 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAK------DCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 84 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhc------CCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCC
Confidence 4578999999999999999999954 33344455555544321 22345788999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCeEEEEEeCCCCCC--------------ccCHHHHHHHhCccccc
Q 028776 92 AHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLD 156 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~ 156 (204)
+|++++|||+++++||... ..|+..+.... ++.|+|+|+||+|+.+ .++.++...+..
T Consensus 85 ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~----- 157 (232)
T cd04174 85 SDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK----- 157 (232)
T ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH-----
Confidence 9999999999999999974 67877776543 4789999999999853 344555555554
Q ss_pred ccee-EEEeecccCCC-ChHHHHHHHHHHHHhc
Q 028776 157 ERVC-MFEAVSGYDGF-GIKESVEWLVEVMERS 187 (204)
Q Consensus 157 ~~~~-~~~~~Sa~~~~-~v~~l~~~i~~~i~~~ 187 (204)
..+. +|++|||++|+ ||+++|..+...+.+.
T Consensus 158 ~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 158 QLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred HcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 3444 68999999998 8999999999887654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=175.75 Aligned_cols=158 Identities=21% Similarity=0.314 Sum_probs=121.0
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee---EEEEeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
+.+||+++|++|+|||||++++.+.. ....+.++....+. .+......+.+|||||++.+...+..+++.+
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 74 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSY------FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTG 74 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCC------CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhC
Confidence 35899999999999999999996532 12222233332221 1223346788999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|++++.+|..+..|+..+.......+.|+++|+||+|+... ...++...... ..+.+++++||++|
T Consensus 75 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 149 (164)
T cd04145 75 EGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-----KLKIPYIETSAKDR 149 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-----HcCCcEEEeeCCCC
Confidence 999999999999999999999888876544467899999999999653 23344444433 23457899999999
Q ss_pred CChHHHHHHHHHHH
Q 028776 171 FGIKESVEWLVEVM 184 (204)
Q Consensus 171 ~~v~~l~~~i~~~i 184 (204)
.|++++|+++.+.+
T Consensus 150 ~~i~~l~~~l~~~~ 163 (164)
T cd04145 150 LNVDKAFHDLVRVI 163 (164)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998765
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=175.66 Aligned_cols=157 Identities=22% Similarity=0.411 Sum_probs=123.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEE--EeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++++.. ....+.++.+..+. .+. .....+.+|||||++.+...+..+++.+|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGR------FVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQ 74 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC------CCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCC
Confidence 589999999999999999996532 22344455554432 222 34568899999999999888999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCC----CCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecc
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDL----QGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
++++|+|++++++|..+..|+..+...... .+.|+++|+||+|+.+ ....++...... ....+++++||
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 149 (168)
T cd04119 75 GVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----SKGFKYFETSA 149 (168)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----HcCCeEEEEEC
Confidence 999999999999999999999888766542 4689999999999973 334555544443 23367999999
Q ss_pred cCCCChHHHHHHHHHHHH
Q 028776 168 YDGFGIKESVEWLVEVME 185 (204)
Q Consensus 168 ~~~~~v~~l~~~i~~~i~ 185 (204)
++|.|+++++++|.+.+.
T Consensus 150 ~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 150 CTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=174.85 Aligned_cols=155 Identities=33% Similarity=0.580 Sum_probs=126.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 98 (204)
.|+++|++|||||||++++.+. .....+.++.+.....+......+.+||+||+..+...+..+++++|++++|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~------~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V 74 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSE------RSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFV 74 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcC------CCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 3799999999999999999642 2234455666666666777788999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccc-ccceeEEEeecccC------CC
Q 028776 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYD------GF 171 (204)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~ 171 (204)
+|++++.+|.....|+..+.... .++|+++|+||+|+.......++...+..... ....++++++||++ ++
T Consensus 75 ~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~ 152 (164)
T cd04162 75 VDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRME 152 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHH
Confidence 99999988988888888886543 57999999999999877666666666543332 34567888888888 99
Q ss_pred ChHHHHHHHH
Q 028776 172 GIKESVEWLV 181 (204)
Q Consensus 172 ~v~~l~~~i~ 181 (204)
||+++|+.+.
T Consensus 153 ~v~~~~~~~~ 162 (164)
T cd04162 153 AVKDLLSQLI 162 (164)
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=174.15 Aligned_cols=156 Identities=25% Similarity=0.396 Sum_probs=121.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEE--EeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++.+ ......+.++.+..+. .+. .....+.+|||+|++.+...+...++++|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~ 75 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAM 75 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCc
Confidence 7999999999999999999964 2222334445543332 222 23467899999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|++++++|+.+..|+..+.... ....|+++|+||+|+.+. ...++...... ..+.+++++||++|.
T Consensus 76 ~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 149 (165)
T cd01865 76 GFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFEFFEASAKENI 149 (165)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCEEEEEECCCCC
Confidence 9999999999999999999988876543 246899999999999653 33444444433 233579999999999
Q ss_pred ChHHHHHHHHHHHH
Q 028776 172 GIKESVEWLVEVME 185 (204)
Q Consensus 172 ~v~~l~~~i~~~i~ 185 (204)
|++++|+++.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (165)
T cd01865 150 NVKQVFERLVDIIC 163 (165)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=165.34 Aligned_cols=178 Identities=34% Similarity=0.649 Sum_probs=161.0
Q ss_pred hHHHHHHhhh---cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCc
Q 028776 3 SLFYGLWKYI---FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 3 ~~~~~~~~~~---~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 79 (204)
.++...+.|. +-..++.+.++|..++|||||++.. ..+...+...+|.+++.+++...++.+.+||.||++
T Consensus 3 ~~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~i------a~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~ 76 (186)
T KOG0075|consen 3 AKLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVI------ARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 76 (186)
T ss_pred hHHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEE------eeccchhhhcccccceeEEeccCceEEEEEecCCCc
Confidence 3444444444 3467899999999999999999987 336667888899999999999999999999999999
Q ss_pred chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccce
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV 159 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 159 (204)
.+...|+.+.++++++++|+|+.+++..+.....+.+++......++|+++.+||.|+..+.+..++...++....+...
T Consensus 77 rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdRE 156 (186)
T KOG0075|consen 77 RFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDRE 156 (186)
T ss_pred cHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccce
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred eEEEeecccCCCChHHHHHHHHHHHHh
Q 028776 160 CMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 160 ~~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
+-++.+|+++..|++.+.+||.+.-..
T Consensus 157 vcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 157 VCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred EEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 999999999999999999999886543
|
|
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-29 Score=176.76 Aligned_cols=155 Identities=21% Similarity=0.310 Sum_probs=116.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-EEEEe--CcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
.+||+++|.+|||||||+.++.. +.....+.++++..+. .+..+ .+.+.+|||+|++.+...+..+++++|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~------~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~ 74 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTT------NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 74 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCC
Confidence 37999999999999999999954 3333445556554443 23333 367889999999999888888999999
Q ss_pred EEEEEEeCCCCCCHHHHHH-HHHHHHhcCCCCCCeEEEEEeCCCCCCccC--------------HHHHHHHhCccccccc
Q 028776 94 AVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAVS--------------ADELARYLDLKKLDER 158 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~ 158 (204)
++++|+|++++++|+.+.. |+..+.... ++.|+|+|+||+|+.+... .++...... ...
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~----~~~ 148 (175)
T cd01874 75 VFLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLAR----DLK 148 (175)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHH----HhC
Confidence 9999999999999999875 665554432 5799999999999854311 112222211 112
Q ss_pred eeEEEeecccCCCChHHHHHHHHHH
Q 028776 159 VCMFEAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 159 ~~~~~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
..+++++||++|.|++++|+.++..
T Consensus 149 ~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 149 AVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999998875
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=174.51 Aligned_cols=158 Identities=23% Similarity=0.336 Sum_probs=120.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-E--EEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-R--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
+||+++|++|||||||++++.+... ...+.++....+. . .......+.+|||||++.+...+..+++.+|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~ 74 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHF------VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEG 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC------CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCE
Confidence 5899999999999999999965321 1112222221111 1 22334678899999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
+++|+|++++++|..+..|+..+.......+.|+++|+||+|+.. ....++...... ....+++++||++|.|
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 149 (164)
T smart00173 75 FLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-----QWGCPFLETSAKERVN 149 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-----HcCCEEEEeecCCCCC
Confidence 999999999999999999888877665545789999999999965 234444444443 2336899999999999
Q ss_pred hHHHHHHHHHHHHh
Q 028776 173 IKESVEWLVEVMER 186 (204)
Q Consensus 173 v~~l~~~i~~~i~~ 186 (204)
++++|+++.+.+..
T Consensus 150 i~~l~~~l~~~~~~ 163 (164)
T smart00173 150 VDEAFYDLVREIRK 163 (164)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987653
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=179.68 Aligned_cols=164 Identities=24% Similarity=0.435 Sum_probs=128.1
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE--eCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
..+||+++|++|||||||++++.+. .....+.++.+..+. .+.. ....+.+||+||++.+...+..++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ 78 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADN------TFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRG 78 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC------CCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCC
Confidence 4799999999999999999999642 223334455554433 2222 34578899999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|+|++++++|..+..|+..+.... ...|+++|+||+|+... ...++...... ..+.+++++||++
T Consensus 79 a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~ 151 (199)
T cd04110 79 THGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAG-----QMGISLFETSAKE 151 (199)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCC
Confidence 999999999999999999999988876543 57899999999999753 33444444443 2346799999999
Q ss_pred CCChHHHHHHHHHHHHhchhHHH
Q 028776 170 GFGIKESVEWLVEVMERSKRTEM 192 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~~~~~~ 192 (204)
|.|++++|++|.+.+........
T Consensus 152 ~~gi~~lf~~l~~~~~~~~~~~~ 174 (199)
T cd04110 152 NINVEEMFNCITELVLRAKKDNL 174 (199)
T ss_pred CcCHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999976655443
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=173.64 Aligned_cols=157 Identities=26% Similarity=0.430 Sum_probs=122.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE--eCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|++|||||||++++.+. .....+.++.+..+. .+.. ....+.+||+||++.+...+..+++.+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 75 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADD------TYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 75 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC------CCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcC
Confidence 479999999999999999999642 222233344443332 2322 345789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|++++++|..+..|+..+.... ..+.|+++|+||+|+.. ....++...... ..+.+++++||++|
T Consensus 76 ~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 149 (166)
T cd01869 76 HGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNA 149 (166)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCC
Confidence 99999999999999999999988776543 25689999999999865 334455555443 33568999999999
Q ss_pred CChHHHHHHHHHHHH
Q 028776 171 FGIKESVEWLVEVME 185 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~ 185 (204)
.|++++|+.+.+.+.
T Consensus 150 ~~v~~~~~~i~~~~~ 164 (166)
T cd01869 150 TNVEQAFMTMAREIK 164 (166)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998774
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=172.25 Aligned_cols=180 Identities=37% Similarity=0.699 Sum_probs=162.7
Q ss_pred ChhHHHHHHhhhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
|...+..++......++.+|+++|-.++||||++.+| ..+....+ .||++++...+.+.+.++.+||.+|+.+
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykL------k~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKL------KLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEee------ccCCcccC-CCccccceeEEEEcceEEEEEecCCCcc
Confidence 4455666777778899999999999999999999998 33444444 6899999999999999999999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccccccee
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (204)
++..|.+++.+.+++|||+|+++.+.+......+..++........|+++.+||.|+....+..++.+.++...+.....
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w 153 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW 153 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc
Confidence 99999999999999999999999999999999999998887777899999999999999999999999999888888889
Q ss_pred EEEeecccCCCChHHHHHHHHHHHHhc
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 161 ~~~~~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
.+..|+|.+|+|+.|.++|+.+.+...
T Consensus 154 ~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 154 HIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred EEeeccccccccHHHHHHHHHHHHhcc
Confidence 999999999999999999999988643
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=179.54 Aligned_cols=161 Identities=22% Similarity=0.300 Sum_probs=122.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-EEEE--eCcEEEEEEcCCCcchHHHHHHhcccCCEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 95 (204)
||+++|.+|||||||+++|.. +.....+.++.+..+. .... ....+.+|||||++.+...+..+++.+|++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ 74 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL------NHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGF 74 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh------CCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEE
Confidence 589999999999999999964 2222334444443222 1222 345688999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC--CCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 96 VFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++|+|++++++|+.+..|+..+..... ..+.|+|+|+||+|+.+ .....+...... ..+.+++++||++|.
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SAk~~~ 149 (190)
T cd04144 75 ILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALAR-----RLGCEFIEASAKTNV 149 (190)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEecCCCCC
Confidence 999999999999999999887765432 25689999999999964 333444433332 234579999999999
Q ss_pred ChHHHHHHHHHHHHhchhH
Q 028776 172 GIKESVEWLVEVMERSKRT 190 (204)
Q Consensus 172 ~v~~l~~~i~~~i~~~~~~ 190 (204)
|++++|+++.+.+.+.+..
T Consensus 150 ~v~~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 150 NVERAFYTLVRALRQQRQG 168 (190)
T ss_pred CHHHHHHHHHHHHHHhhcc
Confidence 9999999999988655544
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=163.34 Aligned_cols=175 Identities=38% Similarity=0.664 Sum_probs=154.4
Q ss_pred HHHHHhhhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHH
Q 028776 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 84 (204)
+.-++.....+++++|+++|..|+||||+++++.+ ...+.+.++.++......++...+++||.+|+...++.
T Consensus 4 lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~-------~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~ 76 (185)
T KOG0073|consen 4 LSILRKQKLKEREVRILILGLDNSGKTTIVKKLLG-------EDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSY 76 (185)
T ss_pred HHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcC-------CCccccCCccceeeEEEEecceEEEEEEcCCcchhHHH
Confidence 33344444466799999999999999999999954 33677889999999999999999999999999999999
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccc-ccceeEEE
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFE 163 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~ 163 (204)
|..+++..|++|+|+|+.++..+++....+..++........|+++++||.|+..+.+.+++...++.... +...++++
T Consensus 77 W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~ 156 (185)
T KOG0073|consen 77 WKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLV 156 (185)
T ss_pred HHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEE
Confidence 99999999999999999999999998888888887655567899999999999988999999988886555 77889999
Q ss_pred eecccCCCChHHHHHHHHHHHHh
Q 028776 164 AVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 164 ~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
.||+.+|+++.+-+.|+...+.+
T Consensus 157 ~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 157 KCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred EEeccccccHHHHHHHHHHHHHH
Confidence 99999999999999999998876
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-29 Score=176.78 Aligned_cols=155 Identities=19% Similarity=0.310 Sum_probs=114.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee---EEEEeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
++||+++|.+|||||||+.++.. +.....+.++....+. ........+.+|||+|++.+...+..+++++|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 74 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhc------CCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCC
Confidence 47999999999999999999954 2222333344332221 23334467889999999999998899999999
Q ss_pred EEEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCeEEEEEeCCCCCCc--------------cCHHHHHHHhCccccccc
Q 028776 94 AVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDER 158 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~ 158 (204)
++|+|||+++++||..+. .|+..+.... .+.|+++|+||+|+.+. .+.++...... ...
T Consensus 75 ~~ilv~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~ 148 (174)
T cd01871 75 VFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK----EIG 148 (174)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH----HcC
Confidence 999999999999999986 4665554432 57999999999999642 12222222222 112
Q ss_pred eeEEEeecccCCCChHHHHHHHHHH
Q 028776 159 VCMFEAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 159 ~~~~~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
..+++++||++|.|++++|+.+.+.
T Consensus 149 ~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 149 AVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CcEEEEecccccCCHHHHHHHHHHh
Confidence 2589999999999999999998764
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=179.90 Aligned_cols=159 Identities=25% Similarity=0.323 Sum_probs=125.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EEEe---CcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS---NSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
+||+++|++|||||||+++|.+ ......+.++.+..++. +..+ ...+.+|||+|++.+...+..+++++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~------~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~a 74 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAK------EGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGA 74 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcC
Confidence 5899999999999999999964 33344555666655432 3332 46789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCC--CCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeeccc
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDL--QGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
|++++|+|++++++|+.+..|+..+...... ...|+++|+||+|+.+ ....++...... ..+.+++++||+
T Consensus 75 d~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-----~~~~~~~~iSAk 149 (215)
T cd04109 75 HAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-----ANGMESCLVSAK 149 (215)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECC
Confidence 9999999999999999999988888765432 3578999999999964 344444444443 234578999999
Q ss_pred CCCChHHHHHHHHHHHHhc
Q 028776 169 DGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 169 ~~~~v~~l~~~i~~~i~~~ 187 (204)
+|.|++++|+++.+.+...
T Consensus 150 tg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 150 TGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999988653
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-29 Score=164.62 Aligned_cols=161 Identities=23% Similarity=0.366 Sum_probs=134.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEE----EeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+|++++|...+|||+|+.++.+ ......+.+|.++.+..-. ...+++++|||.|++.++.....+++++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~d------dSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhc------cccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 47999999999999999999954 5555677778887765311 1457899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
+++|+|||+.+.+||..++.|...+-.+. +.+.|+|+|+||||+.+ ..+.+....... ..++.++++||+.|
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktys-w~naqvilvgnKCDmd~eRvis~e~g~~l~~-----~LGfefFEtSaK~N 168 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYS-WDNAQVILVGNKCDMDSERVISHERGRQLAD-----QLGFEFFETSAKEN 168 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeee-ccCceEEEEecccCCccceeeeHHHHHHHHH-----HhChHHhhhccccc
Confidence 99999999999999999999998887774 48899999999999976 344555555554 44568999999999
Q ss_pred CChHHHHHHHHHHHHhchh
Q 028776 171 FGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~~~~~ 189 (204)
.||+.+|+.+...|.....
T Consensus 169 inVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 169 INVKQVFERLVDIICDKMS 187 (193)
T ss_pred ccHHHHHHHHHHHHHHHhh
Confidence 9999999999999865443
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=172.89 Aligned_cols=157 Identities=25% Similarity=0.416 Sum_probs=119.5
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcccccccee--eeEEEEeC--cEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
..+||+++|++|+|||||++++.. +.....+.++.+.. ...+...+ ..+.+|||||++.+...+..+++.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ 75 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS------GTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRS 75 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh------CCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhcc
Confidence 468999999999999999999954 22222333343322 22333433 578999999999999889999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|+|++++++|..+..|+..+.... ..+.|+++|+||+|+... ...++....... .....++++||++
T Consensus 76 ~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~ 150 (165)
T cd01864 76 ANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEK----NGMLAVLETSAKE 150 (165)
T ss_pred CCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCcEEEEEECCC
Confidence 999999999999999999999988886643 257899999999999652 334444444331 1224689999999
Q ss_pred CCChHHHHHHHHHH
Q 028776 170 GFGIKESVEWLVEV 183 (204)
Q Consensus 170 ~~~v~~l~~~i~~~ 183 (204)
|.|++++++++.+.
T Consensus 151 ~~~v~~~~~~l~~~ 164 (165)
T cd01864 151 SQNVEEAFLLMATE 164 (165)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999865
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=172.45 Aligned_cols=168 Identities=23% Similarity=0.330 Sum_probs=135.4
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE----EEEeCcEEEEEEcCCCcchHHHHHHh
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKY 88 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~ 88 (204)
+++.-+||+++|++|+|||||++++.+ ......+..|++..+.. ++...+.+++|||+|++++.++--.+
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~------~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aF 78 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVN------KKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAF 78 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHH------HHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccce
Confidence 345679999999999999999999954 23334444566655442 33344567899999999999999999
Q ss_pred cccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCC---CCeEEEEEeCCCCCC----ccCHHHHHHHhCccccccceeE
Q 028776 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ---GAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCM 161 (204)
Q Consensus 89 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~ 161 (204)
++++|.+++|||+++++||+.+..|-..++.+.... .-|+|+++||+|+.. .++....+.... ...++|
T Consensus 79 YRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~----s~gnip 154 (210)
T KOG0394|consen 79 YRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK----SKGNIP 154 (210)
T ss_pred ecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH----hcCCce
Confidence 999999999999999999999999999999876532 359999999999965 345556666655 456799
Q ss_pred EEeecccCCCChHHHHHHHHHHHHhchhH
Q 028776 162 FEAVSGYDGFGIKESVEWLVEVMERSKRT 190 (204)
Q Consensus 162 ~~~~Sa~~~~~v~~l~~~i~~~i~~~~~~ 190 (204)
++++|||+..||++.|+.+.....+....
T Consensus 155 yfEtSAK~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 155 YFETSAKEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred eEEecccccccHHHHHHHHHHHHHhccch
Confidence 99999999999999999999888766543
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=172.04 Aligned_cols=154 Identities=25% Similarity=0.394 Sum_probs=120.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEEe--CcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|+|||||+.++.. +.....+.++.+..+. .+... ...+.+||++|++.+...+..+++++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 74 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTD------NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQ 74 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCc
Confidence 5899999999999999999954 3333444555554433 23333 357889999999999988999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|++++++|+.+..|+..+.... ..+.|+++|+||.|+.+ ....++...... ....+++++||++|.
T Consensus 75 ~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~ 148 (161)
T cd04117 75 GIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAK-----EYGMDFFETSACTNS 148 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCC
Confidence 9999999999999999999988776543 24789999999999965 334455544443 223678999999999
Q ss_pred ChHHHHHHHHHH
Q 028776 172 GIKESVEWLVEV 183 (204)
Q Consensus 172 ~v~~l~~~i~~~ 183 (204)
|++++|++|.+.
T Consensus 149 ~v~~~f~~l~~~ 160 (161)
T cd04117 149 NIKESFTRLTEL 160 (161)
T ss_pred CHHHHHHHHHhh
Confidence 999999999864
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=179.62 Aligned_cols=161 Identities=25% Similarity=0.403 Sum_probs=125.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EEE---eCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV---SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
++||+++|++|||||||++++.+. .......++++.++.. +.. ....+.+|||+|++.+......++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~------~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 75 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEG------RFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRN 75 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC------CCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcC
Confidence 589999999999999999999642 2222233455444332 222 23578999999999999889999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|+|++++++|+.+..|+..+.........|+++|+||+|+.. ....++...... ..+.+++++||++
T Consensus 76 ~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~ 150 (211)
T cd04111 76 SVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK-----DLGMKYIETSART 150 (211)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHH-----HhCCEEEEEeCCC
Confidence 999999999999999999999999887665445688999999999975 334455544443 2347899999999
Q ss_pred CCChHHHHHHHHHHHHhch
Q 028776 170 GFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~~ 188 (204)
|.|++++|++|.+.+.+..
T Consensus 151 g~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 151 GDNVEEAFELLTQEIYERI 169 (211)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999886553
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=175.09 Aligned_cols=157 Identities=19% Similarity=0.302 Sum_probs=121.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEEe--CcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|..|||||||++++.. +.....+.+|++..+. .+..+ ...+.+|||+|++.+...+..+++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~------~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~ 74 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE------GEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAV 74 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCC
Confidence 5899999999999999999954 3334456667765553 23333 467899999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC-------HHHHHHHhCccccccceeEEEeec
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-------ADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
++++|+|++++++|..+..|+..+..... ...| |+|+||+|+..... .++...+. ...+.+++++|
T Consensus 75 ~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a-----~~~~~~~~e~S 147 (182)
T cd04128 75 AILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYA-----KAMKAPLIFCS 147 (182)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHHHHHHH-----HHcCCEEEEEe
Confidence 99999999999999999999988866532 3567 67899999964211 11222222 23346899999
Q ss_pred ccCCCChHHHHHHHHHHHHhc
Q 028776 167 GYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~i~~~ 187 (204)
|++|.|++++|+++.+.+.+.
T Consensus 148 Ak~g~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 148 TSHSINVQKIFKIVLAKAFDL 168 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999888653
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=179.99 Aligned_cols=159 Identities=17% Similarity=0.239 Sum_probs=120.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee---EEEEeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
.+||+++|+.|||||||+.++.. +.....+.+|+...+. .+....+.+.+|||+|++.+......+++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~------~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d 74 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAK------DAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSD 74 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHc------CCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCC
Confidence 37999999999999999999964 3334455555554443 23334567889999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--------------cCHHHHHHHhCccccccce
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV 159 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~ 159 (204)
++++|||++++++|+.+..+|...+.... ++.|+|+|+||+|+.+. .+.++...... ..+
T Consensus 75 ~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak-----~~~ 148 (222)
T cd04173 75 AVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK-----QVG 148 (222)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHH-----HcC
Confidence 99999999999999998655544443322 67999999999999642 22333333332 333
Q ss_pred -eEEEeecccCCCC-hHHHHHHHHHHHHhc
Q 028776 160 -CMFEAVSGYDGFG-IKESVEWLVEVMERS 187 (204)
Q Consensus 160 -~~~~~~Sa~~~~~-v~~l~~~i~~~i~~~ 187 (204)
.+|++|||+++.+ |+++|.....+....
T Consensus 149 ~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 149 AVSYVECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 4899999999985 999999999876553
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=170.96 Aligned_cols=157 Identities=39% Similarity=0.726 Sum_probs=123.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE-eCcEEEEEEcCCCcchHHHHHHhcccCCEEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 97 (204)
+|+++|++|||||||++++.+... . ...++.++....+.. ....+.+||+||+..+...+..++..+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~------~-~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~ 73 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL------V-TTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVY 73 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc------c-cccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 589999999999999999965321 1 123444444444443 34689999999999998889999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccc-cccceeEEEeecccCCCChHHH
Q 028776 98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK-LDERVCMFEAVSGYDGFGIKES 176 (204)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l 176 (204)
|+|+.++.++.....++..++......+.|+++|+||+|+......+++...+.... ......+++++||++|+|++++
T Consensus 74 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 74 VVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred EEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence 999999988988888888887654445799999999999976666677766654322 2234568999999999999999
Q ss_pred HHHHHH
Q 028776 177 VEWLVE 182 (204)
Q Consensus 177 ~~~i~~ 182 (204)
+++|.+
T Consensus 154 ~~~i~~ 159 (160)
T cd04156 154 FRKLAS 159 (160)
T ss_pred HHHHhc
Confidence 999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=172.60 Aligned_cols=156 Identities=21% Similarity=0.340 Sum_probs=117.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee----EEEEeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++.... ......++.+.... ........+.+|||+|++.+...+..+++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 74 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG------YEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAH 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC------CCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCC
Confidence 589999999999999999996421 12222223332222 12234567889999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCCh
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 173 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 173 (204)
++++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.... ..+...... ....+++++||++|.|+
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~~~~~~-----~~~~~~~~~Sa~~~~gv 146 (161)
T cd04124 75 ACILVFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKKFNFAE-----KHNLPLYYVSAADGTNV 146 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHHHHHHH-----HcCCeEEEEeCCCCCCH
Confidence 9999999999999999888888776543 478999999999985322 122222211 22467899999999999
Q ss_pred HHHHHHHHHHHHhc
Q 028776 174 KESVEWLVEVMERS 187 (204)
Q Consensus 174 ~~l~~~i~~~i~~~ 187 (204)
+++|+.+.+.+.++
T Consensus 147 ~~l~~~l~~~~~~~ 160 (161)
T cd04124 147 VKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=173.18 Aligned_cols=157 Identities=22% Similarity=0.369 Sum_probs=121.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EE--EeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
||+++|.+|||||||++++.. +.....+.++++..+.. +. .....+.+|||||++.+...+..+++++|+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 75 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK------DVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQA 75 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCE
Confidence 799999999999999999964 33344555666555432 22 234678999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC----HHHHHHHhCccccccceeEEEeecccCC
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
+++|+|++++++|.....|+..+.........|+++|+||+|+.+... .++...... ....+++++||++|
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~g 150 (170)
T cd04108 76 IIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA-----EMQAEYWSVSALSG 150 (170)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHH-----HcCCeEEEEECCCC
Confidence 999999999999999999998887654434578999999999865322 222222222 22357899999999
Q ss_pred CChHHHHHHHHHHHHh
Q 028776 171 FGIKESVEWLVEVMER 186 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~~ 186 (204)
.|++++|+.+.+.+.+
T Consensus 151 ~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 151 ENVREFFFRVAALTFE 166 (170)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988754
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=176.21 Aligned_cols=163 Identities=25% Similarity=0.398 Sum_probs=125.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE--eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++.+ +.....+.++.+..+. .+.. ....+.+||++|++.+...+...++++|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d 74 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE------DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAH 74 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCC
Confidence 5899999999999999999964 2233334445543332 2222 3467889999999999989999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|++++++|..+..|+..+..... ...|+++|+||+|+.+ ..+.++...... ..+.+++++||++|.
T Consensus 75 ~iilv~d~~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~evSa~~~~ 148 (188)
T cd04125 75 GYLLVYDVTDQESFENLKFWINEINRYAR-ENVIKVIVANKSDLVNNKVVDSNIAKSFCD-----SLNIPFFETSAKQSI 148 (188)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCCcccccCCHHHHHHHHH-----HcCCeEEEEeCCCCC
Confidence 99999999999999999999888776533 4589999999999974 233444444332 234579999999999
Q ss_pred ChHHHHHHHHHHHHhchhHHH
Q 028776 172 GIKESVEWLVEVMERSKRTEM 192 (204)
Q Consensus 172 ~v~~l~~~i~~~i~~~~~~~~ 192 (204)
|++++|+++.+.+........
T Consensus 149 ~i~~~f~~l~~~~~~~~~~~~ 169 (188)
T cd04125 149 NVEEAFILLVKLIIKRLEEQE 169 (188)
T ss_pred CHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999876554443
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=171.61 Aligned_cols=153 Identities=24% Similarity=0.390 Sum_probs=120.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EE----EeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE----VSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
+||+++|++|+|||||++++++. .....+.++++..+.. +. .....+.+|||||++.+...+..++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 74 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKG------IFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRG 74 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC------CCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcC
Confidence 58999999999999999999642 2233344555554432 22 235679999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|+|++++++|..+..|+..+.... .++|+++|+||+|+.. ....++...... ..+.+++++|+++
T Consensus 75 ~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~ 147 (162)
T cd04106 75 AQACILVFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAK-----RLQLPLFRTSVKD 147 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCC
Confidence 999999999999999999988888775543 5799999999999965 334455554443 2345899999999
Q ss_pred CCChHHHHHHHHHH
Q 028776 170 GFGIKESVEWLVEV 183 (204)
Q Consensus 170 ~~~v~~l~~~i~~~ 183 (204)
|.|+++++++|.+.
T Consensus 148 ~~~v~~l~~~l~~~ 161 (162)
T cd04106 148 DFNVTELFEYLAEK 161 (162)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998754
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=172.50 Aligned_cols=157 Identities=26% Similarity=0.364 Sum_probs=118.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcccccccee-eeEEEE--eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
++||+++|.+|+|||||++++.. +.....+.++.... ...+.. ....+.+|||||++.+...+..+++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 74 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVS------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQ 74 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCC
Confidence 47999999999999999999954 22223333333211 112322 3346789999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|++++.+|..+..|+..+.......++|+++|+||+|+.. .....+...... ..+.+++++||++|.
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 149 (163)
T cd04176 75 GFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE-----EWGCPFMETSAKSKT 149 (163)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH-----HhCCEEEEecCCCCC
Confidence 9999999999999999999988887765446799999999999864 222233332221 223578999999999
Q ss_pred ChHHHHHHHHHHH
Q 028776 172 GIKESVEWLVEVM 184 (204)
Q Consensus 172 ~v~~l~~~i~~~i 184 (204)
|++++|+++.+.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998754
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=171.47 Aligned_cols=158 Identities=24% Similarity=0.332 Sum_probs=122.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceee----eEEEEeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|.+|||||||++++.+.. ......++.+.+. .........+.+||+||++.+......+++.+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 77 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKR------FQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGA 77 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC------CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccC
Confidence 4899999999999999999996522 1122222322222 12333446789999999999988888999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|++++.+|..+..|+..+..... ++.|+++|+||.|+.. ....++...... ....+++++||+++
T Consensus 78 d~il~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 151 (168)
T cd01866 78 AGALLVYDITRRETFNHLTSWLEDARQHSN-SNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTA 151 (168)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCC
Confidence 999999999999999999999988866542 6799999999999974 345556555544 33467999999999
Q ss_pred CChHHHHHHHHHHHHh
Q 028776 171 FGIKESVEWLVEVMER 186 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~~ 186 (204)
.|++++|.++.+.+.+
T Consensus 152 ~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 152 SNVEEAFINTAKEIYE 167 (168)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-29 Score=164.77 Aligned_cols=168 Identities=24% Similarity=0.383 Sum_probs=132.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee----EEEEeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
-+||+++|..|+|||+|+++++. +.++.....|+++.+. ++..+.+++.+|||+|+++++....++++-+
T Consensus 7 lfkivlvgnagvgktclvrrftq------glfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhc------cCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence 47999999999999999999954 4444444456665544 3555678999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
+++|++||++...+|+-+.+|+..+..+.. .++--|+|+||.|+.+. .++.....+.+.......|.++||++..|
T Consensus 81 halilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~n 156 (213)
T KOG0095|consen 81 HALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADN 156 (213)
T ss_pred ceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhh
Confidence 999999999999999999999999988765 46677999999999663 23333333333344566789999999999
Q ss_pred hHHHHHHHHHHHHhchhHHHHH
Q 028776 173 IKESVEWLVEVMERSKRTEMLR 194 (204)
Q Consensus 173 v~~l~~~i~~~i~~~~~~~~~~ 194 (204)
++.||..+.-.+....+.....
T Consensus 157 ve~lf~~~a~rli~~ar~~d~v 178 (213)
T KOG0095|consen 157 VEKLFLDLACRLISEARQNDLV 178 (213)
T ss_pred HHHHHHHHHHHHHHHHHhccch
Confidence 9999999987775544443333
|
|
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=172.57 Aligned_cols=159 Identities=19% Similarity=0.349 Sum_probs=123.4
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EE--EEeCcEEEEEEcCCCcchHHHHHHhcc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RI--EVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
...+||+++|++|||||||++++.+ +.....+.++.+..+. .+ ......+.+||+||++.+...+..+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 76 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYR 76 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHc------CCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhc
Confidence 3569999999999999999999964 2222333345444332 22 234467889999999999999999999
Q ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCC---CCCCeEEEEEeCCCCCC-ccCHHHHHHHhCccccccceeEEEeec
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
.+|++++|+|++++++|..+..|+..+..... ..+.|+++|+||+|+.. ....+++.+.... ....+++++|
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~S 152 (170)
T cd04116 77 GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETS 152 (170)
T ss_pred CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEE
Confidence 99999999999999999999999888776443 24689999999999964 4556666666542 1224789999
Q ss_pred ccCCCChHHHHHHHHHH
Q 028776 167 GYDGFGIKESVEWLVEV 183 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~ 183 (204)
|++|.|++++|+.+.+.
T Consensus 153 a~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 153 AKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 99999999999999864
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=171.71 Aligned_cols=155 Identities=19% Similarity=0.302 Sum_probs=116.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE---EEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
+||+++|++|||||||++++++. .....+.++.+..+.. .......+.+|||||++.+.......++.+|+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~------~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 75 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKG------TFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHA 75 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC------CCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCE
Confidence 79999999999999999999642 2223333343322221 22345678999999999998888888999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCC--CCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
+++|+|++++++|+.+..|+..+..... ..+.|+++|+||+|+.. +....+...... ....+++++||++|
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SA~~g 150 (165)
T cd04140 76 FILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT-----EWNCAFMETSAKTN 150 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH-----HhCCcEEEeecCCC
Confidence 9999999999999999888876654322 25789999999999965 333333333332 23467899999999
Q ss_pred CChHHHHHHHHHH
Q 028776 171 FGIKESVEWLVEV 183 (204)
Q Consensus 171 ~~v~~l~~~i~~~ 183 (204)
.|++++|++|...
T Consensus 151 ~~v~~~f~~l~~~ 163 (165)
T cd04140 151 HNVQELFQELLNL 163 (165)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999999753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=177.45 Aligned_cols=162 Identities=19% Similarity=0.313 Sum_probs=126.4
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE--eCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
..+||+++|++|||||||+++|.+. .....+.++++.++. .+.. ..+.+.+|||+|++.+...+..++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~------~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 84 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRN------EFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC------CCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence 4589999999999999999999642 222334455554432 2333 34688999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
++++++|+|++++++|+.+..|+..+..... .+.|+++|+||+|+... ...++...... ....+++++||++
T Consensus 85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~-----~~~~~~~e~SA~~ 158 (216)
T PLN03110 85 AVGALLVYDITKRQTFDNVQRWLRELRDHAD-SNIVIMMAGNKSDLNHLRSVAEEDGQALAE-----KEGLSFLETSALE 158 (216)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEEChhcccccCCCHHHHHHHHH-----HcCCEEEEEeCCC
Confidence 9999999999999999999999887765532 57999999999998652 33344443332 3457899999999
Q ss_pred CCChHHHHHHHHHHHHhchh
Q 028776 170 GFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~~~ 189 (204)
|.|++++|+++.+.+.+...
T Consensus 159 g~~v~~lf~~l~~~i~~~~~ 178 (216)
T PLN03110 159 ATNVEKAFQTILLEIYHIIS 178 (216)
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999876543
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=176.80 Aligned_cols=159 Identities=22% Similarity=0.298 Sum_probs=118.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE---EEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
.||+++|++|||||||++++.+ +.....+.++....+.. .+.....+.+|||+|++.+...+..+++++|+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~ 74 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR------GYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDV 74 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCE
Confidence 3899999999999999999964 22233344444333321 22334678999999999988888888999999
Q ss_pred EEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHH--------------HHHHHhCccccccce
Q 028776 95 VVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVSAD--------------ELARYLDLKKLDERV 159 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--------------~~~~~~~~~~~~~~~ 159 (204)
+++|||++++++|+.+. .|+..+.... .+.|+++|+||+|+.+..... +...... ....
T Consensus 75 ~ilv~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~ 148 (189)
T cd04134 75 IMLCFSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAK----RINA 148 (189)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHH----HcCC
Confidence 99999999999998886 4766665443 579999999999997643222 1222211 1223
Q ss_pred eEEEeecccCCCChHHHHHHHHHHHHhch
Q 028776 160 CMFEAVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 160 ~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~ 188 (204)
.+++++||++|.|++++|+++.+.+....
T Consensus 149 ~~~~e~SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 149 LRYLECSAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence 67999999999999999999998886544
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=171.40 Aligned_cols=157 Identities=27% Similarity=0.442 Sum_probs=121.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE--eCcEEEEEEcCCCcchH-HHHHHhccc
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLR-SIWEKYYEE 91 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~-~~~~~~~~~ 91 (204)
.+||+++|++|||||||++++.. +.....+.++.+..+. .+.. ....+.+|||+|++.+. ..+..++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 75 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA------GRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRN 75 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh------CCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcC
Confidence 58999999999999999999964 2223333445443332 2223 34688999999998886 467888899
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|+|++++++|..+..|+..+.......++|+++|+||+|+.. ....++...... ....+++++||++
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~ 150 (170)
T cd04115 76 VHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD-----AHSMPLFETSAKD 150 (170)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH-----HcCCcEEEEeccC
Confidence 999999999999999999999988887665556799999999999865 333444444433 2346799999999
Q ss_pred ---CCChHHHHHHHHHHH
Q 028776 170 ---GFGIKESVEWLVEVM 184 (204)
Q Consensus 170 ---~~~v~~l~~~i~~~i 184 (204)
+.+++++|..+.+.+
T Consensus 151 ~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 151 PSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CcCCCCHHHHHHHHHHHh
Confidence 899999999998766
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=161.35 Aligned_cols=168 Identities=24% Similarity=0.352 Sum_probs=137.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee----EEEEeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
-+|++++|+.|+|||+|+.++.. ....+...+|+++.+. .+....+++++|||+|+++++.....+++++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie------~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIE------NKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHH------hhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 37999999999999999999954 3344444556665554 2334567899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
-+.++|||+++.++|+.+-.|+.+...... +++-+|+++||.|+.. ++.+.+..++.+ ...+.+.++|+++|
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs-~nIvviL~GnKkDL~~~R~VtflEAs~Faq-----Enel~flETSa~TG 156 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTG 156 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCC-CcEEEEEeCChhhcChhhhhhHHHHHhhhc-----ccceeeeeeccccc
Confidence 999999999999999999999988866543 6788999999999976 666777777776 55668999999999
Q ss_pred CChHHHHHHHHHHHHhchhHHHHHhh
Q 028776 171 FGIKESVEWLVEVMERSKRTEMLRAR 196 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~~~~~~~~~~~~ 196 (204)
+||+|.|-...+.|....+...+.+.
T Consensus 157 eNVEEaFl~c~~tIl~kIE~GElDPe 182 (214)
T KOG0086|consen 157 ENVEEAFLKCARTILNKIESGELDPE 182 (214)
T ss_pred ccHHHHHHHHHHHHHHHHhhcCCCHH
Confidence 99999999999888776665444443
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=169.07 Aligned_cols=156 Identities=24% Similarity=0.414 Sum_probs=120.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceee--eEEEEe--CcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|++|||||||++++.+.. ......++.+.++ ..+..+ ...+.+||+||++.+.......++.+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 76 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNE------FNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGA 76 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC------CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCC
Confidence 4799999999999999999996422 1222233443322 223333 35789999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
+++++|+|++++.+|..+..|+..+..... .+.|+++|+||+|+.. ....++...... ....+++++||++|
T Consensus 77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 150 (165)
T cd01868 77 VGALLVYDITKKQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDG 150 (165)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence 999999999999999999999887766542 4689999999999965 334555555543 23467999999999
Q ss_pred CChHHHHHHHHHHH
Q 028776 171 FGIKESVEWLVEVM 184 (204)
Q Consensus 171 ~~v~~l~~~i~~~i 184 (204)
.|++++++++.+.+
T Consensus 151 ~~v~~l~~~l~~~i 164 (165)
T cd01868 151 TNVEEAFKQLLTEI 164 (165)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=168.89 Aligned_cols=155 Identities=27% Similarity=0.514 Sum_probs=129.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EEE--eCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
||+++|+.|||||||++++.+ ......+.++.+.+... +.. ....+.+||++|++.+.......++++|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 74 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN------GEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDA 74 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH------SSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESE
T ss_pred CEEEECCCCCCHHHHHHHHHh------hcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999965 33345555666555443 222 45678999999999999988999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
+++|+|+++++||+.+..|+..+..... ...|+++++||.|+.+ ..+.++...+.. ..+.+++++|++++.|
T Consensus 75 ~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 75 IIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----ELGVPYFEVSAKNGEN 148 (162)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----HTTSEEEEEBTTTTTT
T ss_pred cccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----HhCCEEEEEECCCCCC
Confidence 9999999999999999999998887764 4689999999999986 666777777765 3348899999999999
Q ss_pred hHHHHHHHHHHHH
Q 028776 173 IKESVEWLVEVME 185 (204)
Q Consensus 173 v~~l~~~i~~~i~ 185 (204)
+.++|..+.+.+.
T Consensus 149 v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 149 VKEIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=166.44 Aligned_cols=157 Identities=37% Similarity=0.701 Sum_probs=126.8
Q ss_pred EEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEE
Q 028776 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 99 (204)
Q Consensus 20 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 99 (204)
|+++|++|||||||++++.+. .....+.++.+............+.+||+||++.+...+..++..+|++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG------QFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC------CCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence 799999999999999999653 22334455666666666667788999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHHHHHH
Q 028776 100 DAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 179 (204)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 179 (204)
|+++++++.....++..+.......+.|+++|+||+|+......+++...+..........+++++|+++|.|+++++++
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 99998888888888887776544467899999999999776555566555553333345578999999999999999999
Q ss_pred HHH
Q 028776 180 LVE 182 (204)
Q Consensus 180 i~~ 182 (204)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 865
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-28 Score=169.61 Aligned_cols=154 Identities=27% Similarity=0.399 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee----EEEEeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++.+.. ......++.+..+. .+......+.+||+||++.+...+...++.+|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~ 74 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENK------FKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAA 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC------CCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCC
Confidence 589999999999999999996422 12222233332222 12233467899999999999988999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|++++++|..+..|+..+.... ..+.|+++|+||+|+.. ....++...... ..+.+++++||+++.
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 148 (161)
T cd04113 75 GALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGE 148 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCC
Confidence 9999999999999999999888765443 26799999999999975 344555555554 233689999999999
Q ss_pred ChHHHHHHHHHH
Q 028776 172 GIKESVEWLVEV 183 (204)
Q Consensus 172 ~v~~l~~~i~~~ 183 (204)
|++++|+++.+.
T Consensus 149 ~i~~~~~~~~~~ 160 (161)
T cd04113 149 NVEEAFLKCARS 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=172.09 Aligned_cols=161 Identities=19% Similarity=0.262 Sum_probs=120.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE-EEE---eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV---SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++.+. .....+.++....+.. +.. ..+.+.+|||||++.+......+++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~------~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 74 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQG------KFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVD 74 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC------cCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCC
Confidence 58999999999999999999642 2223333444333221 222 2457899999999999998888999999
Q ss_pred EEEEEEeCCCCCCHHHHHH-HHHHHHhcCCCCCCeEEEEEeCCCCCCc------cCHHHHHHHhCcccccccee-EEEee
Q 028776 94 AVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDA------VSADELARYLDLKKLDERVC-MFEAV 165 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~ 165 (204)
++++|+|++++++|+.+.. |+..+.... .+.|+|+|+||+|+... ...++...... ..+. +++++
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~ 147 (187)
T cd04132 75 VLLICYAVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-----KQGAFAYLEC 147 (187)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-----HcCCcEEEEc
Confidence 9999999999999998864 655554432 57899999999999653 23444444433 2223 78999
Q ss_pred cccCCCChHHHHHHHHHHHHhchhHH
Q 028776 166 SGYDGFGIKESVEWLVEVMERSKRTE 191 (204)
Q Consensus 166 Sa~~~~~v~~l~~~i~~~i~~~~~~~ 191 (204)
||++|.|++++|+.+.+.+.......
T Consensus 148 Sa~~~~~v~~~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEALKKEGKA 173 (187)
T ss_pred cCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999987665543
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-28 Score=169.25 Aligned_cols=151 Identities=15% Similarity=0.275 Sum_probs=109.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe--CcEEEEEEcCCCcchHHHHHHhcccCCEE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 95 (204)
+||+++|+.|||||||+.++.... ....+.++.+.....+..+ ...+.+|||+|++.. .+++.+|++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~------f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ 69 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGS------YVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAV 69 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCC------CCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEE
Confidence 589999999999999999985421 1111112211111223333 467899999999752 456789999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC----ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++|||+++++||+.+..|+..+.......+.|+++|+||+|+.. ..+.++...... .....+|++|||++|.
T Consensus 70 ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 70 IFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA----DMKRCSYYETCATYGL 145 (158)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH----HhCCCcEEEEecCCCC
Confidence 99999999999999999998887765556789999999999842 334444433332 1224689999999999
Q ss_pred ChHHHHHHHHHH
Q 028776 172 GIKESVEWLVEV 183 (204)
Q Consensus 172 ~v~~l~~~i~~~ 183 (204)
||+++|..+.+.
T Consensus 146 ~i~~~f~~~~~~ 157 (158)
T cd04103 146 NVERVFQEAAQK 157 (158)
T ss_pred CHHHHHHHHHhh
Confidence 999999998754
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=173.15 Aligned_cols=161 Identities=25% Similarity=0.443 Sum_probs=122.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EEE--eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++.+.... ...+.++.+..+.. +.. ....+.+|||||+..+......+++.+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 75 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFL-----NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAH 75 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-----ccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCC
Confidence 58999999999999999999642211 11233344333221 222 3467899999999999888888999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|++++++|+.+..|+..+..... .+.|+++|+||+|+.. ....++...... ..+.+++++||++|.
T Consensus 76 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~-----~~~~~~~e~Sa~~~~ 149 (191)
T cd04112 76 ALLLLYDITNKASFDNIRAWLTEIKEYAQ-EDVVIMLLGNKADMSGERVVKREDGERLAK-----EYGVPFMETSAKTGL 149 (191)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccchhccccCHHHHHHHHH-----HcCCeEEEEeCCCCC
Confidence 99999999999999999998887766532 4789999999999963 334444444432 234689999999999
Q ss_pred ChHHHHHHHHHHHHhchh
Q 028776 172 GIKESVEWLVEVMERSKR 189 (204)
Q Consensus 172 ~v~~l~~~i~~~i~~~~~ 189 (204)
|++++|++|.+.+.+...
T Consensus 150 ~v~~l~~~l~~~~~~~~~ 167 (191)
T cd04112 150 NVELAFTAVAKELKHRKY 167 (191)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999876643
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=169.98 Aligned_cols=165 Identities=21% Similarity=0.367 Sum_probs=140.0
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE----EEEeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
--+||+++|++++|||-|+.+++. ..+...-.+|+++.+.. ++...++.++|||+||++++.....++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftr------nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTR------NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcc------cccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 358999999999999999999943 34444455677777664 44456788999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+-++++|||+++..+|+.+..|+..+..+.. +++++++|+||+||.+ .+..++.+.+.. ..+.+++++||..
T Consensus 87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~Ae-----~~~l~f~EtSAl~ 160 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFAE-----KEGLFFLETSALD 160 (222)
T ss_pred cceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHHH-----hcCceEEEecccc
Confidence 9999999999999999999999999988765 6899999999999976 666777777765 5667899999999
Q ss_pred CCChHHHHHHHHHHHHhchhHHH
Q 028776 170 GFGIKESVEWLVEVMERSKRTEM 192 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~~~~~~ 192 (204)
+.||++.|+.+...|........
T Consensus 161 ~tNVe~aF~~~l~~I~~~vs~k~ 183 (222)
T KOG0087|consen 161 ATNVEKAFERVLTEIYKIVSKKQ 183 (222)
T ss_pred cccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988876655543
|
|
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=167.80 Aligned_cols=157 Identities=28% Similarity=0.453 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEEe--CcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++.+.. ......++.+..+. .+..+ ...+.+||+||+..+.......++.+|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 74 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGK------FSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAV 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC------CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCC
Confidence 589999999999999999996532 12223333333322 23333 357889999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|++++++++.+..|+..+..... .++|+++|+||+|+.. ....+....... ..+.+++++|+++|.
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~ 148 (164)
T smart00175 75 GALLVYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTNT 148 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCCC
Confidence 99999999999999998888887766543 5799999999999875 334455555433 234679999999999
Q ss_pred ChHHHHHHHHHHHHh
Q 028776 172 GIKESVEWLVEVMER 186 (204)
Q Consensus 172 ~v~~l~~~i~~~i~~ 186 (204)
|++++++++.+.+.+
T Consensus 149 ~i~~l~~~i~~~~~~ 163 (164)
T smart00175 149 NVEEAFEELAREILK 163 (164)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988754
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=177.84 Aligned_cols=158 Identities=20% Similarity=0.292 Sum_probs=122.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccce-eeeE--EEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL-NIGR--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
+||+++|.+|||||||++++.. +.....+.+++.. .... +......+.+|||+|++.+......++..+|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~------~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~ 74 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLG------GRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDV 74 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCE
Confidence 5899999999999999999964 2222334444431 1112 22334678899999999988888888899999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcC--------CCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEe
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNE--------DLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (204)
+|+|||+++.+||+.+..|+..+.... ...+.|+|+|+||+|+.. ....+++...+.. .....+++
T Consensus 75 iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~e 150 (247)
T cd04143 75 FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFE 150 (247)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEE
Confidence 999999999999999999988886531 224789999999999964 5566777666641 22467999
Q ss_pred ecccCCCChHHHHHHHHHHHH
Q 028776 165 VSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 165 ~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
+||++|.|++++|++|.+...
T Consensus 151 vSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 151 VSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EeCCCCCCHHHHHHHHHHHhc
Confidence 999999999999999998763
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=173.57 Aligned_cols=151 Identities=18% Similarity=0.396 Sum_probs=120.5
Q ss_pred EcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEE----EeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEE
Q 028776 23 LGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (204)
Q Consensus 23 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 98 (204)
+|..|||||||+.+++. +.....+.++++..+.... .....+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 vG~~~vGKTsLi~r~~~------~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV 74 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 74 (200)
T ss_pred CCCCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEE
Confidence 69999999999999953 3344455667665554332 2457899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC-ccCHHHHHHHhCccccccceeEEEeecccCCCChHHHH
Q 028776 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 177 (204)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 177 (204)
||+++..+|..+..|+..+.... .+.|+++|+||+|+.. ....++. ... ....+.+++|||++|.||+++|
T Consensus 75 ~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~-----~~~~~~~~e~SAk~~~~v~~~F 146 (200)
T smart00176 75 FDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-TFH-----RKKNLQYYDISAKSNYNFEKPF 146 (200)
T ss_pred EECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-HHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999988887654 5799999999999864 2333322 222 2345789999999999999999
Q ss_pred HHHHHHHHhc
Q 028776 178 EWLVEVMERS 187 (204)
Q Consensus 178 ~~i~~~i~~~ 187 (204)
+++.+.+.+.
T Consensus 147 ~~l~~~i~~~ 156 (200)
T smart00176 147 LWLARKLIGD 156 (200)
T ss_pred HHHHHHHHhc
Confidence 9999988654
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=167.13 Aligned_cols=156 Identities=26% Similarity=0.420 Sum_probs=121.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceee--e--EEEEeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--G--RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
++||+++|++|||||||++++.+... .....++.+..+ . .+......+.+||+||++.+...+...++++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~------~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 74 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEF------SENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGA 74 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCC------CCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccC
Confidence 47999999999999999999965332 112223333221 1 2333456789999999999988888899999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|++++++|.....|+..+..... ...|+++++||+|+.. ....++...... ..+.+++++||++|
T Consensus 75 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 148 (163)
T cd01860 75 AAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTG 148 (163)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence 999999999999999999999988876643 6799999999999874 334555555443 22367999999999
Q ss_pred CChHHHHHHHHHHH
Q 028776 171 FGIKESVEWLVEVM 184 (204)
Q Consensus 171 ~~v~~l~~~i~~~i 184 (204)
.|++++++++.+.+
T Consensus 149 ~~v~~l~~~l~~~l 162 (163)
T cd01860 149 ENVNELFTEIAKKL 162 (163)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=168.75 Aligned_cols=158 Identities=20% Similarity=0.304 Sum_probs=120.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE---EEEeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
++||+++|++|||||||++++.+. .....+.++.+..+.. .......+.+|||||++.+..++...++.++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 74 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQN------VFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQ 74 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhC------CCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCC
Confidence 479999999999999999999642 2223333444332221 2223467899999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|++++++++....|...+.......+.|+++++||+|+... ...++...... .....+++++||++|.
T Consensus 75 ~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~ 150 (168)
T cd04177 75 GFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNVPFYETSARKRT 150 (168)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCceEEEeeCCCCC
Confidence 99999999999999999888887776544467999999999999652 23333333322 1123679999999999
Q ss_pred ChHHHHHHHHHHH
Q 028776 172 GIKESVEWLVEVM 184 (204)
Q Consensus 172 ~v~~l~~~i~~~i 184 (204)
|++++|+++...+
T Consensus 151 ~i~~~f~~i~~~~ 163 (168)
T cd04177 151 NVDEVFIDLVRQI 163 (168)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=173.72 Aligned_cols=162 Identities=25% Similarity=0.360 Sum_probs=125.4
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE--eCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
..+||+++|++|||||||++++++.. ......++++.++. .+.. ..+.+.+|||+|++.+...+..+++.
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~------~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ 78 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKR------FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC------CCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc
Confidence 46899999999999999999996521 12222334443322 2222 34578899999999998888999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|+|++++++|..+..|+..+..... ...|+++|+||+|+.+ ..+.++...... ..+.+++++||++
T Consensus 79 ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~ 152 (210)
T PLN03108 79 AAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKT 152 (210)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCC
Confidence 9999999999999999999888877755432 5789999999999975 345556666554 3346899999999
Q ss_pred CCChHHHHHHHHHHHHhchh
Q 028776 170 GFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~~~ 189 (204)
+.|++++|+++.+.+.+...
T Consensus 153 ~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 153 AQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 99999999999988865443
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=166.19 Aligned_cols=156 Identities=21% Similarity=0.344 Sum_probs=118.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EE---EeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE---VSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
+||+++|++|||||||++++... .......+.++.+..+.. +. .....+.+|||||++.+..++...++.+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 76 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSN----GAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESP 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC----CCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCC
Confidence 58999999999999999999641 112334445555544332 22 2347889999999999988889999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCcc--CHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|++++++|..+..|+..+.... .+.|+++|+||+|+.... ...+...... ..+.+++++||++|
T Consensus 77 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 149 (164)
T cd04101 77 SVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQ-----ANQLKFFKTSALRG 149 (164)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence 99999999999999998888888776653 468999999999996532 3323222221 22357999999999
Q ss_pred CChHHHHHHHHHHH
Q 028776 171 FGIKESVEWLVEVM 184 (204)
Q Consensus 171 ~~v~~l~~~i~~~i 184 (204)
.|++++++.+.+.+
T Consensus 150 ~gi~~l~~~l~~~~ 163 (164)
T cd04101 150 VGYEEPFESLARAF 163 (164)
T ss_pred CChHHHHHHHHHHh
Confidence 99999999998764
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=172.55 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=112.9
Q ss_pred ccEEEEEcCCCCChHHHHH-HHHhhccCCCCCCCCccccccce-eee------------EEEEeCcEEEEEEcCCCcchH
Q 028776 17 EFHVLILGIDKAGKTTLLE-KLKSVYSNVEGLPPDRIVPTVGL-NIG------------RIEVSNSKLVFWDLGGQPGLR 82 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~-~l~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~D~~g~~~~~ 82 (204)
.+||+++|+.|||||||+. ++.+... ........+.+|++. ..+ .++...+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~-~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTL-TQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCc-ccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh-
Confidence 4799999999999999996 5533211 112223344555531 111 12334678999999998753
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCeEEEEEeCCCCCC---------------------c
Q 028776 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPD---------------------A 140 (204)
Q Consensus 83 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~---------------------~ 140 (204)
....+++++|++++|||+++++||+.+. .|+..+.... .+.|+|+|+||+|+.+ .
T Consensus 80 -~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
T cd01873 80 -DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADI 156 (195)
T ss_pred -hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCc
Confidence 3455789999999999999999999987 4766665443 4789999999999853 2
Q ss_pred cCHHHHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHH
Q 028776 141 VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
.+.++...... ..+.+|++|||++|.||+++|+.+.+.
T Consensus 157 V~~~e~~~~a~-----~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 157 LPPETGRAVAK-----ELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cCHHHHHHHHH-----HhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 34455554443 445689999999999999999998764
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=165.51 Aligned_cols=154 Identities=23% Similarity=0.404 Sum_probs=118.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceee--eEEEE--eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++++... .....++.+..+ ..+.. ....+.+|||||++.+...+...++.+|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~ 74 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF------DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSS 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC------CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCC
Confidence 4899999999999999999965321 112223333222 22333 3357899999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|++++++|..+..|+..+..... .+.|+++++||+|+.. ....++...... ..+.+++++||+++.
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 148 (161)
T cd01861 75 VAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAGH 148 (161)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCCC
Confidence 99999999999999999999888766543 3699999999999954 334445555543 234779999999999
Q ss_pred ChHHHHHHHHHH
Q 028776 172 GIKESVEWLVEV 183 (204)
Q Consensus 172 ~v~~l~~~i~~~ 183 (204)
|++++++++.+.
T Consensus 149 ~v~~l~~~i~~~ 160 (161)
T cd01861 149 NVKELFRKIASA 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-27 Score=166.72 Aligned_cols=160 Identities=23% Similarity=0.372 Sum_probs=121.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE--eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++.+.. ......++.+..+. .+.. ....+.+||+||++.+...+..+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 74 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKK------FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGAD 74 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC------CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCC
Confidence 589999999999999999996532 11222233332221 2222 3456789999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCC---CCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeeccc
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
++++|+|++++.++.....|...+..... ..++|+++|+||+|+.. ....++...... .....+++++|++
T Consensus 75 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~ 150 (172)
T cd01862 75 CCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAK 150 (172)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECC
Confidence 99999999999999888888777665543 23789999999999973 344555555543 1223689999999
Q ss_pred CCCChHHHHHHHHHHHHhc
Q 028776 169 DGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 169 ~~~~v~~l~~~i~~~i~~~ 187 (204)
+|.|++++++++.+.+.+.
T Consensus 151 ~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 151 EAINVEQAFETIARKALEQ 169 (172)
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999887665
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=166.65 Aligned_cols=155 Identities=23% Similarity=0.398 Sum_probs=121.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee----EEEEeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++.+... .....++.+.++. .+......+.+||+||++.+.......++.+|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 74 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTF------DPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQ 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC------CcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCC
Confidence 6899999999999999999965322 1122333333222 12223467899999999999888888999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC-ccCHHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
++++|+|++++.+|.....|+..+.......+.|+++|+||+|+.. ....++...... ....+++++|+++|.|
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 149 (161)
T cd01863 75 GVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTRDG 149 (161)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCCCC
Confidence 9999999999999999888888887766657899999999999974 445555555544 3356799999999999
Q ss_pred hHHHHHHHHHH
Q 028776 173 IKESVEWLVEV 183 (204)
Q Consensus 173 v~~l~~~i~~~ 183 (204)
++++++.+.+.
T Consensus 150 i~~~~~~~~~~ 160 (161)
T cd01863 150 VQQAFEELVEK 160 (161)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=172.67 Aligned_cols=161 Identities=17% Similarity=0.235 Sum_probs=115.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEEeC--cEEEEEEcCCCcch----HH----HH
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGL----RS----IW 85 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~D~~g~~~~----~~----~~ 85 (204)
+||+++|.+|||||||++++.+ +.....+.++.+...+ .+..++ ..+.+|||||...+ .. ..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~------~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLA------QEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHc------CCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHH
Confidence 5899999999999999999964 2222333444432221 233333 67889999996532 11 13
Q ss_pred HHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcC--CCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeE
Q 028776 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE--DLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCM 161 (204)
Q Consensus 86 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~ 161 (204)
...++.+|++++|||+++++||+.+..|+..+.... ...++|+++|+||+|+... ...++...... +....+
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~ 150 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCG 150 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCc
Confidence 345788999999999999999999999988887654 2367999999999999652 33344433322 123568
Q ss_pred EEeecccCCCChHHHHHHHHHHHHhch
Q 028776 162 FEAVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 162 ~~~~Sa~~~~~v~~l~~~i~~~i~~~~ 188 (204)
++++||++|.|++++|+.+.+.+..+.
T Consensus 151 ~~e~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 151 YLECSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 999999999999999999998876443
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=164.24 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=120.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee---EEEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
+||+++|++|||||||+++++..... ..+.++....+. ........+.+||+||+..+.......++.+|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 74 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV------EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEG 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc------cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCE
Confidence 58999999999999999999643211 122222221111 122344678999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
+++|+|++++.+|.....|+..+.......+.|+++|+||+|+.. .....+...... ..+.+++++||++|.|
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 149 (164)
T cd04139 75 FLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVPYVETSAKTRQN 149 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEeeCCCCCC
Confidence 999999999999999999999888765546799999999999976 233444344332 2336899999999999
Q ss_pred hHHHHHHHHHHHH
Q 028776 173 IKESVEWLVEVME 185 (204)
Q Consensus 173 v~~l~~~i~~~i~ 185 (204)
++++|+++.+.+.
T Consensus 150 i~~l~~~l~~~~~ 162 (164)
T cd04139 150 VEKAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-27 Score=167.49 Aligned_cols=155 Identities=21% Similarity=0.311 Sum_probs=112.9
Q ss_pred EEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-EE--EEeCcEEEEEEcCCCcchHHHHHHhcccCCEEE
Q 028776 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (204)
Q Consensus 20 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 96 (204)
|+++|++|||||||++++.+.. ....+.++....+. .+ ......+.+|||||++.+.......++++|+++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 74 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA------FPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFL 74 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC------CCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEE
Confidence 5899999999999999996522 22222233322221 12 223457899999999999888888999999999
Q ss_pred EEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCeEEEEEeCCCCCCc--------------cCHHHHHHHhCccccccceeE
Q 028776 97 FVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERVCM 161 (204)
Q Consensus 97 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~ 161 (204)
+|+|++++++|+.+. .|+..+.... .+.|+++|+||+|+... ...++...... .....+
T Consensus 75 lv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~ 148 (174)
T smart00174 75 ICFSVDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAK----RIGAVK 148 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHH----HcCCcE
Confidence 999999999999886 4666665543 57999999999999652 12222222222 112237
Q ss_pred EEeecccCCCChHHHHHHHHHHHHh
Q 028776 162 FEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 162 ~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
++++||++|.|++++|+.+.+.+.+
T Consensus 149 ~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 149 YLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999987643
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=162.22 Aligned_cols=155 Identities=25% Similarity=0.354 Sum_probs=117.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcccccccee--eeEEE--EeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|+|||||++++.+.... ....++.... ...+. .....+.+||+||++.+...+..+++.+|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 74 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN------EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDAD 74 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC------CCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCC
Confidence 58999999999999999999653221 1111222111 11222 23457899999999999888888899999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|+++++++.....|+..+..... .++|+++|+||+|+.. ....+++..... ..+.+++++|++++.
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~ 148 (162)
T cd04123 75 GAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGK 148 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCC
Confidence 99999999999999998888877766543 3789999999999975 233445544443 234668999999999
Q ss_pred ChHHHHHHHHHHH
Q 028776 172 GIKESVEWLVEVM 184 (204)
Q Consensus 172 ~v~~l~~~i~~~i 184 (204)
|++++++++.+.+
T Consensus 149 gi~~~~~~l~~~~ 161 (162)
T cd04123 149 GIEELFLSLAKRM 161 (162)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=168.99 Aligned_cols=161 Identities=24% Similarity=0.404 Sum_probs=121.2
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE--eCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
..+||+++|++|||||||+++|++... ..+.++.+..+. .+.. ....+.+|||||++.+...+..+++.
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 85 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV-------EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN 85 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-------CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence 468999999999999999999965321 123344443332 2222 34678999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHh-cCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeeccc
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLR-NEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
+|++++|+|++++++|..+..+|...+. .....+.|+++|+||+|+.. ....++...... ....+++++||+
T Consensus 86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~SAk 160 (211)
T PLN03118 86 AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-----EHGCLFLECSAK 160 (211)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence 9999999999999999998775544443 33335689999999999965 233344444333 234679999999
Q ss_pred CCCChHHHHHHHHHHHHhch
Q 028776 169 DGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 169 ~~~~v~~l~~~i~~~i~~~~ 188 (204)
++.|++++|++|.+.+.+..
T Consensus 161 ~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 161 TRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999986643
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=167.16 Aligned_cols=158 Identities=22% Similarity=0.292 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE--eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|+|||||++++...... ...+.++++..+. .+.. ....+.+||++|++.+......+++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d 75 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-----VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAK 75 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-----CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCC
Confidence 58999999999999999999642111 1133445443332 2333 3456779999999998888888899999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCcc------CHHHHHHHhCccccccceeEEEeecc
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV------SADELARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
++++|+|++++++|+....|+..+.... .+.|+++|+||+|+.... ..+++..+.. ....+++++||
T Consensus 76 ~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa 148 (193)
T cd04118 76 AAIVCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-----EIKAQHFETSS 148 (193)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHH-----HcCCeEEEEeC
Confidence 9999999999999998888888776542 478999999999986421 2233333332 23467899999
Q ss_pred cCCCChHHHHHHHHHHHHhc
Q 028776 168 YDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 168 ~~~~~v~~l~~~i~~~i~~~ 187 (204)
++|.|++++++++.+.+.+.
T Consensus 149 ~~~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 149 KTGQNVDELFQKVAEDFVSR 168 (193)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999888654
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-27 Score=165.90 Aligned_cols=156 Identities=21% Similarity=0.247 Sum_probs=116.5
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCC-Cccccccceeee--EEEE--eCcEEEEEEcCCCcchHHHHHHhc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
++.+||+++|.+|||||||++++.+ +... ..+.+|++..+. .+.. ....+.+||++|++.+......++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~------~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~ 75 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG------RSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAEL 75 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC------CCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhh
Confidence 6789999999999999999999964 2222 344555554332 2333 336788999999998888888888
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCcc-----CHHHHHHHhCccccccceeEEEe
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-----SADELARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 164 (204)
+++|++++|+|++++.+|+.+..|+..+... .++|+++|+||+|+.+.. ..+++.+.++ ...+++
T Consensus 76 ~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~ 145 (169)
T cd01892 76 AACDVACLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG-------LPPPLH 145 (169)
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcC-------CCCCEE
Confidence 9999999999999999998888887754322 468999999999996432 1222222221 113588
Q ss_pred ecccCCCChHHHHHHHHHHHHh
Q 028776 165 VSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 165 ~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
+||++|.|++++|+.+.+.+.+
T Consensus 146 ~Sa~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 146 FSSKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred EEeccCccHHHHHHHHHHHhhC
Confidence 9999999999999999987753
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=168.66 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=117.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccc-eeeeEEEEeC--cEEEEEEcCCCcchHHHHHHhcccCCEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG-LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 95 (204)
||+++|++|||||||++++.+.. ....+.++.. .....+...+ ..+.+||+||+..+......++..+|++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 74 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT------FEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAF 74 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC------CCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEE
Confidence 68999999999999999996532 1222222221 1122233333 6789999999999988888899999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc---cCHHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---VSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
++|+|+.++++|+....|+..+.......+.|+|+|+||+|+... ...++...... .....+++++||++|.|
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~g 150 (198)
T cd04147 75 ALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNEN 150 (198)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCC
Confidence 999999999999999999888877655467999999999999652 22222222211 12235789999999999
Q ss_pred hHHHHHHHHHHHHh
Q 028776 173 IKESVEWLVEVMER 186 (204)
Q Consensus 173 v~~l~~~i~~~i~~ 186 (204)
++++|+++.+.+..
T Consensus 151 v~~l~~~l~~~~~~ 164 (198)
T cd04147 151 VLEVFKELLRQANL 164 (198)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998753
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=149.68 Aligned_cols=178 Identities=37% Similarity=0.705 Sum_probs=159.5
Q ss_pred ChhHHHHHHhhhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
|...+..+....+..++++|+.+|..++||||++..|.- + ......+|.+++...+.+.++.+.+||.+|+..
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl------~-~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~ 73 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKL------G-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 73 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhc------C-CCcccccccceeEEEEEeeeeEEeeeeccCchh
Confidence 444566677777888999999999999999999999942 2 334456899999999999999999999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccccccee
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (204)
.+..|.+++.+..++|||+|+.+.+..++....+..++......+.|+++.+||.|+.+....+|+++++.........+
T Consensus 74 iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W 153 (180)
T KOG0071|consen 74 IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNW 153 (180)
T ss_pred hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCcc
Confidence 99999999999999999999999888999999999999888878899999999999999999999999999888877888
Q ss_pred EEEeecccCCCChHHHHHHHHHHHH
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 161 ~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
-+.++|+.+|.|+.|-+.|+...++
T Consensus 154 ~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 154 YVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred EeeccccccchhHHHHHHHHHhhcc
Confidence 8999999999999999999987654
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=165.45 Aligned_cols=156 Identities=19% Similarity=0.275 Sum_probs=110.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-EEEE--eCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
+||+++|++|+|||||++++.... ....+.++....+. .+.. ....+.+|||||+..+.......++.+|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 74 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA------FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 74 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC------CCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCE
Confidence 589999999999999999996422 22222233221111 1222 34567899999999988888888999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC--------------HHHHHHHhCcccccccee
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--------------ADELARYLDLKKLDERVC 160 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~ 160 (204)
+++|+|+.++++|+.....|...+... ..+.|+++|+||+|+.+... .++...... .....
T Consensus 75 ~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~ 149 (174)
T cd04135 75 FLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK----EIGAH 149 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH----HcCCC
Confidence 999999999999988864433333332 36799999999999865321 222222221 11224
Q ss_pred EEEeecccCCCChHHHHHHHHHHH
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 161 ~~~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
+++++||++|.|++++|+.+.+.+
T Consensus 150 ~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 150 CYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEEecCCcCCCHHHHHHHHHHHh
Confidence 689999999999999999998865
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=169.02 Aligned_cols=157 Identities=22% Similarity=0.220 Sum_probs=114.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCC-Cccccccc--eeee--EEEEeCcEEEEEEcCCCcchHHHHHHhcc-c
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVG--LNIG--RIEVSNSKLVFWDLGGQPGLRSIWEKYYE-E 91 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~-~~~~~~~~--~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~ 91 (204)
+||+++|++|||||||++++... ... ..+.++.+ .... .+......+.+|||+|++. .....++. +
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ 72 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSG------EYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQ 72 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC------CcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcC
Confidence 58999999999999999999531 111 22223332 1111 2333557789999999982 23334556 8
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|||++++.+|.....|+..+.......+.|+|+|+||+|+.. ....++...... ..+.+++++||++
T Consensus 73 ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~SA~~ 147 (221)
T cd04148 73 GDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAV-----VFDCKFIETSAGL 147 (221)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHH-----HcCCeEEEecCCC
Confidence 999999999999999999999888877654446799999999999865 233344433322 2345789999999
Q ss_pred CCChHHHHHHHHHHHHhc
Q 028776 170 GFGIKESVEWLVEVMERS 187 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~ 187 (204)
|.|++++|+++.+.+...
T Consensus 148 ~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 148 QHNVDELLEGIVRQIRLR 165 (221)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999988643
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=156.57 Aligned_cols=163 Identities=24% Similarity=0.392 Sum_probs=136.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE-----EEEeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-----IEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
++++.++|+..+|||+|++.++. +...+--.+|.++++.- -+...+++++|||+|+++++....+++++
T Consensus 8 qfrlivigdstvgkssll~~ft~------gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrn 81 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTE------GKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRN 81 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhc------CcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhc
Confidence 68999999999999999999953 44555556777776542 23346789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCC-CeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeeccc
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG-APLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
+-++++|||.++.+||+.+..|+.........+. +-+.+|++|+|+.. .+..+|...... ..+..|+++|++
T Consensus 82 svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa-----~hgM~FVETSak 156 (213)
T KOG0091|consen 82 SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA-----SHGMAFVETSAK 156 (213)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH-----hcCceEEEeccc
Confidence 9999999999999999999999988877665444 55688999999975 677777777765 677899999999
Q ss_pred CCCChHHHHHHHHHHHHhchhH
Q 028776 169 DGFGIKESVEWLVEVMERSKRT 190 (204)
Q Consensus 169 ~~~~v~~l~~~i~~~i~~~~~~ 190 (204)
+|.||++.|..|.+.+.....+
T Consensus 157 ~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 157 NGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred CCCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988665544
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=159.66 Aligned_cols=152 Identities=27% Similarity=0.451 Sum_probs=120.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE----eCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++.+... .....++.+........ ....+.+||+||+..+.......++++|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 74 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKF------DENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAH 74 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC------CCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCC
Confidence 5899999999999999999965322 22233344444333222 4578899999999999899999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC--CccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP--DAVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|+++++++..+..|+..+..... ...|+++++||+|+. .....+++..... ....+++++|++++.
T Consensus 75 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~ 148 (159)
T cd00154 75 GAILVYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGE 148 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCC
Confidence 99999999999889998888877776643 468999999999995 3555666666654 245789999999999
Q ss_pred ChHHHHHHHH
Q 028776 172 GIKESVEWLV 181 (204)
Q Consensus 172 ~v~~l~~~i~ 181 (204)
|+++++++|.
T Consensus 149 ~i~~~~~~i~ 158 (159)
T cd00154 149 NVEELFQSLA 158 (159)
T ss_pred CHHHHHHHHh
Confidence 9999999986
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=163.30 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=110.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 95 (204)
+||+++|.+|||||||++++.+.... ..+..+...... ........+.+|||||...+...+...+..+|++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ 74 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP------ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVI 74 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC------ccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEE
Confidence 48999999999999999999653211 111111111111 1223456789999999988877777788999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCH----HHHHHHhCccccccceeEEEeecccCCC
Q 028776 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++|+|++++++|+.+..+|...+.... .+.|+++|+||+|+.+.... +++..... .. ....+++++||++|.
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~--~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 75 CLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN-EF--REIETCVECSAKTLI 150 (166)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHH-HH--hcccEEEEecccccc
Confidence 999999999999987654433333322 47999999999999764332 22221111 00 111379999999999
Q ss_pred ChHHHHHHHHHHHHh
Q 028776 172 GIKESVEWLVEVMER 186 (204)
Q Consensus 172 ~v~~l~~~i~~~i~~ 186 (204)
|++++|+.+.+.+.+
T Consensus 151 ~v~~lf~~~~~~~~~ 165 (166)
T cd01893 151 NVSEVFYYAQKAVLH 165 (166)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999887754
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=164.19 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=112.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceee---eEEEEeCcEEEEEEcCCCcc-hHHHHHHhcccCCE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI---GRIEVSNSKLVFWDLGGQPG-LRSIWEKYYEEAHA 94 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 94 (204)
||+++|++|||||||++++.... ....+.++....+ ..+......+.+||+||+.. ........++.+|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~ 74 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR------FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADG 74 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc------cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCE
Confidence 68999999999999999986421 1122222221111 12333455788999999885 33456677899999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCC-CCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCC-
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG- 170 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 170 (204)
+++|+|++++++|+.+..|+..+..... ..+.|+++|+||+|+.. ....++...... ....+++++||++|
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~ 149 (165)
T cd04146 75 FVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-----ELGCLFFEVSAAEDY 149 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-----HcCCEEEEeCCCCCc
Confidence 9999999999999999888877765432 35799999999999854 334444444432 22357999999999
Q ss_pred CChHHHHHHHHHHHH
Q 028776 171 FGIKESVEWLVEVME 185 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~ 185 (204)
.|++++|+.+.+.+.
T Consensus 150 ~~v~~~f~~l~~~~~ 164 (165)
T cd04146 150 DGVHSVFHELCREVR 164 (165)
T ss_pred hhHHHHHHHHHHHHh
Confidence 599999999998664
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=162.82 Aligned_cols=155 Identities=23% Similarity=0.319 Sum_probs=110.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceee-eEEEE--eCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
.||+++|++|||||||++++.+. .....+.++....+ ..+.. ....+.+|||+|++.+.......+.++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD------QFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 75 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC------CCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCE
Confidence 68999999999999999999652 22222333333222 12333 34578999999999888877778899999
Q ss_pred EEEEEeCCCCCCHHHHHH-HHHHHHhcCCCCCCeEEEEEeCCCCCCccCH--------------HHHHHHhCccccccce
Q 028776 95 VVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAVSA--------------DELARYLDLKKLDERV 159 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--------------~~~~~~~~~~~~~~~~ 159 (204)
+++|+|++++++|+.+.. |...+.... .+.|+++|+||+|+.+.... .+...... ....
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~----~~~~ 149 (175)
T cd01870 76 ILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN----KIGA 149 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH----HcCC
Confidence 999999999999988864 555444332 47899999999998653211 11111111 1123
Q ss_pred eEEEeecccCCCChHHHHHHHHHHH
Q 028776 160 CMFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 160 ~~~~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
.+++++||++|.|++++|+++.+..
T Consensus 150 ~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 150 FGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred cEEEEeccccCcCHHHHHHHHHHHh
Confidence 4799999999999999999998654
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-26 Score=162.37 Aligned_cols=160 Identities=23% Similarity=0.294 Sum_probs=121.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcccccccee-eeEEEE--eCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
.||+++|++|+|||||++++++.. ....+.++.... ...... ....+.+||+||+..+......++..+|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 75 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH------FVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHG 75 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC------CccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCE
Confidence 689999999999999999996422 122222222211 112223 34567899999999998888889999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
+++|+|+++..+++.+..++..++......+.|+|+|+||+|+.. ....++...... ....+++++||+++.|
T Consensus 76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 150 (180)
T cd04137 76 YILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSARENEN 150 (180)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCCCC
Confidence 999999999999999999999888866556789999999999964 233333333332 2236789999999999
Q ss_pred hHHHHHHHHHHHHhch
Q 028776 173 IKESVEWLVEVMERSK 188 (204)
Q Consensus 173 v~~l~~~i~~~i~~~~ 188 (204)
++++++++.+.+....
T Consensus 151 v~~l~~~l~~~~~~~~ 166 (180)
T cd04137 151 VEEAFELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998886443
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=158.09 Aligned_cols=159 Identities=23% Similarity=0.363 Sum_probs=116.0
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcccccccee--eeEEEEeC--cEEEEEEcCCCcchHHHHHHhcc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
...++|+++|++|||||||++++.+.. ......++++.. ...+..++ ..+.+||+||+..+...+..+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 78 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGL------FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYR 78 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCC------CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc
Confidence 346899999999999999999996422 112222333322 22233333 56889999999999988889999
Q ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC-HHHHHHHhCccccccceeEEEeecccC
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
.+|++++|+|+.++++|+.+..|+..+.... ..+.|+++|+||+|+..... ..+....+. .....+++++||++
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~ 153 (169)
T cd04114 79 SANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKE 153 (169)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCC
Confidence 9999999999999999988888877665433 24689999999999865222 122222222 12236799999999
Q ss_pred CCChHHHHHHHHHHH
Q 028776 170 GFGIKESVEWLVEVM 184 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i 184 (204)
|.|++++|++|.+.+
T Consensus 154 ~~gv~~l~~~i~~~~ 168 (169)
T cd04114 154 SDNVEKLFLDLACRL 168 (169)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-26 Score=162.48 Aligned_cols=153 Identities=18% Similarity=0.307 Sum_probs=110.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceee-eE--EEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GR--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
+|++++|++|+|||||+.++.+. .....+.++....+ .. ++.....+.+|||||+..+...+..+++++|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~ 74 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTN------GYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDV 74 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC------CCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcE
Confidence 58999999999999999999542 22223333321111 11 22234678899999999998888888999999
Q ss_pred EEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCeEEEEEeCCCCCCc--------------cCHHHHHHHhCccccccce
Q 028776 95 VVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV 159 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~ 159 (204)
+++|||++++++|+.+. .|+..+.... .+.|+++|+||+|+... ...++...+.. ....
T Consensus 75 ~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~----~~~~ 148 (173)
T cd04130 75 FLLCFSVVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE----KIGA 148 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH----HhCC
Confidence 99999999999998875 5666665432 46899999999998642 12233333332 1122
Q ss_pred eEEEeecccCCCChHHHHHHHHH
Q 028776 160 CMFEAVSGYDGFGIKESVEWLVE 182 (204)
Q Consensus 160 ~~~~~~Sa~~~~~v~~l~~~i~~ 182 (204)
.+++++||++|.|++++|+.+.-
T Consensus 149 ~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 149 CEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHh
Confidence 37999999999999999998763
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=158.01 Aligned_cols=154 Identities=25% Similarity=0.345 Sum_probs=118.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcccccccee-eeEEEEe--CcEEEEEEcCCCcchHHHHHHhcccCCEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 95 (204)
||+++|++|||||||++++++.. ....+.++.... ......+ ...+.+||+||+..+.......++.+|++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 74 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT------FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGF 74 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC------CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEE
Confidence 68999999999999999996532 222222222211 1112222 46789999999999988889999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCCCh
Q 028776 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 173 (204)
Q Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 173 (204)
++|+|+++++++.....|+..+.........|+++|+||+|+.. ....+++..... ....+++++|++++.|+
T Consensus 75 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i 149 (160)
T cd00876 75 ILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINI 149 (160)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCH
Confidence 99999999999999999998888766546799999999999976 334445545543 22268999999999999
Q ss_pred HHHHHHHHHH
Q 028776 174 KESVEWLVEV 183 (204)
Q Consensus 174 ~~l~~~i~~~ 183 (204)
++++++|.+.
T Consensus 150 ~~l~~~l~~~ 159 (160)
T cd00876 150 DEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-27 Score=156.88 Aligned_cols=162 Identities=23% Similarity=0.337 Sum_probs=127.8
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee----EEEEeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
=.||++++|..-+|||||+-++.... +.....+|+...+. .+.....++.+|||+|+++|..+-+-++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~Enk------Fn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRg 85 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENK------FNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRG 85 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhh------cchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeC
Confidence 36899999999999999999985422 22222222221111 122345678999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
++++++|||+++.+||..+..|...+....+ ..+-+++|+||+|+.+ .+..++...+.. ..+..++++||+.
T Consensus 86 SnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YAe-----svGA~y~eTSAk~ 159 (218)
T KOG0088|consen 86 SNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYAE-----SVGALYMETSAKD 159 (218)
T ss_pred CCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHHH-----hhchhheeccccc
Confidence 9999999999999999999999998877655 5689999999999976 455666666654 6677899999999
Q ss_pred CCChHHHHHHHHHHHHhchh
Q 028776 170 GFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~~~ 189 (204)
+.|+.|+|+.+.....++..
T Consensus 160 N~Gi~elFe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 160 NVGISELFESLTAKMIEHSS 179 (218)
T ss_pred ccCHHHHHHHHHHHHHHHhh
Confidence 99999999999987765543
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-25 Score=162.69 Aligned_cols=164 Identities=16% Similarity=0.392 Sum_probs=126.4
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE----eCcEEEEEEcCCCcchHHHHHHhc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
....+||+++|++|||||||++++.. +.....+.++.+..+....+ ..+.+.+|||+|++.+...+..++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~ 79 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLT------GEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYY 79 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHh
Confidence 45679999999999999999987743 33334445566655544322 457889999999999988888889
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
..++++++|+|+++..+|..+..|+..+.... .+.|+++++||+|+.+.....+...... ..+..++++|+++
T Consensus 80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~ 152 (215)
T PTZ00132 80 IKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFHR-----KKNLQYYDISAKS 152 (215)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHHH-----HcCCEEEEEeCCC
Confidence 99999999999999999999999988877553 5789999999999865322222222222 2346789999999
Q ss_pred CCChHHHHHHHHHHHHhchhH
Q 028776 170 GFGIKESVEWLVEVMERSKRT 190 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~~~~ 190 (204)
|.|++++|.+|.+.+.....-
T Consensus 153 ~~~v~~~f~~ia~~l~~~p~~ 173 (215)
T PTZ00132 153 NYNFEKPFLWLARRLTNDPNL 173 (215)
T ss_pred CCCHHHHHHHHHHHHhhcccc
Confidence 999999999999998765543
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=158.59 Aligned_cols=153 Identities=23% Similarity=0.337 Sum_probs=109.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcccccccee---eeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN---IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
+||+++|++|||||||+++|++... ...+.++.... ..........+.+||+||++.+.......++.+|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~ 74 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF------PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDV 74 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC------CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCE
Confidence 6899999999999999999965322 11111221111 11223345678999999999887777778899999
Q ss_pred EEEEEeCCCCCCHHHHHH-HHHHHHhcCCCCCCeEEEEEeCCCCCCccCH-------------HHHHHHhCcccccccee
Q 028776 95 VVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAVSA-------------DELARYLDLKKLDERVC 160 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-------------~~~~~~~~~~~~~~~~~ 160 (204)
+++|+|++++.+|..... |+..+.... .+.|+++|+||+|+.+.... ++...... .....
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~ 148 (171)
T cd00157 75 FLICFSVDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK----EIGAI 148 (171)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH----HhCCe
Confidence 999999999999877655 444444432 47999999999999764422 22232222 12233
Q ss_pred EEEeecccCCCChHHHHHHHHH
Q 028776 161 MFEAVSGYDGFGIKESVEWLVE 182 (204)
Q Consensus 161 ~~~~~Sa~~~~~v~~l~~~i~~ 182 (204)
+++++||++|.|+++++++|.+
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 149 GYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEEEeecCCCCCHHHHHHHHhh
Confidence 8999999999999999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=154.76 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch---------HHHHHHh
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL---------RSIWEKY 88 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~ 88 (204)
++|+++|++|+|||||++++++...... .....+.............++.+|||||+... .......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA----PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITAL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC----CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHH
Confidence 5899999999999999999976432111 11122444444445556789999999997321 0111111
Q ss_pred cccCCEEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeec
Q 028776 89 YEEAHAVVFVIDAACPSRF--EDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 89 ~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
...+|++++|+|+++..++ +....|+..+.... .+.|+|+|+||+|+.......+..... .....+++++|
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S 149 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEEEE-----ELEGEEVLKIS 149 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHHhh-----hhccCceEEEE
Confidence 2336899999999987654 55556666654432 479999999999997644333322222 23456799999
Q ss_pred ccCCCChHHHHHHHHHHH
Q 028776 167 GYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~i 184 (204)
|++|.|++++++++.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 150 TLTEEGVDEVKNKACELL 167 (168)
T ss_pred ecccCCHHHHHHHHHHHh
Confidence 999999999999998875
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=159.91 Aligned_cols=161 Identities=23% Similarity=0.349 Sum_probs=136.6
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE---EEEeCcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
..+||+++|.+|+|||+|+.++ ....+.+.+.+|+...+.. +......+.++||+|++.+..+...++.+.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf------~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~ 75 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQF------LTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNG 75 (196)
T ss_pred CceEEEEECCCCCCcchheeee------cccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccC
Confidence 4689999999999999999999 3466667777777654443 333456778999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++||++++..||+....++..+.........|+|+|+||+|+.. .+..++...... ....+++++||+.+
T Consensus 76 ~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~-----~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 76 DGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALAR-----SWGCAFIETSAKLN 150 (196)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHH-----hcCCcEEEeeccCC
Confidence 99999999999999999999999997776667789999999999986 677777776643 45567999999999
Q ss_pred CChHHHHHHHHHHHHhc
Q 028776 171 FGIKESVEWLVEVMERS 187 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~~~ 187 (204)
.+++++|..+.+.+...
T Consensus 151 ~~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 151 YNVDEVFYELVREIRLP 167 (196)
T ss_pred cCHHHHHHHHHHHHHhh
Confidence 99999999999988763
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-25 Score=157.81 Aligned_cols=157 Identities=23% Similarity=0.313 Sum_probs=110.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-EE--EEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
.||+++|++|+|||||++++.... ....+.++....+. .+ ......+.+||++|++.+.......+..+|+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~ 75 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE------FPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHV 75 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC------CCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCE
Confidence 589999999999999999996321 11122222222211 12 2234568899999998877666667789999
Q ss_pred EEEEEeCCCCCCHHHHHH-HHHHHHhcCCCCCCeEEEEEeCCCCCCc------------cCHHHHHHHhCccccccceeE
Q 028776 95 VVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDA------------VSADELARYLDLKKLDERVCM 161 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~ 161 (204)
+++++|+++.++|+.+.. |+..+.... .+.|+++|+||+|+... ...++.....+ .....+
T Consensus 76 ~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 149 (187)
T cd04129 76 ILIGFAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAK----EIGAKK 149 (187)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHH----HhCCcE
Confidence 999999999999998874 665554433 46999999999998542 11222322222 112247
Q ss_pred EEeecccCCCChHHHHHHHHHHHHh
Q 028776 162 FEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 162 ~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
++++||++|.|++++|+++.+.+..
T Consensus 150 ~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 150 YMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999977643
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-26 Score=154.37 Aligned_cols=162 Identities=23% Similarity=0.404 Sum_probs=134.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EEE-----------eCcEEEEEEcCCCcchHHH
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV-----------SNSKLVFWDLGGQPGLRSI 84 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~~D~~g~~~~~~~ 84 (204)
+|.+.+|+.|+||||++.+++ .+.+...+.+|+++++.+ +.+ ..+.+++|||+|+++++++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YT------D~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYT------DGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred HHHHhhccCCCCceEEEEEec------CCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 577889999999999999884 366666777777777664 222 2456899999999999999
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEE
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMF 162 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~ 162 (204)
...+++.+-++++++|++++.||.+...|+.++..+...++.-+|+++||+|+.+ .++.++...... ..++|+
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~-----kyglPY 158 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALAD-----KYGLPY 158 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHH-----HhCCCe
Confidence 9999999999999999999999999999999998877778889999999999976 444444444443 567899
Q ss_pred EeecccCCCChHHHHHHHHHHHHhchhH
Q 028776 163 EAVSGYDGFGIKESVEWLVEVMERSKRT 190 (204)
Q Consensus 163 ~~~Sa~~~~~v~~l~~~i~~~i~~~~~~ 190 (204)
+++||-+|.||++.++.+...+.++.++
T Consensus 159 fETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 159 FETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred eeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888766554
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=153.90 Aligned_cols=157 Identities=26% Similarity=0.328 Sum_probs=107.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCc-EEEEEEcCCCcc-------hHHHHHHhcc
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPG-------LRSIWEKYYE 90 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~g~~~-------~~~~~~~~~~ 90 (204)
+|+++|.+|||||||+++|.+......... ..+.....+.+...+. .+.+|||||... ....+...+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~----~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYP----FTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIE 77 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCC----ccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHH
Confidence 589999999999999999975332111111 1122223333445555 899999999632 1222223345
Q ss_pred cCCEEEEEEeCCCC-CCHHHHHHHHHHHHhcCC-CCCCeEEEEEeCCCCCCccCHHH-HHHHhCccccccceeEEEeecc
Q 028776 91 EAHAVVFVIDAACP-SRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSADE-LARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 91 ~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
.+|++++|+|++++ +++.....|...+..... ...+|+++|+||+|+.+.....+ ...... .....+++++|+
T Consensus 78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa 153 (170)
T cd01898 78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK----ELWGKPVFPISA 153 (170)
T ss_pred hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh----hCCCCCEEEEec
Confidence 69999999999999 788888888777765432 24689999999999976443333 222222 112467899999
Q ss_pred cCCCChHHHHHHHHHH
Q 028776 168 YDGFGIKESVEWLVEV 183 (204)
Q Consensus 168 ~~~~~v~~l~~~i~~~ 183 (204)
+++.|++++++++.+.
T Consensus 154 ~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 154 LTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998864
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=151.43 Aligned_cols=158 Identities=22% Similarity=0.187 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe-CcEEEEEEcCCCcchHHHHHHhcccCCEEE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 96 (204)
+.|+++|++|||||||+++|++....... .......+....+...... +..+.+|||||++.+.......+.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLP-EEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccch-hhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999999753211110 0011122344444444444 678999999999988877777888999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC----HHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 97 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
+|+|+++... ......+. .+... ...|+++|+||+|+..... .+++.+.+.... ....+++++||+++.|
T Consensus 80 ~V~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEeCCCCcC
Confidence 9999987321 12222222 12221 2249999999999975322 223333332111 1356899999999999
Q ss_pred hHHHHHHHHH
Q 028776 173 IKESVEWLVE 182 (204)
Q Consensus 173 v~~l~~~i~~ 182 (204)
++++++.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-24 Score=164.70 Aligned_cols=164 Identities=24% Similarity=0.303 Sum_probs=117.4
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE-eCcEEEEEEcCCCcc-------hHHHHHH
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPG-------LRSIWEK 87 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~ 87 (204)
--..|+++|.+|||||||++++++......... ..|.......+.+ +..++.+||+||... ....+..
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~yp----fTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flr 232 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYP----FTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLK 232 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCC----CceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHH
Confidence 346799999999999999999976433222222 2344445555666 456899999999532 3334445
Q ss_pred hcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCC-CCCCeEEEEEeCCCCCCccCHH--HHHHHhCccccccceeEEEe
Q 028776 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSAD--ELARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 164 (204)
.++.+|++++|+|+++.++++....|...+..+.. ..++|+++|+||+|+.+..... +...... ....++++
T Consensus 233 hie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~-----~~~~~i~~ 307 (335)
T PRK12299 233 HIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELA-----ALGGPVFL 307 (335)
T ss_pred HhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHH-----hcCCCEEE
Confidence 56789999999999988888888888777765432 2468999999999997543221 2222221 22367899
Q ss_pred ecccCCCChHHHHHHHHHHHHhch
Q 028776 165 VSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 165 ~Sa~~~~~v~~l~~~i~~~i~~~~ 188 (204)
+||++++|+++++++|.+.+.+..
T Consensus 308 iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 308 ISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999886543
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=153.29 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=106.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCC-CCCCccccc------cceee----eEE-----EEeCcEEEEEEcCCCcchH
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-LPPDRIVPT------VGLNI----GRI-----EVSNSKLVFWDLGGQPGLR 82 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~------~~~~~----~~~-----~~~~~~~~~~D~~g~~~~~ 82 (204)
+|+++|++++|||||+++|++....... .....+.++ .+... ... ......+.+|||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 6899999999999999999764321100 011111111 11111 111 2346678899999999999
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCH---HHHHHHhCccccccce
Q 028776 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---DELARYLDLKKLDERV 159 (204)
Q Consensus 83 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 159 (204)
..+..+++.+|++++|+|++++.++.....|.. ... .++|+++|+||+|+...... +++.+.++ ...
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLG-----LDP 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhC-----CCc
Confidence 999999999999999999998766655544432 221 36899999999998653221 22222222 122
Q ss_pred eEEEeecccCCCChHHHHHHHHHHH
Q 028776 160 CMFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 160 ~~~~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
..++++||++|.|++++++++.+.+
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998775
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-24 Score=155.31 Aligned_cols=156 Identities=23% Similarity=0.293 Sum_probs=106.6
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCc-EEEEEEcCCCcc---------hHHH
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPG---------LRSI 84 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~g~~~---------~~~~ 84 (204)
+..++|+++|++|||||||++++++.... ......++.......+...+. .+.+|||||... +...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVY----AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhc----cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHH
Confidence 45689999999999999999999764211 111222333333334444443 899999999632 1111
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEe
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (204)
...+..+|++++|+|++++.++.....|...+ ......++|+++|+||+|+....... ..+ .....++++
T Consensus 115 -~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~-----~~~~~~~~~ 184 (204)
T cd01878 115 -LEEVAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ERL-----EAGRPDAVF 184 (204)
T ss_pred -HHHHhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HHh-----hcCCCceEE
Confidence 12356799999999999988877665555433 33333568999999999996643222 111 133457999
Q ss_pred ecccCCCChHHHHHHHHHHH
Q 028776 165 VSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 165 ~Sa~~~~~v~~l~~~i~~~i 184 (204)
+||+++.|+++++++|.+.+
T Consensus 185 ~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 185 ISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred EEcCCCCCHHHHHHHHHhhC
Confidence 99999999999999998753
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=138.89 Aligned_cols=169 Identities=22% Similarity=0.303 Sum_probs=136.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEE
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 96 (204)
.+|-.++|+-|+|||+|+.+++.+.. ...-++.+....+....+++...+++.+|||.|+++++.....+++++.+.+
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf--madcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHH--hhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 47889999999999999999965321 1222334444444445556677889999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCCChH
Q 028776 97 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 174 (204)
Q Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 174 (204)
.|||+.....+..+..|+....... .++.-+++++||.|+.. .+..++.+.+.. ..+..|.++||++|+|++
T Consensus 89 mvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~fae-----engl~fle~saktg~nve 162 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAE-----ENGLMFLEASAKTGQNVE 162 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHh-----hcCeEEEEecccccCcHH
Confidence 9999999999999999987765433 36788899999999976 667788888876 677889999999999999
Q ss_pred HHHHHHHHHHHhchhHHHH
Q 028776 175 ESVEWLVEVMERSKRTEML 193 (204)
Q Consensus 175 ~l~~~i~~~i~~~~~~~~~ 193 (204)
+.|-.-...+.+......+
T Consensus 163 dafle~akkiyqniqdgsl 181 (215)
T KOG0097|consen 163 DAFLETAKKIYQNIQDGSL 181 (215)
T ss_pred HHHHHHHHHHHHhhhcCcc
Confidence 9999998888776654433
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=140.68 Aligned_cols=166 Identities=37% Similarity=0.663 Sum_probs=148.3
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeC-cEEEEEEcCCCcchHHHHHHhccc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
+++++++|+++|-.++|||||+++|. +.....+.+|.+++...+.+++ .++.+||.+|+...+..|..++.+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~-------sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyen 85 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLK-------SEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYEN 85 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHc-------cCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhc
Confidence 56789999999999999999999994 3345566788898888888876 899999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
.|++|+|+|+++...|+++...+..++........|+.+..||.|+.-....+++...++........+++.+||+..++
T Consensus 86 vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 86 VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLE 165 (185)
T ss_pred cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCcccccc
Confidence 99999999999999999999998888887776789999999999999988899999999877777788899999999999
Q ss_pred ChHHHHHHHHHHHH
Q 028776 172 GIKESVEWLVEVME 185 (204)
Q Consensus 172 ~v~~l~~~i~~~i~ 185 (204)
|+.+-..|+.+..+
T Consensus 166 g~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 166 GSTDGSDWVQSNPE 179 (185)
T ss_pred CccCcchhhhcCCC
Confidence 99999999876554
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=151.84 Aligned_cols=146 Identities=18% Similarity=0.247 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE-------eCcEEEEEEcCCCcchHHHHHHh
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV-------SNSKLVFWDLGGQPGLRSIWEKY 88 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~D~~g~~~~~~~~~~~ 88 (204)
+||+++|..|||||||++++.+ +.....+.+|++..+. .+.+ ..+.+.+|||+|++.+......+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~------~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~ 74 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK------NQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVF 74 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHH
Confidence 5899999999999999999964 3333445556654332 2222 24578999999999999999999
Q ss_pred cccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------CCCCCeEEEEEeCCCCCCc--cCHHHHHH
Q 028776 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE------------------DLQGAPLLILANKQDLPDA--VSADELAR 148 (204)
Q Consensus 89 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~Dl~~~--~~~~~~~~ 148 (204)
++++|++|+|||+++++||+.+..|+..+.... ....+|+|+|+||+|+.++ .+.+....
T Consensus 75 yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~ 154 (202)
T cd04102 75 YNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLT 154 (202)
T ss_pred hCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhh
Confidence 999999999999999999999999998886532 1246899999999999653 22222222
Q ss_pred HhCccccccceeEEEeecccCC
Q 028776 149 YLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 149 ~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
..+ ......+.+.++.+++++
T Consensus 155 ~~~-~ia~~~~~~~i~~~c~~~ 175 (202)
T cd04102 155 ARG-FVAEQGNAEEINLNCTNG 175 (202)
T ss_pred Hhh-hHHHhcCCceEEEecCCc
Confidence 111 112234455666676654
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=151.24 Aligned_cols=166 Identities=23% Similarity=0.281 Sum_probs=115.0
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCC------------C--CCccccccceeeeEEE--EeCcEEEEEEcCCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------------P--PDRIVPTVGLNIGRIE--VSNSKLVFWDLGGQ 78 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~ 78 (204)
++.++|+++|+.++|||||+++|+......... . ......+......... .....+.++||||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 356899999999999999999996544321110 0 0111234444455566 77889999999999
Q ss_pred cchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCcc---CHHHHHHHh-Cccc
Q 028776 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELARYL-DLKK 154 (204)
Q Consensus 79 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~-~~~~ 154 (204)
.++...+...+..+|++++|+|+.++-. ......+..... .++|+|+|+||+|+.... ..+++...+ +...
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cceeecccceecccccceeeeecccccc-cccccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 9999988899999999999999987633 233333333332 468899999999998321 122222111 1111
Q ss_pred ccc-ceeEEEeecccCCCChHHHHHHHHHHHH
Q 028776 155 LDE-RVCMFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 155 ~~~-~~~~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
... ...+++++||.+|.|+++|++.|.+.++
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 222 3689999999999999999999998765
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=160.73 Aligned_cols=161 Identities=24% Similarity=0.307 Sum_probs=113.0
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeC-cEEEEEEcCCCcc-------hHHHHHH
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEK 87 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~ 87 (204)
....|+++|.+|||||||++++++.......... +|.......+.+.+ .++.+||+||... ....+..
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~f----TT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flr 231 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPF----TTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLK 231 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCC----CccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHH
Confidence 3468999999999999999999764332222222 23334444455655 7899999999632 2333444
Q ss_pred hcccCCEEEEEEeCCCC---CCHHHHHHHHHHHHhcC-CCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEE
Q 028776 88 YYEEAHAVVFVIDAACP---SRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE 163 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (204)
.++.+|++++|+|+++. ++++....|...+..+. ...++|+++|+||+|+......++..+.+. .....+++
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi 307 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVF 307 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEE
Confidence 45679999999999976 56777777766665442 124689999999999976533333333332 11235799
Q ss_pred eecccCCCChHHHHHHHHHHH
Q 028776 164 AVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 164 ~~Sa~~~~~v~~l~~~i~~~i 184 (204)
++||++++|++++++++.+.+
T Consensus 308 ~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 308 PISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEccCCcCHHHHHHHHHHHh
Confidence 999999999999999998765
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-23 Score=144.84 Aligned_cols=158 Identities=19% Similarity=0.207 Sum_probs=105.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE---eCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
+.|+++|++|+|||||+++|+...... ......+.......... ....+.+|||||+..+...+...+..+|+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~ 76 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA----GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDI 76 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc----ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCE
Confidence 469999999999999999996532111 11111222233333444 36789999999999888888888899999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHh---Cccc--cccceeEEEeecccC
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL---DLKK--LDERVCMFEAVSGYD 169 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~Sa~~ 169 (204)
+++|+|+++.... .....+..+ .. .++|+++|+||+|+.... .+.+...+ .... ......+++++|+++
T Consensus 77 il~v~d~~~~~~~-~~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (168)
T cd01887 77 AILVVAADDGVMP-QTIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKT 150 (168)
T ss_pred EEEEEECCCCccH-HHHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeeccc
Confidence 9999999875422 222222222 22 468999999999987532 22222211 1110 112356899999999
Q ss_pred CCChHHHHHHHHHHHH
Q 028776 170 GFGIKESVEWLVEVME 185 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~ 185 (204)
|.|++++++++.+...
T Consensus 151 ~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 151 GEGIDDLLEAILLLAE 166 (168)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999987654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-24 Score=139.72 Aligned_cols=166 Identities=36% Similarity=0.635 Sum_probs=146.3
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
..+.+|.++|..|+||||+..++. .....+..++++++...+++.+.++++||.+|+.+....|+.++.+.|+
T Consensus 16 e~e~rililgldGaGkttIlyrlq-------vgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~a 88 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQ-------VGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDA 88 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcc-------cCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccce
Confidence 488999999999999999998872 2233444578888888899999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChH
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 174 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 174 (204)
+|+|+|.++.+........+..+++........+++++||.|........|+...++....+...+.++++||.+|+|++
T Consensus 89 vIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 89 VIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 99999999988777777777788877666778899999999999999999999999988888888999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 028776 175 ESVEWLVEVMERS 187 (204)
Q Consensus 175 ~l~~~i~~~i~~~ 187 (204)
+.++|+.+.+++.
T Consensus 169 ~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 169 PAMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988654
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-25 Score=144.87 Aligned_cols=156 Identities=28% Similarity=0.470 Sum_probs=123.7
Q ss_pred EEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EEE--eCcEEEEEEcCCCcchHHHHHHhcccCCEEEE
Q 028776 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (204)
Q Consensus 22 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 97 (204)
++|+.++|||+|+-++.. .......+.+|+++++.. +.. ..+++++|||.|++++++....+++.+|+.++
T Consensus 2 llgds~~gktcllir~kd-----gafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~alll 76 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKD-----GAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLL 76 (192)
T ss_pred ccccCccCceEEEEEecc-----CceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeee
Confidence 689999999999877731 122345556777776653 333 34678999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCCChHH
Q 028776 98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 175 (204)
+||+.+..||++.+.|+.++-.+.. ..+.+.+++||+|+.+ .+..++-..... ..++||+++||++|.|++.
T Consensus 77 lydiankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~-----~y~ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 77 LYDIANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAE-----AYGIPFMETSAKTGFNVDL 150 (192)
T ss_pred eeecccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHH-----HHCCCceeccccccccHhH
Confidence 9999999999999999998876643 5789999999999965 333333333332 4568999999999999999
Q ss_pred HHHHHHHHHHhch
Q 028776 176 SVEWLVEVMERSK 188 (204)
Q Consensus 176 l~~~i~~~i~~~~ 188 (204)
.|-.|.+.+.+..
T Consensus 151 af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 151 AFLAIAEELKKLK 163 (192)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998886544
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=143.05 Aligned_cols=144 Identities=24% Similarity=0.350 Sum_probs=101.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch------HHHHHHhc--
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL------RSIWEKYY-- 89 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~-- 89 (204)
++|+++|.||||||||+|+|++....... ....|.....+.+...+..+.++|+||.-+. ......++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n----~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGN----WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEE----STTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecC----CCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence 58999999999999999999886533222 2334555566677788899999999993211 22333333
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC----ccCHHHHHHHhCccccccceeEEEee
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFEAV 165 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (204)
.+.|++++|+|+++. +.......++... ++|+|+|+||+|+.. ..+.+.+.+.++ .|++++
T Consensus 77 ~~~D~ii~VvDa~~l---~r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------~pvi~~ 141 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL---ERNLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSERLG--------VPVIPV 141 (156)
T ss_dssp TSSSEEEEEEEGGGH---HHHHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHHHHT--------S-EEEE
T ss_pred cCCCEEEEECCCCCH---HHHHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHHHhC--------CCEEEE
Confidence 679999999999874 3333444445443 699999999999976 345666666664 689999
Q ss_pred cccCCCChHHHHHHH
Q 028776 166 SGYDGFGIKESVEWL 180 (204)
Q Consensus 166 Sa~~~~~v~~l~~~i 180 (204)
||++++|++++++.|
T Consensus 142 sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 142 SARTGEGIDELKDAI 156 (156)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred EeCCCcCHHHHHhhC
Confidence 999999999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=158.69 Aligned_cols=153 Identities=25% Similarity=0.306 Sum_probs=106.0
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE-eCcEEEEEEcCCCc---------chHHHH
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQP---------GLRSIW 85 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~---------~~~~~~ 85 (204)
..++|+++|.+|+|||||+++|++... ........|.......+.. ++..+.+|||+|.. .+...
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~----~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t- 262 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV----YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT- 262 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce----eeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-
Confidence 459999999999999999999976321 1112233444445555556 46789999999962 22222
Q ss_pred HHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEee
Q 028776 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165 (204)
Q Consensus 86 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (204)
...+.++|++++|+|++++.+++....|.. ++......++|+++|+||+|+.+.. ++..... ...+++++
T Consensus 263 le~~~~ADlil~VvD~s~~~~~~~~~~~~~-~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------~~~~~i~i 332 (351)
T TIGR03156 263 LEEVREADLLLHVVDASDPDREEQIEAVEK-VLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE------GYPEAVFV 332 (351)
T ss_pred HHHHHhCCEEEEEEECCCCchHHHHHHHHH-HHHHhccCCCCEEEEEEeecCCChH---hHHHHHh------CCCCEEEE
Confidence 224678999999999999987766654433 3333333478999999999996532 2221111 11357899
Q ss_pred cccCCCChHHHHHHHHHH
Q 028776 166 SGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 166 Sa~~~~~v~~l~~~i~~~ 183 (204)
||++|.|+++++++|.+.
T Consensus 333 SAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 333 SAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EccCCCCHHHHHHHHHhh
Confidence 999999999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=140.76 Aligned_cols=154 Identities=23% Similarity=0.290 Sum_probs=111.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE--EEEeC--cEEEEEEcCCCcchHHHHHHhcccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|++|+|||||++++.... ......++....... +..++ ..+.+||+||+..+...+....+.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 74 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAV 74 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhh
Confidence 4799999999999999999996533 111222233323322 44555 7789999999999988888888899
Q ss_pred CEEEEEEeCCCC-CCHHHHH-HHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 93 HAVVFVIDAACP-SRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
+.++.++|.... .++.... .+...+..... .+.|+++++||+|+.......+....+. .....+++++||++|
T Consensus 75 ~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~sa~~~ 149 (161)
T TIGR00231 75 ESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFA----KLNGEPIIPLSAETG 149 (161)
T ss_pred hEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHh----hccCCceEEeecCCC
Confidence 999999999876 6665554 55555554443 2789999999999976443444444443 223456999999999
Q ss_pred CChHHHHHHHH
Q 028776 171 FGIKESVEWLV 181 (204)
Q Consensus 171 ~~v~~l~~~i~ 181 (204)
.|+++++++|.
T Consensus 150 ~gv~~~~~~l~ 160 (161)
T TIGR00231 150 KNIDSAFKIVE 160 (161)
T ss_pred CCHHHHHHHhh
Confidence 99999999874
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=145.09 Aligned_cols=162 Identities=23% Similarity=0.254 Sum_probs=113.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCC------------ccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHH
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD------------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE 86 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 86 (204)
+|+++|.+|+|||||+++|++........... ....+..............+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999997654332110000 011223333344556677899999999999888888
Q ss_pred HhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCH----HHHHHHhCcccc-------
Q 028776 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLKKL------- 155 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~------- 155 (204)
..+..+|++++|+|+.++.+... ..++..... .+.|+++|+||+|+..+... .++...++....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 88999999999999988764432 233333322 47899999999999864333 333344432211
Q ss_pred --ccceeEEEeecccCCCChHHHHHHHHHHHH
Q 028776 156 --DERVCMFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 156 --~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
+....+++++||++|.|+++++.++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 235688999999999999999999998864
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-23 Score=150.57 Aligned_cols=164 Identities=17% Similarity=0.185 Sum_probs=104.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE--------------------------------
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-------------------------------- 65 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 65 (204)
++|+++|+.|+|||||+..+.+...+........ ..++...+....+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELER-NITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET 79 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEc-CCceeecccccccccccCcCCCCccccccccccccccccccCCcc
Confidence 4799999999999999999965432211111110 0111111111110
Q ss_pred -eCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCH-
Q 028776 66 -SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA- 143 (204)
Q Consensus 66 -~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~- 143 (204)
....+.+|||||++.+...+...+..+|++++|+|+.++.........+..+... ...|+|+|+||+|+......
T Consensus 80 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 80 KLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred ccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHH
Confidence 1267899999999999888888888999999999998742111222222222211 23589999999999753322
Q ss_pred ---HHHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHHHHhc
Q 028776 144 ---DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 144 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
+++...+... .....+++++||++|+|++++++++.+.+++.
T Consensus 157 ~~~~~i~~~~~~~--~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 157 ENYEQIKKFVKGT--IAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHhcc--ccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 2222222211 12356799999999999999999999877653
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-23 Score=148.94 Aligned_cols=164 Identities=20% Similarity=0.154 Sum_probs=105.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccC-CCCCCCC--ccccccceeeeEEEE--------------eCcEEEEEEcCCCcc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN-VEGLPPD--RIVPTVGLNIGRIEV--------------SNSKLVFWDLGGQPG 80 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~ 80 (204)
++|+++|++|+|||||+++|+..-.. ....... .-..|.+..+....+ ....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999752100 0000000 011233333322322 267899999999977
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC----HHHHHHHhCccc--
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKK-- 154 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~-- 154 (204)
+..........+|++++|+|+.+.........+. +... .+.|+++|+||+|+..... .+++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6665555667799999999998754433222221 1222 2579999999999975322 233333222111
Q ss_pred cccceeEEEeecccCCCChHHHHHHHHHHHHh
Q 028776 155 LDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 155 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
......+++++||++|.|++++++.+.+.+..
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11245789999999999999999999988754
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-23 Score=143.29 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=92.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCc-----chHHHHHHhcccCC
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-----GLRSIWEKYYEEAH 93 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d 93 (204)
||+++|++|+|||||++++.+... .+.++.+.. +.. .+|||||+. .+.... ..++++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--------~~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--------LYKKTQAVE-----YND---GAIDTPGEYVENRRLYSALI-VTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--------ccccceeEE-----EcC---eeecCchhhhhhHHHHHHHH-HHhhcCC
Confidence 899999999999999999964321 122333222 222 689999973 222232 3578999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC-ccCHHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
++++|+|++++.++.. ..|.. .. ..|+++|+||+|+.+ ....++....+.. ....+++++||++|.|
T Consensus 65 ~vilv~d~~~~~s~~~-~~~~~-~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~g 132 (142)
T TIGR02528 65 VIALVQSATDPESRFP-PGFAS-IF------VKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEISSVDEQG 132 (142)
T ss_pred EEEEEecCCCCCcCCC-hhHHH-hc------cCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEecCCCCC
Confidence 9999999999988754 22322 11 249999999999965 3334444444431 1123689999999999
Q ss_pred hHHHHHHHH
Q 028776 173 IKESVEWLV 181 (204)
Q Consensus 173 v~~l~~~i~ 181 (204)
++++|+++.
T Consensus 133 i~~l~~~l~ 141 (142)
T TIGR02528 133 LEALVDYLN 141 (142)
T ss_pred HHHHHHHHh
Confidence 999999874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=157.69 Aligned_cols=162 Identities=19% Similarity=0.286 Sum_probs=108.4
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch-H-------HHHH
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-R-------SIWE 86 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~-------~~~~ 86 (204)
.+.++|+++|.+|||||||+++|.+.... ........|.......+..++.++.+|||||.... . +...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~---ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS---IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee---eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 35579999999999999999999753321 11112223333334446667789999999997422 1 1122
Q ss_pred HhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeec
Q 028776 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
..+..+|++++|+|+.+. +.....++...+.. .+.|.|+|+||+|+... ...++.+.+... .....++++|
T Consensus 127 ~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iS 197 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPIS 197 (339)
T ss_pred HHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEe
Confidence 346789999999997653 44444433333332 24677899999998654 344555554321 1235689999
Q ss_pred ccCCCChHHHHHHHHHHHHhch
Q 028776 167 GYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~i~~~~ 188 (204)
|++|.|+++++++|.+.+++..
T Consensus 198 Aktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 198 ALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred ccCccCHHHHHHHHHHhCCCCC
Confidence 9999999999999999886543
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=153.12 Aligned_cols=158 Identities=18% Similarity=0.139 Sum_probs=101.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch----H----HHHHHhcc
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----R----SIWEKYYE 90 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~----~~~~~~~~ 90 (204)
+|+++|.+|||||||+|+|++...... ......|...........+.++.+|||||.... . ......+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~v---s~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISIT---SPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeec---CCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999976432110 111111111112223344567999999996432 1 12345678
Q ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
.+|++++|+|+++..+.. .++...+.. .+.|+++|+||+|+.......+....+... ....+++++||++|
T Consensus 79 ~aDvvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g 149 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTG 149 (270)
T ss_pred hCCEEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCC
Confidence 899999999999876654 222333332 368999999999996432222111111111 11227899999999
Q ss_pred CChHHHHHHHHHHHHhch
Q 028776 171 FGIKESVEWLVEVMERSK 188 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~~~~ 188 (204)
.|++++++.+.+.+++..
T Consensus 150 ~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 150 DNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 999999999999886544
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=146.14 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=101.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhc---cCCCC---CC------CCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHH
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY---SNVEG---LP------PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW 85 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~---~~~~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 85 (204)
-+|+++|++|+|||||+++|+... ..... .. ......+.......+......+.+|||||+.++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 489999999999999999997521 11110 00 0001122222233456678899999999999999999
Q ss_pred HHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC---HHHHHHHhCccc--ccccee
Q 028776 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKK--LDERVC 160 (204)
Q Consensus 86 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~--~~~~~~ 160 (204)
..+++++|++++|+|+.+.. +.....++..... .++|+++|+||+|+..... .+++...+.... ....+.
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998742 3333334433322 3689999999999965322 233334332111 122357
Q ss_pred EEEeecccCCCChHHH
Q 028776 161 MFEAVSGYDGFGIKES 176 (204)
Q Consensus 161 ~~~~~Sa~~~~~v~~l 176 (204)
+++++||++|.|+.++
T Consensus 158 ~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 158 PVLYASAKNGWASLNL 173 (194)
T ss_pred CEEEeehhcccccccc
Confidence 8999999999776433
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=162.19 Aligned_cols=166 Identities=26% Similarity=0.230 Sum_probs=110.7
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCc----------chHHH-
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----------GLRSI- 84 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~- 84 (204)
..++|+++|.+|+|||||+++|++..... .......+.......+..++..+.+|||||.. .+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~---~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV---VDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc---ccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHH
Confidence 46899999999999999999997643210 11111122222233455667788999999952 22222
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEe
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (204)
....++.+|++++|+|++++.++.... ++..+.. .++|+|+|+||+|+............+..........++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 361 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVN 361 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEE
Confidence 123568899999999999988876653 3333332 46899999999999753322222222221111233467899
Q ss_pred ecccCCCChHHHHHHHHHHHHhchh
Q 028776 165 VSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 165 ~Sa~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
+||++|.|++++|+.+.+.+.....
T Consensus 362 ~SAk~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 362 ISAKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988865444
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-22 Score=138.96 Aligned_cols=147 Identities=25% Similarity=0.226 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHH--------HHHHhc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYY 89 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 89 (204)
++|+++|++|+|||||++++++......+ .....+.............++.+|||||...... .....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS---DIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc---CCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 58999999999999999999754321111 1112222233334555677899999999654422 233456
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
..+|++++|+|++++.+......+.. ....|+++|+||+|+...... .......+++++||++
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKT 141 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCC
Confidence 78999999999998877665543322 257999999999999764332 1123467899999999
Q ss_pred CCChHHHHHHHHHHH
Q 028776 170 GFGIKESVEWLVEVM 184 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i 184 (204)
+.|+++++++|.+.+
T Consensus 142 ~~~v~~l~~~l~~~~ 156 (157)
T cd04164 142 GEGLDELKEALLELA 156 (157)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999988754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-24 Score=144.57 Aligned_cols=163 Identities=20% Similarity=0.370 Sum_probs=137.1
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE----EEEeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
..+|++|+|..++||||++++++. +.+...+..+++.++.+ +..++.+..+|||+|++.+......++++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCk------gifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrg 92 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRG 92 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhc------cccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcc
Confidence 569999999999999999999964 66667777777777654 34467778899999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+.+.++|++-++..||+....|.+.+.... ..+|.++|-||+|+.+ .....++..... .....++-+|+++
T Consensus 93 aqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak-----~l~~RlyRtSvke 165 (246)
T KOG4252|consen 93 AQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAK-----KLHKRLYRTSVKE 165 (246)
T ss_pred ccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHH-----Hhhhhhhhhhhhh
Confidence 999999999999999999999999998776 5899999999999987 444555555544 3335678899999
Q ss_pred CCChHHHHHHHHHHHHhchhHH
Q 028776 170 GFGIKESVEWLVEVMERSKRTE 191 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~~~~~~ 191 (204)
..|+..+|..+.+++.+...++
T Consensus 166 d~NV~~vF~YLaeK~~q~~kq~ 187 (246)
T KOG4252|consen 166 DFNVMHVFAYLAEKLTQQKKQS 187 (246)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997766653
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.7e-23 Score=148.90 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=99.4
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCC-----------CcchHH
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRS 83 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~ 83 (204)
...++|+++|.+|+|||||++++++.... ....+............ .+.+||||| ++.+..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~------~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR------VGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc------cCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHH
Confidence 45789999999999999999999753211 11111111111122222 689999999 344544
Q ss_pred HHHHhc----ccCCEEEEEEeCCCCCCHH---------HHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCcc--CHHHHHH
Q 028776 84 IWEKYY----EEAHAVVFVIDAACPSRFE---------DSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADELAR 148 (204)
Q Consensus 84 ~~~~~~----~~~d~ii~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~ 148 (204)
.+..++ ..++++++|+|......+. .....+...+.. .++|+++|+||+|+.... ..+++.+
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 155 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAE 155 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHH
Confidence 444444 3467888999886432110 001111222222 468999999999996533 2333444
Q ss_pred HhCccc-cccceeEEEeecccCCCChHHHHHHHHHHHHhchhH
Q 028776 149 YLDLKK-LDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRT 190 (204)
Q Consensus 149 ~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~~~ 190 (204)
.++... ......+++++||++| |+++++++|.+.+.+....
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~~ 197 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKRD 197 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcccc
Confidence 433210 0011236899999999 9999999999988655443
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=143.79 Aligned_cols=155 Identities=23% Similarity=0.260 Sum_probs=104.1
Q ss_pred EEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe-CcEEEEEEcCCCcch-------HHHHHHhcccCC
Q 028776 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGL-------RSIWEKYYEEAH 93 (204)
Q Consensus 22 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~-------~~~~~~~~~~~d 93 (204)
++|++|||||||+++|.+.... .......|........... +..+.+|||||.... ...+...++.+|
T Consensus 1 iiG~~~~GKStll~~l~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d 76 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK----VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRAD 76 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc----ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccC
Confidence 5899999999999999764221 1111122333333445566 788999999996321 123344567899
Q ss_pred EEEEEEeCCCC------CCHHHHHHHHHHHHhcCC------CCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeE
Q 028776 94 AVVFVIDAACP------SRFEDSKTALEKVLRNED------LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM 161 (204)
Q Consensus 94 ~ii~v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (204)
++++|+|+.+. .++.....|...+..... ..++|+++|+||+|+.......+..... .......+
T Consensus 77 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~ 153 (176)
T cd01881 77 AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE---LALEEGAE 153 (176)
T ss_pred EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH---HhcCCCCC
Confidence 99999999988 466776666666654432 1468999999999997643333321011 11234466
Q ss_pred EEeecccCCCChHHHHHHHHHH
Q 028776 162 FEAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 162 ~~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
++++||+++.|++++++++...
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHhh
Confidence 9999999999999999998754
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-22 Score=158.96 Aligned_cols=166 Identities=24% Similarity=0.304 Sum_probs=113.3
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc-------hHHHHHH
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEK 87 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~ 87 (204)
+...+|+|+|.+|||||||+++|++..... .....+|.......+...+.++.+||+||... ....+..
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkI----adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLr 232 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKI----ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLR 232 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccc----cccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHH
Confidence 345789999999999999999997643221 22223455556666777888999999999532 1122334
Q ss_pred hcccCCEEEEEEeCCCC----CCHHHHHHHHHHHHhcC----------CCCCCeEEEEEeCCCCCCccCH-HHHHHHhCc
Q 028776 88 YYEEAHAVVFVIDAACP----SRFEDSKTALEKVLRNE----------DLQGAPLLILANKQDLPDAVSA-DELARYLDL 152 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~ 152 (204)
.++.+|++++|+|+++. +.+.....+...+..+. ....+|+|+|+||+|+.+.... +.+...+.
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~- 311 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE- 311 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH-
Confidence 46789999999999753 34444444433343322 2246899999999999653222 22222222
Q ss_pred cccccceeEEEeecccCCCChHHHHHHHHHHHHhchh
Q 028776 153 KKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 153 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
...++++++||+++.|+++++.+|.+.+...+.
T Consensus 312 ----~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 312 ----ARGWPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred ----HcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 224689999999999999999999999876543
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-22 Score=139.95 Aligned_cols=148 Identities=23% Similarity=0.252 Sum_probs=98.9
Q ss_pred EEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHH------HHHHhc--ccCC
Q 028776 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKYY--EEAH 93 (204)
Q Consensus 22 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d 93 (204)
++|.+|+|||||++++++...... .....+.......+..++..+.+|||||+..+.. ....++ ..+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG----NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc----CCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCc
Confidence 589999999999999976421111 1112233333344556667899999999865442 344445 4899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCCh
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 173 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 173 (204)
++++|+|+.+++.. ..++..+.. .++|+++|+||+|+.+..........+. ...+.+++++|++++.|+
T Consensus 77 ~vi~v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~ 145 (158)
T cd01879 77 LIVNVVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGI 145 (158)
T ss_pred EEEEEeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCH
Confidence 99999999886432 233333332 3689999999999976432221112221 122457999999999999
Q ss_pred HHHHHHHHHHH
Q 028776 174 KESVEWLVEVM 184 (204)
Q Consensus 174 ~~l~~~i~~~i 184 (204)
+++++++.+.+
T Consensus 146 ~~l~~~l~~~~ 156 (158)
T cd01879 146 DELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=137.12 Aligned_cols=159 Identities=22% Similarity=0.176 Sum_probs=104.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch----------H-HHH
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----------R-SIW 85 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~-~~~ 85 (204)
.++|+++|++|+|||||++++++......... ...+.......+...+..+.+|||||.... . ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDI---AGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCC---CCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHH
Confidence 57999999999999999999976432111111 111111222234456677899999996432 1 112
Q ss_pred HHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeEEE
Q 028776 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFE 163 (204)
Q Consensus 86 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~ 163 (204)
...+..+|++++|+|++++.+.... .++..... .+.|+++++||+|+... ...+++...+..........+++
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV 153 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence 2345789999999999998775443 22222222 35899999999999765 34444444443222223356899
Q ss_pred eecccCCCChHHHHHHHHHH
Q 028776 164 AVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 164 ~~Sa~~~~~v~~l~~~i~~~ 183 (204)
++||+++.|++++++.+.+.
T Consensus 154 ~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 154 FISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEeccCCCCHHHHHHHHHHh
Confidence 99999999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=158.06 Aligned_cols=152 Identities=25% Similarity=0.278 Sum_probs=108.5
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHH--------H
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------W 85 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~ 85 (204)
.+..++|+++|.+|+|||||+++|++.... ........|.......+..++..+.+|||||....... .
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a---~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~ 288 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERA---IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERS 288 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCc---ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHH
Confidence 346699999999999999999999763211 01111222333334446667788999999997654322 2
Q ss_pred HHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEee
Q 028776 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165 (204)
Q Consensus 86 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (204)
...+..+|++++|+|++++.++.....|. . ..+.|+++|+||+|+....... .....+++++
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~-~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~i 350 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILE-E------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRI 350 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHH-h------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEE
Confidence 34578899999999999988776543332 2 2578999999999996533221 1223568999
Q ss_pred cccCCCChHHHHHHHHHHHHh
Q 028776 166 SGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 166 Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
||++|.|+++++++|.+.+..
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998854
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-22 Score=137.17 Aligned_cols=150 Identities=28% Similarity=0.413 Sum_probs=109.3
Q ss_pred EEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe----CcEEEEEEcCCCcchHHHHHHhcccCCEEEE
Q 028776 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (204)
Q Consensus 22 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 97 (204)
++|++|+|||||++++.+.... .....++. ......... ...+.+||+||+..........++.+|++++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-----~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 74 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-----PEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIIL 74 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-----Ccccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEE
Confidence 5899999999999999764331 11111222 233333333 6789999999998888887888899999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHH--HHhCccccccceeEEEeecccCCCChHH
Q 028776 98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELA--RYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 175 (204)
|+|++++.++.....++..........+.|+++++||+|+.......... .... .....+++++|+.++.|+++
T Consensus 75 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 75 VYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA----KELGVPYFETSAKTGENVEE 150 (157)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH----hhcCCcEEEEecCCCCChHH
Confidence 99999998887777764344444444689999999999997754433321 1111 23467899999999999999
Q ss_pred HHHHHH
Q 028776 176 SVEWLV 181 (204)
Q Consensus 176 l~~~i~ 181 (204)
++++|.
T Consensus 151 ~~~~l~ 156 (157)
T cd00882 151 LFEELA 156 (157)
T ss_pred HHHHHh
Confidence 999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=153.58 Aligned_cols=161 Identities=24% Similarity=0.340 Sum_probs=111.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe-CcEEEEEEcCCCcc-------hHHHHHHhc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG-------LRSIWEKYY 89 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~-------~~~~~~~~~ 89 (204)
..|+++|.+|||||||++++++........ ...|.......+.+. ...+.+||+||... ....+...+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~y----pfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi 234 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANY----HFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI 234 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccC----CcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH
Confidence 389999999999999999998644322222 223444455556665 67899999999532 222333445
Q ss_pred ccCCEEEEEEeCCCC---CCHHHHHHHHHHHHhcCC-CCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEee
Q 028776 90 EEAHAVVFVIDAACP---SRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (204)
+.+|++++|+|+++. ++++....|...+..+.. ..++|+++|+||+|+... .+.+..+... ...+++++
T Consensus 235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~-----l~~~i~~i 307 (424)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEK-----LGPKVFPI 307 (424)
T ss_pred hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHH-----hCCcEEEE
Confidence 679999999999864 556666666666654432 247899999999998432 2222222221 11568999
Q ss_pred cccCCCChHHHHHHHHHHHHhchh
Q 028776 166 SGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 166 Sa~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
||+++.|+++++++|.+.+.+.+.
T Consensus 308 SA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 308 SALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999998876543
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=150.25 Aligned_cols=120 Identities=21% Similarity=0.364 Sum_probs=96.7
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEEE---------------eCcEEEEEEcC
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV---------------SNSKLVFWDLG 76 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------------~~~~~~~~D~~ 76 (204)
....+||+++|+.|||||||++++.+ +.....+.+|++..+. .+.+ ..+.+.+|||+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~------g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTA 91 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVK------GSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVS 91 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhc------CCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECC
Confidence 34679999999999999999999954 3333445566665543 2332 23568999999
Q ss_pred CCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCC-----------CCCCeEEEEEeCCCCCC
Q 028776 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED-----------LQGAPLLILANKQDLPD 139 (204)
Q Consensus 77 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~Dl~~ 139 (204)
|++.+..++..+++++|++|+|+|+++.++|+.+..|+..+..... ..++|+++|+||+|+..
T Consensus 92 GqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 92 GHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred CChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 9999999999999999999999999999999999999988876531 13589999999999965
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=158.47 Aligned_cols=164 Identities=24% Similarity=0.213 Sum_probs=111.2
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHH-----------H
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS-----------I 84 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~ 84 (204)
..++|+++|.+|+|||||+++|++...... ......+.......+..++..+.+|||||...... .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~---~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIV---SDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeec---CCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHH
Confidence 358999999999999999999975321111 11111222222333555677899999999643321 1
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC-CccCHHHHHHHhCccccccceeEEE
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP-DAVSADELARYLDLKKLDERVCMFE 163 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (204)
....++.+|++++|+|+.++.+.... .++..... .++|+|+|+||+|+. +....+++...+..........+++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceE
Confidence 23457889999999999988665443 23333322 368999999999997 3333444444444333334557899
Q ss_pred eecccCCCChHHHHHHHHHHHHhc
Q 028776 164 AVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 164 ~~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
++||++|.|++++++++.+.....
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=158.90 Aligned_cols=157 Identities=22% Similarity=0.238 Sum_probs=106.6
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc--------hHHHHH
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWE 86 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~ 86 (204)
...++|+|+|.+|||||||+++|++.... ........+...........+..+.+|||||... +..++.
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~---~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~ 112 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREA---VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAE 112 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcc---cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHH
Confidence 45589999999999999999999753211 1111112233333444566778899999999652 334455
Q ss_pred HhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeec
Q 028776 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
..++.+|++++|+|+++..++.. ..+ ...+.. .++|+|+|+||+|+..... +....+. .. .. .++++|
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~-~~i-~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~-~g---~~-~~~~iS 180 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATD-EAV-ARVLRR---SGKPVILAANKVDDERGEA--DAAALWS-LG---LG-EPHPVS 180 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHH-HHHHHH---cCCCEEEEEECccCCccch--hhHHHHh-cC---CC-CeEEEE
Confidence 67889999999999998876543 222 233332 4799999999999865321 1222222 11 11 246899
Q ss_pred ccCCCChHHHHHHHHHHHHh
Q 028776 167 GYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~i~~ 186 (204)
|++|.|+++++++|.+.+.+
T Consensus 181 A~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 181 ALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred cCCCCCcHHHHHHHHhhccc
Confidence 99999999999999998855
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=137.66 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=98.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCc----chHHHHHHhcccCCE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----GLRSIWEKYYEEAHA 94 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~ 94 (204)
+|+++|++|+|||||++++.+.... ...+.. ..+... .+|||||.. .+...+...+..+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--------~~~~~~-----v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--------ARKTQA-----VEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--------CccceE-----EEECCC--CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence 7999999999999999999653210 012221 122221 279999962 333333445789999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChH
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 174 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 174 (204)
+++|+|+++.+++.. .|+..+ . .++|+++++||+|+.+ ...+.+.+.+.... ...|++++||++|+|++
T Consensus 68 il~v~d~~~~~s~~~--~~~~~~---~--~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~---~~~p~~~~Sa~~g~gi~ 136 (158)
T PRK15467 68 LIYVHGANDPESRLP--AGLLDI---G--VSKRQIAVISKTDMPD-ADVAATRKLLLETG---FEEPIFELNSHDPQSVQ 136 (158)
T ss_pred EEEEEeCCCcccccC--HHHHhc---c--CCCCeEEEEEccccCc-ccHHHHHHHHHHcC---CCCCEEEEECCCccCHH
Confidence 999999998876532 333332 1 3579999999999855 34445455443221 12589999999999999
Q ss_pred HHHHHHHHHHHhch
Q 028776 175 ESVEWLVEVMERSK 188 (204)
Q Consensus 175 ~l~~~i~~~i~~~~ 188 (204)
++++.+.+.+.+..
T Consensus 137 ~l~~~l~~~~~~~~ 150 (158)
T PRK15467 137 QLVDYLASLTKQEE 150 (158)
T ss_pred HHHHHHHHhchhhh
Confidence 99999998875543
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-21 Score=152.79 Aligned_cols=156 Identities=22% Similarity=0.262 Sum_probs=108.2
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHH--------
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-------- 84 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------- 84 (204)
..++.++|+++|++|+|||||+++|++..... .......|.......+..++..+.+|||||.......
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai---vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~ 275 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAI---VSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEK 275 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcc---cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHH
Confidence 34567999999999999999999997632110 1111122233334446677888999999997554322
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEe
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (204)
....++.+|++++|+|++++.+++.. |+..+.. .++|+|+|+||+|+... +.++. . .....++++
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~---~-----~~~~~~~~~ 340 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFF---V-----SSKVLNSSN 340 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhh---h-----hhcCCceEE
Confidence 23567889999999999998877654 5544422 36899999999999654 22111 1 122346789
Q ss_pred ecccCCCChHHHHHHHHHHHHhc
Q 028776 165 VSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 165 ~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
+||++ .|++++++.+.+.+.+.
T Consensus 341 vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHHHH
Confidence 99997 69999999999888654
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-21 Score=141.13 Aligned_cols=166 Identities=27% Similarity=0.375 Sum_probs=116.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe----CcEEEEEEcCCCcchHHHHHHhcccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|+.|||||||++++.+ ......+.++....+...... .+++.+|||+|++.+...+..++.++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~ 78 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVG------DEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGA 78 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhc------CcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCC
Confidence 48999999999999999999954 334444444444333322221 45689999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHH-HHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHH-HHHHh----------Cc-cccccce
Q 028776 93 HAVVFVIDAACPSRFED-SKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE-LARYL----------DL-KKLDERV 159 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~----------~~-~~~~~~~ 159 (204)
+++++|+|.....++.. ...|...+..... .+.|+++|+||+|+........ +.... .. .......
T Consensus 79 ~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (219)
T COG1100 79 NGILIVYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVAN 157 (219)
T ss_pred CEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcc
Confidence 99999999999655555 4555555554432 4699999999999987432111 11110 00 0001123
Q ss_pred eEEEeeccc--CCCChHHHHHHHHHHHHhchh
Q 028776 160 CMFEAVSGY--DGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 160 ~~~~~~Sa~--~~~~v~~l~~~i~~~i~~~~~ 189 (204)
..++++|++ .+.++.+++..+...+.+...
T Consensus 158 ~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 158 PALLETSAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred cceeEeecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 338999999 999999999999999865443
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=131.71 Aligned_cols=163 Identities=21% Similarity=0.366 Sum_probs=129.7
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccC---CCCCCCC---ccccccceeeeEEEEeC-cEEEEEEcCCCcchHHHHH
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSN---VEGLPPD---RIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWE 86 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~ 86 (204)
.....||+|.|+.++||||+++++...... ....... .-..|+.++++.+...+ ..+.++|||||+++..+|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 446789999999999999999999765421 1111111 11257778888877766 8999999999999999999
Q ss_pred HhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeec
Q 028776 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
-+.++++++|+++|.+.+..+ ....+..++.... .+|++|++||.|+....+.+++++.+.... ...++++.+
T Consensus 87 ~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~ 159 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEID 159 (187)
T ss_pred HHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeee
Confidence 999999999999999999887 2233334444421 299999999999999999999999998433 367899999
Q ss_pred ccCCCChHHHHHHHHHH
Q 028776 167 GYDGFGIKESVEWLVEV 183 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~ 183 (204)
|.++++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999999988876
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=137.76 Aligned_cols=135 Identities=22% Similarity=0.354 Sum_probs=107.3
Q ss_pred CCCccccccceeeeE--EE--EeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCC
Q 028776 48 PPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123 (204)
Q Consensus 48 ~~~~~~~~~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 123 (204)
+...+.+|++..+.. +. ...+.+.+|||+|++.+...+..+++++|++++|+|++++++|+.+..|+..+.....
T Consensus 5 F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~- 83 (176)
T PTZ00099 5 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG- 83 (176)
T ss_pred cCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-
Confidence 345566777766643 22 3457889999999999999999999999999999999999999999999988876543
Q ss_pred CCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHHHHhch
Q 028776 124 QGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 124 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~ 188 (204)
...|+++|+||+|+.+ ....++...... .....++++||++|.|++++|++|.+.+.+..
T Consensus 84 ~~~piilVgNK~DL~~~~~v~~~e~~~~~~-----~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 84 KDVIIALVGNKTDLGDLRKVTYEEGMQKAQ-----EYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 5689999999999964 345555544433 23456899999999999999999999986533
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=135.24 Aligned_cols=148 Identities=24% Similarity=0.255 Sum_probs=98.3
Q ss_pred EEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHH--------HHHHhcccC
Q 028776 21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYYEEA 92 (204)
Q Consensus 21 ~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~ 92 (204)
+++|.+|+|||||+++|.+....... .....+..........++..+.+|||||...... .....++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE---DTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec---CCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 58999999999999999753211101 1111222233444556678899999999876433 344567889
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
|++++|+|+.++.+.... ++...+.. ...|+++|+||+|+...... ...+.. ....+++++|+++|.|
T Consensus 78 d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~----~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 78 DVILFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYS----LGFGEPIPISAEHGRG 145 (157)
T ss_pred CEEEEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHh----cCCCCeEEEecccCCC
Confidence 999999999876544332 22233333 35899999999999764322 112211 1112578999999999
Q ss_pred hHHHHHHHHHH
Q 028776 173 IKESVEWLVEV 183 (204)
Q Consensus 173 v~~l~~~i~~~ 183 (204)
++++++++.+.
T Consensus 146 v~~l~~~l~~~ 156 (157)
T cd01894 146 IGDLLDAILEL 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999999864
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-22 Score=142.86 Aligned_cols=162 Identities=20% Similarity=0.330 Sum_probs=122.8
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee---EE-EEeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RI-EVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
..+|++++|+.++|||+|+-.++. +.+...+.+|.--++. .+ +...+.+.+|||.|++++.+.++..+.+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~------~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~ 76 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTT------NAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQ 76 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEecc------CcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCC
Confidence 468999999999999999988733 4555555554432222 13 2445678899999999999988888999
Q ss_pred CCEEEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCeEEEEEeCCCCCCcc--------------CHHHHHHHhCccccc
Q 028776 92 AHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKKLD 156 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~ 156 (204)
+|.+++||++.+++||+++. +|+..+..++ ++.|+|+|++|.||.+.. ..++.....+ .
T Consensus 77 tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~----~ 150 (198)
T KOG0393|consen 77 TDVFLLCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAK----E 150 (198)
T ss_pred CCEEEEEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHH----H
Confidence 99999999999999999854 6777776666 789999999999998422 1122222222 2
Q ss_pred cceeEEEeecccCCCChHHHHHHHHHHHHhchh
Q 028776 157 ERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 157 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
.....+++|||++..|++++|+...........
T Consensus 151 iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 151 IGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 233679999999999999999999988866554
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=139.28 Aligned_cols=158 Identities=28% Similarity=0.343 Sum_probs=110.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEE----EeCcEEEEEEcCCCcchHHHHHHhcccC-
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEA- 92 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~- 92 (204)
.+|+++|++|||||||+++|.... ....+.++ ........ .....+.+||+||+..+...+..+++.+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~------~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~ 73 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGK------YRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSA 73 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC------CCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccC
Confidence 479999999999999999996531 11222111 11122222 2357899999999999998888889998
Q ss_pred CEEEEEEeCCCC-CCHHHHHHHHHHHHhcCC--CCCCeEEEEEeCCCCCCccCHHHHHHHhCc----------c------
Q 028776 93 HAVVFVIDAACP-SRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPDAVSADELARYLDL----------K------ 153 (204)
Q Consensus 93 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----------~------ 153 (204)
+++|+|+|+.+. .++.....++..++.... ..++|+++++||+|+......+.+...+.. .
T Consensus 74 ~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~ 153 (203)
T cd04105 74 KGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLD 153 (203)
T ss_pred CEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999987 677777777766654321 257999999999999775444333333221 0
Q ss_pred -----------------cc--ccceeEEEeecccCCC-ChHHHHHHHHH
Q 028776 154 -----------------KL--DERVCMFEAVSGYDGF-GIKESVEWLVE 182 (204)
Q Consensus 154 -----------------~~--~~~~~~~~~~Sa~~~~-~v~~l~~~i~~ 182 (204)
.+ -...+.++++|++.+. |++.+.+||.+
T Consensus 154 ~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 154 GDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00 1256678899998876 69999998864
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-21 Score=151.72 Aligned_cols=157 Identities=23% Similarity=0.243 Sum_probs=103.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCc-EEEEEEcCCCcch--HHH------HHH
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPGL--RSI------WEK 87 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~g~~~~--~~~------~~~ 87 (204)
.++|+++|.+|+|||||+|+|++..... ......|.......+...+. .+.+|||+|.... ... ...
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v----~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~ 272 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYA----ADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQ 272 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceee----ccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHH
Confidence 3799999999999999999997632211 11222333333444555443 7899999996321 122 223
Q ss_pred hcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeE-EEeec
Q 028776 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM-FEAVS 166 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S 166 (204)
.+..+|++++|+|++++.++.....+.. ++......++|+++|+||+|+...... ... ... .+.+ ++.+|
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~-iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~-~~~------~~~~~~v~IS 343 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNT-VLEEIDAHEIPTLLVMNKIDMLDDFEP-RID-RDE------ENKPIRVWLS 343 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHH-HHHHhccCCCCEEEEEEcccCCCchhH-HHH-HHh------cCCCceEEEe
Confidence 3578999999999999987766543332 333222247899999999999653111 111 110 1122 57899
Q ss_pred ccCCCChHHHHHHHHHHHHh
Q 028776 167 GYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~i~~ 186 (204)
|++|.|+++++++|.+.+..
T Consensus 344 AktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 344 AQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999998853
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=156.42 Aligned_cols=161 Identities=18% Similarity=0.214 Sum_probs=110.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCC-CCCccc------cccceee----eEEEE-----eCcEEEEEEcCCCcc
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIV------PTVGLNI----GRIEV-----SNSKLVFWDLGGQPG 80 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~------~~~~~~~----~~~~~-----~~~~~~~~D~~g~~~ 80 (204)
.-+++++|+.++|||||+++|+......... ....+. ...++++ ..+.+ ....+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999997643211110 111111 1112221 12222 236789999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCH---HHHHHHhCcccccc
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---DELARYLDLKKLDE 157 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~ 157 (204)
+...+..+++.+|++++|+|++++.++.....|+... . .++|+|+|+||+|+...... +++.+.++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg-----~ 152 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIG-----L 152 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhC-----C
Confidence 9999999999999999999999877666555444322 2 36799999999998653221 23333322 1
Q ss_pred ceeEEEeecccCCCChHHHHHHHHHHHHhc
Q 028776 158 RVCMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 158 ~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
....++++||++|.|+++++++|.+.++..
T Consensus 153 ~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 153 DASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred CcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 223589999999999999999999888654
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=142.53 Aligned_cols=163 Identities=19% Similarity=0.240 Sum_probs=109.5
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc--------hHHHHHH
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEK 87 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~ 87 (204)
+.--|+++|.||+|||||+|++.+......+.-.++ |-.-..+....++.++.++||||... ..+....
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QT---TR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQT---TRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcch---hhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 345689999999999999999976433222211111 11122233556688999999999322 2233445
Q ss_pred hcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC-HHHHHHHhCccccccceeEEEeec
Q 028776 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
.+..+|+++||+|++++.. ....++...+.. .+.|+|+++||+|...... .....+.+.... ....++++|
T Consensus 82 sl~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~---~f~~ivpiS 153 (298)
T COG1159 82 ALKDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL---PFKEIVPIS 153 (298)
T ss_pred HhccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhC---CcceEEEee
Confidence 5788999999999998532 222333233322 3689999999999987555 344444444222 233799999
Q ss_pred ccCCCChHHHHHHHHHHHHhchh
Q 028776 167 GYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
|++|.|++.|.+.+.+.+++...
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999876544
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=149.25 Aligned_cols=165 Identities=25% Similarity=0.314 Sum_probs=111.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeC-cEEEEEEcCCCcc-------hHHHHHHhc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYY 89 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~ 89 (204)
-.|+++|.+|||||||+++|++...... .....|.....+.+...+ ..+.++||||... ....+...+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs----~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i 235 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVA----DYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL 235 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCccccc----CCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH
Confidence 3799999999999999999976443222 222234444555566654 4699999999542 223344457
Q ss_pred ccCCEEEEEEeCC---CCCCHHHHHHHHHHHHhcC-CCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEee
Q 028776 90 EEAHAVVFVIDAA---CPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165 (204)
Q Consensus 90 ~~~d~ii~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (204)
+.+|++++|+|++ +.+.+.....+...+..+. ...++|+|+|+||+|+.......+....+... . ....+++++
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~-~~~~~Vi~I 313 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-L-GWEGPVYLI 313 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-h-CCCCCEEEE
Confidence 8899999999998 4455666666666665432 12468999999999997543322222222111 0 112358999
Q ss_pred cccCCCChHHHHHHHHHHHHhch
Q 028776 166 SGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 166 Sa~~~~~v~~l~~~i~~~i~~~~ 188 (204)
||+++.|++++++.|.+.+.+..
T Consensus 314 SA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 314 SAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred ECCCCcCHHHHHHHHHHHhhhCc
Confidence 99999999999999999987643
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=152.09 Aligned_cols=164 Identities=23% Similarity=0.201 Sum_probs=111.0
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchH-----------HH
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-----------SI 84 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~ 84 (204)
..++|+++|.+|+|||||++++++....... .....+.......+...+..+.+|||||..... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~---~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS---DIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeec---CCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 5699999999999999999999753221111 111122222223345667789999999953321 11
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEe
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (204)
....++.+|++++|+|+.++.+.... ..+..+.. .++|+|+|+||+|+.+....+++...+..........++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEE
Confidence 23456789999999999988665443 23333322 36899999999999754334445444443333345678999
Q ss_pred ecccCCCChHHHHHHHHHHHHhc
Q 028776 165 VSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 165 ~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
+||++|.|++++++.+.+.....
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998877544
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=137.59 Aligned_cols=164 Identities=20% Similarity=0.184 Sum_probs=102.6
Q ss_pred hcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCC----------cch
Q 028776 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGL 81 (204)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~ 81 (204)
++....++|+++|++|+|||||++++++.... .........+....+.. .+.++.+|||||. +.+
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~--~~~~~~~~~t~~~~~~~---~~~~l~l~DtpG~~~~~~~~~~~~~~ 93 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNL--ARTSKTPGRTQLINFFE---VNDKLRLVDLPGYGYAKVSKEEKEKW 93 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc--ccccCCCCceeEEEEEe---cCCeEEEeCCCCCCCcCCCchHHHHH
Confidence 35667899999999999999999999763200 01111111222222222 1468999999994 233
Q ss_pred HHHHHHhccc---CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccc
Q 028776 82 RSIWEKYYEE---AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 158 (204)
Q Consensus 82 ~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 158 (204)
......+++. ++++++|+|++++.+... .++...+.. .++|+++++||+|+.+....+.....+.... ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-~~~ 167 (196)
T PRK00454 94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL-KFG 167 (196)
T ss_pred HHHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-Hhc
Confidence 3334444443 478889999887644332 222233332 3689999999999976433333222221111 112
Q ss_pred eeEEEeecccCCCChHHHHHHHHHHHHh
Q 028776 159 VCMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 159 ~~~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
..+++++||+++.|++++++.|.+.+.+
T Consensus 168 ~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 168 DDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4678999999999999999999887754
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=131.75 Aligned_cols=116 Identities=26% Similarity=0.482 Sum_probs=81.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 98 (204)
||+|+|+.|||||||+++|.+...............+..........+...+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999997654331111112222333333333434455689999999988887766668999999999
Q ss_pred EeCCCCCCHHHHHH---HHHHHHhcCCCCCCeEEEEEeCCC
Q 028776 99 IDAACPSRFEDSKT---ALEKVLRNEDLQGAPLLILANKQD 136 (204)
Q Consensus 99 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~~p~ivv~nK~D 136 (204)
||+++++++..+.. |+..+.... .+.|+|+|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~--~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD--KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS--SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC--CCCCEEEEEeccC
Confidence 99999999988644 455554432 4699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=157.07 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=107.1
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCC--------------CC-----------CC--CccccccceeeeEEEEe
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL-----------PP--DRIVPTVGLNIGRIEVS 66 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------~~-----------~~--~~~~~~~~~~~~~~~~~ 66 (204)
.++.++|+++|+.++|||||+++|+....... +. .. ..-..++......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 56789999999999999999999964322111 00 00 01123444445556667
Q ss_pred CcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHH--HHHhcCCCCCCeEEEEEeCCCCCCc--cC
Q 028776 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALE--KVLRNEDLQGAPLLILANKQDLPDA--VS 142 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~--~~~~~~~~~~~p~ivv~nK~Dl~~~--~~ 142 (204)
...+.+|||||++.+...+...+..+|++++|+|+++++++.. .++.. .+.... ...|+|+|+||+|+.+. ..
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTL--GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHc--CCCeEEEEEEChhccCccHHH
Confidence 8899999999999888777777889999999999998754321 12211 222222 23689999999999742 11
Q ss_pred ----HHHHHHHhCccccccceeEEEeecccCCCChHHH
Q 028776 143 ----ADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 176 (204)
Q Consensus 143 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 176 (204)
.+++..++..........+++++||++|.|++++
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 2333444432333334578999999999999863
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=153.95 Aligned_cols=158 Identities=22% Similarity=0.272 Sum_probs=107.7
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCc-EEEEEEcCCCcchHHHHHHhcccCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
.+.++|+++|++++|||||++++++..... . .....|.......+...+. .+.+|||||++.+..++...+..+|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~--~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aD 160 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ--G--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTD 160 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc--c--cCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCC
Confidence 366899999999999999999996532111 1 1111223333334445444 8999999999999999888899999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccc----cceeEEEeecccC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD----ERVCMFEAVSGYD 169 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~ 169 (204)
++++|+|+++... .+....+... . ..++|+|+++||+|+... ..+++...+...... ....+++++||++
T Consensus 161 iaILVVda~dgv~-~qT~e~i~~~-~---~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt 234 (587)
T TIGR00487 161 IVVLVVAADDGVM-PQTIEAISHA-K---AANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALT 234 (587)
T ss_pred EEEEEEECCCCCC-HhHHHHHHHH-H---HcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence 9999999987532 2222222222 1 146899999999999652 334444443321110 1235799999999
Q ss_pred CCChHHHHHHHHH
Q 028776 170 GFGIKESVEWLVE 182 (204)
Q Consensus 170 ~~~v~~l~~~i~~ 182 (204)
|.|+++++++|..
T Consensus 235 GeGI~eLl~~I~~ 247 (587)
T TIGR00487 235 GDGIDELLDMILL 247 (587)
T ss_pred CCChHHHHHhhhh
Confidence 9999999999864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=132.26 Aligned_cols=157 Identities=21% Similarity=0.225 Sum_probs=100.6
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchH--------HHHHH
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--------SIWEK 87 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~ 87 (204)
...+|+++|++|+|||||++++++......... ...+..............+.+|||||..... .....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 78 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPK---PQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS 78 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCC---CCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence 357899999999999999999976422111111 0111111112233345789999999964432 23344
Q ss_pred hcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC-ccCHHHHHHHhCccccccceeEEEeec
Q 028776 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
.+..+|++++|+|+.++. .....++...+.. .+.|+++|+||+|+.. .....+....+. ......+++++|
T Consensus 79 ~~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~s 150 (168)
T cd04163 79 ALKDVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLK---ELGPFAEIFPIS 150 (168)
T ss_pred HHHhCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHH---hccCCCceEEEE
Confidence 578899999999999872 2222333333322 2589999999999973 333333333332 112245789999
Q ss_pred ccCCCChHHHHHHHHHH
Q 028776 167 GYDGFGIKESVEWLVEV 183 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~ 183 (204)
++++.|++++++.|.+.
T Consensus 151 ~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 151 ALKGENVDELLEEIVKY 167 (168)
T ss_pred eccCCChHHHHHHHHhh
Confidence 99999999999999764
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=158.12 Aligned_cols=164 Identities=21% Similarity=0.219 Sum_probs=111.1
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc----------hHHH-
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG----------LRSI- 84 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~- 84 (204)
..++|+++|.+|||||||++++++..... .......|.......+.+++..+.+|||||... +...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~---v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAV---VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc---cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHH
Confidence 45899999999999999999997643110 011111222222234556777899999999532 1111
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEe
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (204)
....++.+|++++|+|++++.++.... ++..+.. .++|+|+|+||+|+.+....+.+...+..........++++
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEE
Confidence 123468899999999999987776543 3333332 36899999999999764433444443332222234567899
Q ss_pred ecccCCCChHHHHHHHHHHHHhc
Q 028776 165 VSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 165 ~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
+||++|.|++++++.+.+.+.+.
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988763
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=156.61 Aligned_cols=161 Identities=22% Similarity=0.216 Sum_probs=111.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcc--ccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 95 (204)
+.|+++|+.++|||||+++|++...+ ...++. ..|+...+..+..++..+.+||+||++.+...+...+.++|++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d---~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~a 77 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAAD---RLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAA 77 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCc---CChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence 47999999999999999999763311 111111 2344444445666678899999999999998888889999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCe-EEEEEeCCCCCCccCHH----HHHHHhCccccccceeEEEeecccCC
Q 028776 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVSAD----ELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
++|+|++++.. .+..+.+. ++.. .++| +|+|+||+|+.+....+ ++...+..... ....+++++||++|
T Consensus 78 ILVVDa~~G~~-~qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG 151 (581)
T TIGR00475 78 LLVVDADEGVM-TQTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTG 151 (581)
T ss_pred EEEEECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCC
Confidence 99999987421 22222222 2222 2566 99999999997643322 23333321111 12578999999999
Q ss_pred CChHHHHHHHHHHHHhc
Q 028776 171 FGIKESVEWLVEVMERS 187 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~~~ 187 (204)
.|++++++.+.+.+...
T Consensus 152 ~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 152 QGIGELKKELKNLLESL 168 (581)
T ss_pred CCchhHHHHHHHHHHhC
Confidence 99999999998777543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=152.29 Aligned_cols=162 Identities=18% Similarity=0.189 Sum_probs=106.7
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCC--------------CCC-------------CCccccccceeeeEEEEe
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLP-------------PDRIVPTVGLNIGRIEVS 66 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------~~~-------------~~~~~~~~~~~~~~~~~~ 66 (204)
.+++++|+++|++++|||||+++|+....... +.. ...-..|.......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 46789999999999999999999964332211 100 001234555555566677
Q ss_pred CcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCcc--C--
Q 028776 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--S-- 142 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~-- 142 (204)
+..+.+|||||++++...+...+..+|++++|+|++++..+.....+...+.... ...|+++++||+|+.... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8899999999999887766667789999999999987322222222222222222 235799999999997521 1
Q ss_pred --HHHHHHHhCccccccceeEEEeecccCCCChHHHH
Q 028776 143 --ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 177 (204)
Q Consensus 143 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 177 (204)
.+++...+..........+++++||++|.|++++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 13344444322222234689999999999998743
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=135.80 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=100.9
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCC----------CCCC--ccccccceeeeEEEEeCcEEEEEEcCCCcchHH
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------LPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 83 (204)
++++|+++|+.++|||||+++|+........ .... .-..++......+..++.++.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 3689999999999999999999754221100 0011 111223333333445667899999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCe-EEEEEeCCCCCCccC-H----HHHHHHhCcccccc
Q 028776 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-A----DELARYLDLKKLDE 157 (204)
Q Consensus 84 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~ 157 (204)
.....+..+|++++|+|+..+-. ......+..+. . .++| +|+++||+|+..... . +++...+.....+.
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~-~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLAR-Q---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHH-H---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 88888899999999999986532 22333333332 2 2455 789999999964221 2 23444443333334
Q ss_pred ceeEEEeecccCCCChH
Q 028776 158 RVCMFEAVSGYDGFGIK 174 (204)
Q Consensus 158 ~~~~~~~~Sa~~~~~v~ 174 (204)
...+++++||.+|.|+.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 56899999999999853
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=156.95 Aligned_cols=159 Identities=24% Similarity=0.293 Sum_probs=109.4
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
..+.+.|+++|+.++|||||+++|+..... .+ ..-..|.....+.+.+.+..+.+|||||++.|..++...+..+|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~---e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aD 362 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AG---EAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTD 362 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-cc---ccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCC
Confidence 357799999999999999999999642211 11 11112333333445666788999999999999999988899999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccc----ccceeEEEeecccC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL----DERVCMFEAVSGYD 169 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 169 (204)
++++|+|+++... .+....+.... ..++|+|+++||+|+... +.+.+...+..... ....++++++||++
T Consensus 363 iaILVVdAddGv~-~qT~e~i~~a~----~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 363 IVVLVVAADDGVM-PQTIEAINHAK----AAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred EEEEEEECCCCCC-HhHHHHHHHHH----hcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 9999999987532 12222222221 146899999999999653 23333332221111 01247899999999
Q ss_pred CCChHHHHHHHHH
Q 028776 170 GFGIKESVEWLVE 182 (204)
Q Consensus 170 ~~~v~~l~~~i~~ 182 (204)
|.|+++++++|..
T Consensus 437 G~GI~eLle~I~~ 449 (787)
T PRK05306 437 GEGIDELLEAILL 449 (787)
T ss_pred CCCchHHHHhhhh
Confidence 9999999999875
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=135.36 Aligned_cols=152 Identities=21% Similarity=0.252 Sum_probs=95.5
Q ss_pred hhhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCc----------
Q 028776 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP---------- 79 (204)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------- 79 (204)
..++..+.++|+++|++|+|||||++++++.... .........|....++.. + ..+.+|||||..
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~--~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~ 85 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKL--ARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKE 85 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc--ccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHH
Confidence 4456678999999999999999999999763210 111112223333333332 2 378999999942
Q ss_pred chHHHHHHhcc---cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC----HHHHHHHhCc
Q 028776 80 GLRSIWEKYYE---EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDL 152 (204)
Q Consensus 80 ~~~~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~ 152 (204)
.+......+++ .+|++++|+|++++-+.... ..+ ..+.. .+.|+++++||+|+..... .+++.+.+..
T Consensus 86 ~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~-~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~ 160 (179)
T TIGR03598 86 KWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EML-EWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK 160 (179)
T ss_pred HHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHH-HHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence 23333334444 46899999999876444333 222 23332 3689999999999975332 2333344331
Q ss_pred cccccceeEEEeecccCCCChH
Q 028776 153 KKLDERVCMFEAVSGYDGFGIK 174 (204)
Q Consensus 153 ~~~~~~~~~~~~~Sa~~~~~v~ 174 (204)
. ....+++++||++|+|++
T Consensus 161 ~---~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 161 D---ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred c---cCCCceEEEECCCCCCCC
Confidence 1 123479999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-20 Score=149.94 Aligned_cols=152 Identities=25% Similarity=0.338 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc--------hHHHHHHhc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEKYY 89 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 89 (204)
++|+++|.+|||||||+++|.+.... ........+....+......+..+.+|||||... +.......+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~---~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA---IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce---eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 68999999999999999999753321 0111112233334445667778999999999876 233445567
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccC
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
..+|++++|+|+.++.+... .++..++.. .+.|+++|+||+|+.+. .....+... .....++++||++
T Consensus 79 ~~ad~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~-----lg~~~~~~iSa~~ 146 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYS-----LGLGEPYPISAEH 146 (435)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHh-----cCCCCCEEEEeeC
Confidence 88999999999987644322 222233333 26899999999997541 222233322 1112378999999
Q ss_pred CCChHHHHHHHHHHH
Q 028776 170 GFGIKESVEWLVEVM 184 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i 184 (204)
|.|++++++.+.+..
T Consensus 147 g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 147 GRGIGDLLDAILEEL 161 (435)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998743
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=150.30 Aligned_cols=170 Identities=20% Similarity=0.203 Sum_probs=109.6
Q ss_pred hhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE----------------EE--E-------
Q 028776 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----------------IE--V------- 65 (204)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~------- 65 (204)
|.+.+++++|+++|+.++|||||+.+|++...+........ ..|+...+.. .. .
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~r-g~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKR-GITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET 81 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhc-CcEEEecccccccccccccCcccccccccccccccccc
Confidence 55778899999999999999999999965432211111100 1122211100 00 0
Q ss_pred -eCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCH-
Q 028776 66 -SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA- 143 (204)
Q Consensus 66 -~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~- 143 (204)
....+.+|||||++++..........+|++++|+|+.++.........+..+ ... ...|+++|+||+|+.+....
T Consensus 82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHH
Confidence 0257899999999988877777777899999999999753112222222222 221 23479999999999764322
Q ss_pred ---HHHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHHHHh
Q 028776 144 ---DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 144 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
+++...+... .....+++++||++|.|++++++.|.+.+..
T Consensus 159 ~~~~~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 159 ENYEQIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 2333333211 1235789999999999999999999987654
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=142.77 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=102.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchH--------HHHHHh
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--------SIWEKY 88 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~ 88 (204)
.-.|+++|.+|||||||+++|++........... .+..........++.++.++||||..... ......
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~---tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ---TTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCC---cccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 4569999999999999999997643211111111 11111111122345789999999964432 233345
Q ss_pred cccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC-ccCHHHHHHHhCccccccceeEEEeecc
Q 028776 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 89 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
+..+|++++|+|++++. .....++...+.. .+.|+++|+||+|+.. .....+....+.. .....+++++||
T Consensus 82 ~~~~D~il~vvd~~~~~--~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA 153 (292)
T PRK00089 82 LKDVDLVLFVVDADEKI--GPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISA 153 (292)
T ss_pred HhcCCEEEEEEeCCCCC--ChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecC
Confidence 67899999999998842 2223333333332 3689999999999973 2222333333321 112457899999
Q ss_pred cCCCChHHHHHHHHHHHHhc
Q 028776 168 YDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 168 ~~~~~v~~l~~~i~~~i~~~ 187 (204)
+++.|++++++++.+.+.+.
T Consensus 154 ~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred CCCCCHHHHHHHHHHhCCCC
Confidence 99999999999999988543
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=130.25 Aligned_cols=154 Identities=28% Similarity=0.252 Sum_probs=103.4
Q ss_pred EEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe-CcEEEEEEcCCCcchH-------HHHHHhcccCC
Q 028776 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLR-------SIWEKYYEEAH 93 (204)
Q Consensus 22 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~-------~~~~~~~~~~d 93 (204)
++|++|+|||||++++.+......... ...+........... ...+.+||+||..... ......+..+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPV---PGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCC---CCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence 589999999999999976432211111 111212222223333 6789999999965543 34455778899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCCh
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 173 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 173 (204)
++++|+|+.++.+..... +...... ...|+++|+||+|+.......+...............+++++|++++.|+
T Consensus 78 ~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 152 (163)
T cd00880 78 LILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGI 152 (163)
T ss_pred EEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCH
Confidence 999999999887665544 2222222 47899999999999875554444321222223356778999999999999
Q ss_pred HHHHHHHHHH
Q 028776 174 KESVEWLVEV 183 (204)
Q Consensus 174 ~~l~~~i~~~ 183 (204)
++++.++.+.
T Consensus 153 ~~l~~~l~~~ 162 (163)
T cd00880 153 DELREALIEA 162 (163)
T ss_pred HHHHHHHHhh
Confidence 9999998864
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=145.37 Aligned_cols=149 Identities=25% Similarity=0.353 Sum_probs=108.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHhh----ccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc-----hH----HH
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSV----YSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-----LR----SI 84 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----~~----~~ 84 (204)
+.|+++|.||||||||+|+|++. +.+.++.++++. ++...+.+..+.++||+|.+. +. .+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~-------y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Q 76 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRI-------YGDAEWLGREFILIDTGGLDDGDEDELQELIREQ 76 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCc-------cceeEEcCceEEEEECCCCCcCCchHHHHHHHHH
Confidence 78999999999999999999643 334444444444 445678888899999999542 22 23
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEe
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (204)
....+..+|+++||+|....-+ ...+.+..++.. .++|+|+|+||+|-. .......++++ ...-.+++
T Consensus 77 a~~Ai~eADvilfvVD~~~Git--~~D~~ia~~Lr~---~~kpviLvvNK~D~~--~~e~~~~efys-----lG~g~~~~ 144 (444)
T COG1160 77 ALIAIEEADVILFVVDGREGIT--PADEEIAKILRR---SKKPVILVVNKIDNL--KAEELAYEFYS-----LGFGEPVP 144 (444)
T ss_pred HHHHHHhCCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEEcccCc--hhhhhHHHHHh-----cCCCCceE
Confidence 4445678999999999987543 233344444443 579999999999976 22344455554 33345788
Q ss_pred ecccCCCChHHHHHHHHHHHH
Q 028776 165 VSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 165 ~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
+||-+|.|+.+|++.+.+.+.
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eehhhccCHHHHHHHHHhhcC
Confidence 999999999999999999974
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=150.36 Aligned_cols=162 Identities=19% Similarity=0.200 Sum_probs=109.9
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCC-CCCcc----------ccccceeeeEEEE-----eCcEEEEEEcCCCc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRI----------VPTVGLNIGRIEV-----SNSKLVFWDLGGQP 79 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~-----~~~~~~~~D~~g~~ 79 (204)
+.-+++++|+.++|||||+.+|+......... ....+ ..++......+.+ ....+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45689999999999999999996543221110 00111 1122221222322 25789999999999
Q ss_pred chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCH---HHHHHHhCccccc
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---DELARYLDLKKLD 156 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 156 (204)
++...+...++.+|++++|+|++++........|.. ... .+.|+|+|+||+|+...... +++.+.++
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg----- 155 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIG----- 155 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhC-----
Confidence 999999999999999999999998755444333322 221 36899999999998653221 22322222
Q ss_pred cceeEEEeecccCCCChHHHHHHHHHHHHhc
Q 028776 157 ERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 157 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
.....++++||++|.|+++++++|.+.++..
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 1223589999999999999999999988654
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=135.15 Aligned_cols=152 Identities=26% Similarity=0.266 Sum_probs=101.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch-------HHHHHHhccc
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIWEKYYEE 91 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~ 91 (204)
+|+++|.+|+|||||+++|++....... ....|.....+.+.+.+..+.+||+||.... .......+++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~----~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA----YEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC----CCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence 6899999999999999999875422211 1123333444556678889999999996432 2345567899
Q ss_pred CCEEEEEEeCCCCCC-HHHHHHHHH----------------------------------------HHHhcC---------
Q 028776 92 AHAVVFVIDAACPSR-FEDSKTALE----------------------------------------KVLRNE--------- 121 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~--------- 121 (204)
+|++++|+|+++++. ...+...+. .++...
T Consensus 78 ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 78 ADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 999999999987542 111111111 111100
Q ss_pred ---------------CCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHHH
Q 028776 122 ---------------DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 122 ---------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
....+|+++|+||+|+.. .++...... ..+++++||+++.|++++++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---~~~~~~~~~-------~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---IEELDLLAR-------QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCC---HHHHHHHhc-------CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 013469999999999854 333333221 13488999999999999999999866
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-20 Score=152.99 Aligned_cols=161 Identities=21% Similarity=0.250 Sum_probs=108.6
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE----eCcEEEEEEcCCCcchHHHHHHhc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
..+.++|+++|+.++|||||+++|+...... ...-..+.....+.+.. ....+.+|||||++.+..++...+
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~----~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~ 316 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ----KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGA 316 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc----ccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHH
Confidence 3466899999999999999999996532211 11111122222222222 347899999999999999999999
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccc----ccceeEEEee
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL----DERVCMFEAV 165 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 165 (204)
..+|++++|+|+++..... ....+..+ .. .++|+|+++||+|+... ..+++...+..... .....+++++
T Consensus 317 ~~aDiaILVVDA~dGv~~Q-T~E~I~~~-k~---~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~V 390 (742)
T CHL00189 317 NVTDIAILIIAADDGVKPQ-TIEAINYI-QA---ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPI 390 (742)
T ss_pred HHCCEEEEEEECcCCCChh-hHHHHHHH-Hh---cCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEE
Confidence 9999999999998753221 11222222 21 46899999999999653 23344333321110 0124689999
Q ss_pred cccCCCChHHHHHHHHHHH
Q 028776 166 SGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 166 Sa~~~~~v~~l~~~i~~~i 184 (204)
||++|.|++++++.|....
T Consensus 391 SAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 391 SASQGTNIDKLLETILLLA 409 (742)
T ss_pred ECCCCCCHHHHHHhhhhhh
Confidence 9999999999999988754
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-20 Score=148.78 Aligned_cols=153 Identities=26% Similarity=0.336 Sum_probs=104.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCC--------cchHHHHHHhcc
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PGLRSIWEKYYE 90 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~ 90 (204)
+|+++|.+|||||||+++|++.... ........+...........+..+.+|||||. ..+.......++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~---~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDA---IVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcc---eecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 5899999999999999999753211 01111122223334456677888999999995 334455666778
Q ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
.+|++++|+|+.++.+... ..+..++.. .++|+++|+||+|+..... ...+... ....+++++||++|
T Consensus 78 ~ad~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~--~~~~~~~-----lg~~~~~~vSa~~g 145 (429)
T TIGR03594 78 EADVILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDA--VAAEFYS-----LGFGEPIPISAEHG 145 (429)
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCcccc--cHHHHHh-----cCCCCeEEEeCCcC
Confidence 9999999999987644332 223333333 3689999999999875322 1122221 12235899999999
Q ss_pred CChHHHHHHHHHHHHh
Q 028776 171 FGIKESVEWLVEVMER 186 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~~ 186 (204)
.|++++++.+.+.+.+
T Consensus 146 ~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 146 RGIGDLLDAILELLPE 161 (429)
T ss_pred CChHHHHHHHHHhcCc
Confidence 9999999999988854
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=148.66 Aligned_cols=165 Identities=19% Similarity=0.191 Sum_probs=107.2
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-------------------EE-EE------eCc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-------------------RI-EV------SNS 68 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~-~~------~~~ 68 (204)
.+.++|+++|+.++|||||+++|++...+......+. ..|+...+. .. .. ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~r-g~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKR-GISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHc-CceeEecccccccccccccCcccccccccccccccccccccc
Confidence 4679999999999999999999965432211111100 011111100 00 00 135
Q ss_pred EEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC----HH
Q 028776 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----AD 144 (204)
Q Consensus 69 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~ 144 (204)
.+.+|||||++++...+......+|++++|+|++++....+..+.+..+ ... ...|+++++||+|+.+... .+
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~ 157 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYE 157 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHH
Confidence 7899999999999888888888999999999999753112223333322 221 2357999999999976322 23
Q ss_pred HHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHHHH
Q 028776 145 ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
++...+... .....+++++||++|.|+++++++|...+.
T Consensus 158 ~i~~~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 158 EIKEFVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHhhhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 333333211 123578999999999999999999998764
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=133.44 Aligned_cols=162 Identities=22% Similarity=0.233 Sum_probs=112.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCC-------CCCC-C------ccccccceeeeEEEEeCcEEEEEEcCCCcchHHH
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVE-------GLPP-D------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~-------~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 84 (204)
+|+++|+.|+|||||+++|+....... +... + .-..++......+.+.+.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999965322111 0000 0 0112333344456778889999999999999988
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc---cCHHHHHHHhCc---------
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---VSADELARYLDL--------- 152 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~--------- 152 (204)
+...++.+|++++|+|+.+.... ....++..... .++|+++++||+|+... ...++++..++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 89999999999999999986442 34445544432 36899999999999742 222333333321
Q ss_pred -----------------------------------------------cccccceeEEEeecccCCCChHHHHHHHHHHHH
Q 028776 153 -----------------------------------------------KKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 153 -----------------------------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
.......+|++..||.++.|++.|++.|.+.++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 000245678889999999999999999988764
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-20 Score=134.76 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=96.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCC------------CCC---------------CccccccceeeeEEEEeCcEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG------------LPP---------------DRIVPTVGLNIGRIEVSNSKLV 71 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~------------~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 71 (204)
+|+++|++|+|||||+++|+........ ... ..-..|.......+...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999643322110 000 0012233333444566788999
Q ss_pred EEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC--HHHHHHH
Q 028776 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--ADELARY 149 (204)
Q Consensus 72 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~ 149 (204)
+|||||+..+...+...++.+|++++|+|+.++.. ......+ .++... ...++|+|+||+|+..... .+++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887777777899999999999987632 1222222 222221 1246788999999965211 1222222
Q ss_pred hCcc--ccccceeEEEeecccCCCChHHH
Q 028776 150 LDLK--KLDERVCMFEAVSGYDGFGIKES 176 (204)
Q Consensus 150 ~~~~--~~~~~~~~~~~~Sa~~~~~v~~l 176 (204)
+... .......+++++||++|.|+++.
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 2211 11122357999999999999854
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=141.78 Aligned_cols=166 Identities=21% Similarity=0.219 Sum_probs=119.8
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCc----------chH-HH
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----------GLR-SI 84 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~-~~ 84 (204)
..++|+++|.||+|||||+|++++.....-.. .-..|.......+++++.++.++||+|.. .+. ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~---~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD---IAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC---CCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehh
Confidence 35999999999999999999996543221111 11223333334467789999999999932 221 12
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHHHHHHhCccccccceeEE
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMF 162 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~ 162 (204)
....+..+|.+++|+|+.++- .+....+..++.. .+.++|+|+||.|+.+. ...++....+.....+....++
T Consensus 254 t~~aI~~a~vvllviDa~~~~--~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i 328 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGI--SEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPI 328 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCc--hHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeE
Confidence 334567799999999999884 3433444444444 57999999999999875 5566666666665556788899
Q ss_pred EeecccCCCChHHHHHHHHHHHHhchh
Q 028776 163 EAVSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 163 ~~~Sa~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
+.+||++|.+++++++.+.........
T Consensus 329 ~~iSA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 329 VFISALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHhcc
Confidence 999999999999999999988865554
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=149.82 Aligned_cols=164 Identities=19% Similarity=0.213 Sum_probs=116.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCC--CC----------CccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHH
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGL--PP----------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE 86 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 86 (204)
+|+++|+.++|||||+++|+......... .. ..-..++......+.+.+.++.+|||||+.++...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 79999999999999999996532211110 00 0112233333445777889999999999999999999
Q ss_pred HhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC---HHHHHHHhCcccc--ccceeE
Q 028776 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKL--DERVCM 161 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~ 161 (204)
..++.+|++++|+|+.+.. ..+...++..... .++|+|+|+||+|+..... .+++.+.+..... ....+|
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 9999999999999998642 4555566665544 3689999999999865321 2334444321111 123568
Q ss_pred EEeecccCCC----------ChHHHHHHHHHHHHhc
Q 028776 162 FEAVSGYDGF----------GIKESVEWLVEVMERS 187 (204)
Q Consensus 162 ~~~~Sa~~~~----------~v~~l~~~i~~~i~~~ 187 (204)
++++||++|. |++.+++.|.+.++..
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 9999999995 7999999999988654
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-20 Score=135.06 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=98.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCC--------------C-----------CCC--CccccccceeeeEEEEeCcEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVE--------------G-----------LPP--DRIVPTVGLNIGRIEVSNSKLV 71 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~--------------~-----------~~~--~~~~~~~~~~~~~~~~~~~~~~ 71 (204)
+|+++|+.++|||||+.+|+....... + ... ..-..+.......+...+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999953221100 0 000 0112233444455667888999
Q ss_pred EEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCC---H---HHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc----c
Q 028776 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR---F---EDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----V 141 (204)
Q Consensus 72 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~ 141 (204)
+|||||+..+...+...+..+|++++|+|+.++.. | ......+.. .... ...|+|+++||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALL-ARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHH-HHHc--CCCeEEEEEEccccccccccHH
Confidence 99999998887777777888999999999987521 1 122222222 2221 23689999999999732 2
Q ss_pred CHHHHHHHh----CccccccceeEEEeecccCCCChH
Q 028776 142 SADELARYL----DLKKLDERVCMFEAVSGYDGFGIK 174 (204)
Q Consensus 142 ~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~ 174 (204)
..+++...+ ..........+++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 233333332 222222345789999999999987
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=152.78 Aligned_cols=157 Identities=22% Similarity=0.248 Sum_probs=104.1
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc--------hHHHHH
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWE 86 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~ 86 (204)
...++|+++|.+|||||||+++|++.... ........|...........+..+.+|||||... +.....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~---iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREA---VVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCce---eecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 34578999999999999999999753211 0111111222233334555678899999999653 334555
Q ss_pred HhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeec
Q 028776 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
..++.+|++++|+|+.+.- ......+...+.. .++|+|+|+||+|+.... ......+.. .. ...+++|
T Consensus 350 ~~~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l-g~----~~~~~iS 417 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL-GL----GEPYPIS 417 (712)
T ss_pred HHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc-CC----CCeEEEE
Confidence 6678999999999998642 2233333333333 478999999999986532 122222221 11 1246899
Q ss_pred ccCCCChHHHHHHHHHHHHh
Q 028776 167 GYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~i~~ 186 (204)
|++|.|+++++++|.+.+..
T Consensus 418 A~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCCCchHHHHHHHHhccc
Confidence 99999999999999998855
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=147.01 Aligned_cols=163 Identities=21% Similarity=0.253 Sum_probs=103.4
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEE----------------EeCcEEEEEEcCCCc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQP 79 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~ 79 (204)
+.+-|+++|++++|||||+++|++..... .....+.++++..+...+ .....+.+|||||++
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~--~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK--REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccc--ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 45679999999999999999997542211 111112222332222111 111248899999999
Q ss_pred chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCcc--------------CHHH
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADE 145 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~ 145 (204)
.+..++...++.+|++++|+|+++...... ...+. ++.. .+.|+++++||+|+.... ..+.
T Consensus 81 ~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt-~e~i~-~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 81 AFTNLRKRGGALADLAILIVDINEGFKPQT-QEALN-ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred hHHHHHHHHHhhCCEEEEEEECCcCCCHhH-HHHHH-HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 999998889999999999999987422111 11122 2222 368999999999996411 0011
Q ss_pred HHH-----------HhCcccc----------ccceeEEEeecccCCCChHHHHHHHHHHHH
Q 028776 146 LAR-----------YLDLKKL----------DERVCMFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 146 ~~~-----------~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
+.. .+....+ .....+++++||++|+|+++|+++|.....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 110 1111111 123578999999999999999998876543
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-19 Score=146.66 Aligned_cols=168 Identities=17% Similarity=0.172 Sum_probs=115.5
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCC--C----------CCccccccceeeeEEEEeCcEEEEEEcCCCcchH
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL--P----------PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 82 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 82 (204)
.+..+|+++|+.++|||||+++|+......... . ......++......+.+++..+.+|||||+.++.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 345789999999999999999997532211110 0 0011122222333456778899999999999999
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC---HHHHHHHhCcccc--cc
Q 028776 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKL--DE 157 (204)
Q Consensus 83 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~ 157 (204)
..+..+++.+|++++|+|+.+... .+...++..... .++|.|+++||+|+..... .+++...+..... ..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 999999999999999999987532 233444444433 3689999999999875332 3344444321111 12
Q ss_pred ceeEEEeecccCCC----------ChHHHHHHHHHHHHhc
Q 028776 158 RVCMFEAVSGYDGF----------GIKESVEWLVEVMERS 187 (204)
Q Consensus 158 ~~~~~~~~Sa~~~~----------~v~~l~~~i~~~i~~~ 187 (204)
..+|++++||++|. ++..|++.|.+.++..
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 45789999999998 5889999998888654
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-19 Score=124.31 Aligned_cols=164 Identities=20% Similarity=0.246 Sum_probs=111.8
Q ss_pred hhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCC----------Ccc
Q 028776 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPG 80 (204)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~ 80 (204)
.......+-|+++|..|+|||||||+|++.... .....+...|..+++..+.. .+.++|.|| .+.
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L--ArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNL--ARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcce--eecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHH
Confidence 335567789999999999999999999874321 23344445566666654433 288999999 345
Q ss_pred hHHHHHHhcc---cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCH----HHHHHHhCcc
Q 028776 81 LRSIWEKYYE---EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLK 153 (204)
Q Consensus 81 ~~~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~ 153 (204)
+...+..+++ +..++++++|+..+-.- ....+.+++.. .++|+++++||+|.+..... ..+...+...
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHPPKD--LDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCCCcH--HHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 5555666664 36799999999977432 22233344444 47999999999999885444 3344344322
Q ss_pred ccccceeEEEeecccCCCChHHHHHHHHHHHHh
Q 028776 154 KLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 154 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
...... ++..|+.++.|++++...|.+.+..
T Consensus 168 ~~~~~~--~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDDQW--VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCccce--EEEEecccccCHHHHHHHHHHHhhc
Confidence 221111 7889999999999999999988754
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=139.41 Aligned_cols=154 Identities=24% Similarity=0.343 Sum_probs=110.5
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHh----hccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHH---
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKS----VYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW--- 85 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--- 85 (204)
..+.-++++++|.||+|||||+|.|++ .+++.++.+++.+ ...+..+++.+.++||+|........
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDvi-------ee~i~i~G~pv~l~DTAGiRet~d~VE~i 285 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVI-------EEDINLNGIPVRLVDTAGIRETDDVVERI 285 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceE-------EEEEEECCEEEEEEecCCcccCccHHHHH
Confidence 456789999999999999999999964 3334444443333 34577899999999999965443322
Q ss_pred -----HHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccccccee
Q 028776 86 -----EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (204)
Q Consensus 86 -----~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (204)
...++.+|.+++|+|++++.+-.... .+. ....+.|+++|.||.|+......... .+ ....
T Consensus 286 GIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~--~~------~~~~ 351 (454)
T COG0486 286 GIERAKKAIEEADLVLFVLDASQPLDKEDLA-LIE-----LLPKKKPIIVVLNKADLVSKIELESE--KL------ANGD 351 (454)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-HHH-----hcccCCCEEEEEechhcccccccchh--hc------cCCC
Confidence 23567899999999999863222211 111 22257899999999999876543332 11 2334
Q ss_pred EEEeecccCCCChHHHHHHHHHHHHhc
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 161 ~~~~~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
+++.+|+++|+|++.|.+.|.+.+...
T Consensus 352 ~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 352 AIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 789999999999999999999888655
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-19 Score=150.42 Aligned_cols=155 Identities=20% Similarity=0.231 Sum_probs=104.8
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHH---------H-H
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---------I-W 85 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~-~ 85 (204)
+.++|+++|++|||||||+|++++....... ....|.......+..++.++.+|||||..++.. . .
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn----~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~ 77 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGN----WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCC----CCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHH
Confidence 4579999999999999999999764332211 122333333444666778899999999765421 1 1
Q ss_pred HHhc--ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEE
Q 028776 86 EKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE 163 (204)
Q Consensus 86 ~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (204)
..++ ..+|++++|+|+++.+. ...++.++.. .++|+++|+||+|+.+........+.+. ...+.+++
T Consensus 78 ~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVv 146 (772)
T PRK09554 78 CHYILSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVI 146 (772)
T ss_pred HHHHhccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEE
Confidence 2222 47999999999988643 2234444433 3689999999999875333222222222 12346899
Q ss_pred eecccCCCChHHHHHHHHHHHH
Q 028776 164 AVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 164 ~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
++|+++|+|++++++.+.+...
T Consensus 147 piSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhhh
Confidence 9999999999999999987653
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=147.89 Aligned_cols=163 Identities=20% Similarity=0.195 Sum_probs=106.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE-eCcEEEEEEcCCCcchHHHHHHhcccCCEEE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 96 (204)
+-|+++|+.++|||||+++|++...+..... ..-..|+...+..+.. ++..+.+|||||++++...+...+.++|+++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE-~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEE-KKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhc-ccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 3589999999999999999976432211111 1112344433333322 3457899999999999888888889999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCCCe-EEEEEeCCCCCCccCHHHHHHHhCccc--cccceeEEEeecccCCCCh
Q 028776 97 FVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVSADELARYLDLKK--LDERVCMFEAVSGYDGFGI 173 (204)
Q Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v 173 (204)
+|+|++++.. .+..+.+ .++... ++| +|+|+||+|+.+....++....+.... ......+++++||++|.|+
T Consensus 80 LVVda~eg~~-~qT~ehl-~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI 154 (614)
T PRK10512 80 LVVACDDGVM-AQTREHL-AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGI 154 (614)
T ss_pred EEEECCCCCc-HHHHHHH-HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Confidence 9999987421 2222222 233332 344 689999999976433333332222111 1122467999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028776 174 KESVEWLVEVMER 186 (204)
Q Consensus 174 ~~l~~~i~~~i~~ 186 (204)
+++++.|.+....
T Consensus 155 ~~L~~~L~~~~~~ 167 (614)
T PRK10512 155 DALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999876544
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.4e-19 Score=117.18 Aligned_cols=170 Identities=21% Similarity=0.325 Sum_probs=122.9
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEE-EE---eCcEEEEEEcCCCcch-HHHHHHh
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-EV---SNSKLVFWDLGGQPGL-RSIWEKY 88 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~D~~g~~~~-~~~~~~~ 88 (204)
-.+..||+++|..++|||++++++...... ...++.+|+.-.+... +. -.-.+.++||.|-... ..+-.++
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~----~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy 81 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHV----PGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHY 81 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCC----CCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhH
Confidence 346789999999999999999999653322 2223333443322211 11 1236889999997666 4566677
Q ss_pred cccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCHHHHHHHhCccccccceeEEEeec
Q 028776 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 89 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
+.-+|++++||+..+++||..+...-..+-....+..+|+++.+||+|+.+ ..+.+-.+.+.. ...+...+++
T Consensus 82 ~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~-----rEkvkl~eVt 156 (198)
T KOG3883|consen 82 FQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAK-----REKVKLWEVT 156 (198)
T ss_pred hccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHh-----hhheeEEEEE
Confidence 888999999999999999988766666666666667799999999999965 344444444443 4556788999
Q ss_pred ccCCCChHHHHHHHHHHHHhchhHHH
Q 028776 167 GYDGFGIKESVEWLVEVMERSKRTEM 192 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~i~~~~~~~~ 192 (204)
+++...+-|.|..+...+-+......
T Consensus 157 a~dR~sL~epf~~l~~rl~~pqskS~ 182 (198)
T KOG3883|consen 157 AMDRPSLYEPFTYLASRLHQPQSKST 182 (198)
T ss_pred eccchhhhhHHHHHHHhccCCccccc
Confidence 99999999999999998866555433
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-19 Score=140.79 Aligned_cols=168 Identities=17% Similarity=0.146 Sum_probs=109.6
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCC----------CCCC--ccccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------LPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
..+++++|+++|+.++|||||+++|++....... ...+ .-..|+......++.+..++.++||||+++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 3678899999999999999999999754321100 0011 112233332333334567899999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCe-EEEEEeCCCCCCccC-H----HHHHHHhCccc
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-A----DELARYLDLKK 154 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~----~~~~~~~~~~~ 154 (204)
+...+...+..+|++++|+|+.++.. ......+..+. . .++| +|+++||+|+.+... . +++...+....
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~-~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLAR-Q---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 98877777889999999999986522 22233333322 2 2567 688999999974222 1 23333333222
Q ss_pred cccceeEEEeecccCCC--------ChHHHHHHHHHHHH
Q 028776 155 LDERVCMFEAVSGYDGF--------GIKESVEWLVEVME 185 (204)
Q Consensus 155 ~~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~i~ 185 (204)
......+++++||++|. +++++++.+.+.+.
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 22335789999999983 57888888877765
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-19 Score=133.27 Aligned_cols=158 Identities=27% Similarity=0.377 Sum_probs=118.6
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCc-EEEEEEcCCCc-------chHHHHH
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQP-------GLRSIWE 86 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~g~~-------~~~~~~~ 86 (204)
+....|.++|.||+|||||++++.........+...+..|+++. +.+++. ++.+-|.||.. ...-.+-
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~----v~yddf~q~tVADiPGiI~GAh~nkGlG~~FL 269 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGT----VNYDDFSQITVADIPGIIEGAHMNKGLGYKFL 269 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccce----eeccccceeEeccCccccccccccCcccHHHH
Confidence 34567899999999999999999988877777777777777763 455544 49999999932 2233445
Q ss_pred HhcccCCEEEEEEeCCCC---CCHHHHHHHHHHHHhc-CCCCCCeEEEEEeCCCCCC-ccCH-HHHHHHhCcccccccee
Q 028776 87 KYYEEAHAVVFVIDAACP---SRFEDSKTALEKVLRN-EDLQGAPLLILANKQDLPD-AVSA-DELARYLDLKKLDERVC 160 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~ 160 (204)
..++.++..+||+|++.+ ..++.....+..+..+ ..+.++|.++|+||+|+.+ +... .++.+.++ ..
T Consensus 270 rHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq-------~~ 342 (366)
T KOG1489|consen 270 RHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ-------NP 342 (366)
T ss_pred HHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC-------CC
Confidence 556789999999999988 6677776666666443 3346789999999999964 2222 55555554 23
Q ss_pred EEEeecccCCCChHHHHHHHHHH
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 161 ~~~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
.++++||+.++|++++++.+.+.
T Consensus 343 ~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 343 HVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred cEEEeeeccccchHHHHHHHhhc
Confidence 68999999999999999988753
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=128.74 Aligned_cols=159 Identities=25% Similarity=0.239 Sum_probs=99.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhh-ccCCCCCCCC-------cc--cc-------cccee-----------------eeEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSV-YSNVEGLPPD-------RI--VP-------TVGLN-----------------IGRIE 64 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~-~~~~~~~~~~-------~~--~~-------~~~~~-----------------~~~~~ 64 (204)
||+++|+.++|||||+.++... .....+..+. +. .. .++++ ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999632 2111110000 00 00 01111 01233
Q ss_pred EeCcEEEEEEcCCCcchHHHHHHhcc--cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC
Q 028776 65 VSNSKLVFWDLGGQPGLRSIWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS 142 (204)
Q Consensus 65 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 142 (204)
..+..+.++||||++++.......+. .+|++++|+|++.+.. .....++..+ .. .++|+++|+||+|+.....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence 44678999999999999876666554 6899999999987532 2222333332 22 3689999999999976433
Q ss_pred HHH----HHHHhCccc---------------------cccceeEEEeecccCCCChHHHHHHHHH
Q 028776 143 ADE----LARYLDLKK---------------------LDERVCMFEAVSGYDGFGIKESVEWLVE 182 (204)
Q Consensus 143 ~~~----~~~~~~~~~---------------------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 182 (204)
..+ +...+.... ......|++.+|+.+|+|++++++.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 333 333333110 1123458999999999999999887743
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=143.44 Aligned_cols=161 Identities=24% Similarity=0.296 Sum_probs=103.0
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE----------------eCcEEEEEEcCC
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----------------SNSKLVFWDLGG 77 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~D~~g 77 (204)
..+.+.|+++|++++|||||+++|++.... ......+.++++..+..... .-..+.+|||||
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG 80 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPG 80 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCC
Confidence 345678999999999999999999653211 11111122223222211110 011378999999
Q ss_pred CcchHHHHHHhcccCCEEEEEEeCCC---CCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC------------
Q 028776 78 QPGLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS------------ 142 (204)
Q Consensus 78 ~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------ 142 (204)
++.+...+...+..+|++++|+|+++ +.++..+ . ++.. .++|+++++||+|+.....
T Consensus 81 ~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~-~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~ 152 (586)
T PRK04004 81 HEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAI----N-ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIE 152 (586)
T ss_pred hHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----H-HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHh
Confidence 99999888888899999999999987 3333322 2 2222 4689999999999853100
Q ss_pred --HH-----------HHHHHhCcccc----------ccceeEEEeecccCCCChHHHHHHHHHHH
Q 028776 143 --AD-----------ELARYLDLKKL----------DERVCMFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 143 --~~-----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
.. ++...+....+ .....+++++||++|.|++++++.+....
T Consensus 153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 01 11112221111 12457899999999999999999886543
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-19 Score=118.74 Aligned_cols=135 Identities=24% Similarity=0.319 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCC----CcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----QPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~d 93 (204)
-||+++|+.|||||||+++|.+ ....+..|..+. +.+ .++|||| ++.+..........+|
T Consensus 2 krimliG~~g~GKTTL~q~L~~--------~~~~~~KTq~i~-----~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad 65 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG--------EEIRYKKTQAIE-----YYD---NTIDTPGEYIENPRFYHALIVTAQDAD 65 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC--------CCCCcCccceeE-----ecc---cEEECChhheeCHHHHHHHHHHHhhCC
Confidence 3899999999999999999944 222333333332 221 3599999 4556665666667899
Q ss_pred EEEEEEeCCCCCC-HHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC-CccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 94 AVVFVIDAACPSR-FEDSKTALEKVLRNEDLQGAPLLILANKQDLP-DAVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
.+++|.|++++.+ |.. .+... -.+|+|=|+||+|+. +..+.+...+++...... .++++|+.+|+
T Consensus 66 ~V~ll~dat~~~~~~pP------~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~e 132 (143)
T PF10662_consen 66 VVLLLQDATEPRSVFPP------GFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGE 132 (143)
T ss_pred EEEEEecCCCCCccCCc------hhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCc
Confidence 9999999998754 332 12122 258999999999998 455666766777644442 35999999999
Q ss_pred ChHHHHHHHH
Q 028776 172 GIKESVEWLV 181 (204)
Q Consensus 172 ~v~~l~~~i~ 181 (204)
|+++|.+.|.
T Consensus 133 Gi~eL~~~L~ 142 (143)
T PF10662_consen 133 GIEELKDYLE 142 (143)
T ss_pred CHHHHHHHHh
Confidence 9999998874
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.4e-18 Score=127.08 Aligned_cols=129 Identities=24% Similarity=0.259 Sum_probs=86.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCC--CC---------CCCcc-------ccccceeeeEEEEeCcEEEEEEcCCCc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVE--GL---------PPDRI-------VPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~--~~---------~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~g~~ 79 (204)
-+|+++|++|+|||||+++|+....... +. ....+ ..++......+.+.+.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5799999999999999999964322111 00 00010 122233344577788999999999999
Q ss_pred chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC---HHHHHHHhC
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLD 151 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~ 151 (204)
++.......++.+|++++|+|+.+... .....++.. ... .++|+++++||+|+..... .+++++.++
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~-~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEV-CRL---RGIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHH-HHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 988877788899999999999987532 223334332 222 4689999999999866432 345554443
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-19 Score=146.33 Aligned_cols=146 Identities=22% Similarity=0.254 Sum_probs=96.0
Q ss_pred cCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHH------HHHhc--ccCCEE
Q 028776 24 GIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI------WEKYY--EEAHAV 95 (204)
Q Consensus 24 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~i 95 (204)
|.+|||||||+|++++..... ......|.......+.+++.++.+|||||+.++... ...++ +.+|++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v----~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvv 76 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTV----GNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLV 76 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCee----cCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEE
Confidence 899999999999997643211 111223333334446667778999999998765322 22232 469999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHH
Q 028776 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 175 (204)
++|+|+++.+. ...+..++.. .++|+++|+||+|+.+........+.+. +..+.+++++||++|+|+++
T Consensus 77 I~VvDat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 77 VNVVDASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIER 145 (591)
T ss_pred EEEecCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHH
Confidence 99999987532 2233333332 3689999999999865322111112221 12346899999999999999
Q ss_pred HHHHHHHHH
Q 028776 176 SVEWLVEVM 184 (204)
Q Consensus 176 l~~~i~~~i 184 (204)
+++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-18 Score=136.25 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=108.5
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCC----------CCCCCc--cccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
..+++++|+++|++++|||||+++|++...... ....++ -..|+......++.++.++.++||||+.+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 567889999999999999999999975322111 000111 11233332333444567899999999998
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEE-EEEeCCCCCCcc-CHH----HHHHHhCccc
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDLPDAV-SAD----ELARYLDLKK 154 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~-~~~----~~~~~~~~~~ 154 (204)
+...+...+..+|++++|+|+.+... .+....+..+ .. .++|.+ +++||+|+.+.. ..+ ++..++....
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~-~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 88888888889999999999987421 2222333322 22 357755 679999997422 122 3333333222
Q ss_pred cccceeEEEeecccCCC----------ChHHHHHHHHHHHH
Q 028776 155 LDERVCMFEAVSGYDGF----------GIKESVEWLVEVME 185 (204)
Q Consensus 155 ~~~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~i~ 185 (204)
......+++++||.+|. ++.+|++.|.+.+.
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 22235789999999984 67788888877654
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-18 Score=136.64 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=100.6
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCC----------CCCCc--cccccceeeeEEEEeCcEEEEEEcCCCcch
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------LPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (204)
.+++++|+++|++++|||||+++|++......+ ...++ -..|.......+..++.++.++||||+.++
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 578899999999999999999999764322111 00011 112222222234445678999999999998
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCe-EEEEEeCCCCCCccC-H----HHHHHHhCcccc
Q 028776 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-A----DELARYLDLKKL 155 (204)
Q Consensus 82 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~----~~~~~~~~~~~~ 155 (204)
...+...+..+|++++|+|+..+-. .+....+..+ .. .++| +|+++||+|+.+... . +++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLA-KQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888899999999999986532 2333333332 22 3567 778999999975222 2 234444432222
Q ss_pred ccceeEEEeecccCCCC
Q 028776 156 DERVCMFEAVSGYDGFG 172 (204)
Q Consensus 156 ~~~~~~~~~~Sa~~~~~ 172 (204)
.....+++++||.+|.|
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 23357899999999874
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-18 Score=128.31 Aligned_cols=157 Identities=26% Similarity=0.345 Sum_probs=114.6
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCc-------chHHHHHH
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIWEK 87 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~ 87 (204)
...-+++++|.|++|||||++.|++..+....+...+..+..++ +.+++.+++++|+||.- ..++....
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~----l~Y~ga~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGM----LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccce----EeecCceEEEEcCcccccCcccCCCCcceeee
Confidence 34578999999999999999999987777666666655554444 78999999999999832 12345667
Q ss_pred hcccCCEEEEEEeCCCCCC-HHHHHHHHHH----------------------------------------HHhcC-----
Q 028776 88 YYEEAHAVVFVIDAACPSR-FEDSKTALEK----------------------------------------VLRNE----- 121 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~~----- 121 (204)
..++||++++|+|+..+.+ .+.+...+.. ++...
T Consensus 137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA 216 (365)
T COG1163 137 VARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA 216 (365)
T ss_pred eeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccc
Confidence 7899999999999987654 2223222221 11000
Q ss_pred -------------------CCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHHHHHHHHH
Q 028776 122 -------------------DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182 (204)
Q Consensus 122 -------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 182 (204)
....+|.++|.||.|+......+.+.+.. ..+++||+.+.|+++|.+.|++
T Consensus 217 ~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 217 DVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred eEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHH
Confidence 02356999999999997744444444333 5788999999999999999999
Q ss_pred HHH
Q 028776 183 VME 185 (204)
Q Consensus 183 ~i~ 185 (204)
.+.
T Consensus 287 ~L~ 289 (365)
T COG1163 287 VLG 289 (365)
T ss_pred hhC
Confidence 884
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-18 Score=126.47 Aligned_cols=160 Identities=20% Similarity=0.256 Sum_probs=117.5
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCC--------cchHHHHH
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PGLRSIWE 86 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~ 86 (204)
...+.|+|.|.||||||||++.+++......++. ..|.++..+.+.....+++++||||. .....+..
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YP----FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi 241 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYP----FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAI 241 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCC----ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHH
Confidence 3678999999999999999999987554444433 45666777778888999999999992 11222222
Q ss_pred Hhccc-CCEEEEEEeCCC--CCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEE
Q 028776 87 KYYEE-AHAVVFVIDAAC--PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE 163 (204)
Q Consensus 87 ~~~~~-~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (204)
..++. .++|+|++|.+. ..+.+.....+..+-... +.|+++|+||+|..+....+++...+.. ..+....
T Consensus 242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~----~~~~~~~ 314 (346)
T COG1084 242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLE----EGGEEPL 314 (346)
T ss_pred HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHh----hcccccc
Confidence 33333 789999999984 456677777777776664 4899999999999876666666666552 2233356
Q ss_pred eecccCCCChHHHHHHHHHHHH
Q 028776 164 AVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 164 ~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
.+++..+.+++.+...+.....
T Consensus 315 ~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 315 KISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred ceeeeehhhHHHHHHHHHHHhh
Confidence 7888889999988888777643
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.7e-18 Score=129.66 Aligned_cols=160 Identities=24% Similarity=0.314 Sum_probs=112.3
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe-CcEEEEEEcCCC---------cchHHH
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQ---------PGLRSI 84 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~---------~~~~~~ 84 (204)
...+.|+++|.+|+|||||+|+|++.... ..+..+.|...+...+... +..+.+-||-|- +.|.+.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~----~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksT 265 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVY----VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKST 265 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCee----ccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHH
Confidence 46699999999999999999999864433 3344445555555666666 578899999992 222222
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEe
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (204)
.. -...+|.+++|+|+++|.....+... ..++...+..++|+|+|.||+|+..... ....+. ... . ..+.
T Consensus 266 LE-E~~~aDlllhVVDaSdp~~~~~~~~v-~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~---~~~-~-~~v~ 335 (411)
T COG2262 266 LE-EVKEADLLLHVVDASDPEILEKLEAV-EDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELE---RGS-P-NPVF 335 (411)
T ss_pred HH-HhhcCCEEEEEeecCChhHHHHHHHH-HHHHHHcCCCCCCEEEEEecccccCchh---hhhhhh---hcC-C-CeEE
Confidence 22 34679999999999999544444443 4455555446799999999999876433 111111 011 1 5788
Q ss_pred ecccCCCChHHHHHHHHHHHHhch
Q 028776 165 VSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 165 ~Sa~~~~~v~~l~~~i~~~i~~~~ 188 (204)
+||++|.|++.|++.|.+.+....
T Consensus 336 iSA~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 336 ISAKTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred EEeccCcCHHHHHHHHHHHhhhcc
Confidence 999999999999999999887443
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-18 Score=136.78 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=105.7
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCC-------------------------CCC--CccccccceeeeEEEEe
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPP--DRIVPTVGLNIGRIEVS 66 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------------~~~--~~~~~~~~~~~~~~~~~ 66 (204)
.+++++|+++|+.++|||||+.+|+........ ... ..-..++......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 467899999999999999999999532221100 000 11123444445556667
Q ss_pred CcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHH-------HHHHHHHHHHhcCCCCCC-eEEEEEeCCCCC
Q 028776 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE-------DSKTALEKVLRNEDLQGA-PLLILANKQDLP 138 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~ 138 (204)
...+.++|+||+++|...+...+..+|++++|+|+.+. .|+ +..+.+. ++.. .++ ++|+++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEcccCC
Confidence 78899999999999999999999999999999999873 222 2333332 2222 245 578899999986
Q ss_pred C----ccC----HHHHHHHhCccccccceeEEEeecccCCCChHH
Q 028776 139 D----AVS----ADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 139 ~----~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 175 (204)
+ ... .+++..++....+....++++++||.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 2 111 334444444333334457899999999999854
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-18 Score=135.21 Aligned_cols=154 Identities=17% Similarity=0.149 Sum_probs=98.2
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCC----------CCCCCc--cccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
..+++++|+++|+.++|||||+++|++...... ....++ -..|+......++.++.++.+|||||+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 367889999999999999999999964321100 000111 12233333333444566899999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeE-EEEEeCCCCCCccC-H----HHHHHHhCccc
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDLPDAVS-A----DELARYLDLKK 154 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~----~~~~~~~~~~~ 154 (204)
+...+......+|++++|+|+.++.. ....+.+..+. . .++|. |+++||+|+.+... . +++...+....
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~-~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLAR-Q---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHH-H---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 98877777788999999999987422 22223333322 2 24665 47899999975322 1 23444443332
Q ss_pred cccceeEEEeecccCCC
Q 028776 155 LDERVCMFEAVSGYDGF 171 (204)
Q Consensus 155 ~~~~~~~~~~~Sa~~~~ 171 (204)
.....++++++||.+|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 22234789999999875
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=125.22 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=77.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCC-------------CCCCccc--cccceeeeEEE-----EeCcEEEEEEcCCC
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-------------LPPDRIV--PTVGLNIGRIE-----VSNSKLVFWDLGGQ 78 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~-------------~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~D~~g~ 78 (204)
+|+++|+.|+|||||+++|+........ ....+.. .++......+. .....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999754332110 0000011 11111111121 12467899999999
Q ss_pred cchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC
Q 028776 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 79 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 138 (204)
.++.......+..+|++++|+|+.+..++.. ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888999999999999988766532 334333322 358999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=116.59 Aligned_cols=163 Identities=35% Similarity=0.536 Sum_probs=131.2
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
.+.=|++++|-.|+|||||+..|.+ .+... ..||...+..++...+.+++.+|.+|+....+.|..++..+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKd------Drl~q-hvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~ 90 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKD------DRLGQ-HVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDA 90 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcc------ccccc-cCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhce
Confidence 4567899999999999999999932 22222 2345555666788899999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccc------------cccceeEE
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK------------LDERVCMF 162 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~ 162 (204)
+++.+|+.+.+.|.+....+..++........|+++.+||+|.....+.++.+-.+.... .......+
T Consensus 91 iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 91 IVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 999999999999999999998888877667899999999999998888777776664221 12344567
Q ss_pred EeecccCCCChHHHHHHHHHHH
Q 028776 163 EAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 163 ~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
+.||...+.+--+.|.|+.+.+
T Consensus 171 fmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEEccCccceeeeehhhhc
Confidence 7888888888777777776543
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-17 Score=121.07 Aligned_cols=115 Identities=18% Similarity=0.139 Sum_probs=78.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCC--CCc--------c--ccccceeeeEEEEe----------CcEEEEEEcC
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDR--------I--VPTVGLNIGRIEVS----------NSKLVFWDLG 76 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~--------~--~~~~~~~~~~~~~~----------~~~~~~~D~~ 76 (204)
+|+++|+.++|||||+.+|+.......... ... . ..++........++ ...+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999965432111100 000 0 11221111112222 6788999999
Q ss_pred CCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC
Q 028776 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 77 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 138 (204)
|+.++.......++.+|++++|+|+.++..... ...+..... .++|+|+|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999998754432 333333332 357999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=133.75 Aligned_cols=168 Identities=18% Similarity=0.170 Sum_probs=108.7
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCC----------CCCCc--cccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------LPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
..+++++|+++|+.++|||||+++|++....... ...++ -..|+......+..++.++.++||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 4678999999999999999999999763321110 00111 11233333333444567899999999998
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEE-EEEeCCCCCCccC-H----HHHHHHhCccc
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDLPDAVS-A----DELARYLDLKK 154 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~-~----~~~~~~~~~~~ 154 (204)
+.......+..+|++++|+|+.++.. ......+..+ .. .++|.+ +++||+|+..... . .++...+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 88888888899999999999987532 2233333332 22 357875 6899999974211 2 23333333222
Q ss_pred cccceeEEEeecccCCC----------ChHHHHHHHHHHHH
Q 028776 155 LDERVCMFEAVSGYDGF----------GIKESVEWLVEVME 185 (204)
Q Consensus 155 ~~~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~i~ 185 (204)
......+++++||+++. ++.++++.|.+.+.
T Consensus 163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 22345789999999875 46677777776553
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=134.38 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=101.8
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCC----------CCc--cccccceeeeEEEEeCcEEEEEEcCCCcch
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (204)
.++.++|+++|++++|||||+++|+.......... .++ -..++......+..++.++.++|+||++++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 56789999999999999999999975322111111 111 112333333335556788999999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCe-EEEEEeCCCCCCccC-HH----HHHHHhCcccc
Q 028776 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-AD----ELARYLDLKKL 155 (204)
Q Consensus 82 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 155 (204)
...+...+..+|++++|+|+.+... .+..+++... .. .++| +|+++||+|+.+... .+ ++...+....+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA-KQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 8888888899999999999987632 2333444333 22 3566 788999999975221 22 33333332222
Q ss_pred ccceeEEEeecccCCCC
Q 028776 156 DERVCMFEAVSGYDGFG 172 (204)
Q Consensus 156 ~~~~~~~~~~Sa~~~~~ 172 (204)
.....+++++|+.++.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 33468899999988753
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=118.52 Aligned_cols=153 Identities=22% Similarity=0.224 Sum_probs=91.8
Q ss_pred EEEEEcCCCCChHHHHHHHHh--hccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc----------hHHHHH
Q 028776 19 HVLILGIDKAGKTTLLEKLKS--VYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG----------LRSIWE 86 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~ 86 (204)
.|+++|++|+|||||++.+++ ......+. ...+..... ... ...+.+|||||... +.....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~----~~~t~~~~~--~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 73 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKT----PGKTQLINF--FNV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIE 73 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCC----CCcceeEEE--EEc-cCeEEEecCCCccccccCHHHHHHHHHHHH
Confidence 489999999999999999973 22211111 111111111 222 23889999999433 233333
Q ss_pred Hhcc---cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccc-ccceeEE
Q 028776 87 KYYE---EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMF 162 (204)
Q Consensus 87 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 162 (204)
.++. ..+++++++|..+..+... ..+...+.. .+.|+++++||+|+.................. .....++
T Consensus 74 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (170)
T cd01876 74 EYLENRENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPI 148 (170)
T ss_pred HHHHhChhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCce
Confidence 3443 4678999999987632221 111122222 25899999999999653332222222211110 1344678
Q ss_pred EeecccCCCChHHHHHHHHHH
Q 028776 163 EAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 163 ~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
+++|++++.++++++++|.+.
T Consensus 149 ~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 149 ILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHHh
Confidence 899999999999999999875
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=134.53 Aligned_cols=168 Identities=20% Similarity=0.189 Sum_probs=107.0
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCC----------CCCCc--cccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------LPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
..+++++|+++|+.++|||||+++|++....... ...++ -..|+......++.++.++.++||||+.+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 4678899999999999999999999643211000 00011 12344443444555667899999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCe-EEEEEeCCCCCCccC-HH----HHHHHhCccc
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-AD----ELARYLDLKK 154 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~----~~~~~~~~~~ 154 (204)
+...+...+..+|++++|+|+.++.. .+..+.+.. +.. .++| +|+++||+|+.+... .+ ++...+....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~-~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILL-ARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHH-HHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 98877777788999999999986532 222333332 222 3578 578999999975221 22 2223332212
Q ss_pred cccceeEEEeeccc---CCCC-------hHHHHHHHHHHHH
Q 028776 155 LDERVCMFEAVSGY---DGFG-------IKESVEWLVEVME 185 (204)
Q Consensus 155 ~~~~~~~~~~~Sa~---~~~~-------v~~l~~~i~~~i~ 185 (204)
.....++++++|+. +|.| +.+|++.+.+.+.
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 22235788888775 4544 6788888887764
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=132.48 Aligned_cols=163 Identities=22% Similarity=0.262 Sum_probs=115.9
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe---CcEEEEEEcCCCcchHHHHHHhccc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---NSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
.+.+-|+++|+...|||||+..+.+... ...+.-..|..+-.+.+..+ ...+.++|||||+.|..+......-
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~V----a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~v 78 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNV----AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASV 78 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcc----ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCcc
Confidence 3567899999999999999999965322 22233334444445555553 4689999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccc----ccceeEEEeecc
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL----DERVCMFEAVSG 167 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa 167 (204)
+|.+++|+|+++.- +.+....+.... ..+.|+|+++||+|+.+. ..+.+...+....+ ......++++||
T Consensus 79 tDIaILVVa~dDGv----~pQTiEAI~hak-~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA 152 (509)
T COG0532 79 TDIAILVVAADDGV----MPQTIEAINHAK-AAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSA 152 (509)
T ss_pred ccEEEEEEEccCCc----chhHHHHHHHHH-HCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeec
Confidence 99999999999862 122222222111 157999999999999853 33444444432222 234578999999
Q ss_pred cCCCChHHHHHHHHHHHHhc
Q 028776 168 YDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 168 ~~~~~v~~l~~~i~~~i~~~ 187 (204)
++|+|+++|++.+.-..+-.
T Consensus 153 ~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 153 KTGEGIDELLELILLLAEVL 172 (509)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988665443
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=123.84 Aligned_cols=141 Identities=17% Similarity=0.132 Sum_probs=92.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCC------------CCC--CccccccceeeeEEEEeCcEEEEEEcCCCcchHHH
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG------------LPP--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 84 (204)
+|+++|++|+|||||+++|+........ ... ..-..++......+.+.+.++.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999643221110 000 11122344444556778899999999999999888
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCcc---CHHHHHHHhCccccccceeE
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELARYLDLKKLDERVCM 161 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~ 161 (204)
+...++.+|++++|+|+.+... ......+..... .++|+++++||+|+.... ..+++...++. .....
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~-~~t~~~~~~~~~----~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~----~~~~~ 151 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVE-PQTETVWRQADR----YNVPRIAFVNKMDRTGADFFRVVEQIREKLGA----NPVPL 151 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCC-HHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC----CceEE
Confidence 8999999999999999987532 222333333322 368999999999987532 23444454442 22233
Q ss_pred EEeeccc
Q 028776 162 FEAVSGY 168 (204)
Q Consensus 162 ~~~~Sa~ 168 (204)
.+++|+.
T Consensus 152 ~~Pisa~ 158 (270)
T cd01886 152 QLPIGEE 158 (270)
T ss_pred EeccccC
Confidence 4555554
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=137.64 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=102.4
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCC--------------CCCC-------------Cc--cccccceeeeEEE
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPP-------------DR--IVPTVGLNIGRIE 64 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------~~~~-------------~~--~~~~~~~~~~~~~ 64 (204)
.+..++|+++|+.++|||||+++|+....... +... ++ -..|+...+..+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46789999999999999999999964332111 1100 00 0123334444455
Q ss_pred EeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cC
Q 028776 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VS 142 (204)
Q Consensus 65 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~ 142 (204)
.++.++.++||||++.+...+...+..+|++++|+|+..+-.- .....+ .++... ...|+|+++||+|+... ..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~-qt~~~~-~l~~~l--g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-QTRRHS-FIATLL--GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc-cchHHH-HHHHHh--CCCceEEEEEeeccccchhHH
Confidence 6778999999999999887777778999999999999865211 111111 122221 13589999999999742 22
Q ss_pred HHHHHHHhCcc--ccc-cceeEEEeecccCCCChHHHH
Q 028776 143 ADELARYLDLK--KLD-ERVCMFEAVSGYDGFGIKESV 177 (204)
Q Consensus 143 ~~~~~~~~~~~--~~~-~~~~~~~~~Sa~~~~~v~~l~ 177 (204)
.+++...+... ... ....+++++||++|.|++++-
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 33333333210 000 235789999999999998753
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-18 Score=135.27 Aligned_cols=170 Identities=16% Similarity=0.152 Sum_probs=109.9
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCc-cccccceeee---------------EEE------------
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-IVPTVGLNIG---------------RIE------------ 64 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~---------------~~~------------ 64 (204)
.....++|+++|+..+|||||+.+|++........+..+ .....++... ..+
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 456789999999999999999999976443222211110 0011111100 000
Q ss_pred ----EeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc
Q 028776 65 ----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (204)
Q Consensus 65 ----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 140 (204)
.....+.++|+||++.+...+...+..+|++++|+|+.++..-.+..+.+. ++... .-.|+|+|+||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCH
Confidence 002368999999999999888888899999999999987421122223322 22222 23578999999999753
Q ss_pred cCH----HHHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHHHHhc
Q 028776 141 VSA----DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 141 ~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
... +++...+... .....+++++||++|.|+++|++.|.+.++..
T Consensus 187 ~~~~~~~~ei~~~l~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 332 2333332211 12467899999999999999999999877543
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=120.98 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=99.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcc-ccccceeeeEEEEeCcEEEEEEcCCCcchHH-----HHHHhcc
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS-----IWEKYYE 90 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~ 90 (204)
.++|+++|.+|+|||||+++|++......+...... ..+.....+.. .....+.+|||||...... .....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999874332212111111 11111111100 1134789999999643211 1122356
Q ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC---------HHHHH----HHhCccc--c
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---------ADELA----RYLDLKK--L 155 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~----~~~~~~~--~ 155 (204)
++|+++++.+. +|......+...+... ..|+++|+||+|+..... .+++. ..+.... .
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78998888442 2444444444444442 579999999999954211 12222 2221111 1
Q ss_pred ccceeEEEeeccc--CCCChHHHHHHHHHHHHhchhHHHH
Q 028776 156 DERVCMFEAVSGY--DGFGIKESVEWLVEVMERSKRTEML 193 (204)
Q Consensus 156 ~~~~~~~~~~Sa~--~~~~v~~l~~~i~~~i~~~~~~~~~ 193 (204)
.....+++.+|+. .+.++..+.+.+...+.++.++...
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 192 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHVFL 192 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHHHH
Confidence 1234578999998 5789999999999999887766443
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=134.83 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=105.4
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCC-------------------------CCC--CccccccceeeeEEEEe
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPP--DRIVPTVGLNIGRIEVS 66 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------------~~~--~~~~~~~~~~~~~~~~~ 66 (204)
.+++++|+++|+.++|||||+.+|+........ ... ..-..++...+..+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 467899999999999999999999542221110 000 01123444445556677
Q ss_pred CcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCC---CH---HHHHHHHHHHHhcCCCCCC-eEEEEEeCCCCCC
Q 028776 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---RF---EDSKTALEKVLRNEDLQGA-PLLILANKQDLPD 139 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~ 139 (204)
+..+.++||||+.+|...+...+..+|++++|+|+..+. .| .+..+.+.. +.. .++ ++|+++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~-~~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL-AFT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH-HHH---cCCCeEEEEEEcccccc
Confidence 889999999999999998888899999999999998652 11 123333332 222 244 4789999999532
Q ss_pred ----ccCHH----HHHHHhCccccccceeEEEeecccCCCChHH
Q 028776 140 ----AVSAD----ELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 140 ----~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 175 (204)
+..++ ++...+.........++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 22333 3333333333333468999999999999964
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-17 Score=123.68 Aligned_cols=116 Identities=20% Similarity=0.229 Sum_probs=81.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCC-------CCCCc-------cccccceeeeEEEEeCcEEEEEEcCCCcchHHH
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-------LPPDR-------IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 84 (204)
+|+++|++|+|||||+++++........ ....+ ...++......+.+.+.++.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999643221110 00000 012333334456677889999999999988888
Q ss_pred HHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
+...+..+|++++|+|+.+...... ...+..+. . .++|.++++||+|+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~-~---~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFAD-E---AGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHH-H---cCCCEEEEEECCccCC
Confidence 8889999999999999997654322 23333222 2 4689999999999875
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=133.30 Aligned_cols=163 Identities=18% Similarity=0.242 Sum_probs=111.3
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCC------------CCC--c-------------cccccceeeeEEEEe
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------------PPD--R-------------IVPTVGLNIGRIEVS 66 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~------------~~~--~-------------~~~~~~~~~~~~~~~ 66 (204)
.+++++++++|+..+|||||+.+|+......... ... . -..|+......++.+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 4688999999999999999999994322222110 000 0 022333344445556
Q ss_pred CcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCC---CHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--cc
Q 028776 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AV 141 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~ 141 (204)
...+.++|+||+.+|-..+.....++|+.|+|+|+++.+ .|.-..+...+++......-..+|+++||+|+.+ +.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence 778999999999999999999999999999999999774 2211222222332222223568999999999986 45
Q ss_pred CHHHHHHHhCc----cccccceeEEEeecccCCCChHHH
Q 028776 142 SADELARYLDL----KKLDERVCMFEAVSGYDGFGIKES 176 (204)
Q Consensus 142 ~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~~v~~l 176 (204)
.++++...+.. ..++...++|+++|+..|.|+.+.
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 55666655542 233445789999999999987653
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=131.93 Aligned_cols=154 Identities=17% Similarity=0.135 Sum_probs=97.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCC--------------CC-------------CCc--cccccceeeeEEEEeCc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG--------------LP-------------PDR--IVPTVGLNIGRIEVSNS 68 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~--------------~~-------------~~~--~~~~~~~~~~~~~~~~~ 68 (204)
++|+++|+.++|||||+++|+........ .. .++ -..|+...+..+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999543321111 00 000 01233333444556778
Q ss_pred EEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCcc--CHHHH
Q 028776 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADEL 146 (204)
Q Consensus 69 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~ 146 (204)
++.++||||++++...+...+..+|++++|+|+..+.. .+..+.+. ++... ...++|+++||+|+.... ..+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSY-IASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHH-HHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999998777778899999999999986532 11122222 22222 234789999999997522 12222
Q ss_pred HHHhCc--cccccceeEEEeecccCCCChHH
Q 028776 147 ARYLDL--KKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 147 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 175 (204)
...+.. ........+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 332221 01112356799999999999986
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-17 Score=136.92 Aligned_cols=121 Identities=23% Similarity=0.200 Sum_probs=89.0
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCC-------CCCC-------CccccccceeeeEEEEeCcEEEEEEcCCCc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------GLPP-------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 79 (204)
..+..+|+++|+.|+|||||+++|+....... +... .....++......+.+....+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 34678999999999999999999965332110 0000 012334555555677788999999999999
Q ss_pred chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
++...+...++.+|++++|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCC
Confidence 9998899999999999999999987655433 33333322 3689999999999876
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-17 Score=132.73 Aligned_cols=154 Identities=21% Similarity=0.322 Sum_probs=110.5
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch-----HH-HHHHhc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-----RS-IWEKYY 89 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~-~~~~~~ 89 (204)
+..+|+++|+||||||||+|+|++..........- |..-..+.....+..++++|.||.-+. ++ ..+.++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGv----TVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l 77 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGV----TVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFL 77 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCe----eEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHH
Confidence 45679999999999999999998755444443333 333344456777888999999993222 22 223333
Q ss_pred --ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC----ccCHHHHHHHhCccccccceeEEE
Q 028776 90 --EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFE 163 (204)
Q Consensus 90 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~ 163 (204)
..+|++|-|+|+++.+ .....-.+++. -+.|+|++.|++|..+ ..+.+.+.+.++ +|++
T Consensus 78 l~~~~D~ivnVvDAtnLe---RnLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG--------vPVv 142 (653)
T COG0370 78 LEGKPDLIVNVVDATNLE---RNLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG--------VPVV 142 (653)
T ss_pred hcCCCCEEEEEcccchHH---HHHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC--------CCEE
Confidence 4589999999998753 22222233443 3689999999999976 566677777665 8999
Q ss_pred eecccCCCChHHHHHHHHHHHHhch
Q 028776 164 AVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 164 ~~Sa~~~~~v~~l~~~i~~~i~~~~ 188 (204)
++||++|.|+++++..+.+......
T Consensus 143 ~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 143 PTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred EEEeecCCCHHHHHHHHHHhccccc
Confidence 9999999999999999987655444
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=138.50 Aligned_cols=160 Identities=18% Similarity=0.125 Sum_probs=102.4
Q ss_pred hcCCcccEEEEEcCCCCChHHHHHHHHhhccCCC--------------CCCCCc---------------cccccceeeeE
Q 028776 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPPDR---------------IVPTVGLNIGR 62 (204)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------~~~~~~---------------~~~~~~~~~~~ 62 (204)
...++.++|+++|++++|||||+++|+....... +..+.. -..|+...+..
T Consensus 19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 3557789999999999999999999964332111 110010 11233333445
Q ss_pred EEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--c
Q 028776 63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--A 140 (204)
Q Consensus 63 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~ 140 (204)
+..++.++.++||||++.+...+...+..+|++++|+|+..+.. .+....+. ++... ...|+|+++||+|+.+ .
T Consensus 99 ~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~-~~~~~--~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 99 FATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSF-IASLL--GIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred EccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHH-HHHHh--CCCeEEEEEEecccccchh
Confidence 66677889999999999887777777899999999999976532 11111211 22221 2368999999999974 2
Q ss_pred cCHHHHHHHhCc--cccccceeEEEeecccCCCChHH
Q 028776 141 VSADELARYLDL--KKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 141 ~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 175 (204)
...+++...+.. ........+++++||++|.|+++
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 222333333221 11112346799999999999984
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-18 Score=117.32 Aligned_cols=159 Identities=15% Similarity=0.331 Sum_probs=130.5
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe----CcEEEEEEcCCCcchHHHHHHhcc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
...++++++|..|.||||++++.+ .+.+...+..+++.......+. .+++..|||.|++.+......++-
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~l------tgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI 81 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHL------TGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYI 81 (216)
T ss_pred cceEEEEEecCCcccccchhhhhh------cccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEE
Confidence 357999999999999999999983 4677788888888877764432 378999999999999998888888
Q ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCC
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
+.-+.++++|+...-.+.++..|.+++...+ .++|+++++||.|.......... .......++.+++.||+.+
T Consensus 82 ~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k~-----v~~~rkknl~y~~iSaksn 154 (216)
T KOG0096|consen 82 QGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAKP-----VSFHRKKNLQYYEISAKSN 154 (216)
T ss_pred ecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccccccc-----ceeeecccceeEEeecccc
Confidence 8889999999998878889999999999887 46999999999998654311111 1222356788999999999
Q ss_pred CChHHHHHHHHHHHHh
Q 028776 171 FGIKESVEWLVEVMER 186 (204)
Q Consensus 171 ~~v~~l~~~i~~~i~~ 186 (204)
.|.+.-|.|+.+++.-
T Consensus 155 ~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 155 YNFERPFLWLARKLTG 170 (216)
T ss_pred cccccchHHHhhhhcC
Confidence 9999999999998853
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-17 Score=131.96 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=83.6
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCC--CCC------C------Ccc----ccccceeeeEEEEeCcEEEEEEcC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLP------P------DRI----VPTVGLNIGRIEVSNSKLVFWDLG 76 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--~~~------~------~~~----~~~~~~~~~~~~~~~~~~~~~D~~ 76 (204)
.+..+|+|+|+.++|||||+++|+....... +.. . ... ..++......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999953221110 000 0 001 112223334466778899999999
Q ss_pred CCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc
Q 028776 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (204)
Q Consensus 77 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 140 (204)
|+.++.......++.+|++++|+|+.+... .....++... .. .++|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~---~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVC-RL---RDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHH-Hh---cCCCEEEEEECCccccc
Confidence 999998888888899999999999987532 2233343322 22 47899999999998753
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-17 Score=122.02 Aligned_cols=166 Identities=25% Similarity=0.331 Sum_probs=115.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCc-------chHHHHHHhcc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIWEKYYE 90 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~~ 90 (204)
-.|.++|.|++|||||++.+++.......+...+..|.+++... .....+.+-|.||.. .....+-..++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 35789999999999999999988877777777777777765322 345569999999932 22334555567
Q ss_pred cCCEEEEEEeCCCCCC---HHHHHHHHHHHHhc-CCCCCCeEEEEEeCCCCCC-ccCHHHHHHHhCccccccceeEEEee
Q 028776 91 EAHAVVFVIDAACPSR---FEDSKTALEKVLRN-EDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAV 165 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (204)
.+.++++|+|++..+. .++.......+..+ ....++|.++|+||+|+.. +...++....+..... ...++++
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~---~~~~~~I 313 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG---WEVFYLI 313 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC---CCcceee
Confidence 8999999999985442 33333333333333 2336799999999999644 4445555555542211 1112229
Q ss_pred cccCCCChHHHHHHHHHHHHhchh
Q 028776 166 SGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 166 Sa~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
|+.+++|++++...+.+.+.+...
T Consensus 314 Sa~t~~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 314 SALTREGLDELLRALAELLEETKA 337 (369)
T ss_pred ehhcccCHHHHHHHHHHHHHHhhh
Confidence 999999999999999999987763
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=129.34 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=114.9
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCc-------cccccceeee----EEEEe---CcEEEEEEcCCCcc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-------IVPTVGLNIG----RIEVS---NSKLVFWDLGGQPG 80 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~----~~~~~---~~~~~~~D~~g~~~ 80 (204)
.+--++.|+-+...|||||..+|+...........+. +...-+++.. .+-+. ...++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5567899999999999999999976555333211111 1111122111 12233 37789999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccccccee
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (204)
|.......+.-||++++|+|+++.---......+..+. .+..+|.|+||+|+..+. .+++...+...+ .....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad-pe~V~~q~~~lF-~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD-PERVENQLFELF-DIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC-HHHHHHHHHHHh-cCCcc
Confidence 99999999999999999999997631122222222222 368999999999997733 333333333222 24455
Q ss_pred EEEeecccCCCChHHHHHHHHHHHHhchh
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 161 ~~~~~Sa~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
+++.+||++|.|++++++.|++.++....
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 89999999999999999999999976543
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=111.22 Aligned_cols=163 Identities=27% Similarity=0.438 Sum_probs=116.1
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcc--
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE-- 90 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-- 90 (204)
+......|+++|+.+||||+|.-+|.. +..+.++. .+..+.......+-..+++|.||+.+.+.....+++
T Consensus 34 rrs~~~~Vll~Gl~dSGKT~LF~qL~~------gs~~~Tvt-Siepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~ 106 (238)
T KOG0090|consen 34 RRSKQNAVLLVGLSDSGKTSLFTQLIT------GSHRGTVT-SIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHN 106 (238)
T ss_pred hhccCCcEEEEecCCCCceeeeeehhc------CCccCeee-eeccceeeEeecCcceEEEeCCCcHHHHHHHHHHcccc
Confidence 344557899999999999999999843 32222222 122223334455566899999999999887777776
Q ss_pred -cCCEEEEEEeCCC-CCCHHHHHHHHHHHHhcC--CCCCCeEEEEEeCCCCCCccCHHHHHHHhCcc-------------
Q 028776 91 -EAHAVVFVIDAAC-PSRFEDSKTALEKVLRNE--DLQGAPLLILANKQDLPDAVSADELARYLDLK------------- 153 (204)
Q Consensus 91 -~~d~ii~v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------------- 153 (204)
.+-++|||+|+.- ........+.+..++... ....+|+++++||.|+.-....+-+++.+..+
T Consensus 107 ~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~ 186 (238)
T KOG0090|consen 107 YSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRS 186 (238)
T ss_pred ccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 6999999999963 334566777777777655 34678999999999998766655555444310
Q ss_pred ----------------------ccccceeEEEeecccCCCChHHHHHHHHHH
Q 028776 154 ----------------------KLDERVCMFEAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 154 ----------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
.+....+.|.++|++.+ +++++-+|+.++
T Consensus 187 ~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 187 ISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 01125677999999998 799999998875
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-16 Score=126.65 Aligned_cols=120 Identities=19% Similarity=0.204 Sum_probs=82.7
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCC--CCCC---------C---Ccc----ccccceeeeEEEEeCcEEEEEEcC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV--EGLP---------P---DRI----VPTVGLNIGRIEVSNSKLVFWDLG 76 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~--~~~~---------~---~~~----~~~~~~~~~~~~~~~~~~~~~D~~ 76 (204)
.+..+|+++|++++|||||+++|+...... .+.. . ... ..++......+++.+..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 467899999999999999999985321111 0000 0 000 122223334567788999999999
Q ss_pred CCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 77 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
|+.++.......+..+|++++|+|+.+.-. .....++. .... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 999888877888899999999999987521 23334443 3332 4689999999999864
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-17 Score=131.66 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=117.4
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccC--CCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
....++|+++|+.||||||||-++....-. .+.... +.++..+ +.-+.+...++||+....-.......+++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~---~i~IPad---vtPe~vpt~ivD~ss~~~~~~~l~~Eirk 79 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP---RILIPAD---VTPENVPTSIVDTSSDSDDRLCLRKEIRK 79 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCC---ccccCCc---cCcCcCceEEEecccccchhHHHHHHHhh
Confidence 467899999999999999999999643221 111111 1111111 22345668999999877777777888899
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCC--CCCeEEEEEeCCCCCCccCH--HH-HHHHhCccccccceeEEEeec
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDL--QGAPLLILANKQDLPDAVSA--DE-LARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~S 166 (204)
+|+++++|+++++++++.+...|.-++++... .+.|+|+|+||+|..+...- +. ....+. .....-.+++||
T Consensus 80 A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~---~f~EiEtciecS 156 (625)
T KOG1707|consen 80 ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMI---AFAEIETCIECS 156 (625)
T ss_pred cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHH---HhHHHHHHHhhh
Confidence 99999999999999999998877777776543 35899999999999873222 22 222221 122334589999
Q ss_pred ccCCCChHHHHHHHHHHHHh
Q 028776 167 GYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~i~~ 186 (204)
|++..++.|+|-.-..++..
T Consensus 157 A~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 157 ALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred hhhhhhhHhhhhhhhheeec
Confidence 99999999999888777643
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=117.54 Aligned_cols=163 Identities=20% Similarity=0.283 Sum_probs=103.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE-eCcEEEEEEcCCCcchHH-----HHHHhcccC
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRS-----IWEKYYEEA 92 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~ 92 (204)
||+++|+.||||||..+.+.+.+.+ .......+|..+....+.. ....+.+||+||+..+.. .....++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p---~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP---RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G---GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc---hhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 7999999999999999999765432 2223445666666555543 467999999999876644 357788999
Q ss_pred CEEEEEEeCCCCCCHHH---HHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhC----cccc--ccceeEEE
Q 028776 93 HAVVFVIDAACPSRFED---SKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD----LKKL--DERVCMFE 163 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~--~~~~~~~~ 163 (204)
+++|+|+|+...+-.+. ....+..+.... ++..+-+++.|+|+..+...++..+... .... ....+.++
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~ 155 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFF 155 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEE
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEE
Confidence 99999999985442222 233333344433 7899999999999987444333333322 1111 11248899
Q ss_pred eecccCCCChHHHHHHHHHHHHhc
Q 028776 164 AVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 164 ~~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
.+|..+ +.+-+.|..|++.+-+.
T Consensus 156 ~TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 156 LTSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp EE-TTS-THHHHHHHHHHHTTSTT
T ss_pred eccCcC-cHHHHHHHHHHHHHccc
Confidence 999998 57999999999887543
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-17 Score=116.50 Aligned_cols=129 Identities=27% Similarity=0.412 Sum_probs=78.8
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE-E-EEeCcEEEEEEcCCCcchHHHHHHh---cc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-I-EVSNSKLVFWDLGGQPGLRSIWEKY---YE 90 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~D~~g~~~~~~~~~~~---~~ 90 (204)
+...|+++|+.|+|||+|..+|... ....++.+. ..+... + ......+.++|+|||++.+...... ..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~------~~~~T~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~ 74 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNG------KTVPTVTSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLS 74 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHS------S---B---S-SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHG
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcC------CcCCeeccc-cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchh
Confidence 3568999999999999999999653 222222221 111110 0 1145679999999999987755544 77
Q ss_pred cCCEEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--CCCCeEEEEEeCCCCCCccCHHHHHHHhC
Q 028776 91 EAHAVVFVIDAAC-PSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPDAVSADELARYLD 151 (204)
Q Consensus 91 ~~d~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 151 (204)
.+.+||||+|+.. +.......+.+..++.... ...+|+++++||.|+........++..+.
T Consensus 75 ~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 75 NAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred hCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence 8999999999974 3345556666666654332 35689999999999988766666666654
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-17 Score=109.43 Aligned_cols=163 Identities=18% Similarity=0.229 Sum_probs=121.7
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeE----EEEeCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
-.+||.++|++..|||||+-.+.+ ....+.+..+.++++.. +...++.+.+||.+|++++..+.+-..++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~------~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d 92 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQ------NEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD 92 (205)
T ss_pred eEEEEEeecccccCceeeehhhhc------chhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence 468999999999999999988843 33334455566655443 33456788999999999998888888889
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhC--ccccccceeEEEeecccC
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~ 169 (204)
+-++++++|++.++++.-+..|+++...... ..+| |+|++|.|+.-....+....... ....+..+.+.+.||+.+
T Consensus 93 svaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~ 170 (205)
T KOG1673|consen 93 SVAILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSH 170 (205)
T ss_pred cEEEEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccc
Confidence 9999999999999999999999988765542 3455 67899999865333222111111 122235677889999999
Q ss_pred CCChHHHHHHHHHHHHh
Q 028776 170 GFGIKESVEWLVEVMER 186 (204)
Q Consensus 170 ~~~v~~l~~~i~~~i~~ 186 (204)
+.|+..+|.-+..++-.
T Consensus 171 sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 171 SINVQKIFKIVLAKLFN 187 (205)
T ss_pred cccHHHHHHHHHHHHhC
Confidence 99999999998877743
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=117.07 Aligned_cols=165 Identities=21% Similarity=0.194 Sum_probs=101.6
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch---H---------
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL---R--------- 82 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---~--------- 82 (204)
.+.++|+++|.||+|||||.|.+.+.... ....+...|..-..+.+.....++.++||||...- +
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~---~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVS---AVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccc---cccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 45689999999999999999999654322 11222222222233445567789999999992111 1
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC-----------------HHH
Q 028776 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-----------------ADE 145 (204)
Q Consensus 83 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------------~~~ 145 (204)
..-...+..+|.+++++|+++...... ...+..+-.+ ..+|-|+|+||.|...... ..+
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 111234567999999999996432211 1222222222 4689999999999876211 112
Q ss_pred HHHHhCcc-----ccccc----eeEEEeecccCCCChHHHHHHHHHHHHh
Q 028776 146 LARYLDLK-----KLDER----VCMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 146 ~~~~~~~~-----~~~~~----~~~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
+++..... +.... --.++.+||..|+|++++.++|....+.
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 22222110 00111 2248899999999999999999987753
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.5e-16 Score=122.04 Aligned_cols=161 Identities=21% Similarity=0.242 Sum_probs=111.4
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
++.+-|-|+|+...|||||+..|.+.- ......--+...++.-...++ .+..+++.|||||..|..+........|.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~--VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSS--VAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCc--eehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence 467889999999999999999995421 111222222233332222233 56789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccc----ccceeEEEeecccCC
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL----DERVCMFEAVSGYDG 170 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~ 170 (204)
+|+|+.++|.- +.+....+ .+....+.|+|+.+||+|..... .+.+...+..... --.+.+++++||++|
T Consensus 228 vVLVVAadDGV----mpQT~EaI-khAk~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 228 VVLVVAADDGV----MPQTLEAI-KHAKSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEEEccCCc----cHhHHHHH-HHHHhcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 99999999863 22222222 22222679999999999987643 3444443321111 136788999999999
Q ss_pred CChHHHHHHHHHHH
Q 028776 171 FGIKESVEWLVEVM 184 (204)
Q Consensus 171 ~~v~~l~~~i~~~i 184 (204)
.|++.|-+.+.-..
T Consensus 302 ~nl~~L~eaill~A 315 (683)
T KOG1145|consen 302 ENLDLLEEAILLLA 315 (683)
T ss_pred CChHHHHHHHHHHH
Confidence 99999988876544
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=128.68 Aligned_cols=122 Identities=20% Similarity=0.114 Sum_probs=87.0
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCC--CCC------C------ccccccceeeeEEEEeCcEEEEEEcCCCc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPP------D------RIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~------~------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 79 (204)
..+..+|+|+|++++|||||+++|+........ ... + .-..++......+.+.+.++.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 445679999999999999999999643322110 000 0 11234444455677788999999999999
Q ss_pred chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 140 (204)
++...+...++.+|++++|+|+.+..... ....+..+.. .++|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQ-SETVWRQANR----YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 88888888899999999999998764432 2333333322 36899999999999863
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=129.00 Aligned_cols=121 Identities=18% Similarity=0.114 Sum_probs=85.8
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCC--CCC------------CccccccceeeeEEEEeCcEEEEEEcCCCc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPP------------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 79 (204)
..+..+|+++|+.++|||||+++|+........ ... ..-..++......+.+++.++.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 446679999999999999999999653221100 000 011234444455577788999999999999
Q ss_pred chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
++...+...++.+|++++|+|+.++..- +....+..... .++|+|+++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~-qt~~i~~~~~~----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEP-QSETVWRQADK----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 8888888899999999999999876322 22233333322 3689999999999975
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=101.89 Aligned_cols=107 Identities=24% Similarity=0.362 Sum_probs=69.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch---------HHHHHHhc
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL---------RSIWEKYY 89 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 89 (204)
+|+|+|.+|+|||||+++|++.... ........|....+..+......+.++||||.... .......+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~---~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA---KVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS---EESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccc---cccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 6899999999999999999863211 11111223333344556678888999999995321 11233344
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeC
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 134 (204)
..+|++++|+|++++.. ......+..+ . .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 78999999999877321 2223333333 2 47999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-15 Score=126.20 Aligned_cols=121 Identities=17% Similarity=0.067 Sum_probs=84.1
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCC--CCC------------CccccccceeeeEEEEeCcEEEEEEcCCCc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPP------------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 79 (204)
..+..+|+|+|++++|||||+++|+........ ... ..-..++......+.+.+.++.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 445679999999999999999999642221100 000 011123333344566778899999999999
Q ss_pred chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
++.......+..+|++++|+|+...-.. +....+..+.. .++|.|+++||+|+..
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~-qt~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEP-QSETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcch-hhHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 8888888888999999999998865322 22333333333 3689999999999975
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=116.41 Aligned_cols=163 Identities=21% Similarity=0.275 Sum_probs=100.7
Q ss_pred EEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEE--------------------EEeCcEEEEEEcCCC-
Q 028776 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--------------------EVSNSKLVFWDLGGQ- 78 (204)
Q Consensus 20 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~D~~g~- 78 (204)
|+++|.+|+|||||++++++...........++.++.+..+... ....+.+.+|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 58999999999999999987544333333444455555433211 013467999999996
Q ss_pred ---cchHH---HHHHhcccCCEEEEEEeCCCC-------------CC---HHH----HHHH-------------------
Q 028776 79 ---PGLRS---IWEKYYEEAHAVVFVIDAACP-------------SR---FED----SKTA------------------- 113 (204)
Q Consensus 79 ---~~~~~---~~~~~~~~~d~ii~v~d~~~~-------------~s---~~~----~~~~------------------- 113 (204)
..... .....++++|++++|+|+... +. ++. +..|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22322 334458999999999999731 10 111 1111
Q ss_pred ---------------------HHHHHhc-C--------------------CCCCCeEEEEEeCCCCCCccCHHHHHHHhC
Q 028776 114 ---------------------LEKVLRN-E--------------------DLQGAPLLILANKQDLPDAVSADELARYLD 151 (204)
Q Consensus 114 ---------------------~~~~~~~-~--------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 151 (204)
+..++.. . ....+|+|+|+||+|+... ++....+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence 0000000 0 0234699999999997543 22222222
Q ss_pred ccccccceeEEEeecccCCCChHHHHH-HHHHHHHhch
Q 028776 152 LKKLDERVCMFEAVSGYDGFGIKESVE-WLVEVMERSK 188 (204)
Q Consensus 152 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~-~i~~~i~~~~ 188 (204)
. ......++++||+.+.+++++.+ .+.+.+++..
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 1 12245789999999999999998 6999886544
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-15 Score=108.77 Aligned_cols=160 Identities=13% Similarity=0.066 Sum_probs=97.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch-------HHHH----H
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIW----E 86 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~----~ 86 (204)
++|+++|.+|+|||||+|++++......... ....|..+..+.....+..+.++||||-.+. ...+ .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~--~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS--ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC--CCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 4799999999999999999986533211111 1223444445555667889999999994322 1111 1
Q ss_pred HhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCC-CCCeEEEEEeCCCCCCccCHHHH--------HHHhCcccccc
Q 028776 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPDAVSADEL--------ARYLDLKKLDE 157 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~--------~~~~~~~~~~~ 157 (204)
....++|++++|+++.+. + ......+..+....+. .-.++++++|+.|.......++. +..+. .
T Consensus 79 ~~~~g~~~illVi~~~~~-t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~-----~ 151 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRF-T-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLE-----K 151 (196)
T ss_pred hcCCCCEEEEEEEECCCc-C-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHH-----H
Confidence 223578999999999872 2 1222333333332221 12689999999998764433322 22222 1
Q ss_pred ceeEEEee-----cccCCCChHHHHHHHHHHHHh
Q 028776 158 RVCMFEAV-----SGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 158 ~~~~~~~~-----Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
.+-.++.. ++..+.++++|++.|.+.+.+
T Consensus 152 c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 152 CGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 22223333 356678899999999998876
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=118.94 Aligned_cols=166 Identities=22% Similarity=0.238 Sum_probs=108.8
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHH----hhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc-h------
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLK----SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-L------ 81 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~------ 81 (204)
..++.++|+|+|.||+|||||+|.|. ..+++..+.+++.+.. .++.++.++.+.||+|... -
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea-------~v~~~G~~v~L~DTAGiRe~~~~~iE~ 336 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEA-------QVTVNGVPVRLSDTAGIREESNDGIEA 336 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhhee-------EeecCCeEEEEEeccccccccCChhHH
Confidence 35677999999999999999999994 4455566666655543 3567899999999999544 1
Q ss_pred --HHHHHHhcccCCEEEEEEeCC--CCCCHHHHHHHHHHHHhc-----CCCCCCeEEEEEeCCCCCCccC--HHHHHHHh
Q 028776 82 --RSIWEKYYEEAHAVVFVIDAA--CPSRFEDSKTALEKVLRN-----EDLQGAPLLILANKQDLPDAVS--ADELARYL 150 (204)
Q Consensus 82 --~~~~~~~~~~~d~ii~v~d~~--~~~s~~~~~~~~~~~~~~-----~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~ 150 (204)
-......+..+|++++|+|+. +-++-..+...+...-.. ..+.+.|+|+++||+|+..... ......+.
T Consensus 337 ~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~ 416 (531)
T KOG1191|consen 337 LGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYP 416 (531)
T ss_pred HhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecc
Confidence 112233457799999999994 333333333444433221 1224579999999999977422 11122222
Q ss_pred CccccccceeEEEeecccCCCChHHHHHHHHHHHHh
Q 028776 151 DLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 151 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
.. ..........++|+++++|+++|...+.+.+..
T Consensus 417 ~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 417 SA-EGRSVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred cc-ccCcccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 21 111222334559999999999999998877753
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.5e-15 Score=120.14 Aligned_cols=112 Identities=23% Similarity=0.232 Sum_probs=76.0
Q ss_pred cEEEEEEcCCCcc-----hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC
Q 028776 68 SKLVFWDLGGQPG-----LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS 142 (204)
Q Consensus 68 ~~~~~~D~~g~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 142 (204)
.++.++||||... ....+...+..+|+|++|+|+.+.-+..+ ..+...+...+ ...|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 5788999999543 23345567899999999999987544333 22233333321 2359999999999965222
Q ss_pred --HHHHHHHhCcc--ccccceeEEEeecccCCCChHHHHHHHHH
Q 028776 143 --ADELARYLDLK--KLDERVCMFEAVSGYDGFGIKESVEWLVE 182 (204)
Q Consensus 143 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 182 (204)
.+.+...+... ........++++||+.|.|++++++.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 55555554311 11223456999999999999999999987
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-16 Score=121.10 Aligned_cols=165 Identities=19% Similarity=0.196 Sum_probs=114.0
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCc-------c----ccccceeeeEEEE-----eCcEEEEEEcCC
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-------I----VPTVGLNIGRIEV-----SNSKLVFWDLGG 77 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~-----~~~~~~~~D~~g 77 (204)
.++--+..++.+-..|||||..++.........+.... + ..|+......+.+ +...++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 34456778999999999999999965444333211111 1 1222222222222 446789999999
Q ss_pred CcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC---HHHHHHHhCccc
Q 028776 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKK 154 (204)
Q Consensus 78 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~ 154 (204)
|-+|.-.....+..|-+.++|+|++++-.-..+...+..+- .+.-+|.|+||+||..... .+++.+.++
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iG--- 157 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIG--- 157 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhC---
Confidence 99998777777888999999999998732223333333332 3688999999999986332 455555554
Q ss_pred cccceeEEEeecccCCCChHHHHHHHHHHHHhch
Q 028776 155 LDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 155 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~ 188 (204)
......+.+|||+|.|++++++.|++.++...
T Consensus 158 --id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 158 --IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred --CCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 44455788999999999999999999997654
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-18 Score=116.28 Aligned_cols=164 Identities=22% Similarity=0.326 Sum_probs=121.6
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee--EEE---EeCcEEEEEEcCCCcchHHHHHHhc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE---VSNSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
..-+++.|+|..|+|||+++.++... .....++.+++..+- ... ..-++..+||..|++.++.+..-++
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~------nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyy 96 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQ------NFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYY 96 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHH------HHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEe
Confidence 45589999999999999999998431 122233334443322 112 2345788999999999999999999
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCC---CCCeEEEEEeCCCCCCccC---HHHHHHHhCccccccceeEEE
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL---QGAPLLILANKQDLPDAVS---ADELARYLDLKKLDERVCMFE 163 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~ 163 (204)
+.+++..+|+|+++.-.|+....|...+-....+ .-+|+++..||||...... ...+..+-+ ...-.-++
T Consensus 97 kea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k----engf~gwt 172 (229)
T KOG4423|consen 97 KEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK----ENGFEGWT 172 (229)
T ss_pred cCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh----ccCcccee
Confidence 9999999999999999999999999888554333 3479999999999866221 233333333 12233589
Q ss_pred eecccCCCChHHHHHHHHHHHHhch
Q 028776 164 AVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 164 ~~Sa~~~~~v~~l~~~i~~~i~~~~ 188 (204)
++|+|.+.|++|.-+.+++++.-..
T Consensus 173 ets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 173 ETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred eeccccccChhHHHHHHHHHHHhhc
Confidence 9999999999999999999986544
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=9e-15 Score=113.56 Aligned_cols=135 Identities=19% Similarity=0.355 Sum_probs=103.4
Q ss_pred cccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCC----------CCHHHHHHHHHHHHhcCCC
Q 028776 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALEKVLRNEDL 123 (204)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 123 (204)
+|.++....+.+++..+.+||++|+...+..|.+++.+++++++|+|+++- ..+.+....+..++.....
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 455665666777888999999999999999999999999999999999863 3456667777788877666
Q ss_pred CCCeEEEEEeCCCCCC------------------ccCHHHHHHHhCcccc-----ccceeEEEeecccCCCChHHHHHHH
Q 028776 124 QGAPLLILANKQDLPD------------------AVSADELARYLDLKKL-----DERVCMFEAVSGYDGFGIKESVEWL 180 (204)
Q Consensus 124 ~~~p~ivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~i 180 (204)
.+.|+++++||.|+.. ..+.+++..++...+. ....+.++.++|.+..+++.+|+.+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 7899999999999754 1223444444432111 1245667789999999999999999
Q ss_pred HHHHHhch
Q 028776 181 VEVMERSK 188 (204)
Q Consensus 181 ~~~i~~~~ 188 (204)
.+.+....
T Consensus 307 ~~~i~~~~ 314 (317)
T cd00066 307 KDIILQNN 314 (317)
T ss_pred HHHHHHHH
Confidence 99887654
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=112.05 Aligned_cols=173 Identities=17% Similarity=0.142 Sum_probs=119.4
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcc------------ccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI------------VPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
+.+++.+|..+|+...|||||..+++.............| ..|+...-.+++.....+..+|+||+.+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 6789999999999999999999999655443222111111 2233333344556778999999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC-----HHHHHHHhCcccc
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-----ADELARYLDLKKL 155 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~~ 155 (204)
|-+.+.....++|+.|+|+.+.+.- +.+...+++....-.-..+++++||+|+.+..+ ..++.+.+.+..+
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGp----mPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGP----MPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCC----CCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 9998888889999999999998752 333334444332212346778889999987332 4566666666666
Q ss_pred ccceeEEEeecccCCC--------ChHHHHHHHHHHHHhchh
Q 028776 156 DERVCMFEAVSGYDGF--------GIKESVEWLVEVMERSKR 189 (204)
Q Consensus 156 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~i~~~~~ 189 (204)
.-...|++.-||..-- .+.+|++.+.++++...+
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per 205 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER 205 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC
Confidence 6678888887776532 367777777777755443
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=113.04 Aligned_cols=136 Identities=18% Similarity=0.327 Sum_probs=104.3
Q ss_pred cccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCC----------CCHHHHHHHHHHHHhcCCC
Q 028776 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALEKVLRNEDL 123 (204)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 123 (204)
+|.++....+..++..+.+||.+|+...++.|.+++.+++++++|+|+++- ..+.+....+..++.....
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 455666666777888999999999999999999999999999999999963 3466777778888877666
Q ss_pred CCCeEEEEEeCCCCCCc-----------------cCHHHHHHHhCcccc------ccceeEEEeecccCCCChHHHHHHH
Q 028776 124 QGAPLLILANKQDLPDA-----------------VSADELARYLDLKKL------DERVCMFEAVSGYDGFGIKESVEWL 180 (204)
Q Consensus 124 ~~~p~ivv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~~l~~~i 180 (204)
.+.|+++++||.|+..+ .+.+++..++...+. ....+.++.++|.+-.++..+|+.+
T Consensus 250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v 329 (342)
T smart00275 250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV 329 (342)
T ss_pred cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence 78999999999999651 123334443331111 1245677889999999999999999
Q ss_pred HHHHHhchh
Q 028776 181 VEVMERSKR 189 (204)
Q Consensus 181 ~~~i~~~~~ 189 (204)
.+.+.+...
T Consensus 330 ~~~I~~~~l 338 (342)
T smart00275 330 KDIILQRNL 338 (342)
T ss_pred HHHHHHHHH
Confidence 998876654
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-14 Score=121.62 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=79.3
Q ss_pred EcCCCCChHHHHHHHHhhccCCCC--------CCCC------ccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHh
Q 028776 23 LGIDKAGKTTLLEKLKSVYSNVEG--------LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKY 88 (204)
Q Consensus 23 ~G~~~~GKStli~~l~~~~~~~~~--------~~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 88 (204)
+|+.++|||||+++|......... ...+ .-..++......+.+.+..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999543321111 0000 11234444455677788999999999999888888888
Q ss_pred cccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 89 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
+..+|++++|+|+.+....... ..+..... .++|+++|+||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCC
Confidence 9999999999999887554332 33333322 3689999999999875
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-16 Score=115.10 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=119.8
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCC------------CCCcccccccee----ee---EEEE------eCc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------------PPDRIVPTVGLN----IG---RIEV------SNS 68 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~------------~~~~~~~~~~~~----~~---~~~~------~~~ 68 (204)
.....+|..+|+...|||||..+|++.-...... ....++.=..+. +. ..+. --.
T Consensus 7 ~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 7 IQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence 3678999999999999999999996543322211 111110000000 00 0000 123
Q ss_pred EEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc----cCHH
Q 028776 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----VSAD 144 (204)
Q Consensus 69 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~ 144 (204)
.+.++|.|||+-....+.+...-+|++++|++++.+..-.+..+.+..+--. .-..+|+|-||+|+... .+.+
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence 6899999999999988888888899999999999876555555554443222 34689999999999873 3455
Q ss_pred HHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHHHHhchhHHH
Q 028776 145 ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTEM 192 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~~~~~ 192 (204)
+++++++-.. ..+.|++++||..+.|++-+++.|.+.++.......
T Consensus 164 qIk~FvkGt~--Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~ 209 (415)
T COG5257 164 QIKEFVKGTV--AENAPIIPISAQHKANIDALIEAIEKYIPTPERDLD 209 (415)
T ss_pred HHHHHhcccc--cCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCC
Confidence 6666665222 356789999999999999999999999977665433
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=114.41 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=55.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEE--------------------EeCcEEEEEEcCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--------------------VSNSKLVFWDLGG 77 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~D~~g 77 (204)
++|+++|.+|+|||||+++|++...........+..++.+....... .....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999865433323333333444443221000 2235789999999
Q ss_pred Cc----c---hHHHHHHhcccCCEEEEEEeCC
Q 028776 78 QP----G---LRSIWEKYYEEAHAVVFVIDAA 102 (204)
Q Consensus 78 ~~----~---~~~~~~~~~~~~d~ii~v~d~~ 102 (204)
.. . ........++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 2 2234444578999999999996
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.4e-15 Score=110.95 Aligned_cols=116 Identities=24% Similarity=0.217 Sum_probs=75.0
Q ss_pred cEEEEEEcCCCcchH---HHHHHh---ccc--CCEEEEEEeCCCCCCHHHHH-HHHHH-HHhcCCCCCCeEEEEEeCCCC
Q 028776 68 SKLVFWDLGGQPGLR---SIWEKY---YEE--AHAVVFVIDAACPSRFEDSK-TALEK-VLRNEDLQGAPLLILANKQDL 137 (204)
Q Consensus 68 ~~~~~~D~~g~~~~~---~~~~~~---~~~--~d~ii~v~d~~~~~s~~~~~-~~~~~-~~~~~~~~~~p~ivv~nK~Dl 137 (204)
..+.+||+||+.... ..+..+ +.. .+++++++|+.......... .++.. ..... .++|+++|+||+|+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~ 174 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADL 174 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhh
Confidence 479999999975542 222222 222 89999999997654332222 22212 11111 36899999999999
Q ss_pred CCccCHHHHHHHhCc------c-------------------ccccceeEEEeecccCCCChHHHHHHHHHHHH
Q 028776 138 PDAVSADELARYLDL------K-------------------KLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 138 ~~~~~~~~~~~~~~~------~-------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
......++....+.. . .......+++++|++++.|+++++++|.+.+.
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 876555555554441 0 00012357899999999999999999988774
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=110.69 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=108.0
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhh------------ccCC--CCCC---------------CCccccccceeeeEEE
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSV------------YSNV--EGLP---------------PDRIVPTVGLNIGRIE 64 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~------------~~~~--~~~~---------------~~~~~~~~~~~~~~~~ 64 (204)
.++.++.+-+|...-||||||.+|+.- .... .+.. ..+...|+.+.+..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 356789999999999999999999311 1111 1111 1112456777677777
Q ss_pred EeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHH--HHHHHHHhcCCCCCCeEEEEEeCCCCCC--c
Q 028776 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK--TALEKVLRNEDLQGAPLLILANKQDLPD--A 140 (204)
Q Consensus 65 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~ 140 (204)
.+..+|.+.|||||+.|.+.+......||+.|+++|+...- .++.. ..+..++ .-+.+++.+||+||.+ +
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCH
Confidence 78889999999999999999999999999999999997541 11211 1222222 3478999999999987 4
Q ss_pred cCHHHHHHHhCc--cccccceeEEEeecccCCCChH
Q 028776 141 VSADELARYLDL--KKLDERVCMFEAVSGYDGFGIK 174 (204)
Q Consensus 141 ~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~ 174 (204)
..++++...+.. ..+......++++||..|.||-
T Consensus 157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 445565555542 2223445589999999998864
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-14 Score=104.88 Aligned_cols=167 Identities=22% Similarity=0.282 Sum_probs=107.4
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc-------hHHHHH
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWE 86 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~ 86 (204)
.....+|+++|.+|+||||+||+|.......-........++ ......++.-.+.+||+||-.+ +.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~---~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDIT---TRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCch---hhHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence 457899999999999999999999631110000000000111 1112335556789999999433 555667
Q ss_pred HhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC---------HHHHHHHhCc-----
Q 028776 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---------ADELARYLDL----- 152 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~----- 152 (204)
.++...|.+++++++.+++- .-....+++++... .+.|+++++|++|...+.. ...+..++.+
T Consensus 113 d~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HHhhhccEEEEeccCCCccc-cCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 77888999999999998742 22235556666554 3589999999999976420 1111111110
Q ss_pred cccccceeEEEeecccCCCChHHHHHHHHHHHHh
Q 028776 153 KKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 153 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
......--|++..+.+.+.|++++...+++.+..
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 0011235578888889999999999999998863
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=112.92 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=114.7
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCC--CCCCCC------ccccccceeee----EEEEeCcEEEEEEcCCCcchHH
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNV--EGLPPD------RIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRS 83 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~--~~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~ 83 (204)
+--+|+|+.+...|||||+..|+..-... .....+ .....-+++.. -+.+++.+++++|||||++|+.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34589999999999999999995311100 000011 11122222221 2667889999999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCH---HHHHHHhCcc--ccccc
Q 028776 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---DELARYLDLK--KLDER 158 (204)
Q Consensus 84 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~--~~~~~ 158 (204)
..+..+.=.|++++++|+.+.- ..+....+...+.. +.+.|+|+||+|....... +++.+.+-.. .-...
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 9999999999999999998642 23344444444443 6788999999999874443 3333332211 12346
Q ss_pred eeEEEeecccCC----------CChHHHHHHHHHHHHhch
Q 028776 159 VCMFEAVSGYDG----------FGIKESVEWLVEVMERSK 188 (204)
Q Consensus 159 ~~~~~~~Sa~~~----------~~v~~l~~~i~~~i~~~~ 188 (204)
.+|++..|++.| .++..||+.|.+.++...
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 789999999987 478999999999886554
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-14 Score=104.42 Aligned_cols=173 Identities=22% Similarity=0.246 Sum_probs=105.5
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCC----------------CCCCcccccccee-----------eeE----
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------------LPPDRIVPTVGLN-----------IGR---- 62 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------------~~~~~~~~~~~~~-----------~~~---- 62 (204)
.++..-|+++|+.|||||||+.+|......... ..+..++.++.+. .+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 456788999999999999999999533322111 1111122222111 000
Q ss_pred ---------------EEEeCcEEEEEEcCCCcch------HHH-HHHhc-ccCCEEEEEEeCCC---CCCHHHHHHHHHH
Q 028776 63 ---------------IEVSNSKLVFWDLGGQPGL------RSI-WEKYY-EEAHAVVFVIDAAC---PSRFEDSKTALEK 116 (204)
Q Consensus 63 ---------------~~~~~~~~~~~D~~g~~~~------~~~-~~~~~-~~~d~ii~v~d~~~---~~s~~~~~~~~~~ 116 (204)
-..+..++.++|||||... +.. ...+. ...-++++++|..+ |..|-----+...
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 0013456899999996432 111 22221 23568889999864 4445332334445
Q ss_pred HHhcCCCCCCeEEEEEeCCCCCCcc-------CHHHHHHHhCccc----------------cccceeEEEeecccCCCCh
Q 028776 117 VLRNEDLQGAPLLILANKQDLPDAV-------SADELARYLDLKK----------------LDERVCMFEAVSGYDGFGI 173 (204)
Q Consensus 117 ~~~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~~~----------------~~~~~~~~~~~Sa~~~~~v 173 (204)
++.. .+.|+|+|+||+|+.+.. +++..++-++... .....+..+.+|+.+|.|+
T Consensus 176 ilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 176 ILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 5554 579999999999998732 2333333333100 0235678899999999999
Q ss_pred HHHHHHHHHHHHhchh
Q 028776 174 KESVEWLVEVMERSKR 189 (204)
Q Consensus 174 ~~l~~~i~~~i~~~~~ 189 (204)
+++|..+.+.+.+...
T Consensus 253 ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 253 DDFFTAVDESVDEYEE 268 (366)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998866544
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-15 Score=110.66 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=60.7
Q ss_pred EEEEEEcCCCcchHHHHHHhc--------ccCCEEEEEEeCCCCCCHHH-HHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 69 KLVFWDLGGQPGLRSIWEKYY--------EEAHAVVFVIDAACPSRFED-SKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 69 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
.+.++|||||.++...+...- ...-++++++|+....+... +...+....... ..+.|.|.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-RLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-HHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-hCCCCEEEeeeccCccc
Confidence 799999999987766554433 34568999999985544222 222222211110 03689999999999987
Q ss_pred ccC---------H-----------HHHHHHhCcccccccee-EEEeecccCCCChHHHHHHHHHHHH
Q 028776 140 AVS---------A-----------DELARYLDLKKLDERVC-MFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 140 ~~~---------~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
... . ......+.......... +++++|+.+++++++++..|.+++.
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 221 0 11111111111112233 7999999999999999999988763
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=93.53 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=96.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCC----CcchHHHHHHhcccCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----QPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~d 93 (204)
-|++++|..|+|||||.+.+.+.... +..|..+ ++.+ =-.+|||| +..+..........+|
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l--------ykKTQAv-----e~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dad 66 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL--------YKKTQAV-----EFND--KGDIDTPGEYFEHPRWYHALITTLQDAD 66 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh--------hccccee-----eccC--ccccCCchhhhhhhHHHHHHHHHhhccc
Confidence 37999999999999999999553221 1222222 2211 12679999 4555555555667899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCCh
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 173 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 173 (204)
.+++|-.++++++-... .+... ..+|+|-|++|.|+.+..+.....+++.+.. .-+++++|+.++.|+
T Consensus 67 vi~~v~~and~~s~f~p-----~f~~~---~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv 134 (148)
T COG4917 67 VIIYVHAANDPESRFPP-----GFLDI---GVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGV 134 (148)
T ss_pred eeeeeecccCccccCCc-----ccccc---cccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccH
Confidence 99999999998653211 11111 3467999999999998777777777775333 457899999999999
Q ss_pred HHHHHHHHH
Q 028776 174 KESVEWLVE 182 (204)
Q Consensus 174 ~~l~~~i~~ 182 (204)
++++..+..
T Consensus 135 ~~l~~~L~~ 143 (148)
T COG4917 135 EELVDYLAS 143 (148)
T ss_pred HHHHHHHHh
Confidence 999988764
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=112.72 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=123.2
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch----HH----HH
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----RS----IW 85 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~----~~ 85 (204)
..+..+++++|.|++|||||++.++......+++.. +|.+.-.+.+.+.-..++++||||.-+. .+ +.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaF----TTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAF----TTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCccc----ccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence 357789999999999999999998765555444433 3334444556677778899999993111 11 11
Q ss_pred HHhccc-CCEEEEEEeCCC--CCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEE
Q 028776 86 EKYYEE-AHAVVFVIDAAC--PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF 162 (204)
Q Consensus 86 ~~~~~~-~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (204)
...+.+ --+++|++|++. +.|.++....+..+-... .+.|.|+|+||+|+....+..+-.+.+-........+++
T Consensus 241 ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v 318 (620)
T KOG1490|consen 241 ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKV 318 (620)
T ss_pred HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceE
Confidence 122222 358899999984 557777777777775544 589999999999998755544333332222223455889
Q ss_pred EeecccCCCChHHHHHHHHHHHHhchhHHHHHhh
Q 028776 163 EAVSGYDGFGIKESVEWLVEVMERSKRTEMLRAR 196 (204)
Q Consensus 163 ~~~Sa~~~~~v~~l~~~i~~~i~~~~~~~~~~~~ 196 (204)
+.+|+...+||.++....++.+...+-.+.+...
T Consensus 319 ~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~ 352 (620)
T KOG1490|consen 319 VQTSCVQEEGVMDVRTTACEALLAARVEQKLKSE 352 (620)
T ss_pred EEecccchhceeeHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999988877776665543
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.8e-15 Score=117.65 Aligned_cols=162 Identities=20% Similarity=0.252 Sum_probs=109.1
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcc-------------------------ccccceeee--EEEE
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-------------------------VPTVGLNIG--RIEV 65 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-------------------------~~~~~~~~~--~~~~ 65 (204)
....+++++++|+..+|||||+.+++...........+.+ ..-+.+... .++-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3457899999999999999999998433322221100000 111112222 2334
Q ss_pred eCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCC---CHHHHH--HHHHHHHhcCCCCCCeEEEEEeCCCCCC-
Q 028776 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---RFEDSK--TALEKVLRNEDLQGAPLLILANKQDLPD- 139 (204)
Q Consensus 66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~--~~~~~~~~~~~~~~~p~ivv~nK~Dl~~- 139 (204)
....++++|+||+.+|-.-+......+|+.++|+|++..+ .|+... .....+++.. .-..+||++||+|+.+
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVSW 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccCc
Confidence 5667899999999999888888889999999999998542 333211 2223334443 3568999999999987
Q ss_pred -ccCHHHHHHHhC-----ccccccceeEEEeecccCCCChHHH
Q 028776 140 -AVSADELARYLD-----LKKLDERVCMFEAVSGYDGFGIKES 176 (204)
Q Consensus 140 -~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~l 176 (204)
...+++++..++ ...+....+.|++||+..|+|+-..
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 666777776665 2334456778999999999987543
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=105.65 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=69.3
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCC----CCCccccccceeee--EEEEeC--cEEEEEEcCCCcchH---HH
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLR---SI 84 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~--~~~~~~D~~g~~~~~---~~ 84 (204)
-.++|+++|.+|+|||||+++|++........ ......++...... .+..++ .++.+|||||..+.. ..
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 46899999999999999999996543221111 11123344433332 233333 579999999932210 00
Q ss_pred H------------------H-----Hhcc--cCCEEEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCeEEEEEeCCCCC
Q 028776 85 W------------------E-----KYYE--EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 85 ~------------------~-----~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 138 (204)
+ . ..+. .+|+++++++..... .... ...+..+. ..+|+|+|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence 0 0 1111 378888888876522 1122 22233332 258999999999997
Q ss_pred Cc
Q 028776 139 DA 140 (204)
Q Consensus 139 ~~ 140 (204)
..
T Consensus 157 ~~ 158 (276)
T cd01850 157 TP 158 (276)
T ss_pred CH
Confidence 63
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=105.76 Aligned_cols=165 Identities=17% Similarity=0.141 Sum_probs=98.3
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCC---------CCC--------C--ccc--cccceeeeE----------
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG---------LPP--------D--RIV--PTVGLNIGR---------- 62 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~---------~~~--------~--~~~--~~~~~~~~~---------- 62 (204)
..+.+.|.|.|++|+|||||+..+......... ... + ... ...+..+..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 467789999999999999999998433321110 000 0 000 000000111
Q ss_pred -----------EEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEE
Q 028776 63 -----------IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131 (204)
Q Consensus 63 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 131 (204)
....+..+.++||+|...-... ....+|.++++.+...++...... ..++ ...-|+|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~------E~aDIiV 200 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIM------ELADLIV 200 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhh------hhhheEE
Confidence 1123578999999997633322 456699999998755443332222 1122 2234899
Q ss_pred EeCCCCCCccCHH----HHHHHhCccccc--cceeEEEeecccCCCChHHHHHHHHHHHHhchhH
Q 028776 132 ANKQDLPDAVSAD----ELARYLDLKKLD--ERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRT 190 (204)
Q Consensus 132 ~nK~Dl~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~~~ 190 (204)
+||+|+......+ ++...+...... ....|++.+||+++.|++++++.|.+.+......
T Consensus 201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~s 265 (332)
T PRK09435 201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTAS 265 (332)
T ss_pred eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccC
Confidence 9999998644333 333333321111 1235799999999999999999999987644443
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=117.53 Aligned_cols=148 Identities=24% Similarity=0.275 Sum_probs=91.9
Q ss_pred CChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe------------------CcEEEEEEcCCCcchHHHHHHhc
Q 028776 28 AGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS------------------NSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 28 ~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
++||||+..+++.... .....-+...++. ..++.+ -..+.+|||||++.+.......+
T Consensus 472 ~~KTtLLD~iR~t~v~--~~EaGGITQ~IGa--~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~ 547 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVA--KKEAGGITQHIGA--TEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGG 547 (1049)
T ss_pred cccccHHHHHhCCCcc--cccCCCceeccce--EEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhc
Confidence 3499999999764332 2222223333333 223222 12389999999999988888788
Q ss_pred ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC------------------HHHHHHH--
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS------------------ADELARY-- 149 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------------~~~~~~~-- 149 (204)
..+|++++|+|+++.-. .+....+. .+.. .++|+|+|+||+|+..... .+++...
T Consensus 548 ~~aDivlLVVDa~~Gi~-~qT~e~I~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~ 622 (1049)
T PRK14845 548 SLADLAVLVVDINEGFK-PQTIEAIN-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLY 622 (1049)
T ss_pred ccCCEEEEEEECcccCC-HhHHHHHH-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 88999999999986421 11122222 2222 3589999999999964111 1111111
Q ss_pred -----hCcccc----------ccceeEEEeecccCCCChHHHHHHHHHHH
Q 028776 150 -----LDLKKL----------DERVCMFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 150 -----~~~~~~----------~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
+....+ .....+++++||++|+|+++|+..|....
T Consensus 623 ~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 623 ELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 111111 12467899999999999999998876544
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-13 Score=113.95 Aligned_cols=120 Identities=17% Similarity=0.110 Sum_probs=78.9
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCC----------CCccc--cccceeeeEEE----EeCcEEEEEEcCCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDRIV--PTVGLNIGRIE----VSNSKLVFWDLGGQ 78 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~----~~~~~~~~~D~~g~ 78 (204)
.+..+|+++|+.++|||||+.+|+.......... ..+.. .++......+. .++..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4556899999999999999999964332111100 00000 11111111122 24677899999999
Q ss_pred cchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 79 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
.++.......++.+|++++|+|+...-. .+....+...... +.|.|+++||+|+..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~-~~t~~~~~~~~~~----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVM-PQTETVLRQALRE----RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCC-ccHHHHHHHHHHc----CCCeEEEEECchhhc
Confidence 9998888899999999999999986532 2233344433332 467899999999863
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-13 Score=114.58 Aligned_cols=120 Identities=17% Similarity=0.101 Sum_probs=80.0
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCC----------CCCCCc--cccccceee----eEEEEeCcEEEEEEcCCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPDR--IVPTVGLNI----GRIEVSNSKLVFWDLGGQ 78 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~D~~g~ 78 (204)
....+|+++|+.++|||||+++|+....... ...... ...|+.... ....+.+.++.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 4567999999999999999999964321100 000000 111222211 124456788999999999
Q ss_pred cchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 79 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
.++.......++.+|++++|+|+.+.... .....+..... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~-~t~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMP-QTETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCc-cHHHHHHHHHH----cCCCEEEEEEChhccc
Confidence 99988888899999999999999864321 12222333222 3578899999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=100.26 Aligned_cols=166 Identities=15% Similarity=0.134 Sum_probs=94.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcc-------hHHHHH----
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWE---- 86 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~---- 86 (204)
++|+++|.+|+||||++|.+++......+.... ..+..+.......++..+.++||||-.+ ....+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~--~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAK--SVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTS--S--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccC--CcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999998755432222111 2234445555677889999999999321 111121
Q ss_pred HhcccCCEEEEEEeCCCCCC-HHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHH-----HhCcccccccee
Q 028776 87 KYYEEAHAVVFVIDAACPSR-FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELAR-----YLDLKKLDERVC 160 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~ 160 (204)
....+.|++++|+..++... -.....++..++... --..+|||+|..|.......++... .+.. .....+-
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~-li~~c~~ 155 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQE-LIEKCGG 155 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHH-HHHHTTT
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhH-HhhhcCC
Confidence 22356899999999983211 112223333333221 1257999999999877655332222 1110 1112333
Q ss_pred EEEeeccc------CCCChHHHHHHHHHHHHhch
Q 028776 161 MFEAVSGY------DGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 161 ~~~~~Sa~------~~~~v~~l~~~i~~~i~~~~ 188 (204)
+++..+.+ ....+.+|++.|.+.+.+..
T Consensus 156 R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 156 RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 45555544 33568889999988887654
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.49 E-value=7e-13 Score=103.56 Aligned_cols=171 Identities=17% Similarity=0.205 Sum_probs=89.2
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcc-ccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHH-----
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEK----- 87 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~----- 87 (204)
....++|+|+|.+|+|||||||+|++.-....+...... ..|....-+ ......++.+||.||..........
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y-~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY-PHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE-E-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC-CCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 457799999999999999999999876544444333322 222222222 1223457999999995332222222
Q ss_pred hcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC-C--------ccC----HHHHHHHhC--c
Q 028776 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP-D--------AVS----ADELARYLD--L 152 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~--------~~~----~~~~~~~~~--~ 152 (204)
.+...|.+|++.+.. |....-++...+.. .++|+.+|-||+|.. . ..+ .+++++... .
T Consensus 111 ~~~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 346689888876643 54444444444444 478999999999961 1 111 122222221 1
Q ss_pred cccccceeEEEeecccCCC--ChHHHHHHHHHHHHhchhHHH
Q 028776 153 KKLDERVCMFEAVSGYDGF--GIKESVEWLVEVMERSKRTEM 192 (204)
Q Consensus 153 ~~~~~~~~~~~~~Sa~~~~--~v~~l~~~i~~~i~~~~~~~~ 192 (204)
........+++-+|+.+-. ++..|.+.+.+.+..++++..
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~f 225 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAF 225 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHH
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHH
Confidence 1122355678888888754 588888888888877776543
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.5e-13 Score=97.63 Aligned_cols=142 Identities=20% Similarity=0.184 Sum_probs=85.8
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
.+...|+++|.+|+|||||++.+.+..... ......+. +........++.++||||.. .......+.+|+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~------~~~~~~g~-i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDv 106 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ------NISDIKGP-ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADL 106 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC------cccccccc-EEEEecCCceEEEEeCCchH---HHHHHHHHhcCE
Confidence 456789999999999999999996543211 01111111 11133467789999999864 333344688999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeE-EEEEeCCCCCCcc-CHHHHHHHhCcccc--ccceeEEEeecccCC
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDLPDAV-SADELARYLDLKKL--DERVCMFEAVSGYDG 170 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~ 170 (204)
+++++|+..+..... .. +...+.. .+.|. |+|+||+|+.... ..+++...+..... .....+++.+||+++
T Consensus 107 VllviDa~~~~~~~~-~~-i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 107 VLLLIDASFGFEMET-FE-FLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred EEEEEecCcCCCHHH-HH-HHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 999999986543222 22 2233332 24664 5599999997532 12333333322111 124578999999987
Q ss_pred C
Q 028776 171 F 171 (204)
Q Consensus 171 ~ 171 (204)
.
T Consensus 182 ~ 182 (225)
T cd01882 182 G 182 (225)
T ss_pred C
Confidence 4
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.8e-13 Score=114.45 Aligned_cols=120 Identities=15% Similarity=0.094 Sum_probs=80.5
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCC----C------CCCccc--cccceeeeEEEEe----------CcEEE
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----L------PPDRIV--PTVGLNIGRIEVS----------NSKLV 71 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~------~~~~~~--~~~~~~~~~~~~~----------~~~~~ 71 (204)
..+..+|+++|+.++|||||+++|+........ . ...+.. .++......+.+. +..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 345669999999999999999999653321110 0 000111 1111111122332 55789
Q ss_pred EEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC
Q 028776 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 72 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 138 (204)
++||||+.++.......++.+|++++|+|+.++-. .+....+..+.. .++|+|+++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~-~~t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC-VQTETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC-ccHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 99999999998888888999999999999987532 223344444433 358999999999997
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.4e-12 Score=97.91 Aligned_cols=139 Identities=20% Similarity=0.359 Sum_probs=106.5
Q ss_pred ccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCC----------CHHHHHHHHHHHHhcCC
Q 028776 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS----------RFEDSKTALEKVLRNED 122 (204)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~ 122 (204)
.+|.|+....+...+.++.++|.+||..-++.|.+.+.++++++||+++++-+ ...+....+..+.....
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 35677777778888999999999999999999999999999999999998422 12345567778888887
Q ss_pred CCCCeEEEEEeCCCCCCc-----------------cCHHHHHHHhCccc-----cccceeEEEeecccCCCChHHHHHHH
Q 028776 123 LQGAPLLILANKQDLPDA-----------------VSADELARYLDLKK-----LDERVCMFEAVSGYDGFGIKESVEWL 180 (204)
Q Consensus 123 ~~~~p~ivv~nK~Dl~~~-----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~l~~~i 180 (204)
..+.++|+++||.|+.++ ...++...++...+ .....+.++.++|.+-.+|+.+|..+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 788999999999999761 12344444443111 11145667778999999999999999
Q ss_pred HHHHHhchhHH
Q 028776 181 VEVMERSKRTE 191 (204)
Q Consensus 181 ~~~i~~~~~~~ 191 (204)
.+.+...+.+.
T Consensus 340 ~d~Ii~~nlk~ 350 (354)
T KOG0082|consen 340 TDTIIQNNLKD 350 (354)
T ss_pred HHHHHHHHHHH
Confidence 99998776554
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=99.24 Aligned_cols=168 Identities=21% Similarity=0.192 Sum_probs=103.9
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhcc----CCCCCCCCccccccceeeeEE---------EEeCcEEEEEEcCCCcch
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYS----NVEGLPPDRIVPTVGLNIGRI---------EVSNSKLVFWDLGGQPGL 81 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~D~~g~~~~ 81 (204)
+.++++.++|+..||||||.++|...-+ +..++..++ ..|.+.-+..+ ..+..++.++|+||+...
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eR-giTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTER-GITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCccccc-ceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 4569999999999999999999943221 111111111 11222211111 123467899999999998
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCeEEEEEeCCCCCCccC----HHHHHHHhC--cc-
Q 028776 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLD--LK- 153 (204)
Q Consensus 82 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~--~~- 153 (204)
-+.+.......|..++|+|+....--...+ -.+.++ .-...|+|+||+|...+.. .++....+. .+
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 888888778899999999998542111111 111111 1246788889999876422 222222222 11
Q ss_pred ccccceeEEEeecccCC----CChHHHHHHHHHHHHhchh
Q 028776 154 KLDERVCMFEAVSGYDG----FGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 154 ~~~~~~~~~~~~Sa~~~----~~v~~l~~~i~~~i~~~~~ 189 (204)
.-...+.|++++|+..| +++.+|.+.+.+.+-+..+
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 11235589999999999 7888888888877754433
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.3e-13 Score=103.30 Aligned_cols=161 Identities=19% Similarity=0.109 Sum_probs=116.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEE
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 98 (204)
.|+-.|+--.|||||+..+++...+..+.... -..|+...++..+..+..+.++|.||++++-..+...+...|..++|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekK-RG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKK-RGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhh-cCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 47888999999999999997765544333322 23466666666777788999999999999999888888999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHHHHH
Q 028776 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178 (204)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 178 (204)
+|+++.-. .+..+.+ .++... .....++|+||+|+.++...++..+.+..... ....+++.+|+++|.|+++|.+
T Consensus 81 V~~deGl~-~qtgEhL-~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 81 VAADEGLM-AQTGEHL-LILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EeCccCcc-hhhHHHH-HHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHH
Confidence 99975421 1122222 122222 34577999999999875444444443332221 5567789999999999999999
Q ss_pred HHHHHHH
Q 028776 179 WLVEVME 185 (204)
Q Consensus 179 ~i~~~i~ 185 (204)
.|.+...
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9999884
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.6e-13 Score=114.69 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=81.3
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCC----------CCcc--ccccceeeeEEEE----------------
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDRI--VPTVGLNIGRIEV---------------- 65 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~~---------------- 65 (204)
..+..+|+|+|+.++|||||+++|+.......... .++. ..++......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 45678999999999999999999964332111100 0000 0111111111222
Q ss_pred eCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC
Q 028776 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 138 (204)
.+..++++||||+.++.......++.+|++|+|+|+.++-.. .....++.... .++|+|+++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~-~t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcc-cHHHHHHHHHH----CCCCEEEEEECCccc
Confidence 256789999999999999999999999999999999876322 22334444433 468999999999997
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-12 Score=95.35 Aligned_cols=122 Identities=12% Similarity=0.083 Sum_probs=73.7
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchH------HH---
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR------SI--- 84 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~--- 84 (204)
....++|+++|.+|+|||||+|++++........ ....+.....+....++..+.+|||||-.... ..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~---~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSA---FQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC---CCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 4577999999999999999999997643211111 11223333444455667889999999954331 11
Q ss_pred -HHHhcc--cCCEEEEEEeCCCCC-CHHHHHHHHHHHHhcCCC-CCCeEEEEEeCCCCCC
Q 028776 85 -WEKYYE--EAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPD 139 (204)
Q Consensus 85 -~~~~~~--~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~ 139 (204)
...++. ..|++++|..++... .+. ....++.+....+. --.++++|.||+|...
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 122232 578899887666432 222 12233333222220 1258999999999975
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-12 Score=95.26 Aligned_cols=121 Identities=8% Similarity=0.070 Sum_probs=71.7
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCC-CCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHH---HHHHhc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYY 89 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~ 89 (204)
..+.++|+++|.+|+||||++|++++...... ........+ ........+.++.++||||..+... .....+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~----~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRP----MMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeE----EEEEEEECCeEEEEEECCCCCchHHHHHHHHHHH
Confidence 45789999999999999999999976543211 111111111 1122345678999999999654322 111222
Q ss_pred ------ccCCEEEEEEeCCCCCCHHHH-HHHHHHHHhcCCC-CCCeEEEEEeCCCCCC
Q 028776 90 ------EEAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDL-QGAPLLILANKQDLPD 139 (204)
Q Consensus 90 ------~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~ 139 (204)
.+.|++++|..++... +... ...+..+....+. .-.+.|+++|+.|...
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 2589999996655321 2211 2223333222211 2358999999999764
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-12 Score=99.93 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=57.8
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe-----------------CcEEEEEEc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVFWDL 75 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~D~ 75 (204)
+....++|+++|.||||||||+++|++.......... .|.....+.+... ..++.++||
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pf----tTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDt 92 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPF----CTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDI 92 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCC----CcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEEC
Confidence 3467789999999999999999999764433322222 2323333333332 345899999
Q ss_pred CCCc-------chHHHHHHhcccCCEEEEEEeCC
Q 028776 76 GGQP-------GLRSIWEKYYEEAHAVVFVIDAA 102 (204)
Q Consensus 76 ~g~~-------~~~~~~~~~~~~~d~ii~v~d~~ 102 (204)
||.. .....+...++.+|++++|+|+.
T Consensus 93 pGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 93 AGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 9932 13334455678899999999984
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=102.39 Aligned_cols=120 Identities=21% Similarity=0.188 Sum_probs=84.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHH---------hhccCCCCCCCCcc----------ccccceeeeEEEEeCcEEEEEEcCC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLK---------SVYSNVEGLPPDRI----------VPTVGLNIGRIEVSNSKLVFWDLGG 77 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~---------~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~D~~g 77 (204)
.-+.+|+-+|.+|||||...|+ +.+..... ..+.. ...+..+...+++.+..+++.||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~-~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKS-GKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccC-CcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 3456899999999999999983 11111111 11111 1122333456778899999999999
Q ss_pred CcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC
Q 028776 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS 142 (204)
Q Consensus 78 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 142 (204)
|+++....-..+..+|.++.|+|+... ++..-..+...|...++|++=++||.|......
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG-----iE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG-----IEPQTLKLFEVCRLRDIPIFTFINKLDREGRDP 150 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC-----ccHHHHHHHHHHhhcCCceEEEeeccccccCCh
Confidence 999998888888889999999999865 222223444445557899999999999976444
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=92.41 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=64.5
Q ss_pred cEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc--cCHHH
Q 028776 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADE 145 (204)
Q Consensus 68 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~ 145 (204)
.+..++++.|..-....... -+|.++.|+|+.+.++... ....++ ...-++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence 46677888873211111111 1588999999987654221 111111 1233999999999863 33444
Q ss_pred HHHHhCccccccceeEEEeecccCCCChHHHHHHHHHHH
Q 028776 146 LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
+.+.+... ....+++++|+++|+|++++++++.+.+
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44444422 2357899999999999999999998765
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-13 Score=102.35 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=116.2
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcc------------ccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI------------VPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
+.+++.+|.-+|+...|||||..+++.............| ..|+..-..+++.....+.-.|+||+.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 5678999999999999999999998655544433222222 1233222223344566788999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc-----cCHHHHHHHhCcccc
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-----VSADELARYLDLKKL 155 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~ 155 (204)
|-..+.....++|+.|+|+.++|.. +.+...+++......-..+++.+||.|+.++ .-..|+.+.+++..+
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~----MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGP----MPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCC----CcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999863 3333344443322123678888999999852 224566666777777
Q ss_pred ccceeEEEeeccc---CCC-------ChHHHHHHHHHHHHhc
Q 028776 156 DERVCMFEAVSGY---DGF-------GIKESVEWLVEVMERS 187 (204)
Q Consensus 156 ~~~~~~~~~~Sa~---~~~-------~v~~l~~~i~~~i~~~ 187 (204)
+-...|++.-||. +|. .+.+|++.+.++++..
T Consensus 206 ~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P 247 (449)
T KOG0460|consen 206 DGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP 247 (449)
T ss_pred CCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence 7788888866654 442 2566666666666433
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.1e-12 Score=96.85 Aligned_cols=108 Identities=16% Similarity=0.073 Sum_probs=67.6
Q ss_pred eCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHH
Q 028776 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE 145 (204)
Q Consensus 66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 145 (204)
.+.++.++||+|..... ......+|.++++.+.... +++......+ .++|.++|+||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 36789999999853221 2345668888888554432 3333332222 3578899999999976443322
Q ss_pred HHHHh----Cc--cccccceeEEEeecccCCCChHHHHHHHHHHHH
Q 028776 146 LARYL----DL--KKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 146 ~~~~~----~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
....+ .. ........+++++||+++.|+++++++|.+...
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 22111 11 001112246899999999999999999998754
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=96.59 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=94.0
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCC-CCCcccccccee-------------------eeEEE---------
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIVPTVGLN-------------------IGRIE--------- 64 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~-------------------~~~~~--------- 64 (204)
..+.+.|.|.|+||+|||||++.|.......... ..-.+.|+..++ .+.-+
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 4578999999999999999999994333221100 000011111111 11000
Q ss_pred -------------EeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEE
Q 028776 65 -------------VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131 (204)
Q Consensus 65 -------------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 131 (204)
.-+.++.++.|.|--.-.. ....-+|.+++|+-..-.+....+..-+..+ .-|+|
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~v 173 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFV 173 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEE
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEE
Confidence 0256688888887433322 3345699999999998776655544443333 44999
Q ss_pred EeCCCCCC-ccCHHHHHHHhCccc--cccceeEEEeecccCCCChHHHHHHHHHHHHhc
Q 028776 132 ANKQDLPD-AVSADELARYLDLKK--LDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 132 ~nK~Dl~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
+||+|+.. .....++...+.... ......|++.+||.++.|++++++.|.+.....
T Consensus 174 VNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 174 VNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp EE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 99999654 333445555554222 223457899999999999999999998766433
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-12 Score=104.81 Aligned_cols=165 Identities=19% Similarity=0.250 Sum_probs=108.9
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEE----------------EeCcEEEEEEcCCCc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQP 79 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~ 79 (204)
+.+-+||+|+..+|||-|+..+.+.... ......+...++.++.... +.-..+.++||||++
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVq--egeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQ--EGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccc--cccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 4577899999999999999999654322 2222223334444443221 223357899999999
Q ss_pred chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC---ccC--------------
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD---AVS-------------- 142 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~---~~~-------------- 142 (204)
.|.++......-||.+|+|+|+-++-.- +....+ .+++. .+.|+||.+||+|.+- ...
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlep-qtiESi-~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEP-QTIESI-NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCc-chhHHH-HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 9999999999999999999999764111 111222 22332 4789999999999874 111
Q ss_pred -HHHHHHHhC-------cccc----------ccceeEEEeecccCCCChHHHHHHHHHHHHhc
Q 028776 143 -ADELARYLD-------LKKL----------DERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 143 -~~~~~~~~~-------~~~~----------~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~ 187 (204)
..++..+++ +..+ ...-+.++++||..|+||-+|+-+|++..+..
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 122222221 1111 12445789999999999999999999877543
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-12 Score=106.21 Aligned_cols=133 Identities=19% Similarity=0.158 Sum_probs=93.9
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCC--CCCCc--c----------ccccceeeeEEEEeC-cEEEEEEcCCC
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPPDR--I----------VPTVGLNIGRIEVSN-SKLVFWDLGGQ 78 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~~~--~----------~~~~~~~~~~~~~~~-~~~~~~D~~g~ 78 (204)
..+.-+|.|+|+..+|||||..+++........ ..... + ..|+........+.+ ..++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 556789999999999999999999543322211 11100 0 122222233455664 99999999999
Q ss_pred cchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC---ccCHHHHHHHhC
Q 028776 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD---AVSADELARYLD 151 (204)
Q Consensus 79 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~~ 151 (204)
.+|.......++.+|++++|+|+...-. .+....|++... .++|.|+++||+|... ....++++..+.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~-~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVE-PQTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCee-ecHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 9999999999999999999999986521 234455555544 4799999999999986 344566666665
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.6e-13 Score=99.84 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=41.0
Q ss_pred CCeEEEEEeCCCCCCcc--CHHHHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHH
Q 028776 125 GAPLLILANKQDLPDAV--SADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 125 ~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
..+-++|+||+|+.+.. +.++....+... .+..+++++|+++|+|++++.++|.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999997632 344444444322 245789999999999999999999764
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.1e-12 Score=91.34 Aligned_cols=157 Identities=19% Similarity=0.153 Sum_probs=86.7
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCC------CCCCCcc----ccccceeeeEE-------------------
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE------GLPPDRI----VPTVGLNIGRI------------------- 63 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~------~~~~~~~----~~~~~~~~~~~------------------- 63 (204)
.....+.|+++|+.|+|||||++++........ +.....+ ....+.....+
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 455678999999999999999999965422100 0000000 00001111100
Q ss_pred -EEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCcc-
Q 028776 64 -EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV- 141 (204)
Q Consensus 64 -~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~- 141 (204)
...+..+.+++|.|.-.... .+....+..+.|+|+.+.+.... .. ... ...|.++++||+|+....
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~~-~~~------~~~a~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--KY-PGM------FKEADLIVINKADLAEAVG 165 (207)
T ss_pred hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--hh-HhH------HhhCCEEEEEHHHccccch
Confidence 01134566777766211000 01112345566777765432111 10 011 246789999999997532
Q ss_pred -CHHHHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHHH
Q 028776 142 -SADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 142 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
...+....+... ....+++++||+++.|++++++++.+..
T Consensus 166 ~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 166 FDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 234444444321 1346899999999999999999998753
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-11 Score=94.49 Aligned_cols=81 Identities=25% Similarity=0.390 Sum_probs=53.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeC-----------------cEEEEEEcCCCcc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQPG 80 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~~ 80 (204)
++|+++|.||+|||||+++|++.......... .|+....+.+...+ .++.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypf----tTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~ 78 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPF----CTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVK 78 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccccc----ccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCC
Confidence 78999999999999999999775432222222 23233333333322 3589999999321
Q ss_pred -------hHHHHHHhcccCCEEEEEEeCC
Q 028776 81 -------LRSIWEKYYEEAHAVVFVIDAA 102 (204)
Q Consensus 81 -------~~~~~~~~~~~~d~ii~v~d~~ 102 (204)
........++.+|++++|+|+.
T Consensus 79 ~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 79 GASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2334445568899999999984
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-12 Score=91.26 Aligned_cols=156 Identities=22% Similarity=0.186 Sum_probs=107.1
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch-------HHHHHHh
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIWEKY 88 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~ 88 (204)
..-+|+++|.|.+|||||+..++...+...... ..|..+.-+.+.+++..+++.|.||.... +++....
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~ye----FTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYE----FTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhcee----eeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEE
Confidence 457899999999999999999976554433333 34555566678899999999999994332 3344455
Q ss_pred cccCCEEEEEEeCCCCCCHH-HHHHHHHHHHhcC----------------------------------------------
Q 028776 89 YEEAHAVVFVIDAACPSRFE-DSKTALEKVLRNE---------------------------------------------- 121 (204)
Q Consensus 89 ~~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~---------------------------------------------- 121 (204)
.+.+|.++.|.|++..+.-. -+...+..+--..
T Consensus 137 ArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Nae 216 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAE 216 (364)
T ss_pred eecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccce
Confidence 67899999999998764322 1222222110000
Q ss_pred ------------------CCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHH
Q 028776 122 ------------------DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 122 ------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
....++++.|-||+|. .+.+++.+... .++ -+.+|+.-+-|++.+++.+++.
T Consensus 217 vl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---vs~eevdrlAr-----~Pn--svViSC~m~lnld~lle~iWe~ 286 (364)
T KOG1486|consen 217 VLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---VSIEEVDRLAR-----QPN--SVVISCNMKLNLDRLLERIWEE 286 (364)
T ss_pred EEEecCCChHHHHHHHhccceEEEEEEEeeccce---ecHHHHHHHhc-----CCC--cEEEEeccccCHHHHHHHHHHH
Confidence 0123588999999996 56667666654 222 3457888889999999999998
Q ss_pred HH
Q 028776 184 ME 185 (204)
Q Consensus 184 i~ 185 (204)
+.
T Consensus 287 l~ 288 (364)
T KOG1486|consen 287 LN 288 (364)
T ss_pred hc
Confidence 85
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-11 Score=91.15 Aligned_cols=165 Identities=18% Similarity=0.144 Sum_probs=99.4
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCC---------CCCCCcccccc-----------ceeeeE----------
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE---------GLPPDRIVPTV-----------GLNIGR---------- 62 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~-----------~~~~~~---------- 62 (204)
...+...|.|.|.||+|||||+..|........ +..+..-..-. ....+.
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 466888999999999999999999943221111 11111000000 000000
Q ss_pred ------------EEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEE
Q 028776 63 ------------IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130 (204)
Q Consensus 63 ------------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iv 130 (204)
++--+.++.++.|.|--.... ....-+|.+++|.=..-.+.......-+.. +--|+
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE---------iaDi~ 194 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIME---------IADII 194 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhh---------hhhee
Confidence 001255688888887433332 233458999999888766555544443332 34489
Q ss_pred EEeCCCCCC-ccCHHHHHHHhCcc----ccccceeEEEeecccCCCChHHHHHHHHHHHHhchh
Q 028776 131 LANKQDLPD-AVSADELARYLDLK----KLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 131 v~nK~Dl~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
|+||.|... +....++...+... ..+....|++.+||.+|+|++++++.|.+.......
T Consensus 195 vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 195 VINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred eEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 999999655 22233334333322 223456689999999999999999999988754433
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-12 Score=94.43 Aligned_cols=157 Identities=20% Similarity=0.313 Sum_probs=99.8
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeC-cEEEEEEcCCC---------cchHH
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQ---------PGLRS 83 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~---------~~~~~ 83 (204)
..+.+-|+++|.+|+|||||+++|++.-- +.++...-|...+.......+ ..+.+.||-|- +.|..
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal----~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~A 250 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAAL----YPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQA 250 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhc----CccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHH
Confidence 45778999999999999999999975332 223333334443333333433 34667799982 33333
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCe----EEEEEeCCCCCCccCHHHHHHHhCccccccce
Q 028776 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP----LLILANKQDLPDAVSADELARYLDLKKLDERV 159 (204)
Q Consensus 84 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 159 (204)
.... +..+|.++.|.|+++|..-.+.... .+.+...+.+..| +|=|-||+|..+..... ..
T Consensus 251 TLee-VaeadlllHvvDiShP~ae~q~e~V-l~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~------------E~- 315 (410)
T KOG0410|consen 251 TLEE-VAEADLLLHVVDISHPNAEEQRETV-LHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------------EK- 315 (410)
T ss_pred HHHH-HhhcceEEEEeecCCccHHHHHHHH-HHHHHhcCCCcHHHHhHHHhhccccccccccCcc------------cc-
Confidence 3333 3569999999999999754443333 3444444433333 45566888875531110 01
Q ss_pred eEEEeecccCCCChHHHHHHHHHHHHhchh
Q 028776 160 CMFEAVSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 160 ~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
.-.+.+||.+|.|++++...+-.++.....
T Consensus 316 n~~v~isaltgdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 316 NLDVGISALTGDGLEELLKAEETKVASETT 345 (410)
T ss_pred CCccccccccCccHHHHHHHHHHHhhhhhe
Confidence 115679999999999999999988865443
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.1e-10 Score=87.99 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=70.9
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccC----------------CCCCCCCccccccceee-----eEE---EEeCc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSN----------------VEGLPPDRIVPTVGLNI-----GRI---EVSNS 68 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~-----~~~---~~~~~ 68 (204)
|....+.|+|+|+.++|||||++++.+.... .+.....++ .|....+ .++ +.-..
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktI-tTTePkfvP~kAvEI~~~~~~~~ 91 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTI-MTTEPKFVPNEAVEININEGTKF 91 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCc-ccCCCccccCcceEEeccCCCcc
Confidence 5678899999999999999999999765110 011111011 1222112 122 22346
Q ss_pred EEEEEEcCCCc--------chHH---------------------HHHHhcc-cCCEEEEEE-eCC----CCCCHHHH-HH
Q 028776 69 KLVFWDLGGQP--------GLRS---------------------IWEKYYE-EAHAVVFVI-DAA----CPSRFEDS-KT 112 (204)
Q Consensus 69 ~~~~~D~~g~~--------~~~~---------------------~~~~~~~-~~d~ii~v~-d~~----~~~s~~~~-~~ 112 (204)
++.++||+|-. +... -....+. ++|..++|. |.+ ..+.+... ..
T Consensus 92 ~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~ 171 (492)
T TIGR02836 92 KVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEER 171 (492)
T ss_pred cEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHH
Confidence 89999999910 0000 1333455 789888888 764 11223333 34
Q ss_pred HHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 113 ALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 113 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
++..+.. .++|+|+++||.|-..
T Consensus 172 ~i~eLk~----~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 172 VIEELKE----LNKPFIILLNSTHPYH 194 (492)
T ss_pred HHHHHHh----cCCCEEEEEECcCCCC
Confidence 4444433 4799999999999543
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-10 Score=83.86 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=47.9
Q ss_pred CcEEEEEEcCCCcc-------------hHHHHHHhccc-CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEE
Q 028776 67 NSKLVFWDLGGQPG-------------LRSIWEKYYEE-AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132 (204)
Q Consensus 67 ~~~~~~~D~~g~~~-------------~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~ 132 (204)
..++.++||||-.. ...+...++++ .+.+++|+|+...-.-.......+.+- ....|+|+|+
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~Vi 199 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVI 199 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEE
Confidence 36799999999531 12345556664 568999999865322122222222222 2468999999
Q ss_pred eCCCCCCccCHHHHHHHhC
Q 028776 133 NKQDLPDAVSADELARYLD 151 (204)
Q Consensus 133 nK~Dl~~~~~~~~~~~~~~ 151 (204)
||+|..+.... +...+.
T Consensus 200 TK~D~~~~~~~--~~~~~~ 216 (240)
T smart00053 200 TKLDLMDEGTD--ARDILE 216 (240)
T ss_pred ECCCCCCccHH--HHHHHh
Confidence 99999864322 455554
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-10 Score=87.42 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=103.9
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE----eCcEEEEEEcCCCcchHHHHHHhccc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
..-+|+++|+.|+|||||+.+|-+......+ +-..+.+..+.. +..++.+|-..|+.....+....+..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~Kkg-------sgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~a 123 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKG-------SGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPA 123 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCC-------CCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccc
Confidence 6689999999999999999999543322222 222222222211 23468899998987776666655533
Q ss_pred ---C-CEEEEEEeCCCCCCHHH-HHHHHHHHHhcCC--------------------------------------------
Q 028776 92 ---A-HAVVFVIDAACPSRFED-SKTALEKVLRNED-------------------------------------------- 122 (204)
Q Consensus 92 ---~-d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~-------------------------------------------- 122 (204)
+ -.+|++.|.++|+...+ +..|..-+..+..
T Consensus 124 ts~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~ 203 (473)
T KOG3905|consen 124 TSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSS 203 (473)
T ss_pred cCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCc
Confidence 2 46788899999976543 4444432211100
Q ss_pred ----------------CCCCeEEEEEeCCCCCC----ccC-----HHHHHHHhCccccccceeEEEeecccCCCChHHHH
Q 028776 123 ----------------LQGAPLLILANKQDLPD----AVS-----ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 177 (204)
Q Consensus 123 ----------------~~~~p~ivv~nK~Dl~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 177 (204)
.-.+|++||++|||... +.+ ++-++..+. .++-..+...+.+|+++..|++-+.
T Consensus 204 ~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lR-kFCLr~GaaLiyTSvKE~KNidlly 282 (473)
T KOG3905|consen 204 ADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLR-KFCLRYGAALIYTSVKETKNIDLLY 282 (473)
T ss_pred cccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHH-HHHHHcCceeEEeecccccchHHHH
Confidence 22469999999999943 222 222222222 2223467788999999999999999
Q ss_pred HHHHHHHHh
Q 028776 178 EWLVEVMER 186 (204)
Q Consensus 178 ~~i~~~i~~ 186 (204)
..|...+.-
T Consensus 283 KYivhr~yG 291 (473)
T KOG3905|consen 283 KYIVHRSYG 291 (473)
T ss_pred HHHHHHhcC
Confidence 999887753
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-11 Score=91.07 Aligned_cols=95 Identities=20% Similarity=0.145 Sum_probs=71.0
Q ss_pred cchHHHHHHhcccCCEEEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHH-HHHHHhCccccc
Q 028776 79 PGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD-ELARYLDLKKLD 156 (204)
Q Consensus 79 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 156 (204)
+++..+.+.+++++|++++|+|+.++. ++..+..|+..+. . .++|+++|+||+||.+..... +....+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~-~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----- 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAE-A---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR----- 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence 444445556789999999999999887 8888888886543 2 479999999999996532221 2222222
Q ss_pred cceeEEEeecccCCCChHHHHHHHHH
Q 028776 157 ERVCMFEAVSGYDGFGIKESVEWLVE 182 (204)
Q Consensus 157 ~~~~~~~~~Sa~~~~~v~~l~~~i~~ 182 (204)
..+.+++++||++|.|++++++.+..
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 24578999999999999999998864
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-11 Score=83.53 Aligned_cols=65 Identities=25% Similarity=0.282 Sum_probs=43.7
Q ss_pred CcEEEEEEcCCCcc----hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCC
Q 028776 67 NSKLVFWDLGGQPG----LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135 (204)
Q Consensus 67 ~~~~~~~D~~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 135 (204)
...+.++||||-.. ....+..++..+|++++|.++++..+-.....+. ..... ....+++|.||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~-~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLK-QMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHH-HHHTT---TCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHH-HHhcC---CCCeEEEEEcCC
Confidence 34689999999432 2356777789999999999999865444433333 33333 244599999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-11 Score=94.55 Aligned_cols=131 Identities=22% Similarity=0.382 Sum_probs=94.5
Q ss_pred cccceeeeEEEE-eCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCC----------CCHHHHHHHHHHHHhcCC
Q 028776 54 PTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALEKVLRNED 122 (204)
Q Consensus 54 ~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 122 (204)
+|.++....+.. ....+.++|++|+..-++.|.+.+.++++||||+++++- ..+.+....+..+.....
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 455555556777 788999999999999999999999999999999998621 225566777888887776
Q ss_pred CCCCeEEEEEeCCCCCC------c--------------cCHHHHHHHhCcccc----cc---ceeEEEeecccCCCChHH
Q 028776 123 LQGAPLLILANKQDLPD------A--------------VSADELARYLDLKKL----DE---RVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 123 ~~~~p~ivv~nK~Dl~~------~--------------~~~~~~~~~~~~~~~----~~---~~~~~~~~Sa~~~~~v~~ 175 (204)
..+.|+|+++||.|+.. . .+.+.+..++...+. .. ..+.++.++|.+..++..
T Consensus 301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~ 380 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK 380 (389)
T ss_dssp GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence 67899999999999865 1 223444444432111 11 556677899999999999
Q ss_pred HHHHHHHHH
Q 028776 176 SVEWLVEVM 184 (204)
Q Consensus 176 l~~~i~~~i 184 (204)
+|+.+.+.|
T Consensus 381 v~~~v~~~i 389 (389)
T PF00503_consen 381 VFNAVKDII 389 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcCcC
Confidence 998887654
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=89.12 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch-------HHHHHHhcc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIWEKYYE 90 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~ 90 (204)
-++.++|.|.+||||++..+++..++....+........ +.+.++..++.+.|.||.... +++.....+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vp----G~~~y~gaKiqlldlpgiiegakdgkgrg~qviavar 135 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVP----GVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVAR 135 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEec----ceEeccccceeeecCcchhcccccCCCCccEEEEEee
Confidence 389999999999999999998877766665544443322 336678899999999994222 234445567
Q ss_pred cCCEEEEEEeCCCCCCHHHHHH-HHH------------------------------------H-----------------
Q 028776 91 EAHAVVFVIDAACPSRFEDSKT-ALE------------------------------------K----------------- 116 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~-~~~------------------------------------~----------------- 116 (204)
.|..+++|.|+..|-+...+.+ .+. .
T Consensus 136 tcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~D 215 (358)
T KOG1487|consen 136 TCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFD 215 (358)
T ss_pred cccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecC
Confidence 7999999999987754332211 111 0
Q ss_pred -----HHhcCCC--CCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHHHH
Q 028776 117 -----VLRNEDL--QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 117 -----~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
++..... ..+|++.+.||+|.+.- +|+.-. ......+++||..+.|++++++.+++.+.
T Consensus 216 aT~DdLIdvVegnr~yVp~iyvLNkIdsISi---EELdii-------~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 216 ATADDLIDVVEGNRIYVPCIYVLNKIDSISI---EELDII-------YTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred cchhhhhhhhccCceeeeeeeeecccceeee---ecccee-------eeccceeecccccccchHHHHHHHhhcch
Confidence 0000001 24699999999997542 222222 12345889999999999999999998874
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-10 Score=92.07 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=105.4
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCC
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
.++.++..++|+.++|||.+++++.+.--.. ....+..+...++......+...+.+.|.+-. ........- ..||
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhcccccc--ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 4677999999999999999999997643322 11112222233333334445555666676643 221111111 6699
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC-----ccCHHHHHHHhCccccccceeEEEeeccc
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-----AVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
+++++||++++.+|......+...... .+.|+++|++|+|+.+ ....++....+. ..+.+.+|.+
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~-------i~~P~~~S~~ 567 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLG-------LPPPIHISSK 567 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcC-------CCCCeeeccC
Confidence 999999999999999988877666544 5799999999999976 233455555443 1234556666
Q ss_pred CCCChHHHHHHHHHHHHhch
Q 028776 169 DGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 169 ~~~~v~~l~~~i~~~i~~~~ 188 (204)
.... .++|..|..+....+
T Consensus 568 ~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 568 TLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCCC-chHHHHHHHhhhCCC
Confidence 4333 899999998886554
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=88.29 Aligned_cols=128 Identities=17% Similarity=0.241 Sum_probs=67.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCC----CCCccccccceeeeE--EEEe--CcEEEEEEcCCCcc-------h
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPG-------L 81 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~--~~~~~~~D~~g~~~-------~ 81 (204)
.++|+|+|..|+|||||++.|++........ .......+..+.... +..+ ..++.++||||-.+ +
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 6899999999999999999997643322210 001112222222222 2222 34788999999210 0
Q ss_pred -------HHHHHHhc-------------ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCcc
Q 028776 82 -------RSIWEKYY-------------EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (204)
Q Consensus 82 -------~~~~~~~~-------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 141 (204)
......++ ...|+++|.++.+...--..-...+..+. ..+++|.|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS-----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc-----ccccEEeEEecccccCHH
Confidence 00111111 23789999999875321122223333333 358999999999997744
Q ss_pred CHHHHHHH
Q 028776 142 SADELARY 149 (204)
Q Consensus 142 ~~~~~~~~ 149 (204)
.....+..
T Consensus 159 el~~~k~~ 166 (281)
T PF00735_consen 159 ELQAFKQR 166 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44333333
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-11 Score=87.48 Aligned_cols=78 Identities=21% Similarity=0.176 Sum_probs=51.9
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHh-cCCCCCCeEEEEEeCCCCCCccCH--HHHHHHhCccccccceeEEEeecccCC
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLR-NEDLQGAPLLILANKQDLPDAVSA--DELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
.-|+|+|+...+.... + +.... ..-++|+||.|+.+...+ +...+..... .+..+++++|+++|
T Consensus 120 ~~v~VidvteGe~~P~---------K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~---np~~~ii~~n~ktg 186 (202)
T COG0378 120 LRVVVIDVTEGEDIPR---------KGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEV---NPEAPIIFTNLKTG 186 (202)
T ss_pred eEEEEEECCCCCCCcc---------cCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHh---CCCCCEEEEeCCCC
Confidence 6777778776542111 1 11111 255999999999884433 5544444322 35678999999999
Q ss_pred CChHHHHHHHHHHH
Q 028776 171 FGIKESVEWLVEVM 184 (204)
Q Consensus 171 ~~v~~l~~~i~~~i 184 (204)
+|++++++++....
T Consensus 187 ~G~~~~~~~i~~~~ 200 (202)
T COG0378 187 EGLDEWLRFIEPQA 200 (202)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999999987654
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.4e-10 Score=85.43 Aligned_cols=86 Identities=23% Similarity=0.391 Sum_probs=63.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEE----------E----EeCcEEEEEEcCC-----
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI----------E----VSNSKLVFWDLGG----- 77 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~~~D~~g----- 77 (204)
.++++|+|.||+|||||.++++........+...++.|..+..+... . .-...+.++|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 57899999999999999999987554445555555655555433210 0 1134688999998
Q ss_pred --CcchHHHHHHhcccCCEEEEEEeCC
Q 028776 78 --QPGLRSIWEKYYEEAHAVVFVIDAA 102 (204)
Q Consensus 78 --~~~~~~~~~~~~~~~d~ii~v~d~~ 102 (204)
.+..++.+-.-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3556777778889999999999996
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=77.03 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=73.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccc-cccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV-PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 96 (204)
+||+++|..|+|||+|+.++.. ........ ++.+ +........+.++.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~------~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQ------FPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVL 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhc------CCccccCceehhh-----------------------hhhccccccCCCCEEE
Confidence 5899999999999999999932 21111111 1211 2222334456789999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChH
Q 028776 97 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 174 (204)
Q Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 174 (204)
+|++.....++... |...+... ...+.|.++++||.|+.+... +.. ....++.++|++++.|+.
T Consensus 52 ~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~---~~~--------~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 52 QCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQ---VAT--------EEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCc---CCH--------HHHHHHHHHhCCCcchhh
Confidence 99999998887655 55444433 335789999999999843211 101 112245678999999884
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=90.67 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=72.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcch----------HHHHH
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----------RSIWE 86 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~ 86 (204)
.++|+++|.+|+||||++|++++......... ...|..........++..+.++||||.... .....
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~---~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAF---GMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCC---CCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 46899999999999999999987532211111 112222222223346788999999994432 11122
Q ss_pred Hhcc--cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCC-CCCeEEEEEeCCCCCC
Q 028776 87 KYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPD 139 (204)
Q Consensus 87 ~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~ 139 (204)
.++. .+|++++|..++.......-...++.+...++. .-..+|||+|+.|...
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2333 489999998876433222233445555444431 1258899999999986
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=83.38 Aligned_cols=137 Identities=18% Similarity=0.309 Sum_probs=96.8
Q ss_pred cccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCC----------CCCCHHHHHHHHHHHHhcCCC
Q 028776 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALEKVLRNEDL 123 (204)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 123 (204)
+|.++..+.++...+.+.++|.+|+..-.+.|.+.+++.-.+++++.++ ++...++....+..++.+...
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 4455544455556777889999999999999999888888887776654 334456677788899999888
Q ss_pred CCCeEEEEEeCCCCCCc-cC-----------------HHHHHHHhC----ccccc-cceeEEEeecccCCCChHHHHHHH
Q 028776 124 QGAPLLILANKQDLPDA-VS-----------------ADELARYLD----LKKLD-ERVCMFEAVSGYDGFGIKESVEWL 180 (204)
Q Consensus 124 ~~~p~ivv~nK~Dl~~~-~~-----------------~~~~~~~~~----~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~i 180 (204)
.+.++|+.+||.|+.++ .. .+...+++- ..... ...+.-+.++|.+-+|++-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 89999999999999862 11 122222211 11111 122334568899999999999999
Q ss_pred HHHHHhchhH
Q 028776 181 VEVMERSKRT 190 (204)
Q Consensus 181 ~~~i~~~~~~ 190 (204)
.+.+.+.+..
T Consensus 345 kDtiLq~~Lk 354 (359)
T KOG0085|consen 345 KDTILQLNLK 354 (359)
T ss_pred HHHHHHhhhH
Confidence 9988776544
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=88.32 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=104.2
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE----eCcEEEEEEcCCCcchHHHHHHhcc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
.+.-.|+|+|..++|||||+.+|.+...... ..-.++.|..+.. +..++.+|-..|...+..+....+.
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~~~~-------~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt 95 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIEDPKK-------GLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALT 95 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCCCCC-------CcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCC
Confidence 4668999999999999999999954321111 1123333333221 2246899998887777666655554
Q ss_pred c----CCEEEEEEeCCCCCCHH-HHHHHHHHHHhc-------------------------------C-------------
Q 028776 91 E----AHAVVFVIDAACPSRFE-DSKTALEKVLRN-------------------------------E------------- 121 (204)
Q Consensus 91 ~----~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~-------------------------------~------------- 121 (204)
. --.+|+|+|.+.|+.+- .+..|+..+..+ .
T Consensus 96 ~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~ 175 (472)
T PF05783_consen 96 PENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSS 175 (472)
T ss_pred cccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccc
Confidence 2 24889999999997663 344443211100 0
Q ss_pred --C---------------CCCCeEEEEEeCCCCCCc----c-----CHHHHHHHhCccccccceeEEEeecccCCCChHH
Q 028776 122 --D---------------LQGAPLLILANKQDLPDA----V-----SADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 122 --~---------------~~~~p~ivv~nK~Dl~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 175 (204)
. .-.+|++||++|+|.... . .++-++..+. ..+-..+...+.+|++...+++-
T Consensus 176 ~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR-~~cL~yGAsL~yts~~~~~n~~~ 254 (472)
T PF05783_consen 176 SSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR-TFCLKYGASLIYTSVKEEKNLDL 254 (472)
T ss_pred ccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH-HHHHhcCCeEEEeeccccccHHH
Confidence 0 013699999999998641 1 1122222222 22224677888999999999999
Q ss_pred HHHHHHHHHHhch
Q 028776 176 SVEWLVEVMERSK 188 (204)
Q Consensus 176 l~~~i~~~i~~~~ 188 (204)
|+..|...+....
T Consensus 255 L~~yi~h~l~~~~ 267 (472)
T PF05783_consen 255 LYKYILHRLYGFP 267 (472)
T ss_pred HHHHHHHHhccCC
Confidence 9999888776543
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.2e-10 Score=85.66 Aligned_cols=167 Identities=13% Similarity=0.099 Sum_probs=101.8
Q ss_pred CCcccEEEEEcCCCCChHHHHHHH-HhhccCCCCCCCCcc-------c--cccceeeeEEEE------------------
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRI-------V--PTVGLNIGRIEV------------------ 65 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l-~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~------------------ 65 (204)
.+.++.+++.|+.+.|||||+..| ++...+-.+..+... . -+-.+++..+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 567899999999999999999988 333333222222111 0 011111111111
Q ss_pred -----eCcEEEEEEcCCCcchHHHHHHhc--ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC
Q 028776 66 -----SNSKLVFWDLGGQPGLRSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 66 -----~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 138 (204)
.+.-+.++||.|++.+.+.....+ .+.|..++++.+++.-+- +-+.=.-+... .+.|+|+++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~--~tkEHLgi~~a---~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK--MTKEHLGIALA---MELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch--hhhHhhhhhhh---hcCCEEEEEEecccC
Confidence 234588999999999877554433 559999999999986322 21111112212 478999999999998
Q ss_pred CccCHHHHHHH----hCc---c-----------------ccccceeEEEeecccCCCChHHHHHHHHHHHHh
Q 028776 139 DAVSADELARY----LDL---K-----------------KLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 139 ~~~~~~~~~~~----~~~---~-----------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
+....+.+.+. +.. . ..+....|++.+|+-+|+|++-| ..+...++.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL-~e~f~~Lp~ 339 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL-DEFFLLLPK 339 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH-HHHHHhCCc
Confidence 75544333322 221 0 01234679999999999999844 444444443
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=94.20 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=81.2
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCC---ccc------cccceeeeE---------EEEeCcEEEEEEc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIV------PTVGLNIGR---------IEVSNSKLVFWDL 75 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~---~~~------~~~~~~~~~---------~~~~~~~~~~~D~ 75 (204)
.....+|+++|+-++|||+|+..|.....+......+ .+. ..-++...- ....+.-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 3456899999999999999999995433322211111 111 111111110 1113445789999
Q ss_pred CCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 76 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
||+-.+...+...++.+|++++++|+.+.-.+. ....+++.++ ...|+++|+||.|+.-
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln-tEr~ikhaiq----~~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN-TERIIKHAIQ----NRLPIVVVINKVDRLI 263 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceee-HHHHHHHHHh----ccCcEEEEEehhHHHH
Confidence 999999999999999999999999998764432 2333444443 4789999999999864
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6e-10 Score=81.08 Aligned_cols=169 Identities=19% Similarity=0.199 Sum_probs=105.8
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHH---HHHHhccc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYEE 91 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~ 91 (204)
...++|+++|...|||||+.+.....+.+-.. --..+|..+....+....+++.+||.||+-.+.. .....+++
T Consensus 25 ~~kp~ilLMG~rRsGKsSI~KVVFhkMsPneT---lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~ 101 (347)
T KOG3887|consen 25 GMKPRILLMGLRRSGKSSIQKVVFHKMSPNET---LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRG 101 (347)
T ss_pred CCCceEEEEeecccCcchhhheeeeccCCCce---eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhc
Confidence 34588999999999999999887655443221 1122333332223444667899999999755432 34567789
Q ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHHh-cCCCCCCeEEEEEeCCCCCCccCH----HHHHHHhC----ccccccceeE
Q 028776 92 AHAVVFVIDAACPSRFED-SKTALEKVLR-NEDLQGAPLLILANKQDLPDAVSA----DELARYLD----LKKLDERVCM 161 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~-~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~----~~~~~~~~~~ 161 (204)
+.+.++|+|+.+. +.+ +...-..+.+ +.-.+++.+=+.+.|.|-+.+... .++.++.+ ........+.
T Consensus 102 ~gALifvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vs 179 (347)
T KOG3887|consen 102 VGALIFVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVS 179 (347)
T ss_pred cCeEEEEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEE
Confidence 9999999999764 222 2222112211 222367899999999998763222 22222222 2233345567
Q ss_pred EEeecccCCCChHHHHHHHHHHHHhchh
Q 028776 162 FEAVSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 162 ~~~~Sa~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
++.+|-.+ ..+-|.|..+++++.++-.
T Consensus 180 f~LTSIyD-HSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 180 FYLTSIYD-HSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred EEEeeecc-hHHHHHHHHHHHHHhhhch
Confidence 88888775 4588899998888765544
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.3e-10 Score=77.10 Aligned_cols=96 Identities=22% Similarity=0.222 Sum_probs=64.5
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcccccccee
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (204)
+.....+.++++|++++|+|++++..... ..+..++.. .++|+++|+||+|+.......+...... ....
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-----~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKE-----SEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHH-----hCCC
Confidence 35667788888999999999987643221 112222222 3589999999999864322222211111 1335
Q ss_pred EEEeecccCCCChHHHHHHHHHHHHh
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 161 ~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
+++++||+++.|++++++.+.+.+..
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHhh
Confidence 78999999999999999999988753
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=83.14 Aligned_cols=79 Identities=25% Similarity=0.417 Sum_probs=51.9
Q ss_pred EEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeC-----------------cEEEEEEcCCCc---
Q 028776 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQP--- 79 (204)
Q Consensus 20 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~--- 79 (204)
|+++|.||+|||||+++|++.......... .|+....+.+...+ ..+.++|+||..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pf----tTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a 76 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPF----CTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 76 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccc----cchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCC
Confidence 589999999999999999875443222222 23333333333332 258999999932
Q ss_pred ----chHHHHHHhcccCCEEEEEEeCC
Q 028776 80 ----GLRSIWEKYYEEAHAVVFVIDAA 102 (204)
Q Consensus 80 ----~~~~~~~~~~~~~d~ii~v~d~~ 102 (204)
.....+...++.+|++++|+|+.
T Consensus 77 ~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 77 SKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred chhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 22334445567899999999974
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-11 Score=89.81 Aligned_cols=172 Identities=16% Similarity=0.147 Sum_probs=112.1
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-------E-------------------------
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-------R------------------------- 62 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~------------------------- 62 (204)
.-.++|.-+|+.-.||||+++++.+...-.. ..+....+.+..+ +
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrF---K~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c 112 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRF---KNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC 112 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEe---hhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence 4569999999999999999999843322111 1111111111100 0
Q ss_pred ----EE--Ee-CcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCC
Q 028776 63 ----IE--VS-NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135 (204)
Q Consensus 63 ----~~--~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 135 (204)
.. .. -..+.++|+||++-....+......+|++++++..+.+..-.+..+.+..+.-. .-..++++-||+
T Consensus 113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKi 189 (466)
T KOG0466|consen 113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKI 189 (466)
T ss_pred ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechh
Confidence 00 00 135789999999988888887778899999999998654333333333332211 236889999999
Q ss_pred CCCCccCHHHHHHHhCcc--ccccceeEEEeecccCCCChHHHHHHHHHHHHhchhHHH
Q 028776 136 DLPDAVSADELARYLDLK--KLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTEM 192 (204)
Q Consensus 136 Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~~~~~ 192 (204)
|+..+....+..+..... .-...+.|++++||.-+.|++-+.+.|..+++...+...
T Consensus 190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~ 248 (466)
T KOG0466|consen 190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFT 248 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccC
Confidence 998865544433333311 112467799999999999999999999999976665543
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.7e-10 Score=90.04 Aligned_cols=177 Identities=16% Similarity=0.318 Sum_probs=117.9
Q ss_pred HhhhcCCcccEEEEEcCCCCChHHHHHHHH-hhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHH
Q 028776 9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLK-SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEK 87 (204)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 87 (204)
|.+.++-+++|+.|+|..++|||+|+.+++ +.+....+.....+.. .........-+.+.|-+|.... +
T Consensus 22 wtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kk-----E~vv~gqs~lLlirdeg~~~~a-----Q 91 (749)
T KOG0705|consen 22 WTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKK-----EVVVDGQSHLLLIRDEGGHPDA-----Q 91 (749)
T ss_pred eeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCcccee-----eEEeeccceEeeeecccCCchh-----h
Confidence 445577899999999999999999999973 3333222222211111 1113344455666677774433 4
Q ss_pred hcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC----HHHHHHHhCccccccceeEEE
Q 028776 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKKLDERVCMFE 163 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~ 163 (204)
+...+|++|||+...+..+|..+......+..+.....+|+++++++.=...... ..+...... +.....++
T Consensus 92 ft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~----~~krcsy~ 167 (749)
T KOG0705|consen 92 FCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSA----QMKRCSYY 167 (749)
T ss_pred hhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHH----hcCcccee
Confidence 4456899999999999999999887777776666667789999999864433111 122222221 23445688
Q ss_pred eecccCCCChHHHHHHHHHHHHhchhHHHHHhhhcC
Q 028776 164 AVSGYDGFGIKESVEWLVEVMERSKRTEMLRARAGA 199 (204)
Q Consensus 164 ~~Sa~~~~~v~~l~~~i~~~i~~~~~~~~~~~~~~~ 199 (204)
++++..|-+++..|+.+...+...+..+........
T Consensus 168 et~atyGlnv~rvf~~~~~k~i~~~~~qq~~~~~~~ 203 (749)
T KOG0705|consen 168 ETCATYGLNVERVFQEVAQKIVQLRKYQQLPASSSK 203 (749)
T ss_pred ecchhhhhhHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 999999999999999999988777666555444333
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=77.09 Aligned_cols=132 Identities=18% Similarity=0.305 Sum_probs=77.2
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCC----CCCCCccccccceeeeE--EEEe--CcEEEEEEcCCCcc----
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----GLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPG---- 80 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~D~~g~~~---- 80 (204)
+..-.++|.++|+.|+|||||+|+|++..-... +.......+++.+.... +..+ ..++.++||||--+
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 346789999999999999999999976521111 11111133444444443 2223 34678899999211
Q ss_pred ----------hHHHHHHhc--------------ccCCEEEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCeEEEEEeCC
Q 028776 81 ----------LRSIWEKYY--------------EEAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQ 135 (204)
Q Consensus 81 ----------~~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~ 135 (204)
...+...++ ..+|+++|.+..+... +..+ ...+..+. ..+.+|.|+.|+
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls-----~~vNlIPVI~Ka 172 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLS-----KRVNLIPVIAKA 172 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHh-----cccCeeeeeecc
Confidence 111222222 1378999999876432 2222 23333333 358899999999
Q ss_pred CCCCccCHHHHHHHh
Q 028776 136 DLPDAVSADELARYL 150 (204)
Q Consensus 136 Dl~~~~~~~~~~~~~ 150 (204)
|........+.++..
T Consensus 173 D~lT~~El~~~K~~I 187 (373)
T COG5019 173 DTLTDDELAEFKERI 187 (373)
T ss_pred ccCCHHHHHHHHHHH
Confidence 998755544444443
|
|
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.3e-09 Score=75.82 Aligned_cols=131 Identities=18% Similarity=0.370 Sum_probs=92.2
Q ss_pred EEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCC----------CCHHHHHHHHHHHHhcCCCCCCeEEEE
Q 028776 62 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALEKVLRNEDLQGAPLLIL 131 (204)
Q Consensus 62 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv 131 (204)
++..+-+++.++|.+|+.+-++.|.+.+.+.-+|++|+..+.- ..+.+....+..+........+.+|+.
T Consensus 196 ~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlF 275 (379)
T KOG0099|consen 196 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILF 275 (379)
T ss_pred EEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEE
Confidence 4555677899999999999999999999999999999998721 123344556666666666678999999
Q ss_pred EeCCCCCCc---cCHHHHHHHhCc-----------------------------cc-----c---ccceeEEEeecccCCC
Q 028776 132 ANKQDLPDA---VSADELARYLDL-----------------------------KK-----L---DERVCMFEAVSGYDGF 171 (204)
Q Consensus 132 ~nK~Dl~~~---~~~~~~~~~~~~-----------------------------~~-----~---~~~~~~~~~~Sa~~~~ 171 (204)
+||.|+..+ .....+.+++.+ .+ . ......++.++|.+-+
T Consensus 276 LNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTe 355 (379)
T KOG0099|consen 276 LNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE 355 (379)
T ss_pred ecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechH
Confidence 999999651 111111111110 00 0 1223345678899999
Q ss_pred ChHHHHHHHHHHHHhchhHHH
Q 028776 172 GIKESVEWLVEVMERSKRTEM 192 (204)
Q Consensus 172 ~v~~l~~~i~~~i~~~~~~~~ 192 (204)
++.++|+...+.+...+..+.
T Consensus 356 nIrrVFnDcrdiIqr~hlrqy 376 (379)
T KOG0099|consen 356 NIRRVFNDCRDIIQRMHLRQY 376 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999987766543
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=76.76 Aligned_cols=160 Identities=19% Similarity=0.308 Sum_probs=92.8
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE-eCcEEEEEEcCCCcchHH-----HHHHhc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRS-----IWEKYY 89 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~ 89 (204)
..-||+++|.+|+|||++-..+...+. .........|+.+.-....+ .+.-+.+||++|++.+.. +-...+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~---a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF 79 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYI---ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIF 79 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhh---hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhh
Confidence 346899999999999998665532111 11112222333332222222 346788999999985543 334567
Q ss_pred ccCCEEEEEEeCCCCC---CHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHh-Cc--cccccceeEEE
Q 028776 90 EEAHAVVFVIDAACPS---RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL-DL--KKLDERVCMFE 163 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~--~~~~~~~~~~~ 163 (204)
++.+++++|+|+...+ .+..-+..+..+++.. +...+.....|+|+......+++-+.- .. .........++
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f 157 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCF 157 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhccccccccc
Confidence 8899999999998543 3344455555666554 677889999999998744333222221 10 00112335567
Q ss_pred eecccCCCChHHHHHHHH
Q 028776 164 AVSGYDGFGIKESVEWLV 181 (204)
Q Consensus 164 ~~Sa~~~~~v~~l~~~i~ 181 (204)
++|..+. .+-..+..|.
T Consensus 158 ~TsiwDe-tl~KAWS~iv 174 (295)
T KOG3886|consen 158 PTSIWDE-TLYKAWSSIV 174 (295)
T ss_pred ccchhhH-HHHHHHHHHH
Confidence 7766542 2333344443
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-09 Score=81.96 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=63.3
Q ss_pred HhcccCCEEEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEee
Q 028776 87 KYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (204)
..+.++|.+++|+|+.++. ++..+..++.... . .++|+|+|+||+|+......+.....+. ..+++++.+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~-~---~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v~~i 155 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAE-S---TGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQPLFI 155 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeEEEE
Confidence 4478899999999999876 3344556655442 2 4789999999999975432333333332 334578999
Q ss_pred cccCCCChHHHHHHHHHH
Q 028776 166 SGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 166 Sa~~~~~v~~l~~~i~~~ 183 (204)
||+++.|++++++.+...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999988654
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-09 Score=75.29 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=65.3
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc-cCHHHHHHHh---Cccccc
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYL---DLKKLD 156 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~---~~~~~~ 156 (204)
+...+..+++.+|++++|+|+.++..- |...+... ..++|+++|+||+|+... ........+. ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 577888889999999999999876421 11111111 146899999999999753 3233333332 001111
Q ss_pred cceeEEEeecccCCCChHHHHHHHHHHHH
Q 028776 157 ERVCMFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 157 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
....+++++||+++.|++++++.|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11235899999999999999999998774
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.5e-09 Score=80.32 Aligned_cols=89 Identities=20% Similarity=0.074 Sum_probs=65.3
Q ss_pred HHHhcccCCEEEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEE
Q 028776 85 WEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE 163 (204)
Q Consensus 85 ~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (204)
...++.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+..........+. ..+.+++
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~g~~v~ 142 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEAL-----ALGYPVL 142 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHH-----hCCCeEE
Confidence 345678999999999999987 77777777665443 3689999999999975422111111111 2356889
Q ss_pred eecccCCCChHHHHHHHHH
Q 028776 164 AVSGYDGFGIKESVEWLVE 182 (204)
Q Consensus 164 ~~Sa~~~~~v~~l~~~i~~ 182 (204)
.+||+++.|+++++..+..
T Consensus 143 ~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 143 AVSAKTGEGLDELREYLKG 161 (287)
T ss_pred EEECCCCccHHHHHhhhcc
Confidence 9999999999999988764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=71.88 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=59.8
Q ss_pred HhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeec
Q 028776 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
..++.+|.+++|+|+.++..- ....+...+... ..++|+|+|+||+|+.+.....+....+... ....++++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEee
Confidence 345789999999999987321 112222232221 2358999999999997543333333333321 122357899
Q ss_pred ccCCCChHHHHHHHHHHHH
Q 028776 167 GYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 167 a~~~~~v~~l~~~i~~~i~ 185 (204)
|+.+.|++++++.+.+...
T Consensus 77 a~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 77 INNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred ccccccHHHHHHHHHHHHh
Confidence 9999999999999987653
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.6e-09 Score=80.29 Aligned_cols=85 Identities=25% Similarity=0.202 Sum_probs=60.4
Q ss_pred hcccCCEEEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCeEEEEEeCCCCCCc-cCHHHHHHHhCccccccceeEEEee
Q 028776 88 YYEEAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYLDLKKLDERVCMFEAV 165 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (204)
.+.++|.+++|+|+.+++.+... ..|+..+ .. .++|+++|+||+|+.+. ....+....+. ..+.+++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALYR-----AIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHH-----HCCCeEEEE
Confidence 46889999999999988766554 4554443 33 46899999999999632 11222223222 234689999
Q ss_pred cccCCCChHHHHHHHH
Q 028776 166 SGYDGFGIKESVEWLV 181 (204)
Q Consensus 166 Sa~~~~~v~~l~~~i~ 181 (204)
||+++.|++++++.+.
T Consensus 148 SA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 148 SAKEGEGLDELKPLLA 163 (298)
T ss_pred eCCCCccHHHHHhhcc
Confidence 9999999999998874
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.3e-08 Score=76.17 Aligned_cols=127 Identities=18% Similarity=0.293 Sum_probs=72.7
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhh--ccCC-CCCCCCccccccceeeeEEEE--eC--cEEEEEEcCCCc-------
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSV--YSNV-EGLPPDRIVPTVGLNIGRIEV--SN--SKLVFWDLGGQP------- 79 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~D~~g~~------- 79 (204)
..-.|++.++|+.|.|||||+|+|+.. .... ..........+..+....... ++ .+++++||||-.
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 345699999999999999999998654 1110 011122222233443333222 33 467889999921
Q ss_pred -------chHHHHHHhc-----------c--cCCEEEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCeEEEEEeCCCCC
Q 028776 80 -------GLRSIWEKYY-----------E--EAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 80 -------~~~~~~~~~~-----------~--~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 138 (204)
........++ . .+|+++|.+...... +..+. ..+..+. ..+.+|.|+.|+|..
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~-----~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS-----KKVNLIPVIAKADTL 171 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh-----ccccccceeeccccC
Confidence 1122222332 1 478999999876432 12222 2222332 468999999999997
Q ss_pred CccCHHHH
Q 028776 139 DAVSADEL 146 (204)
Q Consensus 139 ~~~~~~~~ 146 (204)
........
T Consensus 172 T~~El~~~ 179 (366)
T KOG2655|consen 172 TKDELNQF 179 (366)
T ss_pred CHHHHHHH
Confidence 74443333
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.5e-07 Score=73.06 Aligned_cols=117 Identities=21% Similarity=0.309 Sum_probs=76.8
Q ss_pred EEEEEEcCC-------------CcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCC
Q 028776 69 KLVFWDLGG-------------QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135 (204)
Q Consensus 69 ~~~~~D~~g-------------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 135 (204)
+..++|.|| .+....+...++.+..+||+|+.-.. .+.-......+...+...+...|+|++|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 578899999 23344566678899999999987554 34555666677777776789999999999
Q ss_pred CCCC--ccCHHHHHHHhCccccccceeEEEeecccCCCChHHHHHHHHHHHHhchh
Q 028776 136 DLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 136 Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~~ 189 (204)
|+.+ -.+.+.++..+.-..+.-...-|+.+-.-.|. -.+-.+.|.++=++.-.
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGn-ssdSIdaIR~YEE~FF~ 544 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGN-SSESIEAIREYEEEFFQ 544 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCC-cchhHHHHHHHHHHHhh
Confidence 9987 35677888887633333334445544333332 34445555554444433
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=75.67 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=93.8
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCC----------CcchHH
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRS 83 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~ 83 (204)
.+..+.+++.|..|+|||+|++.+.......... ......|..++.. .-+-.+.++|.|| .+++..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~-k~K~g~Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTS-KSKNGKTQAINHF---HVGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhc-CCCCccceeeeee---eccceEEEEecCCcccccCCccCcchHhH
Confidence 4667999999999999999999985432211111 1011222222211 1244678999999 345555
Q ss_pred HHHHhccc---CCEEEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccC------HHHHHHHhC--
Q 028776 84 IWEKYYEE---AHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS------ADELARYLD-- 151 (204)
Q Consensus 84 ~~~~~~~~---~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~~~~~-- 151 (204)
....++.. --.+.+++|++-+- ..+... -+++.. -+.|..+|+||||...... ...++..++
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~---i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPE---IAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHH---HHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 55555533 33456666776431 112211 122222 4799999999999976322 111111111
Q ss_pred ccccccceeEEEeecccCCCChHHHHHHHHHHH
Q 028776 152 LKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 152 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
.........|++.+|+.++.|.++|+-++.+..
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhhhh
Confidence 111234556788999999999999988877643
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=68.95 Aligned_cols=133 Identities=20% Similarity=0.272 Sum_probs=76.4
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhh-ccCCC--CCCCCccccccceeee--EEEEeCc--EEEEEEcCCC---cchH
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSV-YSNVE--GLPPDRIVPTVGLNIG--RIEVSNS--KLVFWDLGGQ---PGLR 82 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~-~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~D~~g~---~~~~ 82 (204)
+..=.|+|.|+|..|.||||+++.+... ..... ......+..|..+... .+..+++ +++++||||- ....
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence 4556899999999999999999998432 22211 2223334444443322 3444444 5788999991 1111
Q ss_pred HHHH-----------Hhc--------------ccCCEEEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCeEEEEEeCCC
Q 028776 83 SIWE-----------KYY--------------EEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQD 136 (204)
Q Consensus 83 ~~~~-----------~~~--------------~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D 136 (204)
++|+ +++ ...+++++.+..+..+ +..+. +.+..+. .-..+|.|+.|+|
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt-----~vvNvvPVIakaD 195 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLT-----EVVNVVPVIAKAD 195 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHh-----hhheeeeeEeecc
Confidence 2222 222 1367888888877442 22221 2222222 2368899999999
Q ss_pred CCCccCHHHHHHHhC
Q 028776 137 LPDAVSADELARYLD 151 (204)
Q Consensus 137 l~~~~~~~~~~~~~~ 151 (204)
...-....+..+...
T Consensus 196 tlTleEr~~FkqrI~ 210 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIR 210 (336)
T ss_pred cccHHHHHHHHHHHH
Confidence 876555555555444
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-09 Score=84.52 Aligned_cols=165 Identities=21% Similarity=0.226 Sum_probs=105.1
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCc---------------------------cccccceeeeEEEEe
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR---------------------------IVPTVGLNIGRIEVS 66 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~ 66 (204)
.+.+.+++++|+..+||||+-.++.........+..+. -..++....-.+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 46789999999999999999877732221111111111 112222222234445
Q ss_pred CcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCC---CHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC----
Q 028776 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD---- 139 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~---- 139 (204)
..++.+.|+||+..+-..+.....++|..++|+.+...+ .|+.-.+...+........-...|+++||+|-..
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 678999999999999988888889999999999996432 2333222222332222224578999999999865
Q ss_pred ccCHHHHHHHhC----cccc-ccceeEEEeecccCCCChHHHHH
Q 028776 140 AVSADELARYLD----LKKL-DERVCMFEAVSGYDGFGIKESVE 178 (204)
Q Consensus 140 ~~~~~~~~~~~~----~~~~-~~~~~~~~~~Sa~~~~~v~~l~~ 178 (204)
....++....+. ...+ ......++++|..+|.++.+...
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 223344444333 1111 23567799999999999987664
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-08 Score=70.73 Aligned_cols=98 Identities=22% Similarity=0.294 Sum_probs=64.8
Q ss_pred CCC-cchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccc
Q 028776 76 GGQ-PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK 154 (204)
Q Consensus 76 ~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 154 (204)
||+ .+..+.....++.+|.+++|+|+.++...... . +.... .+.|+++|+||+|+.+.....+..+.+.
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~--- 72 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE--- 72 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH---
Confidence 443 34456677788999999999999876432211 1 11111 3579999999999964322122222222
Q ss_pred cccceeEEEeecccCCCChHHHHHHHHHHHH
Q 028776 155 LDERVCMFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 155 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~ 185 (204)
.....++.+|++++.|++++.+.+.+.+.
T Consensus 73 --~~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 73 --SKGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred --hcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 12345789999999999999999988764
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.7e-08 Score=76.84 Aligned_cols=90 Identities=21% Similarity=0.121 Sum_probs=65.4
Q ss_pred hcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecc
Q 028776 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
+..++|.+++|++...+.++..+..|+... .. .++|+++|+||+|+............... +...+.+++++||
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA 190 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSS 190 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeC
Confidence 457899999999998777888888887633 22 46899999999999764322222222221 1123468999999
Q ss_pred cCCCChHHHHHHHHHH
Q 028776 168 YDGFGIKESVEWLVEV 183 (204)
Q Consensus 168 ~~~~~v~~l~~~i~~~ 183 (204)
+++.|++++++.+...
T Consensus 191 ~tg~GideL~~~L~~k 206 (347)
T PRK12288 191 HTGEGLEELEAALTGR 206 (347)
T ss_pred CCCcCHHHHHHHHhhC
Confidence 9999999999988653
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.3e-08 Score=75.87 Aligned_cols=162 Identities=22% Similarity=0.282 Sum_probs=97.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhh-ccCCCCCCCCcc----------------ccccceeee--EEEE------------
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSV-YSNVEGLPPDRI----------------VPTVGLNIG--RIEV------------ 65 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~-~~~~~~~~~~~~----------------~~~~~~~~~--~~~~------------ 65 (204)
..+++++|...+|||||+..|+.- ..+-.+..+..+ ...++++.. .+++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 489999999999999999888421 111111111111 011111111 0111
Q ss_pred eCcEEEEEEcCCCcchHHHHHHhccc--CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCH
Q 028776 66 SNSKLVFWDLGGQPGLRSIWEKYYEE--AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA 143 (204)
Q Consensus 66 ~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 143 (204)
.+.-+.++|.+|+.+|.....+.+.. .|..++|+.++....... .+.+. ++.. -++|+.++++|+|+.+....
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLg-l~~A---L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLG-LIAA---LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHH-HHHH---hCCCeEEEEEeeccccchhH
Confidence 13357899999999998877766654 789999999987643211 11111 1111 37999999999999875433
Q ss_pred ----HHHHHHhCc---------------------cccccceeEEEeecccCCCChHHHHHHHHHHH
Q 028776 144 ----DELARYLDL---------------------KKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 144 ----~~~~~~~~~---------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
.++...+.. ........|++.+|+-.|+|++-+. .+...+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~-~fLn~L 386 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR-TFLNCL 386 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH-HHHhhc
Confidence 222222221 1113467899999999999988443 333333
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-08 Score=68.63 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=55.7
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHH-HHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALE-KVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
|.+++|+|+.++.+... .++. ..+.. .++|+|+|+||+|+.......+....+. ......++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence 78999999998754432 2222 22222 4689999999999965322222221221 1123568899999999
Q ss_pred ChHHHHHHHHHHHH
Q 028776 172 GIKESVEWLVEVME 185 (204)
Q Consensus 172 ~v~~l~~~i~~~i~ 185 (204)
|++++++.+.+...
T Consensus 72 gi~~L~~~i~~~~~ 85 (155)
T cd01849 72 GIEKKESAFTKQTN 85 (155)
T ss_pred ChhhHHHHHHHHhH
Confidence 99999999987654
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-08 Score=75.98 Aligned_cols=102 Identities=21% Similarity=0.330 Sum_probs=68.9
Q ss_pred cCCCc-chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcc
Q 028776 75 LGGQP-GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLK 153 (204)
Q Consensus 75 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 153 (204)
.|||- ...+.+...++.+|++++|+|+..+.+... ..+..++ .++|+|+|+||+|+.+........+.+.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~-- 74 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE-- 74 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH--
Confidence 35543 445567778899999999999987744322 1222222 2579999999999965322223323332
Q ss_pred ccccceeEEEeecccCCCChHHHHHHHHHHHHhch
Q 028776 154 KLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 154 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~ 188 (204)
..+.+++.+|++++.|++++.+.+.+.+.+..
T Consensus 75 ---~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 75 ---EKGIKALAINAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred ---HcCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence 12346889999999999999999988876543
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-07 Score=77.44 Aligned_cols=141 Identities=17% Similarity=0.191 Sum_probs=86.9
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCE
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
.+.+-++|+|++|+||||||+.|...+... .-..+.-++. .+.....++++..+|.+ ...+....+-+|.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~---ti~~i~GPiT----vvsgK~RRiTflEcp~D---l~~miDvaKIaDL 136 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ---TIDEIRGPIT----VVSGKTRRITFLECPSD---LHQMIDVAKIADL 136 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHh---hhhccCCceE----EeecceeEEEEEeChHH---HHHHHhHHHhhhe
Confidence 466788899999999999999996654421 1111111111 24556678999999932 3455566788999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC-ccCHHHHHHHhCccc--cccceeEEEeecccC
Q 028776 95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKK--LDERVCMFEAVSGYD 169 (204)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~ 169 (204)
+++++|.+-. |+---..+..++...+ -..++-|+|..|+.. ..........+.-.+ .-.++..++.+|.-.
T Consensus 137 VlLlIdgnfG--fEMETmEFLnil~~HG--mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGNFG--FEMETMEFLNILISHG--MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccccC--ceehHHHHHHHHhhcC--CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9999999865 3222223334444432 245677889999987 444555665554111 112455566666544
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-08 Score=69.45 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=35.5
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 77 (204)
...++|+++|.+|+|||||+|+|.+......+... ..|..... +.. +..+.++||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~---g~T~~~~~--~~~-~~~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP---GETKVWQY--ITL-MKRIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC---CeeEeEEE--EEc-CCCEEEEECcC
Confidence 35788999999999999999999763322111111 11222211 221 23588999998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.6e-08 Score=75.03 Aligned_cols=81 Identities=23% Similarity=0.363 Sum_probs=56.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhcc-CCCCCCCCccccccceeeeEEEEeC-----------------cEEEEEEcCCCc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQP 79 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~ 79 (204)
++++++|.|++|||||++.|++... ....+...+..+ ..+.+...+ ..+.+.|.||..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p----~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv 78 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEP----NAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLV 78 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCC----ceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccc
Confidence 7899999999999999999987544 322222222333 333333332 368899999942
Q ss_pred -------chHHHHHHhcccCCEEEEEEeCC
Q 028776 80 -------GLRSIWEKYYEEAHAVVFVIDAA 102 (204)
Q Consensus 80 -------~~~~~~~~~~~~~d~ii~v~d~~ 102 (204)
..+..+...++.+|++++|+++.
T Consensus 79 ~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 79 GGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 24456677789999999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-08 Score=83.12 Aligned_cols=121 Identities=15% Similarity=0.146 Sum_probs=79.6
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCC----------CCccccccceeeeEEEE--eCcEEEEEEcCCCcc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDRIVPTVGLNIGRIEV--SNSKLVFWDLGGQPG 80 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~ 80 (204)
.+...-+++++.+...|||||+..|.....-...+. .++...-+.+...-++. .+..++++|+|||-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 345667899999999999999999943211111110 11111122222222333 677899999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 138 (204)
|........+-+|++++++|+..+-- .+.. .+++++...+...++|+||+|..
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~-~qt~----~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVC-SQTY----AVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccc-hhHH----HHHHHHHHccCceEEEEehhhhH
Confidence 99999998889999999999975421 1112 22222222578899999999954
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.5e-08 Score=69.54 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=36.4
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 77 (204)
...++++++|.+|+|||||+|++++......+. ....|..... +.. +.++.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~---~pg~T~~~~~--~~~-~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGA---TPGVTKSMQE--VHL-DKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecC---CCCeEcceEE--EEe-CCCEEEEECcC
Confidence 345899999999999999999997643321111 1112222222 222 34689999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.6e-07 Score=70.19 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=72.3
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee---------------EEE----Ee---------
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---------------RIE----VS--------- 66 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~----~~--------- 66 (204)
...+=|+++|+-..||||+|+.|+....+..... ..+|...-.. .++ +.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riG---pEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af 132 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIG---PEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF 132 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccC---CCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence 3567899999999999999999965433211111 1111111000 000 00
Q ss_pred -------------CcEEEEEEcCCCcch-----------HHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCC
Q 028776 67 -------------NSKLVFWDLGGQPGL-----------RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 122 (204)
Q Consensus 67 -------------~~~~~~~D~~g~~~~-----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 122 (204)
--+++++||||.-+. .....=+...+|.|++++|+..-+--++....+.++..+
T Consensus 133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~-- 210 (532)
T KOG1954|consen 133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH-- 210 (532)
T ss_pred HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--
Confidence 114889999994222 223334557899999999998654334444444444332
Q ss_pred CCCCeEEEEEeCCCCCCccCH
Q 028776 123 LQGAPLLILANKQDLPDAVSA 143 (204)
Q Consensus 123 ~~~~p~ivv~nK~Dl~~~~~~ 143 (204)
.-.+=||+||+|..+....
T Consensus 211 --EdkiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 211 --EDKIRVVLNKADQVDTQQL 229 (532)
T ss_pred --cceeEEEeccccccCHHHH
Confidence 4466788999998765443
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.65 E-value=8e-08 Score=76.18 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=66.0
Q ss_pred CcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC-ccCHHHHHHHhCccc--
Q 028776 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKK-- 154 (204)
Q Consensus 78 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~-- 154 (204)
++++......+.+.++++++|+|+.+... .|...+.... .+.|+++|+||+|+.. ....+++..++....
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 56777788888889999999999976531 1222222222 2679999999999975 333444444332111
Q ss_pred cccceeEEEeecccCCCChHHHHHHHHHH
Q 028776 155 LDERVCMFEAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 155 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
.......++.+||++|.|++++++.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 11111248899999999999999999765
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=68.66 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
+..+++++|.+|+|||||+|+|.+..
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999997643
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.7e-08 Score=78.85 Aligned_cols=132 Identities=18% Similarity=0.123 Sum_probs=90.2
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCC----CCCCcc----------ccccceeeeEEEEeCcEEEEEEcCCCcc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRI----------VPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~----------~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
.+.-+|.+.-+-.+||||+.++.+........ ...... ..|+........+.+.++.++|||||.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 35568999999999999999998432221111 000110 1122222233556788999999999999
Q ss_pred hHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhC
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 151 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 151 (204)
|--.....++..|+.|+++|+...- -.+....|++...+ ++|.|..+||+|........-+.....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~ry----~vP~i~FiNKmDRmGa~~~~~l~~i~~ 182 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKRY----NVPRICFINKMDRMGASPFRTLNQIRT 182 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHhc----CCCeEEEEehhhhcCCChHHHHHHHHh
Confidence 9888888999999999999986441 13445566666554 789999999999987665555554444
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.1e-08 Score=73.93 Aligned_cols=102 Identities=22% Similarity=0.346 Sum_probs=69.0
Q ss_pred cCCCc-chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCcc
Q 028776 75 LGGQP-GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLK 153 (204)
Q Consensus 75 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 153 (204)
.|||- +..+.....++.+|++++|+|+.++.+... .++...+ .+.|+++|+||+|+.+....+...+++.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence 46643 445567778899999999999987744322 2222332 2579999999999964322223333332
Q ss_pred ccccceeEEEeecccCCCChHHHHHHHHHHHHhch
Q 028776 154 KLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 154 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~~~ 188 (204)
..+.+++.+|++++.|++++.+.+.+.+.+..
T Consensus 78 ---~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~ 109 (287)
T PRK09563 78 ---EQGIKALAINAKKGQGVKKILKAAKKLLKEKN 109 (287)
T ss_pred ---HcCCeEEEEECCCcccHHHHHHHHHHHHHHHH
Confidence 11356789999999999999999988876543
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=65.37 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=51.3
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCHH--HHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeE
Q 028776 84 IWEKYYEEAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM 161 (204)
Q Consensus 84 ~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (204)
.....++.+|++++|+|+.++.+.. .+..++. ... .++|+++|+||+|+.++....+....+. ..+..
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~----~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~ 73 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVK----EVD-PRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIV 73 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHH----hcc-CCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCe
Confidence 3455678899999999999876533 2333332 211 4689999999999965433333334333 22356
Q ss_pred EEeecccCCCC
Q 028776 162 FEAVSGYDGFG 172 (204)
Q Consensus 162 ~~~~Sa~~~~~ 172 (204)
++++||+++.+
T Consensus 74 ii~iSa~~~~~ 84 (141)
T cd01857 74 VVFFSALKENA 84 (141)
T ss_pred EEEEEecCCCc
Confidence 88899988753
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-08 Score=78.79 Aligned_cols=131 Identities=21% Similarity=0.185 Sum_probs=88.2
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCC----CCCcc----------ccccceeeeEEEEeCcEEEEEEcCCCcch
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRI----------VPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (204)
+--+|.++.+..+||||...+++..-...... ...++ ..|+......+++.+.++.++||||+.++
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 34589999999999999999984322111100 00111 12333333457788999999999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc---cCHHHHHHHhC
Q 028776 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---VSADELARYLD 151 (204)
Q Consensus 82 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~ 151 (204)
.-..+..++..|+++.|+|++-.-. .+....| .+..+-++|-+.++||+|.... ...+.+.+.++
T Consensus 116 ~leverclrvldgavav~dasagve-~qtltvw----rqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVE-AQTLTVW----RQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLG 183 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcc-cceeeee----hhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence 8888888999999999999985421 1222223 3344457999999999999863 33455555554
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.8e-08 Score=65.92 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=34.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCC
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 78 (204)
+++++|.+|+|||||+|++++..... .......+.... .+..+. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~---~~~~~~~~~~~~--~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS---VSATPGKTKHFQ--TIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee---eCCCCCcccceE--EEEeCC-CEEEEECCCc
Confidence 89999999999999999997543221 111111222221 222322 6899999994
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-07 Score=67.01 Aligned_cols=116 Identities=19% Similarity=0.329 Sum_probs=70.0
Q ss_pred CcEEEEEEcCCCcchHH---HHHHh---ccc---CCEEEEEEeCCCC-CC--H-HHHHHHHHHHHhcCCCCCCeEEEEEe
Q 028776 67 NSKLVFWDLGGQPGLRS---IWEKY---YEE---AHAVVFVIDAACP-SR--F-EDSKTALEKVLRNEDLQGAPLLILAN 133 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~---~~~~~---~~~---~d~ii~v~d~~~~-~s--~-~~~~~~~~~~~~~~~~~~~p~ivv~n 133 (204)
+-.+.++|+|||..... .++.+ +++ --++++++|+.-- ++ | .+....+...+. -..|.|=|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhh
Confidence 34688999999754422 12222 222 2367788887521 22 2 222223333333 3689999999
Q ss_pred CCCCCCccCHHHHHHHhCcccc---------------------------ccceeEEEeecccCCCChHHHHHHHHHHHHh
Q 028776 134 KQDLPDAVSADELARYLDLKKL---------------------------DERVCMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 134 K~Dl~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i~~ 186 (204)
|+|+......+++..+++--.. ...-+.|++.-..+.+.++.++..|..+++-
T Consensus 173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy 252 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQY 252 (273)
T ss_pred HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHh
Confidence 9999988777777777751000 1234467777777777788888887777753
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-07 Score=70.62 Aligned_cols=86 Identities=23% Similarity=0.367 Sum_probs=59.0
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE-----------------eCcEEEEEEc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-----------------SNSKLVFWDL 75 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~D~ 75 (204)
+..++++++|+|.|++|||||.|.|+...........- |+..+..++.. -...++++|+
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~----TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DI 91 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFC----TIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDI 91 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcc----eeccccceeecCchHHHHHHHhcCCcceeeeeEEEEee
Confidence 45678999999999999999999997644332222222 22222222221 2346889999
Q ss_pred CC-------CcchHHHHHHhcccCCEEEEEEeCC
Q 028776 76 GG-------QPGLRSIWEKYYEEAHAVVFVIDAA 102 (204)
Q Consensus 76 ~g-------~~~~~~~~~~~~~~~d~ii~v~d~~ 102 (204)
+| ....++.+..-++.+|+++.|+++-
T Consensus 92 AGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 92 AGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 98 3445666777788999999999985
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-07 Score=72.01 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=38.1
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 78 (204)
....+++++|.||+||||+||+|.+......+..+ ..|.+..... . +-.+.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P---G~Tk~~q~i~--~-~~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP---GTTKGIQWIK--L-DDGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC---ceecceEEEE--c-CCCeEEecCCCc
Confidence 45689999999999999999999775542222211 2333322222 2 224899999993
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-06 Score=76.81 Aligned_cols=116 Identities=19% Similarity=0.205 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCC----CCCCccccccceeeeEEEEeCcEEEEEEcCC----Cc----chHHHH
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----QP----GLRSIW 85 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~----~~~~~~ 85 (204)
+=.+|+|++|+||||++..- +...+... ........+..++.. + .-+..++||+| ++ .....|
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww---f-~~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW---F-TDEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE---e-cCCEEEEcCCCccccCCCcccccHHHH
Confidence 44689999999999999987 21111111 111112233333333 1 22456999999 21 223344
Q ss_pred HHhc---------ccCCEEEEEEeCCCCC--CHH-------HHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 86 EKYY---------EEAHAVVFVIDAACPS--RFE-------DSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 86 ~~~~---------~~~d~ii~v~d~~~~~--s~~-------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
..++ +..+|||+++|+.+-- +-+ .+...+..+....+ ...|+.+++||+|++.
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhc
Confidence 4443 2489999999997431 111 22333344443333 5789999999999975
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=66.16 Aligned_cols=146 Identities=20% Similarity=0.214 Sum_probs=77.8
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCC----CCCcc-----------ccccceeeeEE-----------------
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRI-----------VPTVGLNIGRI----------------- 63 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~----------------- 63 (204)
+.-.++++|++|+||||++..|.......... ..+.+ ....++.+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999995444322110 00000 00011111100
Q ss_pred EEeCcEEEEEEcCCCcchH----HHHHHhc--------ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEE
Q 028776 64 EVSNSKLVFWDLGGQPGLR----SIWEKYY--------EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131 (204)
Q Consensus 64 ~~~~~~~~~~D~~g~~~~~----~~~~~~~--------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 131 (204)
...+..+.++||||..... .....+. ...+..++|+|++... ..+.+ ...+... -.+.-++
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEE
Confidence 1135679999999953221 1122211 2478899999998542 23322 2222221 1355799
Q ss_pred EeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHHHH
Q 028776 132 ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 177 (204)
Q Consensus 132 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 177 (204)
+||.|....-. .+..... ..+.|+..++ .|++++++-
T Consensus 266 lTKlD~t~~~G--~~l~~~~-----~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGG--VVFAIAD-----ELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCcc--HHHHHHH-----HHCCCEEEEe--CCCChhhCc
Confidence 99999654221 2222221 2245677776 677777664
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-07 Score=63.86 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=36.7
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 77 (204)
....+++++|.+|+|||||+|++.+......+... ..|..... ... +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~---~~t~~~~~--~~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP---GTTTSQQE--VKL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCC---CcccceEE--EEe-cCCEEEEECCC
Confidence 46789999999999999999999764432211111 11222212 222 34689999998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-06 Score=60.07 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=37.6
Q ss_pred CcEEEEEEcCCCcchHHHHHH--------hcccCCEEEEEEeCCCCCCH-HHHHHHHHHHHhcCCCCCCeEEEEEeCCCC
Q 028776 67 NSKLVFWDLGGQPGLRSIWEK--------YYEEAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLILANKQDL 137 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 137 (204)
..+..++||+|.......... ..-..|.+++++|+.+.... .....+..++.. .-++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence 356788999997554443332 12348999999998643221 111222223322 23789999996
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.1e-06 Score=61.25 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=54.2
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEE---eCcEEEEEEcCCCcchH------HH
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLR------SI 84 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~------~~ 84 (204)
..+..-|+|+|++++|||+|+|+|.+... ...........|.++-....+. .+..+.++||+|..+.. ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~-~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLS-GFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCC-CeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence 34567799999999999999999976410 0111111122334443333333 35789999999943321 12
Q ss_pred HHHhccc--CCEEEEEEeCCCC
Q 028776 85 WEKYYEE--AHAVVFVIDAACP 104 (204)
Q Consensus 85 ~~~~~~~--~d~ii~v~d~~~~ 104 (204)
....+.. ++.+|+..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 2223333 8899988888654
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-05 Score=64.05 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=23.9
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHH
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLK 38 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~ 38 (204)
|....+-|+|+|+..+||||||+++.
T Consensus 13 RT~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 13 RTGGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred hcCCceEEEeecCcccCchhHHHHHH
Confidence 57788999999999999999999994
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.44 E-value=5e-07 Score=69.20 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=36.8
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 78 (204)
...++++++|.+|+|||||+|+|.+......+. ....|..... +.. +.++.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~---~~g~T~~~~~--~~~-~~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN---RPGVTKGQQW--IKL-SDGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC---CCCeecceEE--EEe-CCCEEEEECCCc
Confidence 356899999999999999999997543211111 1112222222 222 236899999995
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=67.19 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=54.4
Q ss_pred EEEEEEcCCCc---chHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC--ccCH
Q 028776 69 KLVFWDLGGQP---GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSA 143 (204)
Q Consensus 69 ~~~~~D~~g~~---~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~ 143 (204)
.+.++|.||-. ....-+......+|++|+|..+.+. +...+. +++......+..+.++.||.|... +...
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek---~Ff~~vs~~KpniFIlnnkwDasase~ec~ 281 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEK---QFFHKVSEEKPNIFILNNKWDASASEPECK 281 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHH---HHHHHhhccCCcEEEEechhhhhcccHHHH
Confidence 57889999943 3344455666789999999988764 233322 333333323556666668889865 2233
Q ss_pred HHHHHHhCccc---cccceeEEEeecccC
Q 028776 144 DELARYLDLKK---LDERVCMFEAVSGYD 169 (204)
Q Consensus 144 ~~~~~~~~~~~---~~~~~~~~~~~Sa~~ 169 (204)
+++.....+.. .....-.++.+|++.
T Consensus 282 e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 282 EDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 44444433211 122333566777443
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-07 Score=64.05 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=31.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcc---cc-ccceeeeEEEEeCcEEEEEEcCCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VP-TVGLNIGRIEVSNSKLVFWDLGGQ 78 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~D~~g~ 78 (204)
-.++++|+.|||||||+|.|.+......+...... .+ |..... +.. .....++||||.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l--~~l-~~g~~iIDTPGf 97 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHREL--FPL-PDGGYIIDTPGF 97 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEE--EEE-TTSEEEECSHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeE--Eec-CCCcEEEECCCC
Confidence 67899999999999999999764322222111111 11 111112 222 235689999994
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.4e-06 Score=66.86 Aligned_cols=146 Identities=17% Similarity=0.149 Sum_probs=77.7
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCC----CCCCcc-----------ccccceeeeE-----------------E
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRI-----------VPTVGLNIGR-----------------I 63 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~-----------~~~~~~~~~~-----------------~ 63 (204)
+...|+++|++|+||||++..+......... ...+.+ ....+..+.. .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 3578999999999999988888533221110 000110 0011111100 0
Q ss_pred EEeCcEEEEEEcCCCcch----HHHHHHhc--ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCC
Q 028776 64 EVSNSKLVFWDLGGQPGL----RSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137 (204)
Q Consensus 64 ~~~~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 137 (204)
...+..+.++||+|.... ......+. ...|.+++|+|+.... ........+... -..--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~----~~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA----VGIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc----CCCCEEEEeeecC
Confidence 112457899999995432 22222222 3578999999997542 222222233222 1245788999998
Q ss_pred CCccCH-HHHHHHhCccccccceeEEEeecccCCCChHHHHH
Q 028776 138 PDAVSA-DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178 (204)
Q Consensus 138 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 178 (204)
...... -.+.. ....|+..++ .|++++++..
T Consensus 292 ~~~~G~~ls~~~--------~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGGAALSIAY--------VIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCccHHHHHHH--------HHCcCEEEEe--CCCChhhccc
Confidence 653221 11111 1235666665 6888877654
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.2e-07 Score=70.48 Aligned_cols=127 Identities=11% Similarity=0.126 Sum_probs=68.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCC--CCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHH--------
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE-------- 86 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------- 86 (204)
..++.++|.+|+|||||+|+|++....... ........|.... .+.. +..+.++||||.........
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPL-DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEe-CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 369999999999999999999764331111 1111112222222 2222 23467999999543322111
Q ss_pred Hh--cccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhC
Q 028776 87 KY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 151 (204)
Q Consensus 87 ~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 151 (204)
.. -+....+.++++..+.-.+.++. ++ +++ .....++.+.+++.+..+....+...+.+.
T Consensus 231 ~~~~~~~i~~~~~~l~~~q~~~~ggl~-~~-d~~---~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~ 292 (360)
T TIGR03597 231 YITPKKEIKPKTYQLNPNQTLFLGGLA-RF-DYL---KGEKTSFTFYVSNELNIHRTKLENADELYN 292 (360)
T ss_pred hcCCCCccCceEEEeCCCCEEEEceEE-EE-EEe---cCCceEEEEEccCCceeEeechhhhHHHHH
Confidence 11 13366777877766532222211 11 111 114567888889888877545444444443
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-05 Score=61.80 Aligned_cols=146 Identities=17% Similarity=0.159 Sum_probs=77.2
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCC----CCCcc-----------ccccceeeeE-----------------E
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRI-----------VPTVGLNIGR-----------------I 63 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~-----------~~~~~~~~~~-----------------~ 63 (204)
+.-.|+++|++|+||||++..|.......... ..+.+ ....+..+.. .
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 34578899999999999998884333211110 00000 0001111100 0
Q ss_pred EEeCcEEEEEEcCCCcchHHH----HHH---hc-----ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEE
Q 028776 64 EVSNSKLVFWDLGGQPGLRSI----WEK---YY-----EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131 (204)
Q Consensus 64 ~~~~~~~~~~D~~g~~~~~~~----~~~---~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 131 (204)
...+..+.++||||....... ... .. ..+|.+++|+|+.-. .+.+ .....+.... .+.=++
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~~----~~~g~I 223 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEAV----GLTGII 223 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhhC----CCCEEE
Confidence 013568899999996443222 111 11 138999999999743 2222 2333333221 256789
Q ss_pred EeCCCCCCccC-HHHHHHHhCccccccceeEEEeecccCCCChHHHHH
Q 028776 132 ANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178 (204)
Q Consensus 132 ~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 178 (204)
+||.|...... .-.+... ...|+..++ .|++++++-.
T Consensus 224 lTKlDe~~~~G~~l~~~~~--------~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 224 LTKLDGTAKGGIILSIAYE--------LKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEccCCCCCccHHHHHHHH--------HCcCEEEEe--CCCChHhCcc
Confidence 99999865322 1122222 235666666 6777776643
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.1e-07 Score=63.46 Aligned_cols=58 Identities=22% Similarity=0.376 Sum_probs=35.9
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 78 (204)
...++++++|.+|+|||||++++.+...... ......|..... +..+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~---~~~~~~T~~~~~--~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV---GNKPGVTKGIQW--IKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee---cCCCCEEeeeEE--EEec-CCEEEEECCCC
Confidence 3457999999999999999999975322100 111112222222 2222 56899999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.9e-07 Score=71.17 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=35.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcc---c-cccceeeeEEEEeCcEEEEEEcCCCcch
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---V-PTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (204)
.++++|.+|||||||+|+|.+......+..+... . .|.....+.++. ...++||||...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~---~~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH---GGDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC---CCEEEECCCCCcc
Confidence 3799999999999999999654332222222111 1 122222222322 2359999997555
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.8e-07 Score=68.50 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=37.1
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 78 (204)
...++++++|.+|+|||||+|+|++......+ .....|..... +.. +..+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~---~~~g~T~~~~~--~~~-~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG---NRPGVTKAQQW--IKL-GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC---CCCCeEEEEEE--EEe-CCcEEEEECCCc
Confidence 45689999999999999999999764321111 11122222222 222 346899999994
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-05 Score=54.57 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=24.0
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhcc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~ 42 (204)
+..+||.+.|+|||||||++.++.+...
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 5678999999999999999999865443
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=65.95 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=35.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcc----ccccceeeeEEEEeCcEEEEEEcCCCc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI----VPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~ 79 (204)
-.++++|++|+|||||+|+|.+......+...... ..|.......+ . ...++||||..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~--~~~liDtPG~~ 182 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H--GGLIADTPGFN 182 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C--CcEEEeCCCcc
Confidence 47899999999999999999765433322222111 12222223222 2 23799999953
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=5e-07 Score=71.80 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=59.5
Q ss_pred cchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc-cCHHHHHHHhCccc--c
Q 028776 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYLDLKK--L 155 (204)
Q Consensus 79 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~--~ 155 (204)
+++...........+.+++|+|+.+... .|...+.... .+.|+++|+||+|+... ...+++..++.... .
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFNG-----SWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCCC-----chhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 3454544444333449999999977431 1222222221 26799999999999752 23334433322111 1
Q ss_pred ccceeEEEeecccCCCChHHHHHHHHHHH
Q 028776 156 DERVCMFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 156 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
......++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 11112578999999999999999997653
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=59.47 Aligned_cols=56 Identities=27% Similarity=0.391 Sum_probs=35.2
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-EEEEeCcEEEEEEcCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSNSKLVFWDLGG 77 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g 77 (204)
....+++++|.+|+||||+++++.+.... .+.++.+.+.. .....+..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSA-------STSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc-------ccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 35678999999999999999999643211 11112222211 1111234789999998
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.5e-06 Score=65.66 Aligned_cols=85 Identities=22% Similarity=0.232 Sum_probs=56.4
Q ss_pred hcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecc
Q 028776 88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
+..++|.+++|++++.+-....+..++... .. .++|.++|+||+|+.+. .++....+... ..+.+++.+|+
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a-~~---~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa 179 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALA-WE---SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSA 179 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHH-HH---cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEEC
Confidence 357899999999997433333333333332 22 36788999999999754 22222222211 34578899999
Q ss_pred cCCCChHHHHHHHH
Q 028776 168 YDGFGIKESVEWLV 181 (204)
Q Consensus 168 ~~~~~v~~l~~~i~ 181 (204)
+++.|+++|..++.
T Consensus 180 ~~g~gl~~L~~~L~ 193 (356)
T PRK01889 180 LDGEGLDVLAAWLS 193 (356)
T ss_pred CCCccHHHHHHHhh
Confidence 99999999998874
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=64.74 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=63.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCC----CCCCcc-----------ccccceeeeEEE-----------------
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRI-----------VPTVGLNIGRIE----------------- 64 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~-----------~~~~~~~~~~~~----------------- 64 (204)
.-.|+++|.+||||||++..|......... ...+.+ ....++.+....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 457899999999999999998532221110 001111 111111111110
Q ss_pred EeCcEEEEEEcCCCcchHH----HHHHh--cccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC
Q 028776 65 VSNSKLVFWDLGGQPGLRS----IWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 65 ~~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 138 (204)
..+.++.++||+|...... ....+ ...+|-+++|+|+.-...- ......+... -.+.-+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS----VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc----cCCcEEEEECccCC
Confidence 0256899999999543322 22222 2347899999999754221 2222222221 24667889999985
Q ss_pred C
Q 028776 139 D 139 (204)
Q Consensus 139 ~ 139 (204)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 4
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-06 Score=68.68 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~ 41 (204)
.++|+|++|+|||||+|+|.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 48999999999999999996543
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.9e-06 Score=67.01 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=67.1
Q ss_pred EEEEEEcCCCcchHHHHHHhccc--CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHH
Q 028776 69 KLVFWDLGGQPGLRSIWEKYYEE--AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADEL 146 (204)
Q Consensus 69 ~~~~~D~~g~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 146 (204)
-+.++|.+|++.|.......+.+ .|...+++-++-.- -.+-+.-..+... -..|+.+|++|+|+-...-.+|-
T Consensus 220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI--iGmTKEHLgLALa---L~VPVfvVVTKIDMCPANiLqEt 294 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI--IGMTKEHLGLALA---LHVPVFVVVTKIDMCPANILQET 294 (641)
T ss_pred eEEEEeccchhhhhheeeeccccCCCCceEEEecccccc--eeccHHhhhhhhh---hcCcEEEEEEeeccCcHHHHHHH
Confidence 36899999999998766555543 78888888887431 1111110111111 36899999999999664333332
Q ss_pred ----HHHhCcc---------------------ccccceeEEEeecccCCCChHHHHHHHHHHH
Q 028776 147 ----ARYLDLK---------------------KLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 147 ----~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~i 184 (204)
.+.+... +....-+|++.+|.-+|.|++ |+..+...+
T Consensus 295 mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNll 356 (641)
T KOG0463|consen 295 MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLL 356 (641)
T ss_pred HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHHhhc
Confidence 2222211 112355688999999999987 444444444
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.5e-06 Score=64.89 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=36.8
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcc----ccccceeeeEEEEeCcEEEEEEcCCCcch
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI----VPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (204)
..++++|++|+|||||+|.|.+......+...... ..|..... +.... ...++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEcCC-CCEEEECCCCCcc
Confidence 57999999999999999999765543333222111 11222211 22221 2368999998554
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.6e-06 Score=64.82 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=62.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCC------CCCccc-----------cccceeeeEE-----------EEeCc
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------PPDRIV-----------PTVGLNIGRI-----------EVSNS 68 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~------~~~~~~-----------~~~~~~~~~~-----------~~~~~ 68 (204)
.-.++++|++|+||||++..|........+. ..+.+. ...++..... ...+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4578999999999999999996543211110 001110 0011111111 12356
Q ss_pred EEEEEEcCCCcchHH----HHHHh--cccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCC----CeEEEEEeCCCCC
Q 028776 69 KLVFWDLGGQPGLRS----IWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG----APLLILANKQDLP 138 (204)
Q Consensus 69 ~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~----~p~ivv~nK~Dl~ 138 (204)
.+.++||+|...... ..... .....-.++|++++... +.+.+.+..+......+. ..-=+++||.|-.
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 899999999543322 22221 12345668999997642 233333333322211011 1235677999975
Q ss_pred C
Q 028776 139 D 139 (204)
Q Consensus 139 ~ 139 (204)
.
T Consensus 295 ~ 295 (374)
T PRK14722 295 S 295 (374)
T ss_pred C
Confidence 5
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.9e-06 Score=66.79 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhh
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~ 40 (204)
..++.++|.+|+|||||+|+|.+.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhh
Confidence 458999999999999999999753
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.1e-06 Score=63.30 Aligned_cols=121 Identities=20% Similarity=0.203 Sum_probs=67.3
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeC--cEEEEEEcCCC-------cch----
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQ-------PGL---- 81 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~~g~-------~~~---- 81 (204)
.=.++|+-+|.+|.|||||+..|.+..-...+.......-......+++...+ .++.++||.|- +++
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 34699999999999999999999765433333222221111222222233333 46788999981 111
Q ss_pred ---HHHHHHh-------------c--ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCc
Q 028776 82 ---RSIWEKY-------------Y--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (204)
Q Consensus 82 ---~~~~~~~-------------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 140 (204)
..++..+ + ...+++++.+..+... +..+... .......+..+|.++.|+|....
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~-LKslDLv----tmk~LdskVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHS-LKSLDLV----TMKKLDSKVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcc-hhHHHHH----HHHHHhhhhhhHHHHHHhhhhhH
Confidence 1222222 1 2367888888876532 2222111 11111246788999999998653
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-05 Score=54.58 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=35.8
Q ss_pred CcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCC
Q 028776 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 136 (204)
+..+.++||+|..... ...+..+|-++++....-.+.+.-. .-... ..--++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAI---KAGIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHh---hhhHh------hhcCEEEEeCCC
Confidence 5689999998854222 2467789999999877632221111 11222 234489999987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=58.94 Aligned_cols=69 Identities=25% Similarity=0.298 Sum_probs=38.1
Q ss_pred CcEEEEEEcCCCcch------HHHHHHhcccCCEEEE---EEeCC---CCCCHHH-HHHHHHHHHhcCCCCCCeEEEEEe
Q 028776 67 NSKLVFWDLGGQPGL------RSIWEKYYEEAHAVVF---VIDAA---CPSRFED-SKTALEKVLRNEDLQGAPLLILAN 133 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~------~~~~~~~~~~~d~ii~---v~d~~---~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~n 133 (204)
.-++.++|+|||-.+ ...+...++..|.-+. ++|+. +|.+|-- +.-.+..++. ...|-|=|+.
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvlS 171 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVLS 171 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhhh
Confidence 457899999996433 2223333444554444 44442 4443321 1122222222 4678899999
Q ss_pred CCCCCC
Q 028776 134 KQDLPD 139 (204)
Q Consensus 134 K~Dl~~ 139 (204)
|+|+..
T Consensus 172 K~Dl~~ 177 (290)
T KOG1533|consen 172 KADLLK 177 (290)
T ss_pred HhHHHH
Confidence 999976
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.6e-06 Score=62.52 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=42.4
Q ss_pred HHHHhhhc-CCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCC--CCccccccceeeeEEEEeCcEEEEEEcCC
Q 028776 6 YGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (204)
Q Consensus 6 ~~~~~~~~-~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 77 (204)
.++.+..+ ...++++.|+|.||+|||||+|++....-...+.. ......|..+....--.+...+.+.||||
T Consensus 131 ~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 131 EELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred HHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 34433434 45889999999999999999999854332222221 12222222222211112455688999999
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7e-06 Score=64.88 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=67.2
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeee-----------------E-----------EEEeC
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-----------------R-----------IEVSN 67 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-----------~~~~~ 67 (204)
+.-.|+++||+||||||.+..|...+.-..+..+-.+.++-.+..+ . ....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 3678999999999999999999655541122222222222222211 0 01135
Q ss_pred cEEEEEEcCCCcchH----HHHHHhccc--CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 68 SKLVFWDLGGQPGLR----SIWEKYYEE--AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 68 ~~~~~~D~~g~~~~~----~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
.++.++||.|..... ..+..++.. ..-+-+|++++-. ...+...+.++.... .-=+++||.|-..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~-----i~~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP-----IDGLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC-----cceeEEEcccccC
Confidence 689999999954332 233334333 3456677777654 355666665554321 2246789999654
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-06 Score=62.12 Aligned_cols=114 Identities=19% Similarity=0.164 Sum_probs=60.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCCC----CCCcc-----------ccccceeeeEE-----------------EEe
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRI-----------VPTVGLNIGRI-----------------EVS 66 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~-----------------~~~ 66 (204)
.|+++|++||||||.+-.|.......... ..+.+ -...++.+... ..+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 58999999999999999985444322100 00000 01111111111 112
Q ss_pred CcEEEEEEcCCCcchHH----HHHHhc--ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 67 NSKLVFWDLGGQPGLRS----IWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
+.++.++||+|...... .+..++ ...+-+++|++++... +.+. .+....... + +-=+++||.|...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~---~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEAF---G-IDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHHS---S-TCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhcc---c-CceEEEEeecCCC
Confidence 46799999999543322 222222 2478999999998652 2333 222332221 1 2246699999755
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=57.04 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=39.6
Q ss_pred CcEEEEEEcCCCcchH----HHHHHhc--ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 67 NSKLVFWDLGGQPGLR----SIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
+..+.++|++|..... ....... ...|.+++|+|+.... ........+.... + ..-++.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence 4568899999964322 2222222 2489999999986542 2333444443332 2 3567779999865
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.6e-05 Score=58.87 Aligned_cols=117 Identities=13% Similarity=0.181 Sum_probs=73.2
Q ss_pred hHHHHHHhhhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCC-----
Q 028776 3 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----- 77 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----- 77 (204)
..+..+..+.+..+.++++++|++|.|||++++++...+........ ....+..+.+|.
T Consensus 47 ~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~----------------~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 47 DRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA----------------ERIPVVYVQMPPEPDER 110 (302)
T ss_pred HHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC----------------ccccEEEEecCCCCChH
Confidence 45667777777888899999999999999999999875543221110 112344444443
Q ss_pred -------------------CcchHHHHHHhcccCCEEEEEEeCCCC---CCHHHHHHHHHHHHhcCCCCCCeEEEEEeCC
Q 028776 78 -------------------QPGLRSIWEKYYEEAHAVVFVIDAACP---SRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135 (204)
Q Consensus 78 -------------------~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 135 (204)
...........++....=++++|--+. .+.......++.+-.....-++|+|.|+++-
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 112223344567788899999996422 2334444444444333334679999999764
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.2e-05 Score=58.01 Aligned_cols=91 Identities=21% Similarity=0.143 Sum_probs=53.7
Q ss_pred CcEEEEEEcCCCcchHHHHHHhcc--------cCCEEEEEEeCCCCCCHHH-HHH-HHHHHHhcCCCCCCeEEEEEeCCC
Q 028776 67 NSKLVFWDLGGQPGLRSIWEKYYE--------EAHAVVFVIDAACPSRFED-SKT-ALEKVLRNEDLQGAPLLILANKQD 136 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~-~~~-~~~~~~~~~~~~~~p~ivv~nK~D 136 (204)
.....++.+.|..........+.. ..|++|-|+|+.+-..... ... ...++. .-=++++||.|
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-------~AD~ivlNK~D 156 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-------FADVIVLNKTD 156 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-------hCcEEEEeccc
Confidence 356778888886655444333322 3689999999986422111 111 122222 23399999999
Q ss_pred CCCccCHHHHHHHhCccccccceeEEEeecc
Q 028776 137 LPDAVSADELARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
+.++...+.+...+.... +..+++.+|.
T Consensus 157 lv~~~~l~~l~~~l~~ln---p~A~i~~~~~ 184 (323)
T COG0523 157 LVDAEELEALEARLRKLN---PRARIIETSY 184 (323)
T ss_pred CCCHHHHHHHHHHHHHhC---CCCeEEEccc
Confidence 988665555555554322 3456676665
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.7e-06 Score=65.26 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=57.7
Q ss_pred hhHHHHHHhhhcCCcccEEEEEcCCCCChHHHHHHHHhhccCCCCC-C-CCccccccceeeeEEEEeCcEEEEEEcCCCc
Q 028776 2 FSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-P-PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 79 (204)
.+|++.+-.+...++++-|+++|.||+||||+||+|.......-.. . ...+...+. -..++.++|+||.-
T Consensus 292 I~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt--------LmkrIfLIDcPGvV 363 (572)
T KOG2423|consen 292 IQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT--------LMKRIFLIDCPGVV 363 (572)
T ss_pred HHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH--------HHhceeEecCCCcc
Confidence 3567777667678899999999999999999999996443321111 1 111211111 14468899999942
Q ss_pred ch--HHHHHHhcccCCEEEEEEeCCCCC
Q 028776 80 GL--RSIWEKYYEEAHAVVFVIDAACPS 105 (204)
Q Consensus 80 ~~--~~~~~~~~~~~d~ii~v~d~~~~~ 105 (204)
.. .+...-.+ .++|=|-.+.+|+
T Consensus 364 yps~dset~ivL---kGvVRVenv~~pe 388 (572)
T KOG2423|consen 364 YPSSDSETDIVL---KGVVRVENVKNPE 388 (572)
T ss_pred CCCCCchHHHHh---hceeeeeecCCHH
Confidence 22 23333332 3667777777665
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.5e-06 Score=63.61 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 028776 19 HVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~ 39 (204)
..+++|+.|+|||||+|+|..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 679999999999999999954
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=62.36 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCcc----ccccceeeeEEEEeCcEEEEEEcCCCc
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI----VPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~ 79 (204)
...++++|++|+|||||+|+|.+......+...... ..|..... +.... ...++||||..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~--~~~~~-~~~~~DtpG~~ 227 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVEL--YDLPG-GGLLIDTPGFS 227 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEE--EEcCC-CcEEEECCCcC
Confidence 346899999999999999999765443322222110 11211122 22222 34789999964
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.4e-05 Score=61.55 Aligned_cols=117 Identities=19% Similarity=0.260 Sum_probs=62.5
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCC------CCCCccc-----------cccceeeeEEE-----------EeC
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------LPPDRIV-----------PTVGLNIGRIE-----------VSN 67 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~~~-----------~~~~~~~~~~~-----------~~~ 67 (204)
..-.|+|+|++|+||||++..|......... ...+.+. ...++.+.... ..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 4568899999999999999988543221100 0011110 11111111111 135
Q ss_pred cEEEEEEcCCCcchHHH----HHHhc-ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 68 SKLVFWDLGGQPGLRSI----WEKYY-EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 68 ~~~~~~D~~g~~~~~~~----~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
.++.++||+|....... ...+. ......++|++.+.. ...+...+..+.. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 67899999995433221 11110 112356777787642 3444444444332 246779999999754
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00016 Score=56.49 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=43.8
Q ss_pred cEEEEEEcCCCcchHHHHHHhcc--------cCCEEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCCCCeEEEEEeCCCCC
Q 028776 68 SKLVFWDLGGQPGLRSIWEKYYE--------EAHAVVFVIDAACPSRFE-DSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 68 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 138 (204)
....++.|.|..........+.. ..++++.|+|+.+..... .......++. .-=++++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-------~AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-------YADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-------hCCEEEEeccccC
Confidence 45678899997766554444321 258999999997532111 1111112222 2338999999998
Q ss_pred CccCHHHHHHHhC
Q 028776 139 DAVSADELARYLD 151 (204)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (204)
.+. +.+...+.
T Consensus 164 ~~~--~~~~~~l~ 174 (318)
T PRK11537 164 GEA--EKLRERLA 174 (318)
T ss_pred CHH--HHHHHHHH
Confidence 642 45555554
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.5e-05 Score=62.08 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=62.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCCC------CCCccc-----------cccceeeeE-----------EEEeCc
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------PPDRIV-----------PTVGLNIGR-----------IEVSNS 68 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~------~~~~~~-----------~~~~~~~~~-----------~~~~~~ 68 (204)
.-.++++|++|+||||++..|.+......+. ..+.+. ...++.... ....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 4589999999999999999886542110000 001100 011111110 112356
Q ss_pred EEEEEEcCCCcchH----HHHHHhc--ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 69 KLVFWDLGGQPGLR----SIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 69 ~~~~~D~~g~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
.+.++||+|..... .....+. ...+-.++|+|++-. ...+.+.+..+.. -..-=+++||.|-..
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAA 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCC
Confidence 78999999954322 2222221 224567899999843 2344444433321 124467889999755
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.5e-05 Score=57.06 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=42.5
Q ss_pred CcEEEEEEcCCCcchHHHH--HH---hcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCcc
Q 028776 67 NSKLVFWDLGGQPGLRSIW--EK---YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~--~~---~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 141 (204)
.....++.+.|........ .. ..-..+.+|.|+|+.+-.........+..-+.. -=++++||+|+.+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCChh
Confidence 3567788888844333321 11 112368999999996532222233333333333 239999999998754
Q ss_pred -CHHHHHHHhC
Q 028776 142 -SADELARYLD 151 (204)
Q Consensus 142 -~~~~~~~~~~ 151 (204)
..+.+.+.+.
T Consensus 158 ~~i~~~~~~ir 168 (178)
T PF02492_consen 158 QKIERVREMIR 168 (178)
T ss_dssp --HHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 3355555554
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.4e-06 Score=67.34 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=81.1
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCC----CCCC------Ccccc--ccceee----e------------EEEE
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----GLPP------DRIVP--TVGLNI----G------------RIEV 65 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----~~~~------~~~~~--~~~~~~----~------------~~~~ 65 (204)
.++.-++.++.+...|||||...|..+-.... +..+ ++... |+..+. . +-+.
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 44567889999999999999999942221111 1000 00000 111000 0 1122
Q ss_pred eCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC---ccC
Q 028776 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD---AVS 142 (204)
Q Consensus 66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~---~~~ 142 (204)
++.-++++|.||+-++.+.....++..|+.+.|+|.-+.--. +.+..+++.+. +.+.-++++||.|..- ..+
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~----ERIkPvlv~NK~DRAlLELq~~ 170 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIA----ERIKPVLVMNKMDRALLELQLS 170 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-chHHHHHHHHH----hhccceEEeehhhHHHHhhcCC
Confidence 456789999999999999999999999999999998754211 12233333332 4566688999999743 455
Q ss_pred HHHHHHHh
Q 028776 143 ADELARYL 150 (204)
Q Consensus 143 ~~~~~~~~ 150 (204)
.+++.+.+
T Consensus 171 ~EeLyqtf 178 (842)
T KOG0469|consen 171 QEELYQTF 178 (842)
T ss_pred HHHHHHHH
Confidence 55555444
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00017 Score=51.39 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhh
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~ 40 (204)
++|++.|++|+|||||+..+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999987543
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.7e-05 Score=60.53 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=62.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCCC----CCCCcc-----------ccccceeeeEEE--------------EeC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRI-----------VPTVGLNIGRIE--------------VSN 67 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~-----------~~~~~~~~~~~~--------------~~~ 67 (204)
...|+++|++||||||++..|......... ...+.+ ....++.+.... ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 368999999999999999999543321110 001111 001111111100 013
Q ss_pred cEEEEEEcCCCcch----HHHHHHhc--ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 68 SKLVFWDLGGQPGL----RSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 68 ~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
.++.++||+|.... .......+ ...+.+++|+|++-. ...+...+..+.. -..-=+++||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCC
Confidence 58999999995332 12222332 236788999998633 1334444444322 123467899999765
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=65.75 Aligned_cols=117 Identities=16% Similarity=0.148 Sum_probs=64.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhcc--CCCCCCCCccccccceeeeEEEEeCcEEEEEEcCC----C----cchHHHHHH
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYS--NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----Q----PGLRSIWEK 87 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----~----~~~~~~~~~ 87 (204)
+=-+|+|++|+||||++..-..... ...+........|..++.. -.-.-.++||.| + +.....|..
T Consensus 126 PWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdww----f~deaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWW----FTDEAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred CceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcc----cccceEEEcCCcceecccCcchhhHHHHHH
Confidence 3358999999999999876421111 0111111111113333322 122457889988 2 233445554
Q ss_pred hc---------ccCCEEEEEEeCCCCCC--HHH---HH----HHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 88 YY---------EEAHAVVFVIDAACPSR--FED---SK----TALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 88 ~~---------~~~d~ii~v~d~~~~~s--~~~---~~----~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
++ +..+|||+.+|+.+--. -.. .. .-+.++-.. .....|+.+++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 42 34899999999974211 111 11 112222222 225689999999999976
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.1e-05 Score=42.15 Aligned_cols=43 Identities=23% Similarity=0.418 Sum_probs=28.4
Q ss_pred CCEEEEEEeCCCC--CCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCC
Q 028776 92 AHAVVFVIDAACP--SRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136 (204)
Q Consensus 92 ~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 136 (204)
.++++|++|++.. .+.+.....+..+.... .++|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 7899999999854 45666666777776654 4899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00078 Score=45.75 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=26.3
Q ss_pred HHHhhhcCCcccEEEEEcCCCCChHHHHHHHHhhc
Q 028776 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
.+...........+++.|++|+|||++++.+....
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 33334444456789999999999999999996643
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0001 Score=63.32 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCCC------CCCccc-----------cccceeeeEE-----------EEeCcE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGL------PPDRIV-----------PTVGLNIGRI-----------EVSNSK 69 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~------~~~~~~-----------~~~~~~~~~~-----------~~~~~~ 69 (204)
--++++|++|+||||++..|........+. ..+.+. ...++.+... ...+.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 367999999999999999996544211110 011110 0111111100 113557
Q ss_pred EEEEEcCCCc----chHHHHHHhc--ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 70 LVFWDLGGQP----GLRSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 70 ~~~~D~~g~~----~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
+.++||+|.. .......... ...+-+++|+|++-. .+.+.+.+..+..... -.+-=+++||.|-..
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~--~~i~glIlTKLDEt~ 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAG--EDVDGCIITKLDEAT 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhccc--CCCCEEEEeccCCCC
Confidence 9999999932 2222222222 236678999999743 2333333333322110 013357799999765
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.9e-05 Score=63.81 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=35.8
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 77 (204)
...+.|++||.|||||||+||+|.+.....-.. +...|..+ .++ +=.-.+.+.|+||
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~---TPGkTKHF--QTi-~ls~~v~LCDCPG 368 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSVSS---TPGKTKHF--QTI-FLSPSVCLCDCPG 368 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCceeeeec---CCCCccee--EEE-EcCCCceecCCCC
Confidence 347999999999999999999996543221111 11112111 112 2234678999999
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00087 Score=52.94 Aligned_cols=102 Identities=15% Similarity=0.184 Sum_probs=58.0
Q ss_pred CcEEEEEEcCCCcchHHHHHHhc-------ccCCEEEEEEeCCCCCC--H--------------------HHHHHH-HHH
Q 028776 67 NSKLVFWDLGGQPGLRSIWEKYY-------EEAHAVVFVIDAACPSR--F--------------------EDSKTA-LEK 116 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~-------~~~d~ii~v~d~~~~~s--~--------------------~~~~~~-~~~ 116 (204)
.....++.+.|..........+. -..|++|.|+|+.+-.. + ..+... ..+
T Consensus 92 ~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q 171 (341)
T TIGR02475 92 RPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQ 171 (341)
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHH
Confidence 34678899999776655554431 24789999999974211 0 000111 122
Q ss_pred HHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCccccccceeEEEeecccCCCChHHHHH
Q 028776 117 VLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178 (204)
Q Consensus 117 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 178 (204)
+. ..-++++||+|+..+...+.+...+.... ....++++++ ........++.
T Consensus 172 i~-------~AD~IvlnK~Dl~~~~~l~~~~~~l~~~~--~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 172 LA-------CADLVILNKADLLDAAGLARVRAEIAAEL--PRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred HH-------hCCEEEEeccccCCHHHHHHHHHHHHHhC--CCCCEEEEcc-cCCCCHHHHhC
Confidence 21 23499999999988766666666664211 1223455543 34455555554
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00013 Score=59.18 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=38.4
Q ss_pred CcEEEEEEcCCCcch----HHHHHHh--cccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 67 NSKLVFWDLGGQPGL----RSIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
+..+.++||+|.... ......+ .-..|.+++|+|+... .........+.... ...=++.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCcc
Confidence 457899999994322 2222111 2347899999998754 33444444443222 12356689999643
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00038 Score=55.69 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=63.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccCCC---C-----CCCCcc-----------ccccceeeeEE-----------EEe
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVE---G-----LPPDRI-----------VPTVGLNIGRI-----------EVS 66 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~~~---~-----~~~~~~-----------~~~~~~~~~~~-----------~~~ 66 (204)
...|+++|++|+||||.+..+........ + ...+.+ ....++.+... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 35789999999999999999864432110 0 000110 01111111111 114
Q ss_pred CcEEEEEEcCCCcchH----HHHHHhccc---CCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 67 NSKLVFWDLGGQPGLR----SIWEKYYEE---AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~----~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
+..+.++||+|..... ......+.. .+-+++|+|++.. ...+...+..+.. -.+-=+++||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 6689999999943221 222233332 2368899999865 2444444444421 124468899999755
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00028 Score=54.02 Aligned_cols=89 Identities=21% Similarity=0.162 Sum_probs=61.5
Q ss_pred HhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHH--HHHHhCccccccceeEEEe
Q 028776 87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE--LARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 87 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 164 (204)
..+.+.|-+++|+.+.+|+--.....-+.-+... .++..|+++||+|+.+...... ....+. ..+++++.
T Consensus 75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~-----~~gy~v~~ 146 (301)
T COG1162 75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYE-----DIGYPVLF 146 (301)
T ss_pred CcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHH-----hCCeeEEE
Confidence 3345578888888998886333333333333333 4677888899999988655553 333332 56789999
Q ss_pred ecccCCCChHHHHHHHHHH
Q 028776 165 VSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 165 ~Sa~~~~~v~~l~~~i~~~ 183 (204)
+|++++.+++++.+.+...
T Consensus 147 ~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 147 VSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ecCcCcccHHHHHHHhcCC
Confidence 9999999999998887644
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00083 Score=42.39 Aligned_cols=97 Identities=22% Similarity=0.199 Sum_probs=56.0
Q ss_pred EEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHH-HHHhcccCCEEEEE
Q 028776 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-WEKYYEEAHAVVFV 98 (204)
Q Consensus 20 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~ii~v 98 (204)
+++.|..|+||||+...+....... + .....+ + ++.++|+++....... .......+|.++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-g-----------~~v~~~--~--d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v 65 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-G-----------KRVLLI--D--DYVLIDTPPGLGLLVLLCLLALLAADLVIIV 65 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-C-----------CeEEEE--C--CEEEEeCCCCccchhhhhhhhhhhCCEEEEe
Confidence 6788999999999999986544320 1 011111 1 7899999986544331 23445678999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEe
Q 028776 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133 (204)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 133 (204)
++.+... ....................+..++.|
T Consensus 66 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 66 TTPEALA-VLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred cCCchhh-HHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 9887543 223222222222222223455555544
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00011 Score=60.22 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
--++++|++||||||++..|....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 468999999999999999996544
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00063 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHHhhc
Q 028776 20 VLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 20 i~v~G~~~~GKStli~~l~~~~ 41 (204)
|+++|.+||||||+.+.|....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999996543
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=59.29 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=37.2
Q ss_pred CcEEEEEEcCCCcch----HHHHHHhc--ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 67 NSKLVFWDLGGQPGL----RSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
...+.++||+|.-.. ......+. -..+.+++|+|+... .........+.... + ..=+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~-i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---G-LTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 457899999994322 22222221 257888999998643 33333444443221 1 2346669999643
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=58.57 Aligned_cols=115 Identities=22% Similarity=0.244 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhcc-CCCC-----CCCCccc-----------cccceeeeE-----------EEEeCcE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYS-NVEG-----LPPDRIV-----------PTVGLNIGR-----------IEVSNSK 69 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~-----~~~~~~~-----------~~~~~~~~~-----------~~~~~~~ 69 (204)
-.++++|++||||||++..|..... ...+ ...+.+. ...++.+.. -......
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 3789999999999999988854332 1111 0011110 000111110 0113567
Q ss_pred EEEEEcCCCcchH----HHHHHhcc---cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 70 LVFWDLGGQPGLR----SIWEKYYE---EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 70 ~~~~D~~g~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
+.++||+|..... .....++. ...-+.+|++++-. ...+...+..+... . +-=+++||.|...
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~ 371 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETS 371 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEecccccc
Confidence 9999999953332 23333433 34567888888643 23444444333211 1 2358899999754
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00023 Score=57.17 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCC-----CCCCccc-----------cccceeeeE----------EEEeCcEEE
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG-----LPPDRIV-----------PTVGLNIGR----------IEVSNSKLV 71 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~-----~~~~~~~-----------~~~~~~~~~----------~~~~~~~~~ 71 (204)
..++++|++||||||++..|........+ ...+.++ ...++.... +...+.++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 45889999999999999999643211101 0001100 011111110 011356889
Q ss_pred EEEcCCCcch-HH---HHHHhcc-----cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 72 FWDLGGQPGL-RS---IWEKYYE-----EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 72 ~~D~~g~~~~-~~---~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
++||+|.... .. .+..++. ...-.++|+|++-. .+.+...+..+ .. -.+-=+++||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f-~~----~~~~glIlTKLDEt~ 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAY-ES----LNYRRILLTKLDEAD 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHh-cC----CCCCEEEEEcccCCC
Confidence 9999995321 12 2222222 23468899999865 23444444333 11 134568899999755
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00021 Score=56.19 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=50.8
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCC--------CCCCccc-------cccceeee-----------------EE
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------LPPDRIV-------PTVGLNIG-----------------RI 63 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~-------~~~~~~~~-----------------~~ 63 (204)
+.--|.++|-.|+||||.+-.|...+..... .++..-. ...++.++ ++
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 4445789999999999999988544332221 0000000 00001111 12
Q ss_pred EEeCcEEEEEEcCCCcch-HHHHH---Hh--cccCCEEEEEEeCCCCC
Q 028776 64 EVSNSKLVFWDLGGQPGL-RSIWE---KY--YEEAHAVVFVIDAACPS 105 (204)
Q Consensus 64 ~~~~~~~~~~D~~g~~~~-~~~~~---~~--~~~~d~ii~v~d~~~~~ 105 (204)
..++..+.++||.|...- ..++. .. .-..|-+|+|+|++-..
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ 227 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH
Confidence 225778999999994322 22222 22 23489999999998553
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00013 Score=59.30 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=61.5
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCC----CCCCcccc-----------ccceeeeEEE---------------E
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRIVP-----------TVGLNIGRIE---------------V 65 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~~~-----------~~~~~~~~~~---------------~ 65 (204)
+...|+++|.+|+||||++..|......... ...+.+.+ ..++.++... .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 4567899999999999999988433321110 00000000 0111111000 0
Q ss_pred eCcEEEEEEcCCCcchHHH----HHHh--cccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 66 SNSKLVFWDLGGQPGLRSI----WEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 66 ~~~~~~~~D~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
....+.++||+|....... .... ...+|.+++|+|+.... ........+.... ...-+|+||.|...
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l----~i~gvIlTKlD~~a 246 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV----GIGGIIITKLDGTA 246 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC----CCCEEEEecccCCC
Confidence 1337899999995443221 1122 34589999999997642 2222233322111 12356779999754
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00052 Score=50.48 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=38.4
Q ss_pred EEEEEEcC-CCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCC
Q 028776 69 KLVFWDLG-GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 69 ~~~~~D~~-g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 138 (204)
.+.++||- |.+.+.+ ...+++|.++.|+|.+... + ...+.+..+....+ =.++.+|+||.|-.
T Consensus 135 e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~s-l-~taeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKS-L-RTAERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHH-H-HHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence 35555553 3333332 3456799999999997432 2 23344445554432 37999999999954
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.3e-05 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~ 41 (204)
.|+|.|++||||||+.+.|...+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999996643
|
... |
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0011 Score=47.87 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
.=|+++|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 448999999999999999997654
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00021 Score=56.64 Aligned_cols=117 Identities=19% Similarity=0.159 Sum_probs=60.7
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCC----CCCCcc-----------ccccceeeeEEE--------------Ee
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRI-----------VPTVGLNIGRIE--------------VS 66 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~-----------~~~~~~~~~~~~--------------~~ 66 (204)
+.-.++++|++||||||++..+......... ...+.+ ....++.+.... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 4557899999999999999998432211100 001111 011111111100 02
Q ss_pred CcEEEEEEcCCCcchH----HHHHHhcc--cCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 67 NSKLVFWDLGGQPGLR----SIWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~----~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
+..+.++||+|..... .....+.. ..|.+++|.++... ..++...+..+. .-.+--+++||.|...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~-----~l~i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLA-----EIPIDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcC-----cCCCCEEEEEcccCCC
Confidence 4688999999963222 22222222 35677778776432 234433333321 1224467799999765
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00048 Score=52.46 Aligned_cols=117 Identities=16% Similarity=0.131 Sum_probs=65.0
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCC------CCCC---------ccccccceeeeEE--------------EEe
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------LPPD---------RIVPTVGLNIGRI--------------EVS 66 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~---------~~~~~~~~~~~~~--------------~~~ 66 (204)
+.-+++++|++|+||||++..+......... .... .+....++.+... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3479999999999999999988544321100 0000 0011111111110 012
Q ss_pred CcEEEEEEcCCCcch----HHHHHHhc--ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 67 NSKLVFWDLGGQPGL----RSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
...+.++||+|.... ...+...+ ...+-+++|+|++-. ...+..++..+.. -.+-=+++||.|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCC
Confidence 468899999995432 12222222 236778999998743 1345455444432 234468899999866
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.61 E-value=8.4e-05 Score=52.85 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=34.0
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhC
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 151 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 151 (204)
|++++|+|+.++.+... ..+...+. ....+.|+|+|+||+|+.+.....++...+.
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~ 56 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLR 56 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHH
Confidence 78999999998743211 11222211 1113589999999999976444444444443
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.1e-05 Score=55.80 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=22.9
Q ss_pred EEEEcCCCCChHHHHHHHHhhccCCCC
Q 028776 20 VLILGIDKAGKTTLLEKLKSVYSNVEG 46 (204)
Q Consensus 20 i~v~G~~~~GKStli~~l~~~~~~~~~ 46 (204)
|+++|++|||||||++.+.+...+..+
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 699999999999999999776665554
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.3e-05 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
.+|+|+|++|||||||.+.|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999996543
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00028 Score=49.41 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHHhhcc
Q 028776 20 VLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 20 i~v~G~~~~GKStli~~l~~~~~ 42 (204)
++|.|++|+||||++.++.....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHH
Confidence 78999999999999999965443
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0013 Score=42.84 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=56.9
Q ss_pred EEEEc-CCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEE
Q 028776 20 VLILG-IDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (204)
Q Consensus 20 i~v~G-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 98 (204)
|+++| ..|+||||+...|........+....-+.. + . ..+..+.++|+|+..... ....+..+|.++++
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~----d---~-~~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvv 71 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDL----D---L-QFGDDYVVVDLGRSLDEV--SLAALDQADRVFLV 71 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC----C---C-CCCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEE
Confidence 34444 457999999888854333211110000000 0 0 011178999999865433 34566889999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCC-CCeEEEEEeC
Q 028776 99 IDAACPSRFEDSKTALEKVLRNEDLQ-GAPLLILANK 134 (204)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ivv~nK 134 (204)
++.+.. +.......+..+.... .. ..++.+|+|+
T Consensus 72 v~~~~~-s~~~~~~~~~~l~~~~-~~~~~~~~lVvNr 106 (106)
T cd03111 72 TQQDLP-SIRNAKRLLELLRVLD-YSLPAKIELVLNR 106 (106)
T ss_pred ecCChH-HHHHHHHHHHHHHHcC-CCCcCceEEEecC
Confidence 876543 3455555554444332 22 4567777775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0001 Score=49.64 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=18.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhc
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
.--++|.|++|+|||++++++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999996543
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00092 Score=45.78 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=59.9
Q ss_pred EEcCCCCChHHHHHHHHhhccCCCCC-CCCccccccceeeeEEEEeCcEEEEEEcCCCcchHHHHHHhcccCCEEEEEEe
Q 028776 22 ILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 100 (204)
Q Consensus 22 v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 100 (204)
.-|..|+||||+...+.......... .--......+ .-...+.++|+|+... ......+..+|.++++++
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~-------~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA-------NLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC-------CCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcC
Confidence 45678999999988874433321110 0000000000 0016789999997533 333567788999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCC
Q 028776 101 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137 (204)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 137 (204)
.+.. ++......+..+.... ...++.+|+|+.+.
T Consensus 76 ~~~~-s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 76 PEPT-SITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CChh-HHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 8633 3444344444443322 35678899999974
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.3e-05 Score=52.86 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHhh
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~ 40 (204)
.+|+|+|++|||||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=8.1e-05 Score=55.91 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCC
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG 46 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~ 46 (204)
-++++|+.|||||||++.+.+...+..+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~~G 57 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPKSG 57 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 3589999999999999999776665444
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00068 Score=54.20 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=52.5
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhccCCCC----CCCCcc-----------ccccceeeeEE---------------
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRI-----------VPTVGLNIGRI--------------- 63 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~-----------~~~~~~~~~~~--------------- 63 (204)
.++.-.|+++|-.|+||||.+..|...+..... ...+.+ ...+++.++..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 345678999999999999999888443332110 000111 01111112211
Q ss_pred --EEeCcEEEEEEcCCCcchHH----HHHHh--cccCCEEEEEEeCCCC
Q 028776 64 --EVSNSKLVFWDLGGQPGLRS----IWEKY--YEEAHAVVFVIDAACP 104 (204)
Q Consensus 64 --~~~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~ 104 (204)
.....++.++||+|.-.... ....+ .-++|-+++|+|+.-.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 11345799999999544332 22222 3458999999999755
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=8.8e-05 Score=52.99 Aligned_cols=23 Identities=48% Similarity=0.651 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHhh
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~ 40 (204)
.+|+|+|++||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999765
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0001 Score=53.52 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
=.++++|+.|||||||++.+....
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 357999999999999999995433
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00012 Score=42.53 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~ 41 (204)
..+|.|+.|+||||++.++.-..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999985433
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00037 Score=49.42 Aligned_cols=26 Identities=35% Similarity=0.293 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
..+-++|+|..|||||||++++....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45578999999999999999996543
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0001 Score=50.48 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 028776 20 VLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 20 i~v~G~~~~GKStli~~l~~ 39 (204)
|+++|++|||||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999954
|
... |
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0001 Score=50.23 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.1
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhh
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~ 40 (204)
+..++|+|.|.||+|||||..++...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence 56799999999999999999999643
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0028 Score=52.56 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
......+++.|++|+||||+++.+....
T Consensus 36 g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 36 GKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3446779999999999999999996643
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0015 Score=42.16 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=48.7
Q ss_pred EEEEc-CCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEe-CcEEEEEEcCCCcchHHHHHHhcccCCEEEE
Q 028776 20 VLILG-IDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (204)
Q Consensus 20 i~v~G-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 97 (204)
|++.| ..|+||||+...+...... .+. + ...++.+ ...+.++|+|+..... ....+..+|.+++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~------~-----vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv 67 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGK------R-----VLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLI 67 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCC------c-----EEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEE
Confidence 56677 4589999999888554432 110 0 0001111 1578999999865433 2366677999999
Q ss_pred EEeCCCCCCHHHHHHHHH
Q 028776 98 VIDAACPSRFEDSKTALE 115 (204)
Q Consensus 98 v~d~~~~~s~~~~~~~~~ 115 (204)
+++.+.. ++......++
T Consensus 68 ~~~~~~~-s~~~~~~~~~ 84 (104)
T cd02042 68 PVQPSPL-DLDGLEKLLE 84 (104)
T ss_pred eccCCHH-HHHHHHHHHH
Confidence 9987532 3444444433
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0041 Score=46.40 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=26.0
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhcc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~ 42 (204)
...+.-++++.|..|+||||+++++...+.
T Consensus 48 ~G~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 48 QGLPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred cCCCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 456889999999999999999999976544
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.42 E-value=9.1e-05 Score=50.43 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
=.++|+|+.|+|||||++.+.+..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 367999999999999999996644
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0073 Score=47.37 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=25.8
Q ss_pred HHhhhcCCcccEEEEEcCCCCChHHHHHHHHhhc
Q 028776 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
+..+....+...+++.|++|+||||++..+....
T Consensus 25 L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 25 LQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3334445555679999999999999999986543
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00029 Score=52.01 Aligned_cols=39 Identities=21% Similarity=0.116 Sum_probs=29.3
Q ss_pred hhHHHHHHhhhcCCcccEEEEEcCCCCChHHHHHHHHhh
Q 028776 2 FSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~ 40 (204)
+-+...+...+....-.+|++.|++|+|||+|..++...
T Consensus 2 ~~~~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 2 LWLAKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred chHHHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 334445555555556679999999999999999999654
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0013 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhh
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~ 40 (204)
+.-=||+|+|.+||||||+++.|+.-
T Consensus 376 ~kGekVaIvG~nGsGKSTilr~LlrF 401 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILRLLLRF 401 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998543
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=9.5e-05 Score=52.04 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 028776 19 HVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~ 40 (204)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999653
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00017 Score=53.18 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~ 41 (204)
-++|+|+.|||||||++.+.+..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47999999999999999885543
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0002 Score=52.87 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhc
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
..+|+|+|++||||||+.+.|....
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999996544
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00017 Score=56.36 Aligned_cols=27 Identities=33% Similarity=0.553 Sum_probs=22.4
Q ss_pred EEEEcCCCCChHHHHHHHHhhccCCCC
Q 028776 20 VLILGIDKAGKTTLLEKLKSVYSNVEG 46 (204)
Q Consensus 20 i~v~G~~~~GKStli~~l~~~~~~~~~ 46 (204)
++++|++|||||||++.+.+......+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~~~G 58 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEPTSG 58 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 689999999999999999776654444
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00037 Score=50.19 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhc
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
..-.++++|++||||||+++.+.+..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45679999999999999999997654
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00057 Score=55.15 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=78.3
Q ss_pred hHHHHHHhhhcCCcccEEEEEcCCCCChHHHHHHHHhh-----c--------cCCCCC-------------CCCcccccc
Q 028776 3 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV-----Y--------SNVEGL-------------PPDRIVPTV 56 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~-----~--------~~~~~~-------------~~~~~~~~~ 56 (204)
.+++.+-+-.+.++.|-|+++|=.|+||||-+..++.= + ....+. ....+.+-+
T Consensus 364 DlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lf 443 (587)
T KOG0781|consen 364 DLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELF 443 (587)
T ss_pred hHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHH
Confidence 45666666667789999999999999999988877200 0 000000 000000000
Q ss_pred ceeee------------EEEEeCcEEEEEEcCCCcch----HHHHHHh--cccCCEEEEEEeCC-CCCCHHHHHHHHHHH
Q 028776 57 GLNIG------------RIEVSNSKLVFWDLGGQPGL----RSIWEKY--YEEAHAVVFVIDAA-CPSRFEDSKTALEKV 117 (204)
Q Consensus 57 ~~~~~------------~~~~~~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~-~~~s~~~~~~~~~~~ 117 (204)
.--|+ +...++..+.++||+|.... ......+ +...|.|++|-.+- .-++.+++...-..+
T Consensus 444 ekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al 523 (587)
T KOG0781|consen 444 EKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRAL 523 (587)
T ss_pred hhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHH
Confidence 00000 11125778999999994322 2222222 35689999998775 345666666655555
Q ss_pred HhcCCCCCCeEEEEEeCCCCCCc
Q 028776 118 LRNEDLQGAPLLILANKQDLPDA 140 (204)
Q Consensus 118 ~~~~~~~~~p~ivv~nK~Dl~~~ 140 (204)
.... .+..---++++|+|..+.
T Consensus 524 ~~~~-~~r~id~~~ltk~dtv~d 545 (587)
T KOG0781|consen 524 ADHS-TPRLIDGILLTKFDTVDD 545 (587)
T ss_pred hcCC-CccccceEEEEeccchhh
Confidence 4443 123333578899998764
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00022 Score=56.67 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
.-+++++|.+|+|||||++.+.+....
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~ 221 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQ 221 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhccc
Confidence 347999999999999999999765543
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00021 Score=42.72 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHHhhc
Q 028776 20 VLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 20 i~v~G~~~~GKStli~~l~~~~ 41 (204)
|++.|++|+||||+.+.+....
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999996644
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0017 Score=52.36 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=27.0
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccCCCCCC
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP 48 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~ 48 (204)
-.-+|+|+|+.|+|||||+.-|++...+..+..
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~ 644 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL 644 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcCCCCCcchh
Confidence 456899999999999999999988776655533
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00019 Score=53.77 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=23.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCC
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG 46 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~ 46 (204)
-++++|+.|+|||||++.+++...+..+
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~~G 59 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPSSG 59 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 4699999999999999999886655444
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00022 Score=50.94 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=23.2
Q ss_pred cccEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 16 ~~~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
+.=.++++|+.|+|||||++.+.+...+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 4447899999999999999999775543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00047 Score=54.35 Aligned_cols=57 Identities=26% Similarity=0.351 Sum_probs=35.8
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhccCCCCCCCCccccccceeeeEEEEeCcEEEEEEcCC
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 77 (204)
++.++++|+|.|++||||+||+|.......-+... . -|.. ..++ .-+..+.++|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p-G--vT~s--mqeV-~Ldk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP-G--VTRS--MQEV-KLDKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCc-c--chhh--hhhe-eccCCceeccCCc
Confidence 67899999999999999999999543221111110 0 1111 1112 2245788999999
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00067 Score=53.50 Aligned_cols=68 Identities=24% Similarity=0.298 Sum_probs=51.3
Q ss_pred cchHHHHHHhcccCCEEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhC
Q 028776 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRF--EDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 151 (204)
Q Consensus 79 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 151 (204)
..|...+...++.+|+|+.|+|+.+|.+- ..+..+. +... .++..|+|+||+|+......+++..++.
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V---~~~~--gnKkLILVLNK~DLVPrEv~e~Wl~YLr 203 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAV---LQAH--GNKKLILVLNKIDLVPREVVEKWLVYLR 203 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHH---Hhcc--CCceEEEEeehhccCCHHHHHHHHHHHH
Confidence 44556667778889999999999999654 3344432 2222 3589999999999999888888888886
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00025 Score=50.98 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
.+|+|+|.+||||||+.++|....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999996543
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00027 Score=51.91 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=25.0
Q ss_pred cCCcccEEEEEcCCCCChHHHHHHHHhhc
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
+..+.+.|+|.|++|||||||++.|....
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34677899999999999999999997654
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00026 Score=52.27 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
=.++|+|+.|+|||||++.+.+...+
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 35799999999999999999876544
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00025 Score=51.47 Aligned_cols=28 Identities=43% Similarity=0.531 Sum_probs=23.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCCCC
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG 46 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~~~ 46 (204)
-++|+|+.|+|||||++.|++...+..+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~~G 56 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPDSG 56 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCCCC
Confidence 3689999999999999999887765443
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00027 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhhc
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~ 41 (204)
+|+++|.+||||||+.++|....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999996543
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.017 Score=40.94 Aligned_cols=65 Identities=8% Similarity=-0.010 Sum_probs=43.2
Q ss_pred EEEEEEcCCCcchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCC
Q 028776 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 69 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 139 (204)
.+.++|+|+..... ....+..+|.++++++.+.. ++......+..+... ......+++|+.|...
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc---CCceEEEEEeCCcccc
Confidence 79999999864432 34456789999999987643 344554544444332 2346788999998754
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00032 Score=51.66 Aligned_cols=29 Identities=38% Similarity=0.366 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG 46 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~ 46 (204)
=.++++|+.|+|||||++.+.+...+..+
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG 42 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAPDEG 42 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCC
Confidence 45799999999999999999876654444
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0003 Score=51.47 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
-=.++++|+.|+|||||++.+.+...+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 52 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 346899999999999999999876543
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00031 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
=.++|+|++|+|||||++.+.+...+
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35899999999999999999876543
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00031 Score=51.57 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
=.++++|+.|+|||||++.+.+...+
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45799999999999999999876543
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00031 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
=.++++|+.|+|||||++.+.+...+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46799999999999999999876543
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00032 Score=50.67 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccC
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
.++|+|+.|+|||||++.+.+...+
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5799999999999999999775543
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00031 Score=52.55 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
=.++++|+.|+|||||++.+.+...+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35799999999999999999876544
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00033 Score=48.06 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
+.|+|+|+.|||||||+..|.+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999996644
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0003 Score=51.71 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccC
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
.++++|+.|+|||||++.+.+...+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 51 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCC
Confidence 8899999999999999999876543
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00033 Score=51.53 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
=.++++|+.|+|||||++.+.+...+
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46799999999999999999876543
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00092 Score=51.76 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCChHHHHHHHHhhc
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 15 ~~~~~i~v~G~~~~GKStli~~l~~~~ 41 (204)
.+.+-|+++|-.|+||||-|..|...+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l 163 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYL 163 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHH
Confidence 347889999999999999999985443
|
|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00028 Score=49.46 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHHHHH
Q 028776 18 FHVLILGIDKAGKTTLLEKLK 38 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~ 38 (204)
++|+|.|.||+||||+.++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999999995
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00033 Score=51.56 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
=.++++|+.|+|||||++.+.+...+
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGALTP 54 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46899999999999999999876543
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00034 Score=51.73 Aligned_cols=29 Identities=38% Similarity=0.587 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccCCCC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG 46 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~~~~ 46 (204)
=+|+++|++|+|||||++-+.+...+..+
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~~Pt~G 82 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIYKPTSG 82 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence 47899999999999999999876665444
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00035 Score=51.23 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=24.0
Q ss_pred CCcccEEEEEcCCCCChHHHHHHHHhhcc
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 14 ~~~~~~i~v~G~~~~GKStli~~l~~~~~ 42 (204)
+++..-|+|+|++|||||||++.+.+...
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567799999999999999999976543
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00033 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhcc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~ 42 (204)
=.++|+|+.|+|||||++.+.+...
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3579999999999999999987554
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00037 Score=51.59 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
=.++|+|+.|+|||||++.+.+...+
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 36899999999999999999876544
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00035 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
=.++++|+.|+|||||++.+.+...+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35899999999999999999876543
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=50.78 Aligned_cols=99 Identities=21% Similarity=0.229 Sum_probs=68.5
Q ss_pred EcCCC-cchHHHHHHhcccCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCCccCHHHHHHHhCc
Q 028776 74 DLGGQ-PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL 152 (204)
Q Consensus 74 D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 152 (204)
+.||+ .++.......+..+|+++.|+|+.+|.+... ..+..+. ...|.++|+||+|+.+.....+..+++..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHh
Confidence 34664 4667788888999999999999999865422 1122222 24555999999999886666677766652
Q ss_pred cccccceeEEEeecccCCCChHHHHHHHHHH
Q 028776 153 KKLDERVCMFEAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 153 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 183 (204)
.. +...+.++++.+.+...+...+...
T Consensus 89 ~~----~~~~~~v~~~~~~~~~~i~~~~~~~ 115 (322)
T COG1161 89 EE----GIKPIFVSAKSRQGGKKIRKALEKL 115 (322)
T ss_pred cC----CCccEEEEeecccCccchHHHHHHH
Confidence 22 4556778888888877777544433
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00034 Score=51.51 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhccCC
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNV 44 (204)
Q Consensus 19 ~i~v~G~~~~GKStli~~l~~~~~~~ 44 (204)
-|+++|+.|+|||||++.+.+.....
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t 57 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPT 57 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC
Confidence 37999999999999999996644443
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00036 Score=46.93 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHHhhc
Q 028776 20 VLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 20 i~v~G~~~~GKStli~~l~~~~ 41 (204)
|++.|++|+|||++++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999997643
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00039 Score=49.72 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
.=.++++|+.|+|||||++.+.+...+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 346789999999999999999876543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00035 Score=51.71 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 17 ~~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
.=.++|+|+.|||||||++.+.+...+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 346899999999999999999776543
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00037 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
=.++++|+.|+|||||++.+.+...+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35799999999999999999876543
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00034 Score=48.26 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhcc
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~ 42 (204)
=.++++|+.|+|||||++.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4578999999999999999976543
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00036 Score=52.38 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChHHHHHHHHhhccC
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 18 ~~i~v~G~~~~GKStli~~l~~~~~~ 43 (204)
=.++++|+.|||||||++.+.+...+
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 35899999999999999999776543
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 204 | ||||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 2e-30 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 8e-30 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 1e-29 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 2e-29 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 4e-29 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 5e-29 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 6e-29 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 6e-29 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 3e-28 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 3e-28 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 5e-28 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 5e-28 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 7e-28 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 7e-28 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 7e-28 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 9e-28 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 9e-28 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 1e-27 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 2e-27 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 3e-27 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 4e-27 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 6e-27 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 7e-27 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 8e-27 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 1e-26 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 2e-26 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 2e-26 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 2e-26 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-26 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 3e-26 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 4e-26 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 4e-26 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 5e-26 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 5e-26 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 9e-26 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 1e-25 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 1e-25 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 1e-25 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 2e-25 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 2e-25 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 3e-25 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 5e-25 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 1e-24 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 2e-24 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 1e-22 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 3e-22 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 1e-20 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 1e-18 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 1e-18 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 7e-16 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 1e-15 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 1e-15 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 3e-15 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 1e-08 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 1e-08 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 8e-08 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 2e-07 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 3e-07 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 6e-07 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 7e-07 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 9e-07 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 9e-07 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 1e-06 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 1e-06 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 1e-06 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 1e-06 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 1e-06 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 1e-06 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 1e-06 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 1e-06 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 1e-06 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 3e-06 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 4e-06 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 4e-06 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 5e-06 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 7e-06 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 8e-06 | ||
| 3rwm_B | 185 | Crystal Structure Of Ypt32 In Complex With Gppnhp L | 1e-05 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 1e-05 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 2e-05 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 2e-05 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 2e-05 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 2e-05 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 2e-05 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 3e-05 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 3e-05 | ||
| 4epr_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 3e-05 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 3e-05 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 3e-05 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 4e-05 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 4e-05 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 4e-05 | ||
| 1gua_A | 167 | Human Rap1a, Residues 1-167, Double Mutant (E30d,K3 | 5e-05 | ||
| 4dso_A | 189 | Small-Molecule Ligands Bind To A Distinct Pocket In | 5e-05 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 5e-05 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 7e-05 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 7e-05 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 7e-05 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 7e-05 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 7e-05 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 9e-05 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 9e-05 | ||
| 1c1y_A | 167 | Crystal Structure Of Rap.Gmppnp In Complex With The | 9e-05 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 9e-05 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 1e-04 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 1e-04 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 1e-04 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 1e-04 | ||
| 2fh5_B | 214 | The Structure Of The Mammalian Srp Receptor Length | 1e-04 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 1e-04 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 2e-04 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 2e-04 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 2e-04 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 2e-04 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 2e-04 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 2e-04 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 2e-04 | ||
| 3brw_D | 167 | Structure Of The Rap-Rapgap Complex Length = 167 | 2e-04 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 2e-04 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 3e-04 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 3e-04 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 3e-04 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 4e-04 | ||
| 4dxa_A | 169 | Co-Crystal Structure Of Rap1 In Complex With Krit1 | 4e-04 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 4e-04 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 4e-04 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 4e-04 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 4e-04 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 4e-04 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 5e-04 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 5e-04 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 6e-04 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 6e-04 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 7e-04 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 7e-04 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 7e-04 |
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167 | Back alignment and structure |
|
| >pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 1e-78
Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 9/189 (4%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
+ S+ L E +L+LG+D AGKTTLL++L I PT G NI
Sbjct: 2 LLSILRKLKS--APDQEVRILLLGLDNAGKTTLLKQLA-------SEDISHITPTQGFNI 52
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
++ KL WD+GGQ +R W Y+E +++VID+A RFE++ L ++L
Sbjct: 53 KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 112
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
E L P+LI ANKQDL A A E+A L+L + +RV ++ S G G+++ + W+
Sbjct: 113 EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172
Query: 181 VEVMERSKR 189
+ + K+
Sbjct: 173 CKNVNAKKK 181
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 230 bits (590), Expect = 4e-78
Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 8/190 (4%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
M LF +W+ +F E V+I+G+D AGKTT+L + PT+G N+
Sbjct: 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFS-------MNEVVHTSPTIGSNV 52
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
I ++N++ + WD+GGQ LRS W YY V+ V+D+ R ++ L K+L +
Sbjct: 53 EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 112
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
EDL+ A LLI ANKQD+ + ++ E++++L L + + +A G G+ + +EW+
Sbjct: 113 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172
Query: 181 VEVMERSKRT 190
+ ++
Sbjct: 173 MSRLKIRLEH 182
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 2e-77
Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
L L K + E +L+LG+D AGKTT+L+K G D I PT+G NI +
Sbjct: 5 LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTL 57
Query: 64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
E KL WD+GGQ LRS W Y+E +++V+D+A R +D + L+ +L E L
Sbjct: 58 EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL 117
Query: 124 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 183
GA LLI ANKQDLP A+S + + L+L + + S G + ++WL++
Sbjct: 118 AGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 177
Query: 184 M 184
+
Sbjct: 178 I 178
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 7e-77
Identities = 69/189 (36%), Positives = 108/189 (57%), Gaps = 8/189 (4%)
Query: 1 MFSLFYGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN 59
M ++F ++ ++ + E +LILG+D AGKTT+L +L+ PT+G N
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGE-------VVTTKPTIGFN 53
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
+ + N KL WDLGGQ +R W YY + AV+FV+D+ R + L +L+
Sbjct: 54 VETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQ 113
Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 179
E+LQ A LL+ ANKQD P A+SA E+++ L+L +L +R A S G GI E ++W
Sbjct: 114 EEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDW 173
Query: 180 LVEVMERSK 188
L++V++ +
Sbjct: 174 LIDVIKEEQ 182
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 8e-76
Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 8/184 (4%)
Query: 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS 66
GL +K E + ++G+ +GKTT + + S G + ++PTVG N+ +I
Sbjct: 13 GLVPR-GSKEEMELTLVGLQYSGKTTFVNVIAS------GQFNEDMIPTVGFNMRKITKG 65
Query: 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
N + WD+GGQP RS+WE+Y A+V+++DAA + E SK L +L LQG
Sbjct: 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI 125
Query: 127 PLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186
P+L+L NK+DLP A+ EL ++L + +R ++S + I +++WL++ +
Sbjct: 126 PVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS-K 184
Query: 187 SKRT 190
S+R+
Sbjct: 185 SRRS 188
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 1e-74
Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS 66
GL E HVL LG+D +GKTT++ KLK I+PT+G +I + + S
Sbjct: 13 GLVP--RGSKEVHVLCLGLDNSGKTTIINKLKP-----SNAQSQNILPTIGFSIEKFKSS 65
Query: 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG- 125
+ +D+ GQ R++WE YY+E A++FVID++ R +K L+ +L + D++
Sbjct: 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHR 125
Query: 126 -APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184
P+L ANK DL DAV++ ++++ L L+ + ++ A G G++E V+WL + +
Sbjct: 126 RIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
Query: 185 ERSK 188
+ K
Sbjct: 186 QTVK 189
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 2e-74
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 10/187 (5%)
Query: 1 MFSLFYGLWKYI---FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG 57
M + L + + + VL+LG+D AGKT++L +L VPTVG
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLH-------LGDVVTTVPTVG 55
Query: 58 LNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKV 117
+N+ ++ N WDLGGQ G+R W Y+ + AV++V+D+ R +K L +
Sbjct: 56 VNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYAL 115
Query: 118 LRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 177
L ++L+ + LLI ANKQDLPDA S E+A L + + R S G G+ E +
Sbjct: 116 LDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175
Query: 178 EWLVEVM 184
+WLVE +
Sbjct: 176 DWLVERL 182
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 221 bits (564), Expect = 4e-74
Identities = 60/179 (33%), Positives = 100/179 (55%), Gaps = 7/179 (3%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN 67
L+ IF K + +L++G+D AGKTT+L KLK +PT+G N+ +E N
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKN 72
Query: 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP 127
WD+GGQ +R +W Y++ ++FV+D+ R ++S L+K+L+ ++L+ A
Sbjct: 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132
Query: 128 LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186
LL+ ANKQD+P+A+ EL L L+ L R +A G G+ + ++WL + +
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 6e-74
Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 9/178 (5%)
Query: 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS 66
GL E V+I+G+D AGKTT+L + PT+G N+ I ++
Sbjct: 13 GLVP--RGSQEHKVIIVGLDNAGKTTILYQFS-------MNEVVHTSPTIGSNVEEIVIN 63
Query: 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
N++ + WD+GGQ LRS W YY V+ V+D+ R ++ L K+L +EDL+ A
Sbjct: 64 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA 123
Query: 127 PLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184
LLI ANKQD+ + ++ E++++L L + + +A G G+ + +EW++ +
Sbjct: 124 GLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 2e-72
Identities = 62/176 (35%), Positives = 94/176 (53%), Gaps = 7/176 (3%)
Query: 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
E +LILG+D AGKTT+L +L+ +PT+G N+ + N K
Sbjct: 3 HMTREMRILILGLDGAGKTTILYRLQ-------VGEVVTTIPTIGFNVETVTYKNLKFQV 55
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WDLGG +R W YY AV++V+D+ R SK+ L +L E+L+ A L++ A
Sbjct: 56 WDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFA 115
Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
NKQD+ A+++ E+A L L L +R S G G+ E++EWLVE ++ +
Sbjct: 116 NKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 171
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 1e-71
Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 7/170 (4%)
Query: 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
+L++G+D AGKTT+L KLK +PT+G N+ +E N WD+GGQ
Sbjct: 2 RILMVGLDAAGKTTILYKLK-------LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54
Query: 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138
+R +W Y++ ++FV+D+ R +++ L ++L ++L+ A LL+ ANKQDLP
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114
Query: 139 DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
+A++A E+ L L L R +A G G+ E ++WL + K
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 164
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 203 bits (520), Expect = 2e-67
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 1 MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN 59
+F F + + +L LG+D AGKTTLL LK + PT
Sbjct: 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLK-------NDRLATLQPTWHPT 58
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
+ + N K +DLGG R +W+ Y+ E + +VF++DAA P RF++++ L+ +
Sbjct: 59 SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN 118
Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-------DERVCMFEAVSGYDGFG 172
+L+ P +IL NK D P+AVS EL L L +R S G
Sbjct: 119 IAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178
Query: 173 IKESVEWLVE 182
E+ +WL +
Sbjct: 179 YLEAFQWLSQ 188
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 3e-65
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 20/198 (10%)
Query: 1 MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN 59
++S F + +++ K ++ LG+D AGKTTLL LK VPT+
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-------HVPTLHPT 60
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
+ ++ +DLGG R +W+ Y + +VF++D A R +SK L+ ++
Sbjct: 61 SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYL------------DLKKLDERVCMFEAVSG 167
+E + P+LIL NK D P+A+S + L LK+L+ R S
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180
Query: 168 YDGFGIKESVEWLVEVME 185
G E W+ + ++
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 1e-61
Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 7/188 (3%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
+ + +F K E +L++G+D AGKTT+L KLK +PT+G N+
Sbjct: 149 AQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLK-------LGEIVTTIPTIGFNV 201
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
+E N WD+GGQ +R +W Y++ ++FV+D+ R +++ L ++L
Sbjct: 202 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 261
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
++L+ A LL+ ANKQDLP+A++A E+ L L L R +A G G+ E ++WL
Sbjct: 262 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321
Query: 181 VEVMERSK 188
+ K
Sbjct: 322 SNQLRNQK 329
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 2e-49
Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 20/190 (10%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----PDRIVPTVGLNIGRIEVS---- 66
+ F ++ G +GKTT L+ + S T+ + +++
Sbjct: 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKG 71
Query: 67 -NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN----- 120
++ + + GQ + + +VFV D+A P+R + ++ + N
Sbjct: 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA-PNRLRANAESMRNMRENLAEYG 130
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
L P++I NK+DLPDA+ + + +D + + + EA +G G+ E+++ +
Sbjct: 131 LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD---PEGKFPVLEA-VATEGKGVFETLKEV 186
Query: 181 VE-VMERSKR 189
V+ R
Sbjct: 187 SRLVLARVAG 196
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 1e-43
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 16/173 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LV 71
++ VL +G+ +GKT L +L + ++ + +V+N++ L
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTG-------QYRDTQTSITDSSAIYKVNNNRGNSLT 57
Query: 72 FWDLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDL--QGAP 127
DL G LR + +++ A AVVFV+D+A R +D L +VL +
Sbjct: 58 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS 117
Query: 128 LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
LLI NKQD+ A SA + + L+ + RV A S D L
Sbjct: 118 LLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAP--AQL 168
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 8e-39
Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 16/146 (10%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
+ ++I G +GKT+LL L + + + P V + + + S + D
Sbjct: 46 SYQPSIIIAGPQNSGKTSLLTLLTT-----DSVRP--TVVSQE-PLSAADYDGSGVTLVD 97
Query: 75 LGGQPGLRSIWEKYYEE----AHAVVFVIDAAC-PSRFEDSKTALEKVLRNEDL---QGA 126
G LR Y + ++F++D+ P + + L +L + G
Sbjct: 98 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 157
Query: 127 PLLILANKQDLPDAVSADELARYLDL 152
+LI NK +L A ++ L+
Sbjct: 158 DILIACNKSELFTARPPSKIKDALES 183
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 2e-37
Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 23/154 (14%)
Query: 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIE 64
G+ + + ++I G +GKT+LL L + D + PTV + +
Sbjct: 5 GIKQ---KSYQPSIIIAGPQNSGKTSLLTLLTT----------DSVRPTVVSQEPLSAAD 51
Query: 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEA----HAVVFVIDAAC-PSRFEDSKTALEKVLR 119
S + D G LR Y + ++F++D+ P + + L +L
Sbjct: 52 YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS 111
Query: 120 NEDL---QGAPLLILANKQDLPDAVSADELARYL 150
+ G +LI NK +L A ++ L
Sbjct: 112 ITESSCENGIDILIACNKSELFTARPPSKIKDAL 145
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 4e-26
Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 15/172 (8%)
Query: 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNS 68
F ++ +L++G+ ++GK+++ K V+ + + T + I S
Sbjct: 13 NLYFQGSKPRILLMGLRRSGKSSIQ---KVVFHKMSPNETLFLESTNKIYKDDISNSSFV 69
Query: 69 KLVFWDLGGQPGLRSIW---EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
WD GQ E + A+++VIDA ++ + +
Sbjct: 70 NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPD 129
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDE--------RVCMFEAVSGYD 169
+ +K D E R + + D+ F S YD
Sbjct: 130 MNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD 181
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 1e-21
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 7/122 (5%)
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL----QGAPL 128
G + + +K E ++V +A R E ++ D G PL
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPL 165
Query: 129 LIL-ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187
L+L Q + LA L L L+ + + G +EW++E +E
Sbjct: 166 LVLSCISQGDVKRMPCFYLAHELHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESK 224
Query: 188 KR 189
+
Sbjct: 225 RA 226
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 1e-20
Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 17/175 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQ 78
+L++G +GK+++ ++SN R+ T+ + + + N L WD GGQ
Sbjct: 6 LLLMGRSGSGKSSMR---SIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ 62
Query: 79 -----PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILA 132
+ ++ ++ V D +D + + + + A + +L
Sbjct: 63 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122
Query: 133 NKQDLPDAVSADELARYL------DLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
+K DL +EL + + + + S +D + ++ +V
Sbjct: 123 HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIV 176
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 7e-18
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 7/121 (5%)
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL----QGAPLL 129
G + + +K E ++V +A R E ++ D G PLL
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPLL 251
Query: 130 ILA-NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
+L+ Q + LA L L L+ + + G +EW++E +E +
Sbjct: 252 VLSCISQGDVKRMPCFYLAHELHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310
Query: 189 R 189
Sbjct: 311 A 311
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 4e-15
Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 19/163 (11%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
VL++G+ + GK+++ K V+ N++ L + T ++ + L +L GQ
Sbjct: 2 VLLMGVRRCGKSSIC---KVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQL 57
Query: 80 GLRSIW---EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANK 134
E+ ++ A+V+VID+ + ++ T L ++ + + +L +K
Sbjct: 58 NYFEPSYDSERLFKSVGALVYVIDSQ--DEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115
Query: 135 QDLPDAVSADELARYLDLKKLDE--------RVCMFEAVSGYD 169
D + R + + +E F S +D
Sbjct: 116 VDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD 158
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 5e-11
Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 30/173 (17%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-------- 68
E V ++G AGKT+LL++L + + T GLN+ + N
Sbjct: 41 EIKVHLIGDGMAGKTSLLKQL------IGETFDPKESQTHGLNVVTKQAPNIKGLENDDE 94
Query: 69 ----KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
FWD GGQ + + + + + + ++D + L + +
Sbjct: 95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGG-- 149
Query: 125 GAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175
+P++++ NK D + ++ ++ F +S +G G++
Sbjct: 150 KSPVIVVMNKIDENPSYNIEQKKIN-----ERFPAIENRFHRISCKNGDGVES 197
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-10
Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 35/191 (18%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
TE+ ++++G GK+ L +L ++ D PT IE S K V
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQL------IQNHFVDEYDPT-------IEDSYRKQVVIDG 66
Query: 73 -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
D GQ ++ ++Y + V F D E++ R +D
Sbjct: 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD 126
Query: 126 APLLILANKQDLPD-AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
P++++ NK DLP V + LA+ F S G++++ LV
Sbjct: 127 VPMVLVGNKCDLPTRTVDTKQAHELAKSYG--------IPFIETSAKTRQGVEDAFYTLV 178
Query: 182 EVMERSKRTEM 192
+ + + ++
Sbjct: 179 REIRQYRMKKL 189
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 8e-10
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 28/148 (18%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
E+ +++LG GK+ L + V+G+ ++ PT IE S K V
Sbjct: 2 REYKLVVLGSGGVGKSALTVQF------VQGIFVEKYDPT-------IEDSYRKQVEVDC 48
Query: 73 -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
D G ++ + Y + V S F D + E++LR +D +
Sbjct: 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED 108
Query: 126 APLLILANKQDLPD--AVSADE---LAR 148
P++++ NK DL D V ++ LAR
Sbjct: 109 VPMILVGNKCDLEDERVVGKEQGQNLAR 136
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-09
Identities = 27/188 (14%), Positives = 65/188 (34%), Gaps = 19/188 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNS-----K 69
++I+G +GKTTLL++ + TVG+++ I++ +
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQ----LMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLV 57
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP-SRFEDSKTALEKVLRNEDLQGAPL 128
L WD G+ S + + + V D + + + K L + +P+
Sbjct: 58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS--SSPV 115
Query: 129 LILANKQDLPD-----AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 183
+++ D+ D A + L+ + + + + + + ++
Sbjct: 116 ILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175
Query: 184 MERSKRTE 191
K +
Sbjct: 176 SLNFKIRD 183
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-09
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 32/196 (16%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
V+I G GK+TLL+ L + + P T G+N+G+ E + D
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYP----FTTRGINVGQFEDGYFRYQIID 220
Query: 75 LGGQPGL-------RSIWEKYYEEAH-----AVVFVIDAA--CPSRFEDSKTALEKVLRN 120
PGL R+ EK A ++++ D + C E+ E+V +
Sbjct: 221 T---PGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV--H 275
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE----S 176
+ + P L++ NK D+ D + L +++ K L+ + +S G GI
Sbjct: 276 GEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLN----PIK-ISALKGTGIDLVKEEI 330
Query: 177 VEWLVEVMERSKRTEM 192
++ L + E+ R ++
Sbjct: 331 IKTLRPLAEKVAREKI 346
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 53.6 bits (130), Expect = 2e-09
Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 24/181 (13%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLV 71
E+ V++LG GK+ L + V G ++ PT+ + R IEV +S L
Sbjct: 2 REYKVVVLGSGGVGKSALTVQF------VTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLE 54
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
D G S+ + Y + + V F+D K ++++R + + P++++
Sbjct: 55 ILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILV 114
Query: 132 ANKQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186
NK DL VS+ E LA C F S + E +V M
Sbjct: 115 GNKVDLESEREVSSSEGRALAEEWG--------CPFMETSAKSKTMVDELFAEIVRQMNY 166
Query: 187 S 187
+
Sbjct: 167 A 167
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-09
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 27/147 (18%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
TE+ ++++G GK+ L +L ++ D PT IE S K V
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQL------IQNHFVDECDPT-------IEDSYRKQVVIDG 48
Query: 73 -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
D GQ ++ ++Y + V FED E++ R +D
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 126 APLLILANKQDLPD-AVSADE---LAR 148
P++++ NK DL V + + LAR
Sbjct: 109 VPMVLVGNKSDLAARTVESRQAQDLAR 135
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-09
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 27/147 (18%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
TE+ ++++G D GK+ L +L ++ D PT IE S K V
Sbjct: 3 TEYKLVVVGADGVGKSALTIQL------IQNHFVDEYDPT-------IEDSYRKQVVIDG 49
Query: 73 -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
D GQ ++ ++Y + V FED E++ R +D +
Sbjct: 50 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED 109
Query: 126 APLLILANKQDLPD-AVSADE---LAR 148
P++++ NK DLP V + LAR
Sbjct: 110 VPMVLVGNKCDLPSRTVDTKQAQDLAR 136
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 5e-09
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 103
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 104 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +++ + + N L+ +++ NKQDL
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 9e-09
Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 28/148 (18%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
+ ++++G GK+ L + + + D PT IE S K
Sbjct: 17 PTYKLVVVGDGGVGKSALTIQF------FQKIFVDDYDPT-------IEDSYLKHTEIDN 63
Query: 73 -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
D GQ ++ E+Y + V + FE + +LR +D +
Sbjct: 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123
Query: 126 APLLILANKQDLPD--AVSADE---LAR 148
P++++ANK DL V+ D+ +A
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMAT 151
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-08
Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 36/191 (18%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF---- 72
++++G GK+ L + ++ PT IE S +K+
Sbjct: 9 THKLVVVGGGGVGKSALTIQF------IQSYFVSDYDPT-------IEDSYTKICSVDGI 55
Query: 73 ------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
D GQ ++ E+Y H + V F + ++LR +D
Sbjct: 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDF 115
Query: 127 PLLILANKQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
P++++ NK DL V E + S + E+ E LV
Sbjct: 116 PVVLVGNKADLESQRQVPRSEASAFGASHH--------VAYFEASAKLRLNVDEAFEQLV 167
Query: 182 EVMERSKRTEM 192
+ + + E+
Sbjct: 168 RAVRKYQEQEL 178
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-08
Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 36/188 (19%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF---- 72
+ ILG GK++L + VEG D PT IE + +KL+
Sbjct: 6 SRKIAILGYRSVGKSSLTIQF------VEGQFVDSYDPT-------IENTFTKLITVNGQ 52
Query: 73 ------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
D GQ + Y + + + V FE K K+L
Sbjct: 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI 112
Query: 127 PLLILANKQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
P++++ NK+DL +S +E LA + F S + + ++
Sbjct: 113 PIMLVGNKKDLHMERVISYEEGKALAESWN--------AAFLESSAKENQTAVDVFRRII 164
Query: 182 EVMERSKR 189
E+
Sbjct: 165 LEAEKMDG 172
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 3e-08
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA---------- 102
PT G++ E+ N D+GGQ R W + ++ +++F++ ++
Sbjct: 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDR 245
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S E ++ N +++ NK DL
Sbjct: 246 QTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 4e-08
Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 28/147 (19%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF---- 72
V+++G GK+ L + + + PT S K V
Sbjct: 18 LHKVIMVGSGGVGKSALTLQF------MYDEFVEDYEPT-------KADSYRKKVVLDGE 64
Query: 73 ------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
D GQ +I + Y+ + V F + E++LR ++ +
Sbjct: 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 124
Query: 127 PLLILANKQDLPD--AVSADE---LAR 148
P L++ NK DL D VS +E A
Sbjct: 125 PFLLVGNKSDLEDKRQVSVEEAKNRAE 151
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 4e-08
Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 28/148 (18%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
V+++G GK+ L + + + PT S K V
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQF------MYDEFVEDYEPT-------KADSYRKKVVLDG 49
Query: 73 -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
D GQ +I + Y+ + V F + E++LR ++ +
Sbjct: 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 109
Query: 126 APLLILANKQDLPD--AVSADE---LAR 148
P L++ NK DL D VS +E A
Sbjct: 110 VPFLLVGNKSDLEDKRQVSVEEAKNRAD 137
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-08
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 31/186 (16%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
+ +++ G GK++ L +L + + I T+G+ + + V L W
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLC------KNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ RSI + Y+ +A V+ + D C F + + ++ + + P++++ N
Sbjct: 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH-ETVPIMLVGN 141
Query: 134 KQDLPD--------AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV- 181
K D+ D V LA +F S DG I E+V L
Sbjct: 142 KADIRDTAATEGQKCVPGHFGEKLAMTYGA--------LFCETSAKDGSNIVEAVLHLAR 193
Query: 182 EVMERS 187
EV +R+
Sbjct: 194 EVKKRT 199
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 5e-08
Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 17/149 (11%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG------LNIGRIEVSNSK 69
T + V+++G GK+TL ++++ V L + +
Sbjct: 36 TYYRVVLIGEQGVGKSTLA----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 91
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L W+ G+ + + + A + V + FE + ++ R + P++
Sbjct: 92 LDMWENKGEN--EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 130 ILANKQDLPD--AVSADE---LARYLDLK 153
++ NK DL VS E A D K
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCK 178
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 6e-08
Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 28/152 (18%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---------- 66
V+++G GK+ L + + + PT S
Sbjct: 14 LHKVIMVGSGGVGKSALTLQF------MYDEFVEDYEPT-------KADSYRKKVVLDGE 60
Query: 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
++ D GQ +I + Y+ + V F + E++LR ++ +
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 120
Query: 127 PLLILANKQDLPD--AVSADE---LARYLDLK 153
P L++ NK DL D VS +E A ++
Sbjct: 121 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN 152
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 6e-08
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA---------- 102
VPT G+ ++ + D+GGQ R W +E +++F++ +
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R E+SK ++ Q + +++ NK+DL
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-08
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
+LI+G GK++LL + + + T+G+ + I V + KL W
Sbjct: 16 LKILIIGESGVGKSSLLLRF------TDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R++ YY A V+ V D F L ++ +++ N
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129
Query: 134 KQDLPD-AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMERSK 188
K D + V +E AR + EA S G++ + E LV ++++
Sbjct: 130 KIDKENREVDRNEGLKFARKHSML-------FIEA-SAKTCDGVQCAFEELVEKIIQTPG 181
Query: 189 RTEMLRARAGASTG 202
E +G S+G
Sbjct: 182 LWESENQNSGPSSG 195
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 7e-08
Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 36/190 (18%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF---- 72
V+ILG GKT+L + VEG + PT +E + SK+V
Sbjct: 24 YRKVVILGYRCVGKTSLAHQF------VEGEFSEGYDPT-------VENTYSKIVTLGKD 70
Query: 73 ------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
D GQ + + H V V F+ ++ +K+
Sbjct: 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV 130
Query: 127 PLLILANKQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
P++++ NK DL V A E LA F S + + ++
Sbjct: 131 PVVLVGNKADLSPEREVQAVEGKKLAESWG--------ATFMESSARENQLTQGIFTKVI 182
Query: 182 EVMERSKRTE 191
+ + R + +
Sbjct: 183 QEIARVENSY 192
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 7e-08
Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 46/197 (23%)
Query: 20 VLILGIDKAGKTTL-LEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKL-VFWDLGG 77
VLI G+ +GKT + L+ S V+ +I LN+ + L + L
Sbjct: 153 VLIDGVLGSGKTWVALDVCLS--YKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKL-- 205
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
L I + + + R + L ++L+++ + LL+L
Sbjct: 206 ---LYQIDPNWTSRSD-----HSSNIKLRIHSIQAELRRLLKSKPYENC-LLVL------ 250
Query: 138 PDAVSADELARYLDL--KKL----DERVCMFEAVSGY-----------DGFGIKESVEWL 180
V + +L K L ++V + +S E L
Sbjct: 251 -LNVQNAKAWNAFNLSCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 181 VEVMERSKRTEMLRARA 197
++ ++ R + L
Sbjct: 308 LKYLD--CRPQDLPREV 322
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 25/191 (13%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
+++ G GK++ + + +V+ T L +G + +K D P
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYS----FTTKNLYVGHFDHKLNKYQIIDT---P 84
Query: 80 GL-------RSIWEKYYEEA-----HAVVFVIDAA--CPSRFEDSKTALEKVLRNEDLQG 125
GL R+ E A ++F+ID + C ++ +
Sbjct: 85 GLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI--KSVFSN 142
Query: 126 APLLILANKQDLPDAVSADELARYL--DLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 183
++I NK D + S + L + + F + S G G++++ E+
Sbjct: 143 KSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACEL 202
Query: 184 MERSKRTEMLR 194
++ + +L
Sbjct: 203 LKNDQAESILL 213
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 42/205 (20%), Positives = 78/205 (38%), Gaps = 34/205 (16%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS------- 68
+L LG GKTT L + + + + TVG+ R+ +
Sbjct: 26 IKLLALGDSGVGKTTFLYRY------TDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSG 79
Query: 69 -----KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
L WD GQ RS+ ++ +A + + D F + + + ++ N
Sbjct: 80 KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 139
Query: 124 QGAPLLILANKQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178
+ ++++ NK DLPD V+ + LA + FE S G ++++VE
Sbjct: 140 ENPDIVLIGNKADLPDQREVNERQARELADKYGIP-------YFET-SAATGQNVEKAVE 191
Query: 179 WLV-EVMERSKRTEMLRARAGASTG 202
L+ +M+R ++ G
Sbjct: 192 TLLDLIMKRMEQCVEKTQIPDTVNG 216
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 1e-07
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA---------- 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-07
Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 16/146 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
F V+++G GK+TL P + I V LV +
Sbjct: 24 FKVMLVGESGVGKSTLAGTF------GGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77
Query: 74 DLGGQPGLRS-IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D+ Q + + + A + V F L ++ P++++
Sbjct: 78 DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137
Query: 133 NKQDLPD--AVSADE---LARYLDLK 153
NK DL VS +E LA L K
Sbjct: 138 NKSDLARSREVSLEEGRHLAGTLSCK 163
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 16/143 (11%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KL 70
++ V++ G GK++L+ + V+G D +PT+ + R I S L
Sbjct: 6 SNDYRVVVFGAGGVGKSSLVLRF------VKGTFRDTYIPTIE-DTYRQVISCDKSVCTL 58
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR-NEDLQGAPLL 129
D G ++ + HA + V E+ + +++ ++ P++
Sbjct: 59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM 118
Query: 130 ILANKQDLPD-AVSADE---LAR 148
++ NK D V E +A+
Sbjct: 119 LVGNKCDETQREVDTREAQAVAQ 141
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 22/137 (16%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG---------LNIGRIEVSNS 68
F ++++G GKTT +++ + G + V T+G N G I
Sbjct: 16 FKLVLVGDGGTGKTTFVKRH------LTGEFEKKYVATLGVEVHPLVFHTNRGPI----- 64
Query: 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
K WD GQ + + YY +A + + D +++ ++R + P+
Sbjct: 65 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPI 122
Query: 129 LILANKQDLPDAVSADE 145
++ NK D+ D +
Sbjct: 123 VLCGNKVDIKDRKVKAK 139
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 3e-07
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 69 KLVFWDLGGQPGLRSIW--EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
LV D L W E + A V V A FE + ++ R
Sbjct: 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHV 112
Query: 127 PLLILANKQDLPD--AVSADE---LARYLDLK 153
P++++ NK DL VS +E A D K
Sbjct: 113 PIILVGNKADLARCREVSVEEGRACAVVFDCK 144
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-07
Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 17/145 (11%)
Query: 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS 66
G F E V I+G +GK+ L+ + + G P G I V
Sbjct: 10 GRENLYFQGPELKVGIVGNLSSGKSALVHRY------LTGTYVQEESPEGGRFKKEIVVD 63
Query: 67 NS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
L+ D GG P L+ + AVVFV F+ ++ +
Sbjct: 64 GQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNAS 118
Query: 125 GAPLLILANKQDLPD----AVSADE 145
P++++ + + +
Sbjct: 119 EVPMVLVGTQDAISAANPRVIDDSR 143
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 3e-07
Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
F V+++G GK+TL + I V L+ +
Sbjct: 3 FKVMLVGESGVGKSTLAGTF------GGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVY 56
Query: 74 DLGGQPGLRS-IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D+ Q + + + A + V F L ++ P++++
Sbjct: 57 DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116
Query: 133 NKQDLPD--AVSADE---LARYLDLK 153
NK DL VS +E LA L K
Sbjct: 117 NKSDLARSREVSLEEGRHLAGTLSCK 142
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 3e-07
Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 15/146 (10%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEVSNS--KLVF 72
+ + VL+LG GK+ L V G R I V L+
Sbjct: 1 SVYKVLLLGAPGVGKSALARIFGGVED-------GPEAEAAGHTYDRSIVVDGEEASLMV 53
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
+D+ Q G R + A V V FE + ++ R P++++
Sbjct: 54 YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 113
Query: 133 NKQDLPD--AVSADE---LARYLDLK 153
NK DL VS DE A D K
Sbjct: 114 NKSDLVRSREVSVDEGRACAVVFDCK 139
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-07
Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 23/195 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
+L++G GK+ LL + E + T+G+ I ++++ KL W
Sbjct: 21 MKILLIGDSGVGKSCLLVRFV------EDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A ++ V D F + K + V + + A LL++ N
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGN 133
Query: 134 KQDLPD-AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 189
K D+ V+AD+ LA+ L + F S + + E L ++++
Sbjct: 134 KSDMETRVVTADQGEALAKELGIP--------FIESSAKNDDNVNEIFFTLAKLIQEKID 185
Query: 190 TEMLRARAGASTGSV 204
+ L G++
Sbjct: 186 SNKLVGVGNGKEGNI 200
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-07
Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 11/141 (7%)
Query: 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--K 69
F +++G GKT LL Y+ P +PTV N + V
Sbjct: 26 FQGQAIKCVVVGDGAVGKTCLL----ISYTT--NAFPGEYIPTVFDNYSANVMVDGKPVN 79
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L WD GQ + Y + + P+ FE+ + +R P++
Sbjct: 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 138
Query: 130 ILANKQDLP-DAVSADELARY 149
++ K DL D + ++L
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEK 159
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-07
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
+L++G GK+ LL + E + T+G+ I ++++ KL W
Sbjct: 4 MKILLIGDSGVGKSCLLVRFV------EDKFNPSFITTIGIDFKIKTVDINGKKVKLQIW 57
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A ++ V D F + K + V + + A LL++ N
Sbjct: 58 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGN 116
Query: 134 KQDLPD-AVSADE---LARYLDLK 153
K D+ V+AD+ LA+ L +
Sbjct: 117 KSDMETRVVTADQGEALAKELGIP 140
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 4e-07
Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 37/188 (19%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF---- 72
++ V + G GK++L+ + V+G + +PT +E + +++
Sbjct: 3 DYRVAVFGAGGVGKSSLVLRF------VKGTFRESYIPT-------VEDTYRQVISCDKS 49
Query: 73 ------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN-EDLQG 125
D G ++ + HA + V E+ K E++ D++
Sbjct: 50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES 109
Query: 126 APLLILANKQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
P++++ NK D V + E LAR C F S +KE + L
Sbjct: 110 IPIMLVGNKCDESPSREVQSSEAEALARTWK--------CAFMETSAKLNHNVKELFQEL 161
Query: 181 VEVMERSK 188
+ + +R
Sbjct: 162 LNLEKRRT 169
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 4e-07
Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 11/164 (6%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLV 71
T +++LG GK++++ + V + PT+G R+ ++ K
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRF------VSNDFAENKEPTIGAAFLTQRVTINEHTVKFE 55
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
WD GQ S+ YY A A + V D P F ++ ++++ + + ++
Sbjct: 56 IWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALV 114
Query: 132 ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175
NK D ++AR K +E+ +F S G + +
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVND 158
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-07
Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 25/179 (13%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F +LI+G GKT+ L + + V TVG+ + + KL W
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYA------DDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A + + D F + ++ A ++++ N
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW-DNAQVILVGN 136
Query: 134 KQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMER 186
K D+ + V ++ LA L FEA S + ++++ E LV + ++
Sbjct: 137 KCDMEEERVVPTEKGQLLAEQLGFD-------FFEA-SAKENISVRQAFERLVDAICDK 187
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 5e-07
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F V+++G GKT LL + K + TVG+ ++V KL W
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKD-----GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ RS+ YY +AHA++ + D + F++ + L ++ L++L N
Sbjct: 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGN 124
Query: 134 KQDLPD--AVSADE---LARYLDLK 153
K D V ++ LA+ L
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLP 149
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-07
Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 24/195 (12%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F +LI+G GKT+ L + + V TVG+ + I ++ KL W
Sbjct: 9 FKILIIGNSSVGKTSFLFRYA------DDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIW 62
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G R+I YY A + + D F + ++ A +L++ N
Sbjct: 63 DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW-DNAQVLLVGN 121
Query: 134 KQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
K D+ D VS++ LA +L + F S D +K++ E LV+V+
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFE--------FFEASAKDNINVKQTFERLVDVICEKM 173
Query: 189 RTEMLRARAGASTGS 203
+ A +
Sbjct: 174 SESLDTADPAVTGAK 188
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-07
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F ++++G GKT L+ + +GL P T+G+ I +E++ KL W
Sbjct: 27 FKIVLIGNAGVGKTCLVRRF------TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ RSI + YY A+A++ D C F L ++ + +++ N
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGN 139
Query: 134 KQDLPD--AVSADE---LARYLDLK 153
K DL + VS + D+
Sbjct: 140 KIDLAERREVSQQRAEEFSEAQDMY 164
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 7e-07
Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 34/193 (17%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS------- 68
L LG GKT++L + +G + + TVG+ R+ +
Sbjct: 12 IKFLALGDSGVGKTSVLYQY------TDGKFNSKFITTVGIDFREKRVVYRANGPDGAVG 65
Query: 69 -----KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
L WD G RS+ ++ +A + + D F + + + ++ +
Sbjct: 66 RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS 125
Query: 124 QGAPLLILANKQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178
+ +++ NK DL D AV +E LA + FE S +G I ++E
Sbjct: 126 ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-------YFET-SAANGTNISHAIE 177
Query: 179 WLV-EVMERSKRT 190
L+ +M+R +R+
Sbjct: 178 MLLDLIMKRMERS 190
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 8e-07
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 25/179 (13%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F +L++G GKT+ L + + V TVG+ + + + KL W
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYA------DDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A + + D A F + ++ A ++++ N
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW-DNAQVILVGN 135
Query: 134 KQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMER 186
K DL D V A++ LA L + F S + +K+ E LV + E+
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFE--------FFEASAKENINVKQVFERLVDVICEK 186
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-07
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 34 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY AH ++ V D F + K L+++ R + L++ N
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 146
Query: 134 KQDLPD--AVSADE---LARYLDLK 153
K DL V A L +
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIP 171
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-06
Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 24/190 (12%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F +L++G GKT +L + E + T+G+ I IE+ KL W
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFS------EDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A ++ V D F++ + + + + +IL N
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGN 121
Query: 134 KQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
K D+ D VS + LA +K F S ++ + L ++
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIK--------FMETSAKANINVENAFFTLARDIKAKM 173
Query: 189 RTEMLRARAG 198
AG
Sbjct: 174 DKNWKATAAG 183
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-06
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G+ I IE+ KL W
Sbjct: 17 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY AH ++ V D F + K L+++ R + L++ N
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 129
Query: 134 KQDLPD--AVSADE---LARYLDLK 153
K DL V A L +
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIP 154
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-06
Identities = 28/154 (18%), Positives = 45/154 (29%), Gaps = 31/154 (20%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
E + I G GK+ L+ + + PT +E + D
Sbjct: 27 AEVKLAIFGRAGVGKSALVVRF------LTKRFIWEYDPT-------LESTYRHQATID- 72
Query: 76 GGQPGLRSIW-----------EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
+ I E + V V D FE+ + + +
Sbjct: 73 -DEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK 131
Query: 125 GAPLLILANKQDLPD--AVSADE---LARYLDLK 153
L+++ NK DL VS +E LA L
Sbjct: 132 NVTLILVGNKADLDHSRQVSTEEGEKLATELACA 165
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-06
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLV---F 72
V+ILG GKT+L+ + V + T+G + + V K+
Sbjct: 9 LKVIILGDSGVGKTSLMHRY------VNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGAPLL 129
WD GQ +S+ +Y A V V D S FE+ K+ ++ L + + P +
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122
Query: 130 ILANKQDLPD---AVSADE 145
IL NK D + VS
Sbjct: 123 ILGNKIDAEESKKIVSEKS 141
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-06
Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 16/144 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F L++G GK+ LL + +E T+G+ + V KL W
Sbjct: 26 FKFLVIGSAGTGKSCLLHQF------IENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 79
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ RS+ YY A + V D + L +++ N
Sbjct: 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGN 138
Query: 134 KQDLPD--AVSADE---LARYLDL 152
K+DL V+ E A+ +L
Sbjct: 139 KKDLDPEREVTFLEASRFAQENEL 162
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G+ I +E+ KL W
Sbjct: 9 FKLLLIGNSGVGKSCLLLRF------SDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY +H ++ V D F K L+++ R L++ N
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGN 121
Query: 134 KQDLPD--AVSADE---LARYLDLK 153
K DL D V D A +
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMP 146
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 24/167 (14%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F ++ LG GKT+L+ + + + T+G++ + + + +L W
Sbjct: 17 FKLVFLGEQSVGKTSLITRF------MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 70
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G RS+ Y ++ V V D + F+ + ++ V ++++ N
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGN 129
Query: 134 KQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKE 175
K DL D VS +E A+ L++ MF S G+ +K+
Sbjct: 130 KTDLADKRQVSIEEGERKAKELNV--------MFIETSAKAGYNVKQ 168
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-06
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
V+I+G GKT+L+E+ + + TVG+ I +E+ +L W
Sbjct: 27 LQVIIIGSRGVGKTSLMERFT------DDTFCEACKSTVGVDFKIKTVELRGKKIRLQIW 80
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ SI YY A ++ V D F+D ++ + + + A LL++ N
Sbjct: 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGN 139
Query: 134 KQDLPD--AVSADE 145
K D ++ +
Sbjct: 140 KLDCETDREITRQQ 153
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-06
Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 15/149 (10%)
Query: 13 FTKTEF---HVLILGIDKAGKT--------TLLEKLKSVYSNVEGLPPDRIVPTVGLNIG 61
TK F +G + + + ++ T N
Sbjct: 27 LTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86
Query: 62 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
+ N K WD GQ SI YY A + V D + + + +KT + ++ +
Sbjct: 87 NENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS 146
Query: 122 DLQGAPLLILANKQDLPD-AVSADELARY 149
+ ++++ANK D V E+ +Y
Sbjct: 147 NYI---IILVANKIDKNKFQVDILEVQKY 172
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-06
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F ++++G GKT L + G PDR T+G+ +++ K+ W
Sbjct: 21 FKIIVIGDSNVGKTCLTYRF------CAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 74
Query: 74 DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D GQ R S+ + YY HAVVFV D + F +E+ ++ P +++
Sbjct: 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134
Query: 133 NKQDLPD--AVSADE---LARYLDLK 153
NK DL V D A +
Sbjct: 135 NKCDLRSAIQVPTDLAQKFADTHSMP 160
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F V+++G GK+ LL + T+G+ I+V K W
Sbjct: 6 FKVVLIGDSGVGKSNLLSRF------TRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 59
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R I YY A + V D A +E+ + L+++ + D ++++ N
Sbjct: 60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGN 118
Query: 134 KQDLPD--AVSADE---LARYLDL 152
K DL AV DE A +L
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNNL 142
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 3e-06
Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 33/205 (16%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFW 73
+ +V + G +GK++ + L+ + + EG +V + + N +VFW
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFW 125
Query: 74 DLGGQPGLRSIWEKYYEE---AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
DL G + Y E+ F+I +A + D + + +
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKND-----IDIAKAISMMKKEFYF 180
Query: 131 LANKQDLPDAVSADELARYLDLKKL------------------DERVCMFEAVSGYD--G 170
+ K D AD + D +K+ + + + +S +
Sbjct: 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL---LSNKNVCH 237
Query: 171 FGIKESVEWLVEVMERSKRTEMLRA 195
+ ++ L+ + KR + +
Sbjct: 238 YDFPVLMDKLISDLPIYKRHNFMVS 262
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-06
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
V+++G GKT+LL V+++ G P+ PTV + ++V L WD
Sbjct: 37 VVLVGDGGCGKTSLL----MVFAD--GAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTA 90
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR--NEDLQGAPLLILANK 134
GQ + +Y +A ++ D P+ F+ + N + P++++ K
Sbjct: 91 GQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD---NIFNRWYPEVNHFCKKVPIIVVGCK 147
Query: 135 QDL-PDAVSADELARY 149
DL D ++L R
Sbjct: 148 TDLRKDKSLVNKLRRN 163
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-06
Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 14/138 (10%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG------LNIGRIEVSNSK 69
T + V+++G GK+TL ++++ V L + +
Sbjct: 5 TYYRVVLIGEQGVGKSTLA----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L W+ G+ + + + A + V + FE + ++ R + P++
Sbjct: 61 LDMWENKGEN--EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 130 ILANKQDLPD--AVSADE 145
++ NK DL VS E
Sbjct: 119 LVGNKSDLVRXREVSVSE 136
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-06
Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 16/145 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F V+++G GKT LL + T+G+ + + + + K W
Sbjct: 26 FKVVLIGESGVGKTNLLSRF------TRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G R+I YY A + V D + + L+++ + + ++++ N
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGN 138
Query: 134 KQDLPD--AVSADE---LARYLDLK 153
K DL V +E A L
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLL 163
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-06
Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 24/196 (12%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F ++++G GK+ LL + + T+G+ +E+ K W
Sbjct: 14 FKIVLIGDSGVGKSNLLSRF------TKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIW 67
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A + V D + S +E+ L ++ N D + ++ N
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD-DNVAVGLIGN 126
Query: 134 KQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
K DL AV +E A+ L E S + + ++ E L+ + +
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLL-------FTET-SALNSENVDKAFEELINTIYQKV 178
Query: 189 RTEMLRARAGASTGSV 204
+ ++ G+
Sbjct: 179 SKHQMDLGDSSANGNA 194
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-06
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F ++++G GKT ++++ K G +R T+G+ + +E+ KL W
Sbjct: 30 FKLVLVGDASVGKTCVVQRFK------TGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I + YY A+ + D S F +E V + L++ N
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG-SNIVQLLIGN 142
Query: 134 KQDLPD--AVSADE---LARYLDLK 153
K DL + VS E LA + D+
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDIL 167
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 4e-06
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 16/144 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F +I+G GK+ LL + E T+G+ IEVS KL W
Sbjct: 16 FKYIIIGDMGVGKSCLLHQF------TEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 69
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R++ YY A + V D S + + L + ++++ N
Sbjct: 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGN 128
Query: 134 KQDLPD--AVSADE---LARYLDL 152
K DL V+ +E A L
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGL 152
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-06
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F L++G GK+ LL + +E D T+G+ I V KL W
Sbjct: 11 FKFLVIGNAGTGKSCLLHQF------IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ RS+ YY A + V D + L Q +++ N
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGN 123
Query: 134 KQDLPD--AVSADE---LARYLDL 152
K+DL V+ E A+ +L
Sbjct: 124 KKDLDADREVTFLEASRFAQENEL 147
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-06
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 15/137 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS---KLVF 72
+++LG +GKT+L + + T+GL + RI + + L
Sbjct: 7 LKIVVLGDGASGKTSLTTCF------AQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKV--LRNEDLQGAPLLI 130
WD+GGQ + +KY A V+ V D FE+ + V + E + +
Sbjct: 61 WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120
Query: 131 LANKQDLPD--AVSADE 145
+ NK DL + ++
Sbjct: 121 VGNKIDLEHMRTIKPEK 137
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 6e-06
Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 26/185 (14%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F +LI+G GK++LL + + + T+G+ I +E++ KL W
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFA------DNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY H V+ V D F + K L ++ +N D +++ N
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD--DVCRILVGN 121
Query: 134 KQDLPD--AVSADE---LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMERS 187
K D P+ V ++ A + ++ S + ++E + V+
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMGIQ--------LFETSAKENVNVEEMFNCITELVLRAK 173
Query: 188 KRTEM 192
K
Sbjct: 174 KDNLA 178
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-06
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
++I+G GKT LL V+S P+ VPTV N I IEV +L WD
Sbjct: 28 LVIVGDGACGKTCLL----IVFSK--DQFPEVYVPTVFENYIADIEVDGKQVELALWDTA 81
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
GQ + Y + ++ P E+ +V P++++ NK+
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKK 139
Query: 136 DL-PDAVSADELARY 149
DL D + ELA+
Sbjct: 140 DLRQDEHTRRELAKM 154
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-06
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
++++G GKT LL V+S P+ VPTV N + IEV +L WD
Sbjct: 28 LVVVGDGACGKTCLL----IVFSK--DEFPEVYVPTVFENYVADIEVDGKQVELALWDTA 81
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
GQ + Y + ++ P E+ + +V P++++ANK+
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV--KHFCPNVPIILVANKK 139
Query: 136 DL-PDAVSADELARY 149
DL D ELAR
Sbjct: 140 DLRSDEHVRTELARM 154
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 7e-06
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNE 121
+D+GGQ R W +E AV+F + +R ++K + VL+
Sbjct: 187 LFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 246
Query: 122 DLQGAPLLILANKQDL 137
+ ++ NK D+
Sbjct: 247 CFEKTSFMLFLNKFDI 262
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 7e-06
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
++++G GK++++++ +G+ T+G+ +I+V++ +L+ W
Sbjct: 6 IKMVVVGNGAVGKSSMIQRY------CKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLW 59
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ +I + YY A A V V FE + EKV+ P ++ N
Sbjct: 60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQN 117
Query: 134 KQDLPD--AVSADE---LARYLDLK 153
K DL D + +E LA+ L L+
Sbjct: 118 KIDLLDDSCIKNEEAEGLAKRLKLR 142
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-06
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQG 125
+ WD GQ +S+ +Y A V V D P+ F+ + ++ L D +
Sbjct: 58 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN 117
Query: 126 APLLILANKQDLPD-AVSADELARYL 150
P ++L NK DL + V+ +
Sbjct: 118 FPFVVLGNKIDLENRQVATKRAQAWC 143
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 7e-06
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 13/138 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F ++ LG GKT+L+ + + + T+G++ + + + +L W
Sbjct: 15 FKLVFLGEQSVGKTSLITRF------MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 68
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ RS+ Y ++ V V D + F + ++ +R E ++++ N
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDD-VRTERGSDVIIMLVGN 127
Query: 134 KQDLPD--AVSADELARY 149
K DL D VS +E R
Sbjct: 128 KTDLSDKRQVSTEEGERK 145
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 8e-06
Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 16/145 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F +I+G GK+ LL + + T+G+ + + KL W
Sbjct: 22 FKYIIIGDTGVGKSCLLLQF------TDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 75
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ RSI YY A + V D F + LE ++ ++++ N
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGN 134
Query: 134 KQDLPD--AVSADE---LARYLDLK 153
K DL V +E AR L
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLI 159
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
++++G + GKT LL V++ P+ VPTV N +++ L WD
Sbjct: 10 IVVVGDSQCGKTALL----HVFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
G P ++ Y ++ AV+ D + P + ++ +L++ K
Sbjct: 64 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 121
Query: 136 DL-PDAVSADELARY 149
DL D + EL+ +
Sbjct: 122 DLRTDVSTLVELSNH 136
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-05
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQG 125
+ WD GQ RS+ +Y + + F++ ++ + ++ +
Sbjct: 57 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 116
Query: 126 APLLILANKQDLPD-AVSADE 145
P +IL NK D+ + VS +E
Sbjct: 117 FPFVILGNKIDISERQVSTEE 137
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-05
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 16/144 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
F V+++G GK+ LL + T+G+ I+V K W
Sbjct: 30 FKVVLIGDSGVGKSNLLSRF------TRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G R+I YY A + V D A +E+ + L+++ + D ++++ N
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGN 142
Query: 134 KQDLPD--AVSADE---LARYLDL 152
K DL AV DE A L
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGL 166
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 11/134 (8%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
+++G GKT+L+ Y+ P +PT N + + + L D
Sbjct: 23 CVLVGDGAVGKTSLV----VSYTT--NGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTA 76
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ + Y + PS F++ +R AP++++ + D
Sbjct: 77 GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPKAPIILVGTQSD 135
Query: 137 L-PDAVSADELARY 149
L D EL +
Sbjct: 136 LREDVKVLIELDKC 149
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-05
Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 14/145 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG---LNIGRIEVSNS--KLVF 72
+ + ++G GKTT + ++ ++G TVG + ++ + K
Sbjct: 12 YKICLIGDGGVGKTTYINRV------LDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNV 65
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ + + YY A + D ++ +++ AP+++ A
Sbjct: 66 WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCA 124
Query: 133 NKQDLPD--AVSADELARYLDLKKL 155
NK D+ + +S + L K
Sbjct: 125 NKIDIKNRQKISKKLVMEVLKGKNY 149
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
++++G + GKT LL V++ P+ VPTV N +++ L WD
Sbjct: 31 IVVVGDSQCGKTALL----HVFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 84
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
G P ++ Y ++ AV+ D + P + ++ +L++ K
Sbjct: 85 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 142
Query: 136 DL-PDAVSADELARY 149
DL D + EL+ +
Sbjct: 143 DLRTDVSTLVELSNH 157
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-05
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
++++G + GKT +L V + P+ VPTV N +E +L WD
Sbjct: 30 LVLVGDVQCGKTAML----QVLAK--DCYPETYVPTVFENYTACLETEEQRVELSLWDTS 83
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
G P ++ Y ++ AV+ D + P + + ++L +L++ K
Sbjct: 84 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKT 141
Query: 136 DL-PDAVSADELARY 149
DL D + EL+
Sbjct: 142 DLRTDLSTLMELSHQ 156
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-05
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 16/146 (10%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLV 71
E V +LG GK++++ + V+ I PT+G + + N K +
Sbjct: 22 RELKVCLLGDTGVGKSSIVCRF------VQDHFDHNISPTIGASFMTKTVPCGNELHKFL 75
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
WD GQ S+ YY + A V V D F K ++++ + + + I
Sbjct: 76 IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP-ENIVMAIA 134
Query: 132 ANKQDLPD--AVSADE---LARYLDL 152
NK DL D V + A +
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGA 160
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 4e-05
Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F V++LG GKT+L+ + E D+ + T+G + ++ + L W
Sbjct: 7 FKVVLLGEGCVGKTSLVLRY------CENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ ++ YY +++ + V D F+ K ++++ + L I+ N
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGN 119
Query: 134 KQDLPD--AVSADE---LARYLDLK 153
K DL VS E A + K
Sbjct: 120 KIDLEKERHVSIQEAESYAESVGAK 144
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 4e-05
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 13/140 (9%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLV 71
E V +LG GK++++ + VE I PT+G + ++ N K +
Sbjct: 5 RELKVCLLGDTGVGKSSIMWRF------VEDSFDPNINPTIGASFMTKTVQYQNELHKFL 58
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
WD G R++ YY + A + V D F K + ++ ++ + I
Sbjct: 59 IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIA 117
Query: 132 ANKQDLPD--AVSADELARY 149
NK DL D V + Y
Sbjct: 118 GNKCDLTDVREVMERDAKDY 137
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-05
Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 15/134 (11%)
Query: 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLGGQ 78
++G GKT LL Y+N P+ VPTV + K L +D GQ
Sbjct: 23 VVGDGAVGKTCLL----MSYAN--DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR--NEDLQGAPLLILANKQD 136
+ Y + P+ F++ E+ + E P L++ + D
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQN---VKEEWVPELKEYAPNVPFLLIGTQID 133
Query: 137 L-PDAVSADELARY 149
L D + L
Sbjct: 134 LRDDPKTLARLNDM 147
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-05
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLV 71
+F +++LG GK++L+ + V+G + T+G + + ++ K
Sbjct: 5 CQFKLVLLGESAVGKSSLVLRF------VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFE 58
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
WD GQ S+ YY A A + V D F +K ++++ R + +
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALS 117
Query: 132 ANKQDLPD--AVSADELARY 149
NK DL + AV E Y
Sbjct: 118 GNKADLANKRAVDFQEAQSY 137
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-05
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 11/134 (8%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
+++G GKT LL Y+ P +PTV N + V L WD
Sbjct: 8 CVVVGDGAVGKTCLL----ISYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ + Y + + P+ FE+ + +R P++++ K D
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLD 120
Query: 137 L-PDAVSADELARY 149
L D + ++L
Sbjct: 121 LRDDKDTIEKLKEK 134
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-05
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARY 149
E+A V+FV+DA+ P ED K E ++ L++ NK D+ + ++ +E+
Sbjct: 322 EKADIVLFVLDASSPLDEEDRKIL-------ERIKNKRYLVVINKVDVVEKINEEEIKNK 374
Query: 150 LD 151
L
Sbjct: 375 LG 376
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 8e-05
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLV 71
K ++++G GKT LL +S G P VPTV N ++ N L
Sbjct: 21 KKALKIVVVGDGAVGKTCLL----LAFSK--GEIPTAYVPTVFENFSHVMKYKNEEFILH 74
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLI 130
WD GQ + Y ++ V+ + F++ T ++ + A ++
Sbjct: 75 LWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI--KHYIDTAKTVL 132
Query: 131 LANKQDLPD 139
+ K DL
Sbjct: 133 VGLKVDLRK 141
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 8e-05
Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 15/139 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSNS--KLVFW 73
V ++G GK+ L+ S++++ T G + + + + ++ + +
Sbjct: 21 CKVAVVGEATVGKSALI----SMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELF 76
Query: 74 --DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKV--LRNEDLQGAPLL 129
D G + +Y+ + + V D + FE K E + R + + +
Sbjct: 77 LLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAV 136
Query: 130 ILANKQDLPD---AVSADE 145
++ANK DLP V D
Sbjct: 137 LVANKTDLPPQRHQVRLDM 155
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 1e-04
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 14/95 (14%)
Query: 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARY 149
A V+ IDAA D + E ++ PL+++ NK DL + L
Sbjct: 302 NTADLVLLTIDAATGWTTGDQEIY-------EQVKHRPLILVMNKIDLVEKQLITSLEYP 354
Query: 150 LDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184
++ ++ + GI ++E++
Sbjct: 355 ENITQI-------VHTAAAQKQGIDSLETAILEIV 382
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 12/124 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
+ +G GKT LL Y++ P VPTV N V N L WD
Sbjct: 11 CVTVGDGAVGKTCLL----ISYTS--NTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTA 64
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
GQ + Y A + + +E+ + ++ G P++++ K
Sbjct: 65 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKL 122
Query: 136 DLPD 139
DL D
Sbjct: 123 DLRD 126
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 10/123 (8%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
+ +G GKT +L Y++ P +PTV N + V L WD
Sbjct: 12 CVTVGDGAVGKTCML----ICYTS--NKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTA 65
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ + Y A V + +E+ LR P++++ K D
Sbjct: 66 GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLD 124
Query: 137 LPD 139
L D
Sbjct: 125 LRD 127
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 2e-04
Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 31/150 (20%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
E ++ ILG AGK+ L K + P +E + S
Sbjct: 20 LEVNLAILGRRGAGKSALTVKF------LTKRFISEYDPN-------LEDTYSSEETVDH 66
Query: 73 -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN--EDL 123
D R+ E+Y AHA + V F+ S + LE + + E
Sbjct: 67 QPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ 125
Query: 124 QGAPLLILANKQDLPD--AVSADE---LAR 148
+ P L+L NK D+ V+ E LA
Sbjct: 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAG 155
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 3e-04
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARY 149
EA +++++D ++ E A L +ANK D AD L R
Sbjct: 311 AEADLILYLLDLGTERLDDELTEIRELK---AAHPAAKFLTVANKLDRAAN--ADALIRA 365
Query: 150 LDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184
+ E + +S +G GI + + +++
Sbjct: 366 IADGTGTEVI----GISALNGDGIDTLKQHMGDLV 396
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 3e-04
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140
E+A V+F++D + ++ + P+ ++ NK D+
Sbjct: 82 EQADRVLFMVDGTTTDAVDPAE--IWPEFIARLPAKLPITVVRNKADITGE 130
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 38.4 bits (90), Expect = 4e-04
Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 33/195 (16%)
Query: 14 TKTEFHVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVG------LNIGRIEVS 66
+ E + +LG ++GK++L+ + L Y +E T + +
Sbjct: 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLE--------KTESEQYKKEMLVDGQTH- 54
Query: 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKV--LRNEDLQ 124
++ + G P K+ A AV+FV + F+ ++ LR E
Sbjct: 55 --LVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRG 107
Query: 125 GAP--LLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
G L+ ++ V AR L C + G + + +
Sbjct: 108 GLALALVGTQDRISASSPRVVGDAR-ARALXADMKR---CSYYETXATYGLNVDRVFQEV 163
Query: 181 VEVMERSKRTEMLRA 195
+ + ++ + L A
Sbjct: 164 AQKVVTLRKQQQLLA 178
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 37.9 bits (89), Expect = 6e-04
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
K WD GQ S+ YY A A + V D + FE +K ++++ + +
Sbjct: 62 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN-PNMVM 120
Query: 129 LILANKQDLPD--AVSADELARY 149
+ NK DL D V+A++ Y
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQTY 143
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255 | Back alignment and structure |
|---|
Score = 38.1 bits (88), Expect = 9e-04
Identities = 11/138 (7%), Positives = 35/138 (25%), Gaps = 8/138 (5%)
Query: 51 RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
+ L + + K + + + F+D
Sbjct: 124 KRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQ 183
Query: 111 KTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168
+ + P++++ K D + + + + E S
Sbjct: 184 LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAH-----TFALSKKNLQVVET-SAR 237
Query: 169 DGFGIKESVEWLVEVMER 186
+ + LV+++++
Sbjct: 238 SNVNVDLAFSTLVQLIDK 255
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 204 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-29 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 2e-28 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 3e-27 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 6e-24 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 7e-24 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 4e-21 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 6e-21 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 3e-20 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 4e-19 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 2e-18 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 2e-18 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-18 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 6e-18 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 4e-17 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 3e-16 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 9e-16 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 2e-15 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 2e-15 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 3e-15 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 4e-15 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-14 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 2e-14 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 6e-14 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 6e-14 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 9e-13 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 2e-12 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 3e-12 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 5e-12 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 6e-12 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 3e-11 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 5e-11 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 8e-11 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 1e-10 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 4e-10 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 5e-10 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 6e-10 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 1e-09 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 3e-09 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 3e-09 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 1e-08 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 1e-08 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 2e-08 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 3e-08 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 5e-08 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 5e-08 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 6e-07 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 7e-07 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 1e-06 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 2e-06 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 7e-06 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 1e-05 | |
| d1puja_ | 273 | c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti | 2e-05 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 4e-05 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 4e-05 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 5e-05 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 2e-04 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 2e-04 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 3e-04 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 6e-04 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 6e-04 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 0.001 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 105 bits (261), Expect = 3e-29
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN 67
+ IF E +L+LG+D AGKTT+L KLK S +PTVG N+ + N
Sbjct: 3 VLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQS-------VTTIPTVGFNVETVTYKN 55
Query: 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP 127
K WD+GGQ +R +W YY ++FV+D A R ++++ L +++ + +++ A
Sbjct: 56 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI 115
Query: 128 LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
+LI ANKQDLPDA+ E+ L L ++ +R + G G+ E + WL
Sbjct: 116 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 170
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 102 bits (255), Expect = 2e-28
Identities = 68/187 (36%), Positives = 107/187 (57%), Gaps = 8/187 (4%)
Query: 3 SLFYGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG 61
++F ++ ++ + E +LILG+D AGKTT+L +L+ PT+G N+
Sbjct: 2 NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-------VTTKPTIGFNVE 54
Query: 62 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
+ N KL WDLGGQ +R W YY + AV+FV+D+ R + L +L+ E
Sbjct: 55 TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE 114
Query: 122 DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
+LQ A LL+ ANKQD P A+SA E+++ L+L +L +R A S G GI E ++WL+
Sbjct: 115 ELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 174
Query: 182 EVMERSK 188
+V++ +
Sbjct: 175 DVIKEEQ 181
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 100 bits (248), Expect = 3e-27
Identities = 59/182 (32%), Positives = 101/182 (55%), Gaps = 8/182 (4%)
Query: 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
LF +W+ +F E V+I+G+D AGKTT+L + PT+G N+ I
Sbjct: 3 LFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFS-------MNEVVHTSPTIGSNVEEI 54
Query: 64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
++N++ + WD+GGQ LRS W YY V+ V+D+ R ++ L K+L +EDL
Sbjct: 55 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 114
Query: 124 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 183
+ A LLI ANKQD+ + ++ E++++L L + + +A G G+ + +EW++
Sbjct: 115 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 174
Query: 184 ME 185
++
Sbjct: 175 LK 176
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 91.3 bits (225), Expect = 6e-24
Identities = 64/171 (37%), Positives = 94/171 (54%), Gaps = 8/171 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTT+L+K G D I PT+G NI +E KL WD+G
Sbjct: 2 ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVG 54
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ LRS W Y+E +++V+D+A R +D + L+ +L E L GA LLI ANKQD
Sbjct: 55 GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 114
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE-VMER 186
LP A+S + + L+L + + S G + ++WL++ + R
Sbjct: 115 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 91.2 bits (225), Expect = 7e-24
Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
E +L+LG+D AGKTTLL++L I PT G NI ++ KL W
Sbjct: 13 PDQEVRILLLGLDNAGKTTLLKQLA-------SEDISHITPTQGFNIKSVQSQGFKLNVW 65
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D+GGQ +R W Y+E +++VID+A RFE++ L ++L E L P+LI AN
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
KQDL A A E+A L+L + +RV ++ S G G+++ + W+ +
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 83.5 bits (205), Expect = 4e-21
Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Query: 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
+L++G+D AGKTT+L KLK +PT+G N+ +E N WD+GGQ
Sbjct: 2 RILMVGLDAAGKTTILYKLK-------LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54
Query: 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138
+R +W Y++ ++FV+D+ R +++ L ++L ++L+ A LL+ ANKQDLP
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114
Query: 139 DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
+A++A E+ L L L R +A G G+ E ++WL
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 84.4 bits (208), Expect = 6e-21
Identities = 27/136 (19%), Positives = 63/136 (46%), Gaps = 20/136 (14%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
+ +L+LG ++GK+T++++++ +V T G+ + +V +D
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRI----------LHVVLTSGIFETKFQVDKVNFHMFD 53
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALEKVLRNEDLQ 124
+GGQ R W + + + A++FV+ ++ +R +++ + + N L+
Sbjct: 54 VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 113
Query: 125 GAPLLILANKQDLPDA 140
+++ NKQDL
Sbjct: 114 TISVILFLNKQDLLAE 129
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 81.3 bits (199), Expect = 3e-20
Identities = 55/166 (33%), Positives = 93/166 (56%), Gaps = 6/166 (3%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E + ++G+ +GKTT + + G + ++PTVG N+ +I N + WD+G
Sbjct: 2 EMELTLVGLQYSGKTTFVNVI------ASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG 55
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQP RS+WE+Y A+V+++DAA + E SK L +L LQG P+L+L NK+D
Sbjct: 56 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 115
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
LP A+ EL ++L + +R ++S + I +++WL++
Sbjct: 116 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 161
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 79.0 bits (193), Expect = 4e-19
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE 64
F GL+K ++ LG+D AGKTTLL LK + VPT+ +
Sbjct: 6 FLGLYKK-----TGKLVFLGLDNAGKTTLLHMLKDDR-------LGQHVPTLHPTSEELT 53
Query: 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
++ +DLGG R +W+ Y + +VF++D A R +SK L+ ++ +E +
Sbjct: 54 IAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA 113
Query: 125 GAPLLILANKQDLPDAVSADELARYLDL------------KKLDERVCMFEAVSGYDGFG 172
P+LIL NK D P+A+S + L L K+L+ R S G
Sbjct: 114 NVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQG 173
Query: 173 IKESVEWLVEVME 185
E W+ + ++
Sbjct: 174 YGEGFRWMAQYID 186
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.7 bits (188), Expect = 2e-18
Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 15/177 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
F +L++G GKT +L + E + T+G++ + KL W
Sbjct: 7 FKLLLIGDSGVGKTCVLFRF------SEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A ++ V D F++ + + + + +++
Sbjct: 61 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 120
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMERSKR 189
+ E + F S ++ + L ++ + +
Sbjct: 121 CDVNDKRQVSKERGEK----LALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.4 bits (187), Expect = 2e-18
Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 16/174 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
+L++G GK+ LL + VE + T+G++ V KL W
Sbjct: 3 MKILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIW 56
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A ++ V D F + K K + A LL++ N
Sbjct: 57 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW-FKTVNEHANDEAQLLLVGN 115
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMER 186
K D+ V + E F S + + E L + E+
Sbjct: 116 KSDMETRVVTADQGE----ALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.3 bits (186), Expect = 2e-18
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 14/170 (8%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
+L LG+D AGKTTLL LK+ + PT + + N K +DLGG
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDR-------LATLQPTWHPTSEELAIGNIKFTTFDLGGHI 55
Query: 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139
R +W+ Y+ E + +VF++DAA P RF++++ L+ + +L+ P +IL NK D P+
Sbjct: 56 QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 115
Query: 140 AVSADELARYLDLKKL-------DERVCMFEAVSGYDGFGIKESVEWLVE 182
AVS EL L L +R S G E+ +WL +
Sbjct: 116 AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.1 bits (186), Expect = 6e-18
Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 14/180 (7%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
F +L++G GK+ LL + + + + T+G++ V KL W
Sbjct: 7 FKLLLIGNSGVGKSCLLLRF------SDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 60
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY +H ++ V D F K L+++ R L++ N
Sbjct: 61 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGN 119
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTEML 193
K DL D + ++ E S D ++++ + ++ S + L
Sbjct: 120 KCDLKDKRVVEYDVAKEFAD--ANKMPFLE-TSALDSTNVEDAFLTMARQIKESMSQQNL 176
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.3 bits (179), Expect = 4e-17
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 7/172 (4%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
T +LI+G GK++LL + + I + ++ + +KL WD
Sbjct: 6 TTLKILIIGESGVGKSSLLLRF--TDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDT 63
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ R++ YY A V+ V D F L ++ +++ NK
Sbjct: 64 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 123
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMER 186
D + E+ R LK + +F S G++ + E LV ++++
Sbjct: 124 DKENR----EVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.7 bits (172), Expect = 3e-16
Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 5/169 (2%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
F V+++G GKT LL + K + + G + + ++ KL WD G
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKD-GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q RS+ YY +AHA++ + D + F++ + L ++ A +L+
Sbjct: 66 QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 125
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186
+ V E L E F S G + + + + ++R
Sbjct: 126 HERVVKREDGEKL----AKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.3 bits (171), Expect = 9e-16
Identities = 27/144 (18%), Positives = 61/144 (42%), Gaps = 20/144 (13%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+L+LG ++GK+T L++++ ++ PT G++ E+ N D+G
Sbjct: 2 LVKILLLGAGESGKSTFLKQMRIIHG---------QDPTKGIHEYDFEIKNVPFKMVDVG 52
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRF----------EDSKTALEKVLRNEDLQGA 126
GQ R W + ++ +++F++ ++ + +S E ++ N
Sbjct: 53 GQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 112
Query: 127 PLLILANKQ-DLPDAVSADELARY 149
+++ NK L + V + Y
Sbjct: 113 SIILFLNKTDLLEEKVQVVSIKDY 136
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.6 bits (169), Expect = 2e-15
Identities = 32/203 (15%), Positives = 76/203 (37%), Gaps = 41/203 (20%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG ++GK+T +++++ ++ + VPT G+ ++ + D+G
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRIIHGS--------GVPTTGIIEYPFDLQSVIFRMVDVG 53
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSR----------FEDSKTALEKVLRNEDLQGA 126
GQ R W +E +++F++ + + E+SK ++ Q +
Sbjct: 54 GQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 113
Query: 127 PLLILAN-KQDLPDAVSADELARY----------------------LDLKKLDERVCMFE 163
+++ N K L + + L Y +DL +++
Sbjct: 114 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSH 173
Query: 164 AVSGYDGFGIKESVEWLVEVMER 186
D I+ + + + +
Sbjct: 174 FTCATDTENIRFVFAAVKDTILQ 196
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 68.7 bits (167), Expect = 2e-15
Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 7/170 (4%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
F +LI+G GKT+ L + + + + KL WD G
Sbjct: 6 FKILIIGNSSVGKTSFLFRY--ADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q R+I YY A + + D F + ++ A +L++ NK D+
Sbjct: 64 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW-DNAQVLLVGNKCDM 122
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE-VMER 186
D L F S D +K++ E LV+ + E+
Sbjct: 123 EDERVVSSERGRQLADHLG---FEFFEASAKDNINVKQTFERLVDVICEK 169
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.8 bits (167), Expect = 3e-15
Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 24/188 (12%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV------------ 65
+L LG GKTT L + + + + TVG++ V
Sbjct: 6 IKLLALGDSGVGKTTFLYRY------TDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSG 59
Query: 66 --SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
L WD GQ RS+ ++ +A + + D F + + + ++ N
Sbjct: 60 KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 119
Query: 124 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-E 182
+ ++++ NK DLPD +E + D+ + S G ++++VE L+
Sbjct: 120 ENPDIVLIGNKADLPDQREVNE---RQARELADKYGIPYFETSAATGQNVEKAVETLLDL 176
Query: 183 VMERSKRT 190
+M+R ++
Sbjct: 177 IMKRMEQC 184
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.9 bits (167), Expect = 4e-15
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
VL +G+ +GKT L +L + ++ + +V+N++ L P
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQ-------YRDTQTSITDSSAIYKVNNNRGNSLTLIDLP 55
Query: 80 GLRSI----WEKYYEEAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGA--PLLILA 132
G S+ +++ A AVVFV+D+A R +D L +VL + LLI
Sbjct: 56 GHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 115
Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
NKQD+ A SA + + L+ + RV A S D
Sbjct: 116 NKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 153
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 66.7 bits (161), Expect = 1e-14
Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 8/173 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +LILG+D AGKTT+L +L+ +PT+G N+ + N K WDLG
Sbjct: 5 EMRILILGLDGAGKTTILYRLQ-------VGEVVTTIPTIGFNVETVTYKNLKFQVWDLG 57
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
G +R W YY AV++V+D+ R SK+ L +L E+L+ A L++ ANKQD
Sbjct: 58 GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQD 117
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 189
+ A+++ E+A L L L +R S G G+ E++EWLVE + +S++
Sbjct: 118 MEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL-KSRQ 169
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.1 bits (160), Expect = 2e-14
Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 7/175 (4%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
F L++G GK+ LL + + + I G I + KL WD G
Sbjct: 6 FKFLVIGNAGTGKSCLLHQF--IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q RS+ YY A + V D + L Q +++ NK+DL
Sbjct: 64 QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDL 122
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMERSKRTE 191
L ++ + MF S G ++E+ +++ + + E
Sbjct: 123 DADREVTFLEASRFAQENE---LMFLETSALTGENVEEAFVQCARKILNKIESGE 174
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.9 bits (157), Expect = 6e-14
Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 6/171 (3%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
F V+++G GK+ LL + + I +++ K WD G
Sbjct: 5 FKVVLIGDSGVGKSNLLSRF--TRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 62
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q R I YY A + V D A +E+ + L+++ + D ++++ NK DL
Sbjct: 63 QERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDL 121
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
+ ++ F S D ++E+ + ++ + R
Sbjct: 122 RHLRAVPTDEAR---AFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 169
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (157), Expect = 6e-14
Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 15/176 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
F ++++G GKT L+ + +GL P T+G++ V KL W
Sbjct: 6 FKIVLIGNAGVGKTCLVRRF------TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 59
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ RSI + YY A+A++ D C F L ++ + + +L+
Sbjct: 60 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 119
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMERSK 188
+ + A + + + + S + +++ L ++ ++
Sbjct: 120 IDLAERREVSQQRAE----EFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 171
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.9 bits (149), Expect = 9e-13
Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 22/144 (15%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG ++GK+T+++++K ++ G+ + +D+G
Sbjct: 2 EVKLLLLGAGESGKSTIVKQMKIIH-----------EAGTGIVETHFTFKDLHFKMFDVG 50
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDA----------ACPSRFEDSKTALEKVLRNEDLQGA 126
GQ R W +E A++F + +R +S + + N+
Sbjct: 51 GQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDT 110
Query: 127 PLLILAN-KQDLPDAVSADELARY 149
+++ N K + + L
Sbjct: 111 SIILFLNKKDLFEEKIKKSPLTIC 134
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.7 bits (146), Expect = 2e-12
Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 7/173 (4%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
F +I+G GK+ LL + + + I+ KL WD G
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMVNIDGKQIKLQIWDTAG 61
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q RSI YY A + V D F + LE R ++++ NK DL
Sbjct: 62 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED-ARQHSSSNMVIMLIGNKSDL 120
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMERSKR 189
++ +F S ++E+ E+ + ++
Sbjct: 121 ESRRDVKREEGEAFAREHG---LIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (144), Expect = 3e-12
Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 12/169 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW--- 73
E+ V++LG GK+ L + V G ++ PT+ + +S
Sbjct: 3 EYKVVVLGSGGVGKSALTVQF------VTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEIL 56
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G S+ + Y + + V F+D K ++++R + + P++++ N
Sbjct: 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
K DL ++ C F S + E +V
Sbjct: 117 KVDLESEREVSSSEGRALAEEWG---CPFMETSAKSKTMVDELFAEIVR 162
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (143), Expect = 5e-12
Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 13/174 (7%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVF 72
TE+ ++++G GK+ L +L ++ D PT+ + + V + + L
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQL------IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D GQ ++ ++Y + V FED E++ R +D P++++
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186
NK DL A+ + S G++++ LV + +
Sbjct: 116 NKCDLAARTVESRQAQ----DLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 59.2 bits (142), Expect = 6e-12
Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 13/173 (7%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG---LNIGRIEVSNSKLVFWD 74
V+++G GK+ L + + + PT ++ ++ D
Sbjct: 5 HKVIMVGSGGVGKSALTLQF------MYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 58
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
GQ +I + Y+ + V F + E++LR ++ + P L++ NK
Sbjct: 59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118
Query: 135 QDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMER 186
DL D + + + S + + L+ E+ R
Sbjct: 119 SDLEDKRQVSVEEAKNRADQWN---VNYVETSAKTRANVDKVFFDLMREIRAR 168
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (137), Expect = 3e-11
Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 6/165 (3%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
F +I+G GK+ LL + P I G I + KL WD G
Sbjct: 5 FKYIIIGDMGVGKSCLLHQF--TEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 62
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q R++ YY A + V D S + + L RN ++++ NK DL
Sbjct: 63 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-ARNLTNPNTVIILIGNKADL 121
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
++ +F S G ++++ +
Sbjct: 122 EAQRDVTYEEAKQFAEENG---LLFLEASAKTGENVEDAFLEAAK 163
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.9 bits (136), Expect = 5e-11
Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 6/165 (3%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
F ++ LG GKT+L+ + +Y + + I +E +L WD G
Sbjct: 1 FKLVFLGEQSVGKTSLITRF--MYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 58
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q RS+ Y ++ A V V D + F+ + ++ V ++++ NK DL
Sbjct: 59 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDL 117
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
D K+L+ MF S G+ +K+ +
Sbjct: 118 ADKRQVSIEEGERKAKELN---VMFIETSAKAGYNVKQLFRRVAA 159
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 8e-11
Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 11/174 (6%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV---F 72
E+ +++LG GK+ L + V+G+ ++ PT+ + + + +
Sbjct: 2 REYKLVVLGSGGVGKSALTVQF------VQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEI 55
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D G ++ + Y + V S F D + E++LR +D + P++++
Sbjct: 56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115
Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186
NK DL D + ++ C F S + E LV + R
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCN--CAFLESSAKSKINVNEIFYDLVRQINR 167
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.8 bits (133), Expect = 1e-10
Identities = 33/167 (19%), Positives = 64/167 (38%), Gaps = 3/167 (1%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
T +++LG GK++++ + V ++ I I K WD
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRF--VSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDT 59
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ S+ YY A A + V D P F ++ ++++ + + ++ NK
Sbjct: 60 AGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKI 118
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
D+ ++AR K +E+ +F S G + + + E
Sbjct: 119 DMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.9 bits (134), Expect = 4e-10
Identities = 29/202 (14%), Positives = 66/202 (32%), Gaps = 27/202 (13%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
+ +V + G +GK++ + L+ + + EG +V + +VFWD
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 113
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILAN 133
L G + Y E+ + + RF+ + + K + +
Sbjct: 114 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM---MKKEFYFVRT 170
Query: 134 KQDLPDAVSADELARYLDLKKL------------------DERVCMFEAVSGYD--GFGI 173
K D AD + D +K+ + + + +S + +
Sbjct: 171 KVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL---LSNKNVCHYDF 227
Query: 174 KESVEWLVEVMERSKRTEMLRA 195
++ L+ + KR + +
Sbjct: 228 PVLMDKLISDLPIYKRHNFMVS 249
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (128), Expect = 5e-10
Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 6/172 (3%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
+F +++LG GK++L+ + V I ++ + K WD
Sbjct: 5 CQFKLVLLGESAVGKSSLVLRF--VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ S+ YY A A + V D F +K ++++ R + + NK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKA 121
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187
DL + + D +F S + E + + + ++
Sbjct: 122 DLANKRAVDFQEAQSYADDNS---LLFMETSAKTSMNVNEIFMAIAKKLPKN 170
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.9 bits (128), Expect = 6e-10
Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 16/180 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG-----LNIGRIEVSNSKLVF 72
V+ILG GKT+L+ + V + T+G + + +
Sbjct: 3 LKVIILGDSGVGKTSLMHRY------VNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 56
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGAPLL 129
WD GQ +S+ +Y A V V D S FE+ K+ ++ L + + P +
Sbjct: 57 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 116
Query: 130 ILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMERSK 188
IL NK D ++ +L K + +F S + + + E + +++++
Sbjct: 117 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSALQQNQ 175
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.2 bits (126), Expect = 1e-09
Identities = 38/183 (20%), Positives = 74/183 (40%), Gaps = 17/183 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KLVFW 73
V+ILG GKT+L+ + V ++ T+G + EV + W
Sbjct: 3 LKVIILGDSGVGKTSLMNQY------VNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 56
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGAPLLI 130
D GQ +S+ +Y A V V D P+ F+ + ++ L D + P ++
Sbjct: 57 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 116
Query: 131 LANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMERSKR 189
L NK DL + A + A+ K + + S + ++++ + + +++
Sbjct: 117 LGNKIDLENRQVATKRAQAWCYSKNN---IPYFETSAKEAINVEQAFQTIARNALKQETE 173
Query: 190 TEM 192
E+
Sbjct: 174 VEL 176
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.0 bits (123), Expect = 3e-09
Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 25/175 (14%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK-----LVF 72
F ++++G GKT L + G PDR T+G++ V ++
Sbjct: 3 FKIIVIGDSNVGKTCLTYRF------CAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 56
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
G + +S+ + YY HAVVFV D + F +E+ ++ P +++
Sbjct: 57 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 116
Query: 133 NKQDLPDAVS-----ADELARYLDLKKLDERVCMFE--AVSGYDGFGIKESVEWL 180
NK DL A+ A + A + +FE A + D ++ L
Sbjct: 117 NKCDLRSAIQVPTDLAQKFADTHSMP-------LFETSAKNPNDNDHVEAIFMTL 164
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (123), Expect = 3e-09
Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 8/168 (4%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
F V++LG GK++L+ + V + + I ++ + WD G
Sbjct: 7 FKVILLGDGGVGKSSLMNRY--VTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG 64
Query: 78 QPGLRSIWEKYYEEAHAVV---FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
Q RS+ +Y + + V D+ + K ++ + P +IL NK
Sbjct: 65 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 124
Query: 135 QDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
D+ + + E A+ D + S D + + E V
Sbjct: 125 IDISERQVSTEEAQAWCRDNGD---YPYFETSAKDATNVAAAFEEAVR 169
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.8 bits (120), Expect = 1e-08
Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 25/183 (13%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNSKLVFWDLGG 77
++I G +GKT+LL L + D + PTV + + S + D G
Sbjct: 6 IIIAGPQNSGKTSLLTLLTT----------DSVRPTVVSQEPLSAADYDGSGVTLVDFPG 55
Query: 78 QPGLRSIWEKYY-----EEAHAVVFVIDAACPSRFEDSKTALEKV---LRNEDLQGAPLL 129
LR Y + V P + + L + + G +L
Sbjct: 56 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115
Query: 130 ILANKQDLPDAVSADELARYL--DLKKLDERV---CMFEAVSGYDGFGIKESVEWLVEVM 184
I NK +L A ++ L +++K+ ER + + +++ L
Sbjct: 116 IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTD 175
Query: 185 ERS 187
Sbjct: 176 GFK 178
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (118), Expect = 1e-08
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 7/169 (4%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
F V++LG GKT+L+ + + + + I L WD G
Sbjct: 4 FKVVLLGEGCVGKTSLVLRY--CENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q ++ YY +++ + V D F+ K ++++ + + ++ NK DL
Sbjct: 62 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV-GNKIDL 120
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVME 185
+ + S GI+E L ++E
Sbjct: 121 EKERHVSIQEAESYAESVG---AKHYHTSAKQNKGIEELFLDLCKRMIE 166
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.0 bits (118), Expect = 2e-08
Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 11/174 (6%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV---F 72
+ ++++G GK+ L + + + PT+ + + +++
Sbjct: 3 PTYKLVVVGDGGVGKSALTIQF------FQKIFVPDYDPTIEDSYLKHTEIDNQWAILDV 56
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D GQ ++ E+Y + V + FE + +LR +D + P++++A
Sbjct: 57 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 116
Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186
NK DL K + + E + + ++ LV V+ +
Sbjct: 117 NKVDLMHLRKVTRDQGKEMATKYN--IPYIETSAKDPPLNVDKTFHDLVRVIRQ 168
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 3e-08
Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 12/175 (6%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL- 75
++++G GK+ L + ++ PT+ + +I + D+
Sbjct: 6 THKLVVVGGGGVGKSALTIQF------IQSYFVSDYDPTIEDSYTKICSVDGIPARLDIL 59
Query: 76 --GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
GQ ++ E+Y H + V F + ++LR +D P++++ N
Sbjct: 60 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 119
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
K DL + S + E+ E LV + + +
Sbjct: 120 KADLESQRQVPRSEASAFGASHH---VAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (115), Expect = 5e-08
Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 13/176 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKL---VFW 73
++ V + G GK++L+ + V+G + +PTV ++ + +
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRF------VKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 55
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR-NEDLQGAPLLILA 132
D G ++ + HA + V E+ K E++ D++ P++++
Sbjct: 56 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 115
Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
NK D + + C F S +KE + L+ + +R
Sbjct: 116 NKCDESPSREVQSSEAEALARTWK---CAFMETSAKLNHNVKELFQELLNLEKRRT 168
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 48.5 bits (114), Expect = 5e-08
Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 15/180 (8%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ- 78
V ++G AGK++LL + + + P + P +G + D+ G
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG---VVEVSEEERFTLADIPGII 60
Query: 79 ---PGLRSIWEKYYEE---AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
+ + ++ +++V+DAA E + L P L+
Sbjct: 61 EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120
Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTEM 192
NK DL + + L VS G G+ E L ++ + EM
Sbjct: 121 NKVDLLEEEAVKA-----LADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPEM 175
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 6e-07
Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 9/165 (5%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
F ++++G GKTT +++ + E + V + K WD G
Sbjct: 4 FKLVLVGDGGTGKTTFVKRH--LTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q + + YY +A + + D +++ ++R + P+++ NK D+
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDI 119
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
D + + ++ + +S + ++ WL
Sbjct: 120 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 159
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 7e-07
Identities = 35/179 (19%), Positives = 55/179 (30%), Gaps = 22/179 (12%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
+++G GKT LL P VPTV N + + L +D
Sbjct: 6 CVVVGDGAVGKTCLLISY------TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 59
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ + Y + + PS FE+ K + + P L++ + D
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQID 118
Query: 137 LPDAVSADELARY-----------LDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184
L D S E L + + V E S G+K + +
Sbjct: 119 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVE-CSALTQKGLKNVFDEAILAA 176
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 1e-06
Identities = 29/177 (16%), Positives = 67/177 (37%), Gaps = 12/177 (6%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LV 71
+ ++ ++++G GK+ L + ++ PT+ + + V + + L
Sbjct: 3 QEKYRLVVVGGGGVGKSALTIQF------IQSYFVTDYDPTIEDSYTKQCVIDDRAARLD 56
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
D GQ ++ E+Y + V FE+ ++LR +D P++++
Sbjct: 57 ILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILI 116
Query: 132 ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
NK DL + ++L + S + ++ LV V+ + +
Sbjct: 117 GNKADLDHQRQVTQEEGQQLARQLK---VTYMEASAKIRMNVDQAFHELVRVIRKFQ 170
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 2e-06
Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 3/173 (1%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
T + V+++G GK+TL V+ +++ T + S + ++
Sbjct: 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
+ + + + A + V + FE + ++ R + P++++ NK
Sbjct: 62 ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 121
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
DL D C F S +KE E +V + +
Sbjct: 122 DLVRCREVSVSEGRACAVVFD---CKFIETSAAVQHNVKELFEGIVRQVRLRR 171
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.4 bits (98), Expect = 7e-06
Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 7/163 (4%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
++++G GK++++++ + + ++ + +L+ WD GQ
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLE--RQIQVNDEDVRLMLWDTAGQE 62
Query: 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139
+I + YY A A V V FE + EK ++ P ++ NK DL D
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK--VVAEVGDIPTALVQNKIDLLD 120
Query: 140 AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
K+L F S + + E ++L E
Sbjct: 121 DSCIKNEEAEGLAKRLK---LRFYRTSVKEDLNVSEVFKYLAE 160
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.5 bits (96), Expect = 1e-05
Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 6/166 (3%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E V +LG GK++++ + V + + I + + + K + WD
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRF--VEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 61
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
G R++ YY + A + V D F K + ++ R + I NK D
Sbjct: 62 GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVREL-RQHGPPSIVVAIAGNKCD 120
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
L D E + +F S + I E +
Sbjct: 121 LTDVREVMERDAKDYADSIH---AIFVETSAKNAININELFIEISR 163
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Score = 41.7 bits (97), Expect = 2e-05
Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 8/123 (6%)
Query: 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139
R + EK + V ++DA P + +E +L+N+ P ++L NK D D
Sbjct: 5 ARREVTEKL-KLIDIVYELVDARIPMSSRNP--MIEDILKNK-----PRIMLLNKADKAD 56
Query: 140 AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTEMLRARAGA 199
A + + + + + G + + + RA
Sbjct: 57 AAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRAL 116
Query: 200 STG 202
G
Sbjct: 117 IIG 119
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 4e-05
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 16/177 (9%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+++G GKT LL + E +P + ++ L WD
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS---ANVMVDGKPVNLGLWDTA 61
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ + Y + + P+ FE+ + + P++++ K D
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLD 120
Query: 137 LPDAVSADELARY-----------LDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
L D E + L + K V E S G+K + +
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE-CSALTQRGLKTVFDEAIR 176
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 4e-05
Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 20/178 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW---D 74
+++G GKT LL P+ VPTV + K D
Sbjct: 10 LKCVVVGDGAVGKTCLLMSY------ANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYD 63
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
GQ + Y + P+ F++ K L+ P L++ +
Sbjct: 64 TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQ 122
Query: 135 QDLPDAVSADELARYL--------DLKKLDERV--CMFEAVSGYDGFGIKESVEWLVE 182
DL D + +KL + + C + S G+K + +
Sbjct: 123 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 180
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 5e-05
Identities = 31/179 (17%), Positives = 55/179 (30%), Gaps = 22/179 (12%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN---SKLVFWDLG 76
++I+G GKT LL + P+ VPTV N + +L WD
Sbjct: 5 LVIVGDGACGKTCLLIVN------SKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTA 58
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
G + Y + ++ P E+ +++ P++++ NK+D
Sbjct: 59 GLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 117
Query: 137 LPDAVSADELARY-----------LDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184
L + D+ E S G++E E
Sbjct: 118 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME-CSAKTKDGVREVFEMATRAA 175
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 2e-04
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 12/173 (6%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW--- 73
+ ILG GK++L + VEG D PT+ ++ N +
Sbjct: 4 SRKIAILGYRSVGKSSLTIQF------VEGQFVDSYDPTIENTFTKLITVNGQEYHLQLV 57
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ + Y + + + V FE K K+L P++++ N
Sbjct: 58 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 117
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186
K+DL + + F S + + ++ E+
Sbjct: 118 KKDLHMERVISYEEGKALAESWN---AAFLESSAKENQTAVDVFRRIILEAEK 167
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 2e-04
Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 8/173 (4%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
+ VL+LG GK+ L + VE P ++ + L+ +D+
Sbjct: 2 YKVLLLGAPGVGKSALARI----FGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWE 57
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q G R + A V V FE + ++ R P++++ NK DL
Sbjct: 58 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 117
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMERSKR 189
+ D C F S ++ E +V ++ R
Sbjct: 118 VRSREVSVDEGRACAVVFD---CKFIETSAALHHNVQALFEGVVRQIRLRRDS 167
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 37.6 bits (86), Expect = 3e-04
Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 19 HVLILGIDKAGKTTLLEKL----KSVYSNVEGLPPDRIVPTV---GLNIGRIEVSNSKLV 71
++I+G GK+TLL +L +++ +++ G D I + G+ ++ + +
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
DL + G+ ++ E+A V+FV+DA+ P ED K E ++ L++
Sbjct: 62 TNDLVERLGIERTLQE-IEKADIVLFVLDASSPLDEEDRK-------ILERIKNKRYLVV 113
Query: 132 ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
NK D+ + ++ +E+ L + +S G G+++ E +
Sbjct: 114 INKVDVVEKINEEEIKNKLGTDR------HMVKISALKGEGLEKLEESIYR 158
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (84), Expect = 6e-04
Identities = 25/179 (13%), Positives = 60/179 (33%), Gaps = 10/179 (5%)
Query: 17 EFHVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
E + +LG ++GK++L+ + L Y +E T + + + + +
Sbjct: 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLE--------KTESEQYKKEMLVDGQTHLVLI 56
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
+ G + +A VF ++ + LR E G L ++ +
Sbjct: 57 REEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 116
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV-EVMERSKRTEML 193
+ + D + C + G + + + +V+ K+ ++L
Sbjct: 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQLL 175
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 36.8 bits (84), Expect = 6e-04
Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 11/180 (6%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-- 77
V ++G GK+TLL + S + +VP +G V DL G
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG---MVETDDGRSFVMADLPGLI 60
Query: 78 --QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
+ ++ ++ S E + L L L +
Sbjct: 61 EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY-DDYLTINQELSEYNLRLTERP 119
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFE---AVSGYDGFGIKESVEWLVEVMERSKRTEM 192
+ A D +L+ E++ +S G++E + + +E + +
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPL 179
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.2 bits (82), Expect = 0.001
Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-- 77
++++G + GKT LL + P+ VPTV N +++ + L
Sbjct: 5 IVVVGDSQCGKTALLHVF------AKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 58
Query: 78 -QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
P ++ Y ++ AV+ D + P + + ++ +L++ K D
Sbjct: 59 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSD 117
Query: 137 LPDAVSADELARYLDLKKLDERVCMFE 163
L VS +L + ++
Sbjct: 118 LRTDVSTLV-----ELSNHRQTPVSYD 139
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 204 | |||
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.98 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.97 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.97 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.97 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.97 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.96 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.96 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.96 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.96 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.96 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.96 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.96 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.96 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.96 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.95 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.94 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.92 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.92 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.92 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.92 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.92 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.91 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.9 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.9 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.9 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.9 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.9 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.9 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.89 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.89 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.88 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.88 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.88 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.88 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.88 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.87 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.86 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.86 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.84 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.82 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.82 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.82 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.8 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.8 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.77 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.76 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.74 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.7 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.67 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.62 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.56 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.56 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.55 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.27 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.2 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.2 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.14 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.14 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.72 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.68 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.49 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.38 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.33 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.22 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.17 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.08 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.07 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.0 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.98 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.96 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.68 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.64 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.57 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.48 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.47 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.43 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.4 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.4 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.38 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.34 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.33 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.32 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.27 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.27 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.27 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.27 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.26 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.25 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.24 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.22 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.22 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.21 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.21 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.19 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.16 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.15 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.15 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.14 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.09 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.08 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.08 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.08 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.08 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.06 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.06 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.06 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.04 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.01 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.0 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.98 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.97 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.93 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.93 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.92 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.92 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.9 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.9 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.9 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.9 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.86 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.86 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.85 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.84 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.79 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.77 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.76 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.76 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.76 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.74 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.7 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.7 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.68 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.64 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.64 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.63 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.62 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.59 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.57 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.56 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.54 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.54 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.54 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.5 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.49 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.49 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.45 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.4 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.35 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.33 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.3 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.25 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.25 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.21 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.18 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.17 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.17 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.15 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.08 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.06 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.02 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.98 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.95 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.94 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.9 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.85 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.81 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.77 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.72 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 95.72 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.65 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.5 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.5 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.47 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.47 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.47 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.46 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.44 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.37 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.36 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.33 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.28 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.25 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.25 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.2 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.2 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.18 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.7 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.69 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.61 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.59 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.35 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.34 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.29 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.14 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.12 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.06 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.05 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.92 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.86 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.81 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 93.33 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 93.28 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.28 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 93.2 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.17 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 93.08 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.0 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.96 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 92.75 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.67 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 92.66 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 92.49 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.45 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.35 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.19 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.04 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.83 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 91.82 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 91.25 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 90.69 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.52 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 88.95 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.87 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 88.69 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 87.86 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 87.22 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 86.36 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.25 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 85.85 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 85.73 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.62 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.99 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 84.84 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 83.95 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 83.09 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 83.0 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 80.93 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 80.35 |
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=2.7e-32 Score=178.52 Aligned_cols=173 Identities=38% Similarity=0.665 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCH
Q ss_conf 54899998644077611899982899976799999973014778999996545632014699871827999975899111
Q 028776 2 FSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (204)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (204)
++.+..+ ...+++.+||+++|++|||||||++++.+ +.. ....++.+.....+...+..+.+||++|+..+
T Consensus 3 ~~~~~k~--~~~~~~~~kI~vvG~~~vGKSsLi~~l~~------~~~-~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~ 73 (176)
T d1fzqa_ 3 LSILRKL--KSAPDQEVRILLLGLDNAGKTTLLKQLAS------EDI-SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73 (176)
T ss_dssp CCHHHHC--SSCCSSCEEEEEEESTTSSHHHHHHHHCC------SCC-EEEEEETTEEEEEEEETTEEEEEEECSSCGGG
T ss_pred HHHHHHH--HCCCCCEEEEEEECCCCCCHHHHHHHHHC------CCC-CCCEEEEEEEEEEECCCCEEEEEEECCCCCCC
T ss_conf 7899871--17899877999999999899999999964------877-75202331058985048856767632542100
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEE
Q ss_conf 99999840248989999959998898999999999983599999919999728997786699899978284554642038
Q 028776 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM 161 (204)
Q Consensus 82 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (204)
...+...+..+|++++|+|+++..++.....++..+.......++|+++++||+|+.......++.+.+..........+
T Consensus 74 ~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (176)
T d1fzqa_ 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQ 153 (176)
T ss_dssp HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 14778876415526886204565424444455443344303699859999974054542428999999878777736988
Q ss_pred EEEECCCCCCCHHHHHHHHHHH
Q ss_conf 8741136898968999999999
Q 028776 162 FEAVSGYDGFGIKESVEWLVEV 183 (204)
Q Consensus 162 ~~~~Sa~~~~~i~~l~~~i~~~ 183 (204)
++++||++|+|++++|+||.+.
T Consensus 154 ~~~~SA~tg~gv~e~~~~l~~~ 175 (176)
T d1fzqa_ 154 IQSCSALTGEGVQDGMNWVCKN 175 (176)
T ss_dssp EEECCTTTCTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9998699898999999999961
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=1.9e-32 Score=179.29 Aligned_cols=177 Identities=38% Similarity=0.681 Sum_probs=149.9
Q ss_pred HHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHH
Q ss_conf 899998644-0776118999828999767999999730147789999965456320146998718279999758991119
Q 028776 4 LFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 82 (204)
Q Consensus 4 ~~~~~~~~~-~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 82 (204)
.+..++.+. ..++.+||+++|.+|||||||++++.+... ....+|.+............+.+||+||+..+.
T Consensus 3 ~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (182)
T d1moza_ 3 IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-------VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 75 (182)
T ss_dssp HHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEE-------EEECSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCC-------CCCCCCCCEEEEEEEECCEEEEEEECCCCCCCC
T ss_conf 3899999870789668999999999988999988733877-------764330654799996388999999556420011
Q ss_pred HHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998402489899999599988989999999999835999999199997289977866998999782845546420388
Q 028776 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF 162 (204)
Q Consensus 83 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (204)
..+...+..++++++|+|+++..++.....|+...+......+.|+++++||+|+.......++...+.........+++
T Consensus 76 ~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 155 (182)
T d1moza_ 76 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 155 (182)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 45776513440688886411221102589999998775314776269999962566666789999999999876179889
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 7411368989689999999999841
Q 028776 163 EAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 163 ~~~Sa~~~~~i~~l~~~i~~~~~~~ 187 (204)
++|||++|+||+++|++|.+.+.+.
T Consensus 156 ~e~SA~~g~gv~e~~~~l~~~i~~~ 180 (182)
T d1moza_ 156 VASSAIKGEGITEGLDWLIDVIKEE 180 (182)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9977989979999999999999975
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=1.2e-31 Score=175.37 Aligned_cols=163 Identities=34% Similarity=0.674 Sum_probs=143.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCEE
Q ss_conf 61189998289997679999997301477899999654563201469987182799997589911199999840248989
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 95 (204)
.++||+++|+++||||||++++.+ +.....+.+|.+.....+...+..+.+||+||+..+...+...+..++++
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~------~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 74 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIAS------GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 74 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC------CCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 937999999999898999999971------97887405641024424542268888840100012112222222233101
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 99995999889899999999998359999991999972899778669989997828455464203887411368989689
Q 028776 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 175 (204)
++|+|+++.+++.....++..+.......+.|+++++||.|+.......++.+.++.........+++++||++|+|+++
T Consensus 75 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e 154 (164)
T d1zd9a1 75 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 154 (164)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 10133212211100246666655442146985899985256301256788999999998885799899985857949999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 028776 176 SVEWLVEVM 184 (204)
Q Consensus 176 l~~~i~~~~ 184 (204)
+|++|.+.+
T Consensus 155 ~~~~l~~~~ 163 (164)
T d1zd9a1 155 TLQWLIQHS 163 (164)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHCC
T ss_conf 999999826
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=2.5e-31 Score=173.71 Aligned_cols=164 Identities=38% Similarity=0.694 Sum_probs=141.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCEE
Q ss_conf 61189998289997679999997301477899999654563201469987182799997589911199999840248989
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 95 (204)
+.+||+++|.+|||||||++++.+. ....+.+|.+.....+...+..+.+||+||++.+...+...+..++++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 73 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGE-------DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGL 73 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC-------CCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCC-------CCCCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 9279999999998999999998089-------987302357530430113454303663376055415777641210024
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 99995999889899999999998359999991999972899778669989997828455464203887411368989689
Q 028776 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 175 (204)
++|+|+.+..++.....++...+......+.|+++++||+|+.+.....+....+..........++++|||++|+|+++
T Consensus 74 i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 153 (165)
T d1ksha_ 74 IWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP 153 (165)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 02220123222788887666543210157996699974145201267899999998656433798899997888979899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999984
Q 028776 176 SVEWLVEVMER 186 (204)
Q Consensus 176 l~~~i~~~~~~ 186 (204)
+|++|.+.+..
T Consensus 154 ~~~~l~~~i~~ 164 (165)
T d1ksha_ 154 GIDWLLDDISS 164 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
T ss_conf 99999999875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.98 E-value=3.3e-31 Score=173.08 Aligned_cols=168 Identities=36% Similarity=0.703 Sum_probs=144.1
Q ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 64407761189998289997679999997301477899999654563201469987182799997589911199999840
Q 028776 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 10 ~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
....+++.++|+++|.++||||||++++.. +.. ....+|.+............+.+||+||+......+...+
T Consensus 5 ~~~~~~k~~kIvlvG~~~vGKTSli~rl~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 77 (173)
T d1e0sa_ 5 SKIFGNKEMRILMLGLDAAGKTTILYKLKL------GQS-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYY 77 (173)
T ss_dssp HHHHTTCCEEEEEEEETTSSHHHHHHHTTC------CCC-EEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGT
T ss_pred HHHHCCCEEEEEEECCCCCCHHHHHHHHHC------CCC-CCCCCEEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 454079747999999999878999999844------888-8743213256777503524447862798610146777651
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 24898999995999889899999999998359999991999972899778669989997828455464203887411368
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
..++++++|+|+++.+++.....|+..........+.|+++++||+|+.......++...+.........+.+++|||++
T Consensus 78 ~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~t 157 (173)
T d1e0sa_ 78 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 157 (173)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 26624899984154221789999999875301466651311210135610034899999999999876798899802888
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 989689999999999
Q 028776 170 GFGIKESVEWLVEVM 184 (204)
Q Consensus 170 ~~~i~~l~~~i~~~~ 184 (204)
|+||+|+|++|.+.+
T Consensus 158 g~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 158 GDGLYEGLTWLTSNY 172 (173)
T ss_dssp TBTHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHC
T ss_conf 969999999999855
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.4e-31 Score=174.98 Aligned_cols=166 Identities=18% Similarity=0.266 Sum_probs=130.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE-EEEE--EECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 077611899982899976799999973014778999996545632014-6998--7182799997589911199999840
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIE--VSNSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
.+.+.+||+++|..|||||||+++++.. .....+.++..... ..+. ...+.+.+||++|+..+...+..++
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~------~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~ 75 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQS------YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYM 75 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHS------SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHH
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHC------CCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHH
T ss_conf 9887279999997996989999999739------9971003441110025750398330010121245532234521120
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 24898999995999889899999999998359999991999972899778--6699899978284554642038874113
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
+.+|++++|+|.+++.||..+..|+..+.......+.|+++|+||+|+.+ ....++...+.. ..+.++++|||
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa 150 (173)
T d2fn4a1 76 RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA-----SHHVAYFEASA 150 (173)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECBT
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHCCCCCHHHHHHHHH-----HCCCEEEEEEC
T ss_conf 1200345640114456620223124799987256788659999840602211354024567887-----61988999838
Q ss_pred CCCCCHHHHHHHHHHHHHHCHH
Q ss_conf 6898968999999999984134
Q 028776 168 YDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 168 ~~~~~i~~l~~~i~~~~~~~~~ 189 (204)
++|.||+++|+.+.+.+.+.++
T Consensus 151 k~g~gv~e~f~~l~~~i~k~~~ 172 (173)
T d2fn4a1 151 KLRLNVDEAFEQLVRAVRKYQE 172 (173)
T ss_dssp TTTBSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9995999999999999999746
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.97 E-value=5.4e-31 Score=172.01 Aligned_cols=160 Identities=19% Similarity=0.273 Sum_probs=131.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE---EEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 61189998289997679999997301477899999654563201469---987182799997589911199999840248
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
+-+||+++|.+|||||||+++++. +.....+.+|.+..+.. +......+.+||++|+..+.......++.+
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~------~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~ 76 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 76 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 526999999899588999999972------99986547753431011113454332222334456531234543114233
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 98999995999889899999999998359999991999972899778--6699899978284554642038874113689
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|.+++.||..+..|+..+.......+.|+++|+||+|+.+ ....++...+.. ..+.+++++||++|
T Consensus 77 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g 151 (168)
T d1u8za_ 77 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTR 151 (168)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH-----HCCCEEEEECCCCC
T ss_conf 1668985254113455589999999996188998189995364212233530788999999-----76976999868999
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8968999999999984
Q 028776 171 FGIKESVEWLVEVMER 186 (204)
Q Consensus 171 ~~i~~l~~~i~~~~~~ 186 (204)
.||+++|+++.+.+..
T Consensus 152 ~gv~e~f~~l~~~i~~ 167 (168)
T d1u8za_ 152 ANVDKVFFDLMREIRA 167 (168)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 2999999999999977
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.8e-31 Score=172.78 Aligned_cols=161 Identities=21% Similarity=0.259 Sum_probs=126.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE-E--EEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 118999828999767999999730147789999965456320146-9--9871827999975899111999998402489
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-R--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
.+||+++|..|||||||++++.+.... ...++....+. . +......+.+||++|++.+...+..+++.+|
T Consensus 1 ifKi~lvG~~~vGKTsLi~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d 73 (168)
T d2gjsa1 1 VYKVLLLGAPGVGKSALARIFGGVEDG-------PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGD 73 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHTC----------------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCS
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC-------CCCCEEEEEECCEEECCCCCCCEEEEECCCCCCCCEECCCCHHHHH
T ss_conf 969999898993999999998188567-------7588156653001001233321034201112220000231011111
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 8999995999889899999999998359999991999972899778--66998999782845546420388741136898
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|||++++.||+.+..|+..+........+|+++|+||+|+.+ .+...+...+.. ..+.+++++||++|.
T Consensus 74 ~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~~~ 148 (168)
T d2gjsa1 74 AYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCKFIETSAALHH 148 (168)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTSEEEECBTTTTB
T ss_pred HHCEECCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCHHHHCCHHHHHHHHHHH-----HCCCEEEEEECCCCC
T ss_conf 010001342222211212121100002455531379850365526651106999999998-----659889997279994
Q ss_pred CHHHHHHHHHHHHHHCHH
Q ss_conf 968999999999984134
Q 028776 172 GIKESVEWLVEVMERSKR 189 (204)
Q Consensus 172 ~i~~l~~~i~~~~~~~~~ 189 (204)
||+++|+.+.+.+...+.
T Consensus 149 ~v~~~f~~l~~~i~~~~~ 166 (168)
T d2gjsa1 149 NVQALFEGVVRQIRLRRD 166 (168)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 999999999999988861
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-31 Score=174.49 Aligned_cols=159 Identities=18% Similarity=0.384 Sum_probs=129.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE----ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 1189998289997679999997301477899999654563201469987----182799997589911199999840248
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|.+|||||||++++++ +.....+.+|.+.++..... ....+.+||++|+..+...+..+++++
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~ 76 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 76 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHCCCC
T ss_conf 68999999999088999999984------988854465300110001122223332221112346533000020011332
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 98999995999889899999999998359999991999972899778669989997828455464203887411368989
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
+++++|+|+++++||+.+..|+..+.... .++|+++|+||+|+.......+...... ..+.+++++||++|.|
T Consensus 77 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sak~~~~ 149 (170)
T d1i2ma_ 77 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYN 149 (170)
T ss_dssp CEEEEEEETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSHHHHS-----SCSSEEEEEBTTTTBT
T ss_pred CCHHHCCCCCCCCCCCHHHHHHHHHHHCC--CCCCEEEECCHHHHHHHHHHHHHHHHHH-----HCCCEEEEEECCCCCC
T ss_conf 11000113221101002677788876404--7972353446554555133368889998-----7598799996898979
Q ss_pred HHHHHHHHHHHHHHCH
Q ss_conf 6899999999998413
Q 028776 173 IKESVEWLVEVMERSK 188 (204)
Q Consensus 173 i~~l~~~i~~~~~~~~ 188 (204)
|+++|.+|.+.+...+
T Consensus 150 v~e~f~~l~~~l~~~~ 165 (170)
T d1i2ma_ 150 FEKPFLWLARKLIGDP 165 (170)
T ss_dssp TTHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999999972678
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=6.8e-30 Score=166.46 Aligned_cols=158 Identities=27% Similarity=0.392 Sum_probs=124.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE--EEE--ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 1189998289997679999997301477899999654563201469--987--182799997589911199999840248
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|.+|||||||++++.+. .....+.++.+.+... +.. ....+.+||+||++.+...+...++.+
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~a 78 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADD------SFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGA 78 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS------CCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC------CCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 989999999991989999999739------88865145555310468998624369999998998554588999997438
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 98999995999889899999999998359999991999972899778--6699899978284554642038874113689
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|.++++++.....|+..+.... ....|+++++||+|+.. ....++...+.. ..+.+++++||++|
T Consensus 79 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g 152 (169)
T d3raba_ 79 MGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAKDN 152 (169)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHC-CSCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTT
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHCCC-CCCCEEEEEEEECCCCCCCCCCHHHHHHHHH-----HCCCEEEEECCCCC
T ss_conf 77899997811043431234433210236-7752488997311422233211036677998-----75988999569999
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8968999999999984
Q 028776 171 FGIKESVEWLVEVMER 186 (204)
Q Consensus 171 ~~i~~l~~~i~~~~~~ 186 (204)
.||+++|+++.+.+.+
T Consensus 153 ~gv~e~f~~l~~~i~e 168 (169)
T d3raba_ 153 INVKQTFERLVDVICE 168 (169)
T ss_dssp BSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 5999999999999961
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.3e-30 Score=170.10 Aligned_cols=160 Identities=21% Similarity=0.372 Sum_probs=129.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE---EEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 61189998289997679999997301477899999654563201469---987182799997589911199999840248
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
+.+||+++|..|||||||++++.. +.....+.++.+..+.. .......+.+||++|+..+...+..+++.+
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 75 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNG 75 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH------CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC------CCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 565999999899899999999970------98987558750211103688622688740002467522344543112235
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 98999995999889899999999998359999991999972899778--6699899978284554642038874113689
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|+++++||+.+..|+..+.......+.|+++|+||+|+.. ....++...... ...+.+++++||++|
T Consensus 76 ~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g 151 (167)
T d1c1ya_ 76 QGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSK 151 (167)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHH----HHCCCEEEEECCCCC
T ss_conf 5358852104346667679999999885178897099999843755431465257899999----848977999738999
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 896899999999998
Q 028776 171 FGIKESVEWLVEVME 185 (204)
Q Consensus 171 ~~i~~l~~~i~~~~~ 185 (204)
.||+++|+++.+.+.
T Consensus 152 ~gv~e~F~~l~~~i~ 166 (167)
T d1c1ya_ 152 INVNEIFYDLVRQIN 166 (167)
T ss_dssp BSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHC
T ss_conf 198999999999704
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.3e-30 Score=168.84 Aligned_cols=161 Identities=19% Similarity=0.309 Sum_probs=128.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE---EEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 61189998289997679999997301477899999654563201469---987182799997589911199999840248
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
..+||+++|.+|||||||++++.+ +.....+.++.+..... +......+.+||++|...+.......++.+
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 77 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQ------SYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHH------SCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 632899999999799999999973------99885457664520000010012121112211256532254544334245
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 98999995999889899999999998359999991999972899778--6699899978284554642038874113689
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|.++++||..+..|+..+.........|+++|+||+|+.. ....++...+.. ..+.++++|||++|
T Consensus 78 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~~ 152 (171)
T d2erya1 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLAR-----QLKVTYMEASAKIR 152 (171)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHH-----HTTCEEEECBTTTT
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCHHHHHHHHHH-----HCCCEEEEECCCCC
T ss_conf 1689960454344314678876888763035788779998302066531322788899999-----82987999738999
Q ss_pred CCHHHHHHHHHHHHHHC
Q ss_conf 89689999999999841
Q 028776 171 FGIKESVEWLVEVMERS 187 (204)
Q Consensus 171 ~~i~~l~~~i~~~~~~~ 187 (204)
.||+++|..+.+.+...
T Consensus 153 ~~i~e~f~~l~~~i~k~ 169 (171)
T d2erya1 153 MNVDQAFHELVRVIRKF 169 (171)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 39999999999999986
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.9e-30 Score=169.20 Aligned_cols=162 Identities=20% Similarity=0.265 Sum_probs=129.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE---EEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 761189998289997679999997301477899999654563201469---98718279999758991119999984024
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
.+.+||+++|+.+||||||++++.+. .....+.++.+..+.. .......+.+||++|+..+......+++.
T Consensus 2 ~pt~Ki~lvG~~~vGKTsll~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 75 (169)
T d1x1ra1 2 LPTYKLVVVGDGGVGKSALTIQFFQK------IFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 75 (169)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHS------SCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC------CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98579999998995989999999709------888545763120101111235532201220124642322112445300
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 898999995999889899999999998359999991999972899778--669989997828455464203887411368
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|||+++++||..+..|+..+.........|+++++||+|+.. ..+.++..++.. ..+++++++||++
T Consensus 76 ~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~-----~~~~~~~e~Sak~ 150 (169)
T d1x1ra1 76 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKD 150 (169)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSS
T ss_pred CCEEEEECCCCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHCEEEHHHHHHHHH-----HCCCEEEEECCCC
T ss_conf 33899832101002343220246778763145676389984365466623000316778999-----7598799990798
Q ss_pred CC-CHHHHHHHHHHHHHHC
Q ss_conf 98-9689999999999841
Q 028776 170 GF-GIKESVEWLVEVMERS 187 (204)
Q Consensus 170 ~~-~i~~l~~~i~~~~~~~ 187 (204)
+. ||+++|+.+.+.+.++
T Consensus 151 ~~~nV~~~F~~l~~~i~~~ 169 (169)
T d1x1ra1 151 PPLNVDKTFHDLVRVIRQQ 169 (169)
T ss_dssp SCBSHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHC
T ss_conf 8839999999999999739
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.2e-30 Score=167.05 Aligned_cols=160 Identities=21% Similarity=0.305 Sum_probs=129.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE---EEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 61189998289997679999997301477899999654563201469---987182799997589911199999840248
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
+.+||+++|+++||||||++++++ +.....+.++.+..+.. .......+.+||++|+..+.......+..+
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 75 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH------CCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCEEECCCEEEECEEEEEEEEECCCCCCCCCCHHHHHHCC
T ss_conf 766999999799899999999980------98898657741001011023101000233341157532233216653102
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC-CCCHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 98999995999889899999999998359999991999972899778-66998999782845546420388741136898
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
+++++|+|.+++.+|+.+..|+..+.......++|+++++||+|+.. ....++..++.. ..+.+++++||++|+
T Consensus 76 ~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~g~ 150 (166)
T d1ctqa_ 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLAR-----SYGIPYIETSAKTRQ 150 (166)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCT
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH-----HHCCEEEEECCCCCC
T ss_conf 333301112433507788899999998637899709999614554544445778899999-----809849998589994
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 968999999999984
Q 028776 172 GIKESVEWLVEVMER 186 (204)
Q Consensus 172 ~i~~l~~~i~~~~~~ 186 (204)
||+++|.++++.+.+
T Consensus 151 gi~e~f~~i~~~i~~ 165 (166)
T d1ctqa_ 151 GVEDAFYTLVREIRQ 165 (166)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 899999999999975
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.1e-30 Score=168.18 Aligned_cols=162 Identities=22% Similarity=0.388 Sum_probs=129.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE--EEE------------ECCEEEEEECCCCCCHH
Q ss_conf 1189998289997679999997301477899999654563201469--987------------18279999758991119
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV------------SNSKLVFWDLGGQPGLR 82 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------~~~~~~~~D~~g~~~~~ 82 (204)
-+||+++|.+|||||||++++.+ +.....+.++.+..+.. +.. ....+.+||++|++.+.
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~ 78 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTD------NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 78 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC------SCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHC------CCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHH
T ss_conf 98999999999198999999961------999986478654036678999901000013466635886255578645668
Q ss_pred HHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEE
Q ss_conf 999984024898999995999889899999999998359999991999972899778--669989997828455464203
Q 028776 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVC 160 (204)
Q Consensus 83 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~ 160 (204)
..+..+++++|++++|+|++++.+++.+..|+..+.........|+++|+||+|+.. ....++...+.. ..+.
T Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~-----~~~~ 153 (186)
T d2f7sa1 79 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGI 153 (186)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTC
T ss_pred HHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCHHHHHCCCCCCEEEEEEEECCCHHHHCCHHHHHHHHHH-----HCCC
T ss_conf 89999972698899999632345411454211201221367784299996312410221004899999999-----8498
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCHH
Q ss_conf 88741136898968999999999984134
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 161 ~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 189 (204)
+++++||++|+||+++|+++.+.+.+..+
T Consensus 154 ~~~e~Sak~~~~i~e~f~~l~~~i~~k~~ 182 (186)
T d2f7sa1 154 PYFETSAATGQNVEKAVETLLDLIMKRME 182 (186)
T ss_dssp CEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999589997989999999999999887
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3e-30 Score=168.25 Aligned_cols=160 Identities=23% Similarity=0.333 Sum_probs=127.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE---EEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 61189998289997679999997301477899999654563201469---987182799997589911199999840248
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
+.+||+++|.+|||||||++++++. .....+.++.+..+.. +......+.+||++|+..+......+++++
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~------~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a 75 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTG------TFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS------CCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHC------CCCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHCC
T ss_conf 5659999998993999999999719------9987668861135533540476157621345777512344427776153
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 98999995999889899999999998359999991999972899778--6699899978284554642038874113689
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
+++++|+|++++.+|..+..|+..+.......+.|+++|+||+|+.+ ....++...... ..+.+++++||++|
T Consensus 76 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~g 150 (167)
T d1kaoa_ 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSK 150 (167)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCH
T ss_pred CCEEEEEEECCHHHHHHHHCHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHH-----HCCCEEEEECCCCC
T ss_conf 5115664213566654000004666553048999889999722503202326999999999-----74985999888999
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8968999999999984
Q 028776 171 FGIKESVEWLVEVMER 186 (204)
Q Consensus 171 ~~i~~l~~~i~~~~~~ 186 (204)
.||+++|+.+++.+..
T Consensus 151 ~~i~e~f~~i~~~i~~ 166 (167)
T d1kaoa_ 151 TMVDELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCC
T ss_conf 5899999999998703
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.1e-30 Score=169.00 Aligned_cols=159 Identities=19% Similarity=0.285 Sum_probs=122.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE---EEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 1189998289997679999997301477899999654563201469---9871827999975899111999998402489
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+.||+++|..|||||||++++.. +.....+.+|.+..... .......+.+||++|++.+...+..+++++|
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 75 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSK------DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD 75 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCHHCCCCHHHCCCCH
T ss_conf 47999999899388999999971------999887288224411221003542024502456764000003022103100
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC--------------CCHHHHHHHHCCCCCCCCE
Q ss_conf 89999959998898999999999983599999919999728997786--------------6998999782845546420
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV 159 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~ 159 (204)
++++|||.++++||+....|+........ .+.|+++++||+|+.+. ...++...+.. ....
T Consensus 76 ~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~----~~~~ 150 (177)
T d1kmqa_ 76 VILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN----RIGA 150 (177)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHH----HTTC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH----HCCC
T ss_conf 44342021025788878887799999738-997568866325664215678998875103355999999999----8199
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 388741136898968999999999984
Q 028776 160 CMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 160 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 186 (204)
.+|++|||++|.||+++|+.+.+++.+
T Consensus 151 ~~~~E~SAkt~~gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 151 FGYMECSAKTKDGVREVFEMATRAALQ 177 (177)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 679993589996999999999999839
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-29 Score=165.40 Aligned_cols=159 Identities=23% Similarity=0.382 Sum_probs=124.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE--EEEEE--ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 11899982899976799999973014778999996545632014--69987--182799997589911199999840248
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|.+|||||||++++... .......++.+.++ ..+.. ....+.+||+||++.+...+..+++++
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~------~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~ 78 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQG------LFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 78 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS------SCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHC------CCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 999999999991989999999729------99876466554237899999999999999998998543588999997432
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 98999995999889899999999998359999991999972899778--6699899978284554642038874113689
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
+++++|+|.+++.++.....|+..+..... ...|+++++||+|+.+ ....++...+.. ..+.++++|||++|
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~-----~~~~~~~~~SAktg 152 (171)
T d2ew1a1 79 NALILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKES 152 (171)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCCC-CCCCEEEEEEECCCCCCCCHHHHHHHHHHH-----HCCCEEEEECCCCC
T ss_conf 668884221432001124566554201334-635689999621422000023567778998-----67978999746999
Q ss_pred CCHHHHHHHHHHHHHHC
Q ss_conf 89689999999999841
Q 028776 171 FGIKESVEWLVEVMERS 187 (204)
Q Consensus 171 ~~i~~l~~~i~~~~~~~ 187 (204)
.||+++|.++++.+...
T Consensus 153 ~gV~e~f~~l~~~l~~~ 169 (171)
T d2ew1a1 153 DNVEKLFLDLACRLISE 169 (171)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 89899999999999970
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.2e-30 Score=168.97 Aligned_cols=160 Identities=21% Similarity=0.326 Sum_probs=127.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE---EEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 61189998289997679999997301477899999654563201469---987182799997589911199999840248
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
+.+||+++|.+|||||||++++++ +.....+.+|.+..+.. .......+.+||++|+..+......++..+
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~------~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a 74 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVK------GTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKG 74 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT------CCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEEECCCCCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCE
T ss_conf 971899999899798999999970------99987637613310112100022000001112356521110124343320
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 98999995999889899999999998359-999991999972899778--669989997828455464203887411368
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
|++++|||++++++|..+..|+..+.... ...+.|+++|+||+|+.+ ....++...+.. ..+.+++++||++
T Consensus 75 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~-----~~~~~~~e~Sak~ 149 (171)
T d2erxa1 75 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-----TWKCAFMETSAKL 149 (171)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECBTTT
T ss_pred EEEEEEEECCCCCCHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH-----HCCCEEEEECCCC
T ss_conf 38999720222110010210234333340467898689996066532234554899999999-----8498699983899
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 98968999999999984
Q 028776 170 GFGIKESVEWLVEVMER 186 (204)
Q Consensus 170 ~~~i~~l~~~i~~~~~~ 186 (204)
|.||+++|+.+.+.+.+
T Consensus 150 ~~~v~e~f~~l~~~~~~ 166 (171)
T d2erxa1 150 NHNVKELFQELLNLEKR 166 (171)
T ss_dssp TBSHHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 93999999999999998
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.2e-30 Score=167.03 Aligned_cols=158 Identities=24% Similarity=0.326 Sum_probs=128.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE----ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 1189998289997679999997301477899999654563201469987----182799997589911199999840248
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|.+|||||||++++.+ +.....+.++.+........ ....+.+||++|+..+...+..+++++
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 76 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCE------NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDS 76 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH------CCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCCCHHEEEECCCCCCCEEEEECCCCCCEECCCCHHHCCCC
T ss_conf 07999999999398999999982------998864454200100001101378531254402688604510350000389
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 98999995999889899999999998359999991999972899778--6699899978284554642038874113689
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|.++++||+.+..|+..+..... ...|+++++||+|+.. .+..++...+.. ..+.+++++||++|
T Consensus 77 ~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~-----~~~~~~~e~Sak~~ 150 (167)
T d1z08a1 77 NGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQN 150 (167)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHG-GGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCCCCC-CCCCEEEECCCCCCCCCCCCCHHHHHHHHH-----HCCCEEEEEECCCC
T ss_conf 666999809955677755433220011112-332124523210201012322589999999-----85983999706999
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8968999999999984
Q 028776 171 FGIKESVEWLVEVMER 186 (204)
Q Consensus 171 ~~i~~l~~~i~~~~~~ 186 (204)
.||+++|.++.+.+.+
T Consensus 151 ~~v~e~F~~l~~~i~~ 166 (167)
T d1z08a1 151 KGIEELFLDLCKRMIE 166 (167)
T ss_dssp BSHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 6989999999999961
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.6e-30 Score=169.64 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=128.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE---EEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 761189998289997679999997301477899999654563201469---98718279999758991119999984024
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
.+.+||+++|..|||||||++++.+ +.....+.+|.+..+.. ++.....+.+||++|...+.......+..
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~ 75 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVE------GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSID 75 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHH------SCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEECCCCEEEECCCEEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf 8633899999899298999999971------9888544754211310388317679876301124642222343212232
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 898999995999889899999999998359999991999972899778--669989997828455464203887411368
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|||.++++||..+..|+..+.......++|+++++||+|+.. .++.++...+.. ..+.+++++||++
T Consensus 76 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~-----~~~~~~~e~Sak~ 150 (167)
T d1xtqa1 76 INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAAFLESSAKE 150 (167)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECCTTC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH-----HCCCEEEEEECCC
T ss_conf 22110010221023345555310122100013454404505333533222115899999999-----8398899983699
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 9896899999999998
Q 028776 170 GFGIKESVEWLVEVME 185 (204)
Q Consensus 170 ~~~i~~l~~~i~~~~~ 185 (204)
|.||+++|+.+++.+.
T Consensus 151 ~~~v~~~f~~li~~~~ 166 (167)
T d1xtqa1 151 NQTAVDVFRRIILEAE 166 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 9799999999999836
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3.1e-30 Score=168.22 Aligned_cols=157 Identities=23% Similarity=0.388 Sum_probs=126.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE--E--ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 118999828999767999999730147789999965456320146998--7--182799997589911199999840248
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--V--SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|.+|||||||++++.. +.....+.+|.+....... . ....+.+||++|+..+.......++.+
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~------~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 75 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGA 75 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------CCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHCCC
T ss_conf 49999999899598999999982------988864354321221101011068403565421378632103245463068
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 98999995999889899999999998359999991999972899778--6699899978284554642038874113689
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
+++++|+|+++++||+.+..|+..+.... .+.|+++|+||+|+.+ ....++...+.+ ..+++++++||++|
T Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g 148 (164)
T d1z2aa1 76 QACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKED 148 (164)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHCCCCCCCCCCCC--CCCEEEEEECCCCCCCCEEEEEHHHHHHHH-----HCCCEEEEECCCCC
T ss_conf 66999994232244430223433222238--983277763257753444564026677998-----75987999606999
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8968999999999984
Q 028776 171 FGIKESVEWLVEVMER 186 (204)
Q Consensus 171 ~~i~~l~~~i~~~~~~ 186 (204)
.||+++|+.+.+.+.+
T Consensus 149 ~~v~e~f~~l~~~~lq 164 (164)
T d1z2aa1 149 LNVSEVFKYLAEKHLQ 164 (164)
T ss_dssp BSSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 6999999999999719
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.7e-30 Score=166.83 Aligned_cols=162 Identities=19% Similarity=0.298 Sum_probs=122.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE-EEE--ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 7761189998289997679999997301477899999654563201469-987--1827999975899111999998402
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
....+||+++|..|||||||+++++. +.....+.+|.+..... +.. ....+.+||++|++.+...+..+++
T Consensus 6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~ 79 (185)
T d2atxa1 6 GALMLKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP 79 (185)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHH------SSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEEEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHCCC
T ss_conf 87189999999999899999999964------999876777134324689850795587520466542000011231344
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC--------------CCHHHHHHHHCCCCCC
Q ss_conf 48989999959998898999999999983599999919999728997786--------------6998999782845546
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLD 156 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~ 156 (204)
.+|++++|||+++++||+....|+........ .+.|+++|+||+|+.+. +..++..++.. .
T Consensus 80 ~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~-~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~----~ 154 (185)
T d2atxa1 80 MTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK----E 154 (185)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH----H
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHH----H
T ss_conf 21112111246357888878899999999607-888706764244332211123443002355203999999999----8
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 420388741136898968999999999984
Q 028776 157 ERVCMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 157 ~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 186 (204)
....+|++|||++|.||+++|+.+.+++..
T Consensus 155 ~~~~~~~E~SAk~~~gv~e~F~~li~~il~ 184 (185)
T d2atxa1 155 IGACCYVECSALTQKGLKTVFDEAIIAILT 184 (185)
T ss_dssp HTCSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 199779994589882989999999998759
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-29 Score=165.39 Aligned_cols=156 Identities=24% Similarity=0.417 Sum_probs=125.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE----ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 189998289997679999997301477899999654563201469987----1827999975899111999998402489
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
|||+++|..|||||||++++.+ +.....+.++.+........ ....+.+||++|++.+...+...+..++
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 74 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSA 74 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEEEECCCEEECCCCCCEEEEECCCCCCCHHCCCHHHHHHCCC
T ss_conf 9899999899098999999984------9998763662231000001105997235654256885110004388861664
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 8999995999889899999999998359999991999972899778--66998999782845546420388741136898
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|.+++.|+..+..|+..+..... .+.|+++|+||+|+.+ ....++...+.. ..+.++++|||++|.
T Consensus 75 ~~ilv~d~~~~~s~~~i~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~SAk~g~ 148 (164)
T d1yzqa1 75 AAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVMFIETSAKAGY 148 (164)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCT
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHH-----HCCCEEEEECCCCCC
T ss_conf 49996065543132666766899998508-996499973103404544566889999999-----749879996289996
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 96899999999998
Q 028776 172 GIKESVEWLVEVME 185 (204)
Q Consensus 172 ~i~~l~~~i~~~~~ 185 (204)
||+++|++|.++++
T Consensus 149 ~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 149 NVKQLFRRVAAALP 162 (164)
T ss_dssp THHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHC
T ss_conf 99999999999617
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.7e-29 Score=163.47 Aligned_cols=160 Identities=24% Similarity=0.340 Sum_probs=126.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE----EEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 11899982899976799999973014778999996545632014699----87182799997589911199999840248
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI----EVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|.+|||||||++++.. +.....+.++.+...... ......+.+||+||++.+...+...+..+
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 78 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIE------KKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA 78 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 99999999999099999999970------988865553310102567997167101588997898333146578886527
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 98999995999889899999999998359999991999972899778--6699899978284554642038874113689
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
+++++|+|.++++++..+..|+..+..... .+.|+++++||+|+.. .....+...+.. ....+++++||++|
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~~ 152 (174)
T d2bmea1 79 AGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSALTG 152 (174)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTC
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCCCCC-CCEEEEEEEECCCCCCHHCHHHHHHHHHHH-----HCCCEEEEEECCCC
T ss_conf 799999955540567777653011112468-731899997034432100001457899998-----57988999407989
Q ss_pred CCHHHHHHHHHHHHHHCH
Q ss_conf 896899999999998413
Q 028776 171 FGIKESVEWLVEVMERSK 188 (204)
Q Consensus 171 ~~i~~l~~~i~~~~~~~~ 188 (204)
.|++++|.++.+.+.+..
T Consensus 153 ~gi~e~f~~l~~~i~~~~ 170 (174)
T d2bmea1 153 ENVEEAFVQCARKILNKI 170 (174)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 699999999999999887
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.5e-29 Score=164.69 Aligned_cols=160 Identities=21% Similarity=0.213 Sum_probs=125.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE---EECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 118999828999767999999730147789999965456320146998---71827999975899111999998402489
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE---VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
.+||+++|+.|||||||+++++. +.....+.+|.+..+.... .....+.+||++|+..+. ....++..++
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~------~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~ 74 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLT------KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGE 74 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCS
T ss_pred CEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCC-CCHHHHCCCC
T ss_conf 67999999899789999999973------9898763773100111211246632178885111222234-4315433641
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 8999995999889899999999998359999991999972899778--66998999782845546420388741136898
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|+++++||..+..|+..........+.|+++|+||+|+.+ .+..++...+.. ..+++++++||++|.
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~-----~~~~~~~e~Saktg~ 149 (168)
T d2atva1 75 GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSACTGE 149 (168)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTTTCT
T ss_pred CCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCHHHHHHHHH-----HHCCEEEEECCCCCC
T ss_conf 000102568865324455400112111134675226651410255532576999999999-----809959997554188
Q ss_pred -CHHHHHHHHHHHHHHCH
Q ss_conf -96899999999998413
Q 028776 172 -GIKESVEWLVEVMERSK 188 (204)
Q Consensus 172 -~i~~l~~~i~~~~~~~~ 188 (204)
||+++|..+.+.+..++
T Consensus 150 gnV~e~F~~l~~~i~~~r 167 (168)
T d2atva1 150 GNITEIFYELCREVRRRR 167 (168)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHC
T ss_conf 199999999999999845
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.7e-29 Score=164.51 Aligned_cols=159 Identities=23% Similarity=0.327 Sum_probs=127.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE----ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 761189998289997679999997301477899999654563201469987----1827999975899111999998402
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
.+.+||+++|.+|||||||++++.. +.....+.++.+........ ....+.+||++|+..+.......+.
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 75 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVE------DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYR 75 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 7453899999899499999999973------9888644653001211221112333210035304774124577799875
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 4898999995999889899999999998359999991999972899778--66998999782845546420388741136
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
.++++++|+|.+++++|..+..|+..+..... ...|+++|+||+|+.+ ....++..++.. ..+.+++++||+
T Consensus 76 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SAk 149 (167)
T d1z0ja1 76 GSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAK 149 (167)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTT
T ss_pred HCCCEEEEEEECHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCHHCCCCCHHHHHHHHHHH-----HCCCEEEEEECC
T ss_conf 30545898630102455567776555440368-862389962311010023204899999999-----849999999359
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 89896899999999998
Q 028776 169 DGFGIKESVEWLVEVME 185 (204)
Q Consensus 169 ~~~~i~~l~~~i~~~~~ 185 (204)
+|.||+++|.+|.+.++
T Consensus 150 ~~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 150 NAININELFIEISRRIP 166 (167)
T ss_dssp TTBSHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHCC
T ss_conf 99798999999997079
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.1e-29 Score=164.00 Aligned_cols=169 Identities=24% Similarity=0.395 Sum_probs=130.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE--E--EEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 1189998289997679999997301477899999654563201469--9--87182799997589911199999840248
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--I--EVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
-+||+++|..|||||||+++++. +.....+.++.+..... + ......+.+||+||++.+..++..+++.+
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a 79 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSD------DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGS 79 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH------CCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 88999999999098999999961------988887288543257899999965789999998998543578999983258
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 98999995999889899999999998359999991999972899778--6699899978284554642038874113689
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
+++++|+|.++++++.....++..+..... .+.|+++++||+|+.+ ....++...... .....++++||++|
T Consensus 80 ~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~SAk~g 153 (194)
T d2bcgy1 80 HGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDS 153 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCCCHHHHHHHHHHH-----CCCCCEEEEECCCC
T ss_conf 789999967623445667664455664046-775399997214531023215888754332-----14764699864757
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 896899999999998413478988663
Q 028776 171 FGIKESVEWLVEVMERSKRTEMLRARA 197 (204)
Q Consensus 171 ~~i~~l~~~i~~~~~~~~~~~~~~~~~ 197 (204)
.||+++|+++.+.+.+...........
T Consensus 154 ~gi~e~f~~l~~~i~~~~~~~~~~~~~ 180 (194)
T d2bcgy1 154 TNVEDAFLTMARQIKESMSQQNLNETT 180 (194)
T ss_dssp TTHHHHHHHHHHHHHHHCCHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 669999999999999875441447444
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.6e-29 Score=162.81 Aligned_cols=156 Identities=22% Similarity=0.357 Sum_probs=122.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE----EEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 118999828999767999999730147789999965456320146----9987182799997589911199999840248
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
.+||+++|.+|+|||||++++.+.. ....+.++...+.. ..+.....+.+||++|++.+.......++.+
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~ 77 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKK------FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 77 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC------CCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC------CCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 8899999999949899999997299------8875654434321257999899999888715677336778888872378
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 98999995999889899999999998359999991999972899778--6699899978284554642038874113689
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (204)
|++++|+|.++.+||..+..|+..+..... ...|+++++||+|+.. ....++...... ..+.+++++||++|
T Consensus 78 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Saktg 151 (166)
T d1z0fa1 78 AGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTG 151 (166)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTC
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHCCCHHHHHHHHHH-----HCCCEEEEEECCCC
T ss_conf 589997406756777778888999986145-652399980365653210227999999999-----85998999868999
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 89689999999999
Q 028776 171 FGIKESVEWLVEVM 184 (204)
Q Consensus 171 ~~i~~l~~~i~~~~ 184 (204)
.||+++|..+.+.+
T Consensus 152 ~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 152 ENVEDAFLEAAKKI 165 (166)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 79999999999986
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.5e-30 Score=166.24 Aligned_cols=163 Identities=20% Similarity=0.283 Sum_probs=126.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE---EEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 61189998289997679999997301477899999654563201469---987182799997589911199999840248
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
+.+||+++|..|||||||++++.. +.....+.+|.+..... .......+.+||++|++.+...+..+++++
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~ 75 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTT------NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEEEECCEEEEECCCEEEEECCCCCCCHHHHHHHHHCCCCC
T ss_conf 756999999999699999999971------99998758831021002575079424650244442032324454223201
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC--------------CCHHHHHHHHCCCCCCCC
Q ss_conf 989999959998898999999999983599999919999728997786--------------699899978284554642
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDER 158 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~ 158 (204)
|++++|||+++++||+.+..|+........ .+.|+++++||+|+.+. ...++...+.. ...
T Consensus 76 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~ 150 (191)
T d2ngra_ 76 DVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR----DLK 150 (191)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HTT
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHH----HCC
T ss_conf 023114114518899999999999875217-997368774054444320046665430124433999999999----729
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHCHH
Q ss_conf 0388741136898968999999999984134
Q 028776 159 VCMFEAVSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 159 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 189 (204)
..+|+++||++|.||+++|+.+...+.+..+
T Consensus 151 ~~~~~e~SAk~~~~V~e~f~~l~~~~~~~~~ 181 (191)
T d2ngra_ 151 AVKYVECSALTQKGLKNVFDEAILAALEPPE 181 (191)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHTSCCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 9869998388896999999999999861867
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.6e-29 Score=164.64 Aligned_cols=161 Identities=22% Similarity=0.363 Sum_probs=128.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE--EE--ECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 77611899982899976799999973014778999996545632014699--87--182799997589911199999840
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EV--SNSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
+..++||+++|.+|||||||++++.. +.....+.++.+...... .. ....+.+||++|++.+...+...+
T Consensus 3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 76 (170)
T d1r2qa_ 3 KICQFKLVLLGESAVGKSSLVLRFVK------GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHH
T ss_pred CEEEEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 32588999999999498999999985------988854344202200000000021478777415787311005479986
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 24898999995999889899999999998359999991999972899778--6699899978284554642038874113
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
++++++++|+|.++.++|..+..|+..+..... .+.|+++|+||+|+.. ..+.++...+.. ....+++++||
T Consensus 77 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~-----~~~~~~~e~SA 150 (170)
T d1r2qa_ 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSA 150 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCT
T ss_pred HCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCHHHHHHHHH-----HCCCEEEEEEC
T ss_conf 086658997325046677878887643320368-984598632412432234561777777898-----66978999648
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q ss_conf 6898968999999999984
Q 028776 168 YDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 168 ~~~~~i~~l~~~i~~~~~~ 186 (204)
++|.||+++|+.|.+.+.+
T Consensus 151 k~g~~V~e~f~~l~~~i~~ 169 (170)
T d1r2qa_ 151 KTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTCTTHHHHHHHHHHTSCC
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 9997899999999997754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.1e-29 Score=163.15 Aligned_cols=160 Identities=24% Similarity=0.363 Sum_probs=124.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE----EEEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 18999828999767999999730147789999965456320146----99871827999975899111999998402489
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|++|||||||++++.+. .....+.++...... ........+.+||++|+..+...+...+..+|
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d 77 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDK------RFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 77 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS------CCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC------CCCCCCCCCEEECCCEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 89999999993999999999629------999875664110110133213016887876414686322467788740467
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 8999995999889899999999998359999991999972899778--66998999782845546420388741136898
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
++++|+|.+++++|+.+..|+..+..... .++|+++|+||+|+.. ....++...+.. ..+.+++++||++|.
T Consensus 78 ~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~a~-----~~~~~~~e~Sa~tg~ 151 (173)
T d2a5ja1 78 GALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTAC 151 (173)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCT
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHH-----HCCCEEEEECCCCCC
T ss_conf 89999752584887767888999998579-998599995277525544458998887898-----759879994489997
Q ss_pred CHHHHHHHHHHHHHHCHH
Q ss_conf 968999999999984134
Q 028776 172 GIKESVEWLVEVMERSKR 189 (204)
Q Consensus 172 ~i~~l~~~i~~~~~~~~~ 189 (204)
||+++|.++.+.+.+..+
T Consensus 152 ~V~e~f~~i~~~i~~~~~ 169 (173)
T d2a5ja1 152 NVEEAFINTAKEIYRKIQ 169 (173)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999997
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.4e-29 Score=161.57 Aligned_cols=164 Identities=24% Similarity=0.368 Sum_probs=130.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE--EEEE--ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 76118999828999767999999730147789999965456320146--9987--1827999975899111999998402
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
.+.+||+++|..|+|||||++++.+. .....+.++.+.... .+.. ....+.+||+||++.+...+...+.
T Consensus 5 ~~~iKi~vvG~~~vGKTsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 78 (177)
T d1x3sa1 5 LTTLKILIIGESGVGKSSLLLRFTDD------TFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR 78 (177)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS------CCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHC------CCCCCCCCCEEECCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 65228999998990889999999719------988750442210003679999512348999989984655889999976
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC-CCCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 4898999995999889899999999998359999991999972899778-669989997828455464203887411368
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
++|++++|+|++++.++.....|+..+.........|+++++||.|... .....+...+.. ..+.+++++||++
T Consensus 79 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~t 153 (177)
T d1x3sa1 79 GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKT 153 (177)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTT
T ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHH-----HCCCEEEEEECCC
T ss_conf 28889999989786122110222101102455443035787402333332334899999999-----7798899984899
Q ss_pred CCCHHHHHHHHHHHHHHCHH
Q ss_conf 98968999999999984134
Q 028776 170 GFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 170 ~~~i~~l~~~i~~~~~~~~~ 189 (204)
|+||+++|+++.+.+.+.+.
T Consensus 154 g~gv~e~f~~l~~~l~~~p~ 173 (177)
T d1x3sa1 154 CDGVQCAFEELVEKIIQTPG 173 (177)
T ss_dssp CTTHHHHHHHHHHHHHTSGG
T ss_pred CCCHHHHHHHHHHHHCCCCC
T ss_conf 97999999999999735954
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.9e-29 Score=161.76 Aligned_cols=162 Identities=22% Similarity=0.301 Sum_probs=122.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE-----EECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 118999828999767999999730147789999965456320146998-----718279999758991119999984024
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-----VSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
-+||+++|++|||||||++++++.. ....+.++.+....... .....+.+||++|++.+...+..+++.
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 75 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDK------YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRG 75 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC------CCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC------CCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 3899999999969899999997098------8876376545310123464057631201221038720124677887521
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCC---CCCCCEEEEEEECCCCCCC---CCHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 898999995999889899999999998359---9999919999728997786---6998999782845546420388741
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLPDA---VSADELARYLDLKKLDERVCMFEAV 165 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (204)
++++++|+|.+++.||+.+..|+..+.... ...++|+++++||+|+.+. ...++...+.. .....+++++
T Consensus 76 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~e~ 151 (175)
T d1ky3a_ 76 ADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLT 151 (175)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEE
T ss_pred CCEEEEEEECCCCCCCCHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCHHHHHHHHHHH----HCCCCEEEEE
T ss_conf 554899850012333211332011566664101356686799812422012212015777889999----8099769999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCH
Q ss_conf 13689896899999999998413
Q 028776 166 SGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 166 Sa~~~~~i~~l~~~i~~~~~~~~ 188 (204)
||++|.||+++|+++.+.+.+++
T Consensus 152 SA~~g~gv~e~f~~l~~~~l~~~ 174 (175)
T d1ky3a_ 152 SAKNAINVDTAFEEIARSALQQN 174 (175)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 18999499999999999998641
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.96 E-value=3.5e-28 Score=157.85 Aligned_cols=175 Identities=34% Similarity=0.673 Sum_probs=144.7
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHH
Q ss_conf 48999986440776118999828999767999999730147789999965456320146998718279999758991119
Q 028776 3 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 82 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 82 (204)
-|+.++|.+ ..++.+||+++|.+|||||||++++.+... ....++.+............+.+||+++.....
T Consensus 2 ~~~~~~~~~-~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 73 (177)
T d1zj6a1 2 ILFTRIWRL-FNHQEHKVIIVGLDNAGKTTILYQFSMNEV-------VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 73 (177)
T ss_dssp HHHHHHHHH-HTTSCEEEEEEESTTSSHHHHHHHHHTTSC-------EEEECCSCSSCEEEEETTEEEEEEECCC----C
T ss_pred HHHHHHHHH-HCCCEEEEEEECCCCCCHHHHHHHHHCCCC-------CCCCCCCCEEEEEEEECCEEEEEECCCCCCCCC
T ss_conf 318999977-289857999999999898999999966888-------730243333579984053699995155310122
Q ss_pred HHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998402489899999599988989999999999835999999199997289977866998999782845546420388
Q 028776 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF 162 (204)
Q Consensus 83 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (204)
..+......++++++++|.++..++.....++............|+++++||+|+.......++..............++
T Consensus 74 ~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 153 (177)
T d1zj6a1 74 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI 153 (177)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEE
T ss_pred CCHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 11113321541566521445642145542001344320355533799999705631217699999999997667469889
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 74113689896899999999998
Q 028776 163 EAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 163 ~~~Sa~~~~~i~~l~~~i~~~~~ 185 (204)
+++||++|+|+++++++|.+.++
T Consensus 154 ~~~Sa~tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 154 QACCALTGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99969889799999999999737
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.9e-29 Score=160.61 Aligned_cols=160 Identities=24% Similarity=0.377 Sum_probs=123.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE--EEEEEE--ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 61189998289997679999997301477899999654563201--469987--18279999758991119999984024
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
.-+||+++|.+|||||||++++.+ +.....+.++.+.. ...+.. ....+.+||++|++.+...+...++.
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~ 76 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG 76 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH------SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTT
T ss_pred EEEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 788999999999098999999982------99887656553210355799999988899842568737788888977540
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC--CCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 8989999959998898999999999983599999919999728997786--69989997828455464203887411368
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
++++++|+|.++++||.....|+..+..... .++|+++|+||+|+.+. ...+....... ....+++++||++
T Consensus 77 ~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~ 150 (175)
T d2f9la1 77 AVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLSFIETSALD 150 (175)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTT
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCC-CCCCEEEEEEEECCCCCCCCHHHHHHHHHC-----CCCCEEEEEECCC
T ss_conf 6758999978886540347889999998458-998399997651540024336999877640-----4686699996499
Q ss_pred CCCHHHHHHHHHHHHHHC
Q ss_conf 989689999999999841
Q 028776 170 GFGIKESVEWLVEVMERS 187 (204)
Q Consensus 170 ~~~i~~l~~~i~~~~~~~ 187 (204)
|+|++++|+++.+.+.+.
T Consensus 151 g~~i~e~f~~l~~~i~~~ 168 (175)
T d2f9la1 151 STNVEEAFKNILTEIYRI 168 (175)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 969999999999999997
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.7e-29 Score=164.44 Aligned_cols=163 Identities=18% Similarity=0.283 Sum_probs=122.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE---EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 7761189998289997679999997301477899999654563201469---9871827999975899111999998402
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
+.+.+||+++|..|||||||+++++. +.....+.+|.+..... .......+.+||++|+..+......+++
T Consensus 2 ~p~~iKivviG~~~vGKTsli~~~~~------~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 75 (183)
T d1mh1a_ 2 SPQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP 75 (183)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHH------SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCT
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEEECEEEEEECCCCCEEEEEECCCCCCCCHHHHHHCCC
T ss_conf 96069999999999799999999974------989854466311000110003686348986035430010010221234
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC--------------HHHHHHHHCCCCCC
Q ss_conf 4898999995999889899999999998359999991999972899778669--------------98999782845546
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--------------ADELARYLDLKKLD 156 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~~~~~~~~~~~~~~ 156 (204)
.+|++++|+|+++++||+.+..|+........ .+.|+++|+||+|+.+... ..+...+.. .
T Consensus 76 ~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~ 150 (183)
T d1mh1a_ 76 QTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK----E 150 (183)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH----H
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH----H
T ss_conf 45514452035347889989999999999738-998689984022221210015665111356303689999999----8
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 4203887411368989689999999999841
Q 028776 157 ERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 157 ~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 187 (204)
....+|++|||++|.||+++|+.+.+.+.+.
T Consensus 151 ~~~~~~~E~SAk~~~~V~e~F~~l~~~il~p 181 (183)
T d1mh1a_ 151 IGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (183)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 1996699928888819999999999997479
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=4.1e-29 Score=162.54 Aligned_cols=161 Identities=22% Similarity=0.362 Sum_probs=126.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE--EEEEE--CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 6118999828999767999999730147789999965456320146--99871--8279999758991119999984024
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
.-+||+++|.++||||||++++++ +.......++.+.+.. .+..+ ...+.+||+||++.+...+...++.
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~ 78 (173)
T d2fu5c1 5 YLFKLLLIGDSGVGKTCVLFRFSE------DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 78 (173)
T ss_dssp EEEEEEEECCCCC----------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred EEEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 899999999999499999999970------98887547645412789999999999999999899856458899985269
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 898999995999889899999999998359999991999972899778--669989997828455464203887411368
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|+|++++.|+..+..|+..+..... .+.|+++++||+|+.. ....++...... ..+.++++|||++
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~ 152 (173)
T d2fu5c1 79 AMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIKFMETSAKA 152 (173)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCEEEECCC--
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCHHHCCCHHHHHHHHHH-----HCCCEEEEEECCC
T ss_conf 9899999989871448999888877653304-785299998214520001307999987787-----5598899995799
Q ss_pred CCCHHHHHHHHHHHHHHCH
Q ss_conf 9896899999999998413
Q 028776 170 GFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 170 ~~~i~~l~~~i~~~~~~~~ 188 (204)
|+||+++|+++.+.+....
T Consensus 153 g~gv~e~f~~l~~~i~~k~ 171 (173)
T d2fu5c1 153 NINVENAFFTLARDIKAKM 171 (173)
T ss_dssp -CCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHC
T ss_conf 9898999999999999864
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.2e-28 Score=155.98 Aligned_cols=162 Identities=20% Similarity=0.343 Sum_probs=126.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE--EEE--ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 761189998289997679999997301477899999654563201469--987--1827999975899111999998402
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
.+-+||+++|.+|||||||++++.. +.....+.++.+..... ... ....+.+||++|...........+.
T Consensus 4 ~~~~KI~vvG~~~vGKSSli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 77 (174)
T d1wmsa_ 4 SSLFKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR 77 (174)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH------SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEEEEEEEEEEEECCCEEEEEEECCCCCCEEHHHHHHHHH
T ss_conf 7347999999999799999999984------9788765663232144455542584015765203686000345566650
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHC---CCCCCCEEEEEEECCCCCC-CCCHHHHHHHHCCCCCCCCEEEEEEEC
Q ss_conf 489899999599988989999999999835---9999991999972899778-669989997828455464203887411
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
.++++++++|.+++.|++.+..|+..+... ......|+++|+||+|+.+ ....++...+... ....+++++|
T Consensus 78 ~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~----~~~~~~~e~S 153 (174)
T d1wmsa_ 78 GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETS 153 (174)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECC
T ss_pred CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHH----CCCCEEEEEC
T ss_conf 661578998640246642246689999998510257772099941324054322769999999997----4997599976
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 36898968999999999984
Q 028776 167 GYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 167 a~~~~~i~~l~~~i~~~~~~ 186 (204)
|++|.||+++|+++.+.+..
T Consensus 154 ak~~~gI~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 154 AKDATNVAAAFEEAVRRVLA 173 (174)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHC
T ss_conf 89994999999999999950
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.6e-28 Score=159.58 Aligned_cols=158 Identities=22% Similarity=0.366 Sum_probs=126.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE--EEEE--ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 6118999828999767999999730147789999965456320146--9987--18279999758991119999984024
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
..+||+++|+.|||||||++++.+ +.....+.++.+.++. .+.. ....+.+||++|++.+.......+..
T Consensus 2 ~~iKi~vvG~~~vGKTsLi~~~~~------~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~ 75 (170)
T d1ek0a_ 2 TSIKLVLLGEAAVGKSSIVLRFVS------NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRN 75 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 479999999999198999999972------99986546530101202322111123223455568716678888888734
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC-----CCCHHHHHHHHCCCCCCCCEEEEEEEC
Q ss_conf 898999995999889899999999998359999991999972899778-----669989997828455464203887411
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-----AVSADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
+|++++|||.+++.||..+..|+........ ...|+++++||+|+.+ ....++..++.. ..+++++++|
T Consensus 76 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~-----~~~~~~~e~S 149 (170)
T d1ek0a_ 76 AQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQEGGERKVAREEGEKLAE-----EKGLLFFETS 149 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-----HHTCEEEECC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH-----HCCCEEEEEC
T ss_conf 6507999807844430345520211013333-332023210023410110013546999999999-----8699899934
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 3689896899999999998
Q 028776 167 GYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 167 a~~~~~i~~l~~~i~~~~~ 185 (204)
|++|.||+++|..|.+.++
T Consensus 150 ak~g~gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 150 AKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp TTTCTTHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHC
T ss_conf 8999589999999999755
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.96 E-value=2.8e-27 Score=153.27 Aligned_cols=160 Identities=36% Similarity=0.692 Sum_probs=134.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCEEEE
Q ss_conf 18999828999767999999730147789999965456320146998718279999758991119999984024898999
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 97 (204)
+||+++|++|||||||++++.+.... ..+ ++..............+.+||++|...........+..++++++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 73 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIV------TTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS------CCC-CCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC------CCC-CCEEEEEEEEEEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 98999999998989999999659888------622-11146799973016999886278840001566664205326899
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 99599988989999999999835999999199997289977866998999782845546420388741136898968999
Q 028776 98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 177 (204)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 177 (204)
++|..++.++.....++..+.........|+++++||.|+.+.....++............+.+++++||++|+||+++|
T Consensus 74 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~ 153 (160)
T d1r8sa_ 74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (160)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH
T ss_conf 98742737777777777888776404575499975102443444289999999999886379889996798897989999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 028776 178 EWLVEVM 184 (204)
Q Consensus 178 ~~i~~~~ 184 (204)
++|.+.+
T Consensus 154 ~~l~~~l 160 (160)
T d1r8sa_ 154 DWLSNQL 160 (160)
T ss_dssp HHHHHHC
T ss_pred HHHHHCC
T ss_conf 9999519
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=2.4e-28 Score=158.64 Aligned_cols=164 Identities=21% Similarity=0.354 Sum_probs=127.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE----ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 189998289997679999997301477899999654563201469987----1827999975899111999998402489
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+||+++|.+|||||||++++++ +.....+.+|.+.+...... ....+.+||++|.......+...+..++
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 76 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD 76 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999198999999971------9898873884341231001330893477776403786411121122246755
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCC---CCCCCEEEEEEECCCCCC-CCCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 8999995999889899999999998359---999991999972899778-669989997828455464203887411368
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
++++|+|.+++.++..+..|+..+.... ...+.|+++|+||+|+.+ .....+...+.. .....++++|||++
T Consensus 77 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~ 152 (184)
T d1vg8a_ 77 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKE 152 (184)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTT
T ss_pred EEEEEECCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH----HHCCCEEEEECCCC
T ss_conf 89983025411332100256789998733233567778999875033312014899999999----86597699974898
Q ss_pred CCCHHHHHHHHHHHHHHCHHHH
Q ss_conf 9896899999999998413478
Q 028776 170 GFGIKESVEWLVEVMERSKRTE 191 (204)
Q Consensus 170 ~~~i~~l~~~i~~~~~~~~~~~ 191 (204)
|.||+++|+++.+.+.+.....
T Consensus 153 ~~gI~e~f~~l~~~i~~~~~~~ 174 (184)
T d1vg8a_ 153 AINVEQAFQTIARNALKQETEV 174 (184)
T ss_dssp TBSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9699999999999998550523
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.1e-28 Score=157.52 Aligned_cols=159 Identities=25% Similarity=0.436 Sum_probs=124.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE--EEE--ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 61189998289997679999997301477899999654563201469--987--18279999758991119999984024
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
..+||+++|+++||||||++++..... ....+.++.+.+... +.. ....+.+|||+|++.+...+...+++
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~ 79 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAF-----LAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 79 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-----CCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCC-----CCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 688999999999299999999971998-----865412023003677788854838999999899836668888986147
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 898999995999889899999999998359999991999972899778--669989997828455464203887411368
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
+|++++|+|.++++++..+..++........ ...|+++++||+|+.. ....++...+.. ..+.+++++||++
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~ 153 (170)
T d2g6ba1 80 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKT 153 (170)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTT
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCC-CCCEEEEEEEEECHHHCCCCCHHHHHHHHH-----HCCCEEEEEECCC
T ss_conf 8655898628755550345555455443158-773599997330303206656999999999-----8498799984898
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 9896899999999998
Q 028776 170 GFGIKESVEWLVEVME 185 (204)
Q Consensus 170 ~~~i~~l~~~i~~~~~ 185 (204)
|.||+++|+++.+.+.
T Consensus 154 g~gi~e~f~~l~~~i~ 169 (170)
T d2g6ba1 154 GLNVDLAFTAIAKELK 169 (170)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCC
T ss_conf 9699999999999738
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.7e-28 Score=158.38 Aligned_cols=163 Identities=20% Similarity=0.269 Sum_probs=120.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE--EEE--EECCEEEEEECCCCCCHHH-HHHHHCC
Q ss_conf 6118999828999767999999730147789999965456320146--998--7182799997589911199-9998402
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRS-IWEKYYE 90 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~-~~~~~~~ 90 (204)
..+||+++|..|+|||||++++.+..... ....++.+.+.. .+. .....+.+||+++...... ....+++
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~ 76 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSM-----DSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ 76 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTT-----CCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCC-----CCCCCCEEEECCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 78799999989929999999997286775-----6656625531000000048851555562144312222122333333
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 4898999995999889899999999998359999991999972899778--66998999782845546420388741136
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
++|++++|||++++.|+..+..|+..+.......++|+++|+||+|+.+ ....++...+.. ..+.+++++||+
T Consensus 77 ~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak 151 (172)
T d2g3ya1 77 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV-----VFDCKFIETSAA 151 (172)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHH-----HCCCEEEEEECC
T ss_conf 442033431122000122123555554300246771299984044533334542778899998-----769859998289
Q ss_pred CCCCHHHHHHHHHHHHHHCH
Q ss_conf 89896899999999998413
Q 028776 169 DGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 169 ~~~~i~~l~~~i~~~~~~~~ 188 (204)
+|.||+++|..+++.+..++
T Consensus 152 ~g~~i~~~f~~l~~~i~~rr 171 (172)
T d2g3ya1 152 VQHNVKELFEGIVRQVRLRR 171 (172)
T ss_dssp TTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHCC
T ss_conf 99699999999999999732
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.3e-27 Score=152.36 Aligned_cols=164 Identities=13% Similarity=0.224 Sum_probs=122.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE-EEE--EECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 776118999828999767999999730147789999965456320146-998--71827999975899111999998402
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
+-+.+||+++|..+||||||++++.+.... .+.++....+. .+. .....+.+||++|+..+. +++
T Consensus 2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~-------~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~ 69 (175)
T d2bmja1 2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQ-------VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSG 69 (175)
T ss_dssp CCCEEEEEEECCTTTTHHHHHHHHHHSCCC-------CCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCCCC-------CCCCCCCEEEEEEEECCCEEEEEEEEECCCCCCCC-----CCC
T ss_conf 988379999998997899999999719787-------76775540477874048568999985045321001-----355
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCC--CCCCCEEEEEEECCCCCC----CCCHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 4898999995999889899999999998359--999991999972899778----6699899978284554642038874
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNE--DLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (204)
.+|++++|||+++++||+.+..|+..+.... .....|+++|+||.|+.. .....+...+.. .....+|++
T Consensus 70 ~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~----~~~~~~~~e 145 (175)
T d2bmja1 70 WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA----DMKRCSYYE 145 (175)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH----TSTTEEEEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHCCHHHHHHHHHHH----HHCCCEEEE
T ss_conf 6653688861012112441578888899986403678617887530474044302105999999999----819974999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 11368989689999999999841347898
Q 028776 165 VSGYDGFGIKESVEWLVEVMERSKRTEML 193 (204)
Q Consensus 165 ~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~ 193 (204)
|||++|.|++++|..+.+.+.....++++
T Consensus 146 ~SAk~~~~v~~~F~~l~~~i~~~~~~~~l 174 (175)
T d2bmja1 146 TCATYGLNVDRVFQEVAQKVVTLRKQQQL 174 (175)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 07899969999999999999986203045
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.4e-28 Score=157.89 Aligned_cols=159 Identities=24% Similarity=0.386 Sum_probs=125.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE--EEEE--CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 1189998289997679999997301477899999654563201469--9871--82799997589911199999840248
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
-+||+++|.+|+|||||+++++. +.....+.++.+.++.. +..+ ...+.+||+||++.+...+...++++
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 75 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGA 75 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH------CCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTE
T ss_pred EEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 79999999999678999999986------889876377423037899999889899999998999555689999997349
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC-CCCHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 98999995999889899999999998359999991999972899778-66998999782845546420388741136898
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
+++++|+|.+++.+++.+..|+........ ...|++++++|.|+.. ....++...... ..+.+++++||++|+
T Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~i~~~~k~d~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 149 (166)
T d1g16a_ 76 MGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDD 149 (166)
T ss_dssp EEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTB
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCEEEEECCHHHHHHHHHHHHHHHHHHH-----HCCCEEEEECCCCCC
T ss_conf 899999989976579999754400010146-76504652110023321115999999998-----669769998799997
Q ss_pred CHHHHHHHHHHHHHHC
Q ss_conf 9689999999999841
Q 028776 172 GIKESVEWLVEVMERS 187 (204)
Q Consensus 172 ~i~~l~~~i~~~~~~~ 187 (204)
||+++|+++.+.+.+.
T Consensus 150 ~v~e~f~~l~~~i~~k 165 (166)
T d1g16a_ 150 NVNEIFFTLAKLIQEK 165 (166)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHC
T ss_conf 9999999999999961
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.8e-28 Score=159.29 Aligned_cols=159 Identities=20% Similarity=0.304 Sum_probs=122.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE-EE--EECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 1189998289997679999997301477899999654563201469-98--71827999975899111999998402489
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
+.||+++|..|||||||++++.. +.....+.++....... .. .....+.+||++|++.+.......++.+|
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 75 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 75 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 66999999999598999999972------999986587201011221025644776213332211112335541000123
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--------------CCCHHHHHHHHCCCCCCCCE
Q ss_conf 8999995999889899999999998359999991999972899778--------------66998999782845546420
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERV 159 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------------~~~~~~~~~~~~~~~~~~~~ 159 (204)
++++|||+++++||+.+..|+........ .+.|+++|+||+|+.. .+..++...+.+ ....
T Consensus 76 ~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~----~~~~ 150 (179)
T d1m7ba_ 76 AVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGA 150 (179)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTC
T ss_pred HHHEEEECCCCCCHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH----HHCC
T ss_conf 44302303467779999887888874048-851699987403443342146777665417561999999999----8399
Q ss_pred EEEEEECCCCCCC-HHHHHHHHHHHHHH
Q ss_conf 3887411368989-68999999999984
Q 028776 160 CMFEAVSGYDGFG-IKESVEWLVEVMER 186 (204)
Q Consensus 160 ~~~~~~Sa~~~~~-i~~l~~~i~~~~~~ 186 (204)
.+|++|||++|.+ ++++|+.+...+..
T Consensus 151 ~~y~E~SAk~~~n~i~~~F~~~~~~~l~ 178 (179)
T d1m7ba_ 151 ATYIECSALQSENSVRDIFHVATLACVN 178 (179)
T ss_dssp SEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 7599970798984999999999999955
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=4.6e-27 Score=152.22 Aligned_cols=155 Identities=25% Similarity=0.390 Sum_probs=119.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE----EEEEECCEEEEEECCCCCCHHH-HHHHHCC
Q ss_conf 6118999828999767999999730147789999965456320146----9987182799997589911199-9998402
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRS-IWEKYYE 90 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~ 90 (204)
+.+||+++|..|||||||++++... .....+.++.+.... ........+.+||++|...... .+..++.
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAG------RFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 74 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS------SCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHC------CCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCHHHCCCCCEEEEC
T ss_conf 9899999999992989999999739------9988647642422001344564022179998505731103212103642
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 4898999995999889899999999998359999991999972899778--66998999782845546420388741136
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
++|++++|+|+++++||+.+..|+..+.......++|+++|+||+|+.+ .+..++...+.+ ..+.+++++||+
T Consensus 75 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SAk 149 (165)
T d1z06a1 75 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFETSAK 149 (165)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEECCSS
T ss_pred CCCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCHHHHHHHHHHH-----HCCCEEEEEECC
T ss_conf 788249999852356666554212787763258997199992135500101216999999999-----879989998034
Q ss_pred C---CCCHHHHHHHHH
Q ss_conf 8---989689999999
Q 028776 169 D---GFGIKESVEWLV 181 (204)
Q Consensus 169 ~---~~~i~~l~~~i~ 181 (204)
+ +.||+++|++++
T Consensus 150 t~~~~~~V~e~F~~lA 165 (165)
T d1z06a1 150 NPNDNDHVEAIFMTLA 165 (165)
T ss_dssp SGGGGSCHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHC
T ss_conf 2973807999999869
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.94 E-value=6e-25 Score=141.57 Aligned_cols=165 Identities=38% Similarity=0.653 Sum_probs=137.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCEE
Q ss_conf 61189998289997679999997301477899999654563201469987182799997589911199999840248989
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 95 (204)
+.+||+++|.+|||||||++++++... ....++.+............+.+|+.++...............+++
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEV-------VTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAV 76 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC-------CCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC-------CCEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 632999999999899999999967987-------6034132135654036866888750454111222001232101332
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 99995999889899999999998359999991999972899778669989997828455464203887411368989689
Q 028776 96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 175 (204)
++++|..+..++.....++............|+++++||.|+.......++..............+++++||++|.||++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e 156 (169)
T d1upta_ 77 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 156 (169)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred HHHHHHHHCCHHHHCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 11344430100010000114666653035541799986055411011789999987788763898899975888979899
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999841
Q 028776 176 SVEWLVEVMERS 187 (204)
Q Consensus 176 l~~~i~~~~~~~ 187 (204)
+|++|.+.+.+.
T Consensus 157 ~~~~l~~~l~~k 168 (169)
T d1upta_ 157 AMEWLVETLKSR 168 (169)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999957
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=5.4e-24 Score=136.77 Aligned_cols=157 Identities=35% Similarity=0.579 Sum_probs=131.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCEEEEE
Q ss_conf 89998289997679999997301477899999654563201469987182799997589911199999840248989999
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 98 (204)
||+++|.+|||||||++++.+... ..+.++.+.........+....+||+++...+..........+++++++
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRL-------ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 74 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-------CCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-------CEEECEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHEEEEEEE
T ss_conf 899999999999999999958998-------7150246276899505875678874032113466676540000464230
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCC-------CCCEEEEEEECCCCCC
Q ss_conf 959998898999999999983599999919999728997786699899978284554-------6420388741136898
Q 028776 99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-------DERVCMFEAVSGYDGF 171 (204)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~ 171 (204)
+|..+..++.....++..........+.|+++++||.|+.......++...+..... ......+++|||++|+
T Consensus 75 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~ 154 (166)
T d2qtvb1 75 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN 154 (166)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 00334021034567877632001037854999841336412378999999863323468886424479789993378898
Q ss_pred CHHHHHHHHHH
Q ss_conf 96899999999
Q 028776 172 GIKESVEWLVE 182 (204)
Q Consensus 172 ~i~~l~~~i~~ 182 (204)
|++|+|+||.+
T Consensus 155 Gv~e~~~~l~~ 165 (166)
T d2qtvb1 155 GYLEAFQWLSQ 165 (166)
T ss_dssp SHHHHHHHHTT
T ss_pred CHHHHHHHHHC
T ss_conf 99999999848
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.92 E-value=3.6e-24 Score=137.65 Aligned_cols=165 Identities=30% Similarity=0.511 Sum_probs=131.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 07761189998289997679999997301477899999654563201469987182799997589911199999840248
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (204)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 92 (204)
..++..||+++|.+|||||||++++++. ... ...++.+.....+...+..+..||++++..............
T Consensus 9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (186)
T d1f6ba_ 9 LYKKTGKLVFLGLDNAGKTTLLHMLKDD------RLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAI 81 (186)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC-------------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCC------CCC-CEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 3477778999999998989999999678------875-224023343258974362112234440045656776540232
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCC------------CCCCEE
Q ss_conf 98999995999889899999999998359999991999972899778669989997828455------------464203
Q 028776 93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK------------LDERVC 160 (204)
Q Consensus 93 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~ 160 (204)
+++++++|..+...+......+..........+.|+++++||.|+.......++........ .+....
T Consensus 82 ~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (186)
T d1f6ba_ 82 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 161 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf 20112453157420377899998751012357874699873247512188999999972044213332346777513787
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 887411368989689999999999
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 161 ~~~~~Sa~~~~~i~~l~~~i~~~~ 184 (204)
++++|||++|+|++|+|+||.+.+
T Consensus 162 ~~~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 162 EVFMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799985888989999999999842
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=2.2e-24 Score=138.73 Aligned_cols=159 Identities=22% Similarity=0.191 Sum_probs=107.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCH--------HHHHHHHC
Q ss_conf 1899982899976799999973014778999996545632014699871827999975899111--------99999840
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL--------RSIWEKYY 89 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~ 89 (204)
-.|+++|.+|+|||||+++|++.... ........+...........+..+.+|||||.... .......+
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~---~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 82 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVA---PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 82 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCS---CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCE---EECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHCCCCCCCCC
T ss_conf 69999999999999999999688850---331557732211211133200135530344311112222000011112222
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 24898999995999889899999999998359999991999972899778669989997828455464203887411368
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
..+|++++|+|++++... ...++...+.... .+.|+++|+||+|+.... ++..+.+... .....++++||++
T Consensus 83 ~~ad~il~v~D~~~~~~~--~~~~i~~~l~~~~-~~~piilv~NK~Dl~~~~--~~~~~~~~~~---~~~~~~~~iSA~~ 154 (178)
T d1wf3a1 83 ADVNAVVWVVDLRHPPTP--EDELVARALKPLV-GKVPILLVGNKLDAAKYP--EEAMKAYHEL---LPEAEPRMLSALD 154 (178)
T ss_dssp SSCSEEEEEEETTSCCCH--HHHHHHHHHGGGT-TTSCEEEEEECGGGCSSH--HHHHHHHHHT---STTSEEEECCTTC
T ss_pred CCCCCEEEEECHHHHHCC--CCCCHHHHEECCC-CCHHHHHHHCCCCCCCCH--HHHHHHHHHH---CCCCCEEEEECCC
T ss_conf 332003565512663013--2112012100123-220222200016000188--9999999862---1468659996678
Q ss_pred CCCHHHHHHHHHHHHHHC
Q ss_conf 989689999999999841
Q 028776 170 GFGIKESVEWLVEVMERS 187 (204)
Q Consensus 170 ~~~i~~l~~~i~~~~~~~ 187 (204)
|.|+++++++|.+.+++.
T Consensus 155 ~~gi~~L~~~i~~~lpe~ 172 (178)
T d1wf3a1 155 ERQVAELKADLLALMPEG 172 (178)
T ss_dssp HHHHHHHHHHHHTTCCBC
T ss_pred CCCHHHHHHHHHHHCCCC
T ss_conf 979999999999848899
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.92 E-value=3.3e-24 Score=137.86 Aligned_cols=168 Identities=16% Similarity=0.225 Sum_probs=116.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC----CCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 77611899982899976799999973014778----99999654563201469987182799997589911199999840
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----GLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
..+.++|+++|++++|||||+|+|++...... ...... ..+.......+...+..+.++|+||+..+.......+
T Consensus 2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l 80 (179)
T d1wb1a4 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKR-GITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAA 80 (179)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHCCCEECCCCCCEEEE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 989879999907787099999999974395620223300121-3302223000013785211012532232100012344
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHH---HHHHHCCCCCCCCEEEEEEEC
Q ss_conf 24898999995999889899999999998359999991999972899778669989---997828455464203887411
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE---LARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~S 166 (204)
..+|++++++|+.++.... ....+.. +.. .++|+++|+||+|+........ ..+.+..........+++++|
T Consensus 81 ~~~d~~ilv~d~~~g~~~~-~~~~~~~-~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iS 155 (179)
T d1wb1a4 81 DIIDLALIVVDAKEGPKTQ-TGEHMLI-LDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS 155 (179)
T ss_dssp TSCCEEEEEEETTTCSCHH-HHHHHHH-HHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred HHCCCCCCCCCCCCCCCHH-HHHHHHH-HHH---CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 3024321212222211023-4544555-552---5976201123234457788888999999999875057887389987
Q ss_pred CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 368989689999999999841
Q 028776 167 GYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 167 a~~~~~i~~l~~~i~~~~~~~ 187 (204)
|++|+|+++|++.|.+.+++.
T Consensus 156 A~~g~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 156 AKTGFGVDELKNLIITTLNNA 176 (179)
T ss_dssp TTTCTTHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHCCCCC
T ss_conf 667829999999999618862
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.92 E-value=5.3e-24 Score=136.81 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=113.8
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCCEEEE--------------------------EE
Q ss_conf 44077611899982899976799999973014778999996545-6320146--------------------------99
Q 028776 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP-TVGLNIG--------------------------RI 63 (204)
Q Consensus 11 ~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~--------------------------~~ 63 (204)
|.+.+++++|+++|+.++|||||+++|++............... ..+.... ..
T Consensus 2 ~~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (205)
T d2qn6a3 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDE 81 (205)
T ss_dssp CCCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSC
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEECCCCEEEEEECC
T ss_conf 89999970899997248869999999970412122889876022103613433565665433202541134234433102
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCH
Q ss_conf 87182799997589911199999840248989999959998898999999999983599999919999728997786699
Q 028776 64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA 143 (204)
Q Consensus 64 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 143 (204)
......+.++|+||+.+|...+...+..+|++++|+|+.++-.-......+...... ...|+|+++||+|+......
T Consensus 82 ~~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~ 158 (205)
T d2qn6a3 82 PKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEA 158 (205)
T ss_dssp CEEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCHHH
T ss_conf 564378898426138888764014250266442000001401332678999999981---98326541456787651478
Q ss_pred HH----HHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 89----99782845546420388741136898968999999999984
Q 028776 144 DE----LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 144 ~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 186 (204)
.. ....+. .......+++++||++|.|+++|++.+.+.+++
T Consensus 159 ~~~~~~~~~~l~--~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 159 LSQYRQIKQFTK--GTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHHHHHT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHC--CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999999999853--116898869997678887849999988852899
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=1.3e-24 Score=139.93 Aligned_cols=165 Identities=19% Similarity=0.362 Sum_probs=126.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCEE
Q ss_conf 61189998289997679999997301477899999654563201469987182799997589911199999840248989
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 95 (204)
+++||+++|..|||||||++++.... . .+.+|+|.....+......+.+||++|+..+...+...+..++++
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~------~--~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 72 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIH------G--SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSI 72 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT------S--SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCC------C--CCCCEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 90599999999998899999996799------9--998166279999840201444203466421134332002343204
Q ss_pred EEEEECCCCCC----------HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC------------------CCHHHHH
Q ss_conf 99995999889----------8999999999983599999919999728997786------------------6998999
Q 028776 96 VFVIDAACPSR----------FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA------------------VSADELA 147 (204)
Q Consensus 96 i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------------~~~~~~~ 147 (204)
++++|.++..+ +.+....+..++......+.|+++++||.|+... .......
T Consensus 73 i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (200)
T d2bcjq2 73 MFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAR 152 (200)
T ss_dssp EEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHH
T ss_pred EEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf 67640352332134431300159999999999711420685179861301156651441477774631038733599999
Q ss_pred HH-----HCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCH
Q ss_conf 78-----284554642038874113689896899999999998413
Q 028776 148 RY-----LDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 148 ~~-----~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 188 (204)
.+ ..........+.+++|||++|+||+++|+.+.+.+.+.+
T Consensus 153 ~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n 198 (200)
T d2bcjq2 153 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 198 (200)
T ss_dssp HHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999974536799617877489817819999999999999974
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.90 E-value=1.6e-23 Score=134.40 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=110.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCCCCEEEE---------------------EEEEECCEEE
Q ss_conf 77611899982899976799999973014778999996-5456320146---------------------9987182799
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-IVPTVGLNIG---------------------RIEVSNSKLV 71 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~---------------------~~~~~~~~~~ 71 (204)
.+++++|+++|+.++|||||+++|++............ .....++... .......++.
T Consensus 2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T d1kk1a3 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 81 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEE
T ss_conf 89957999993458849999999970344666899971765333421222313530210342256655410205750476
Q ss_pred EEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC----HHHHH
Q ss_conf 99758991119999984024898999995999889899999999998359999991999972899778669----98999
Q 028776 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELA 147 (204)
Q Consensus 72 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~ 147 (204)
++|+||+..+.......+..+|++++|+|+.++.......+.+...... ...+++++.||+|+.+... ...+.
T Consensus 82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~ 158 (195)
T d1kk1a3 82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 158 (195)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 5243103556677653322223310000113566653167999999982---3755234541233024688887999999
Q ss_pred HHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 78284554642038874113689896899999999998
Q 028776 148 RYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 185 (204)
+++.. ......+++++||++|+|+++|++.+.+.++
T Consensus 159 ~~~~~--~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 159 EFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHCC--CCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99630--0479886999877889798999999897780
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=1.6e-23 Score=134.41 Aligned_cols=161 Identities=20% Similarity=0.392 Sum_probs=119.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCEE
Q ss_conf 61189998289997679999997301477899999654563201469987182799997589911199999840248989
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 95 (204)
+++||+++|..|||||||++++..... ++.+.....+......+.+||++|+..+...+..++..++++
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~-----------~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~ 69 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE-----------AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAI 69 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS-----------CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC-----------CCCCEEEEEEEEEEEEEEEECCCCCCCCCCCHHHCCCCCCEE
T ss_conf 916999999999888999998840897-----------972479999974331221002466510011111014677536
Q ss_pred EEEEECCCCCCH----------HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC-----------------CCCHHHHHH
Q ss_conf 999959998898----------99999999998359999991999972899778-----------------669989997
Q 028776 96 VFVIDAACPSRF----------EDSKTALEKVLRNEDLQGAPLLILANKQDLPD-----------------AVSADELAR 148 (204)
Q Consensus 96 i~v~d~~~~~s~----------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----------------~~~~~~~~~ 148 (204)
++|+|.++.+++ .+...++..++........|+++++||+|+.. .....+...
T Consensus 70 i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
T d1svsa1 70 IFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAA 149 (195)
T ss_dssp EEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHCCCCCHHHHHH
T ss_conf 66875034211777764367899999999999611202798789981532145541353488787664058643899999
Q ss_pred HH-----CC-CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 82-----84-55464203887411368989689999999999841
Q 028776 149 YL-----DL-KKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 149 ~~-----~~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 187 (204)
.. .. .......+.+++|||++++||+++|+.+.+.+.+.
T Consensus 150 ~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 150 YIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp HHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 999999997315678950558888688783999999999999756
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=3e-23 Score=133.05 Aligned_cols=166 Identities=19% Similarity=0.161 Sum_probs=111.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCH------------
Q ss_conf 77611899982899976799999973014778999996545632014699871827999975899111------------
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL------------ 81 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------------ 81 (204)
....++|+++|++|+|||||+++|++...... ......+.......+...+..+.++|+||....
T Consensus 5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 81 (186)
T d1mkya2 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALV---SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 81 (186)
T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEE---CCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCEE---ECCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf 78888899999999999999999977876224---225654333200122049923465236885101221222210001
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCE
Q ss_conf 9999984024898999995999889899999999998359999991999972899778--66998999782845546420
Q 028776 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERV 159 (204)
Q Consensus 82 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~ 159 (204)
.......++.+|++++|+|++.+.. .....+ ..++.. .+.|+|+++||+|+.. ....+++...+.........
T Consensus 82 ~~~~~~~~~~~dvii~v~d~~~~~~-~~~~~~-~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (186)
T d1mkya2 82 NYRVVDSIEKADVVVIVLDATQGIT-RQDQRM-AGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY 156 (186)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTCCC-HHHHHH-HHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCH-HHHHHH-HHHHHH---CCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 1778989860999999603456502-668899-999997---08860530010001101011025689999988511689
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 3887411368989689999999999841
Q 028776 160 CMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 160 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 187 (204)
.+++++||++|.|+++|++.|.+.+..+
T Consensus 157 ~~i~~vSa~~g~gv~~L~~~i~~~~~~~ 184 (186)
T d1mkya2 157 SPLIFTSADKGWNIDRMIDAMNLAYASY 184 (186)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 8089986789989999999999999708
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=4.3e-23 Score=132.23 Aligned_cols=152 Identities=20% Similarity=0.188 Sum_probs=106.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCH--------HHHHHHHC
Q ss_conf 1899982899976799999973014778999996545632014699871827999975899111--------99999840
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL--------RSIWEKYY 89 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~ 89 (204)
++|+++|.+|||||||+++|++......... ...+.......+...+..+.++|+||.... .......+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 78 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDI---AGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 78 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSS---TTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECC---CCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8999989999989999999968886675124---6642204765320268235413653212246520247899999998
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 24898999995999889899999999998359999991999972899778669989997828455464203887411368
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
..+|++++++|..+..++.....|...+.... .++|+++|+||+|+..... ........+++++||++
T Consensus 79 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~iilv~NK~Dl~~~~~----------~~~~~~~~~~~~iSAk~ 146 (161)
T d2gj8a1 79 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 146 (161)
T ss_dssp HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HHCCCCCEEECCCCCCCHHHHHHHHHHHHHCC--CCCCEEECCCHHHHHHHHH----------HHHHHCCCCEEEEECCC
T ss_conf 74133201102565420345554445554201--4101020465444335588----------79872799679997888
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 989689999999999
Q 028776 170 GFGIKESVEWLVEVM 184 (204)
Q Consensus 170 ~~~i~~l~~~i~~~~ 184 (204)
|.|+++++++|.+.+
T Consensus 147 ~~gi~~L~~~l~~~l 161 (161)
T d2gj8a1 147 GEGVDVLRNHLKQSM 161 (161)
T ss_dssp CTTHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHC
T ss_conf 989999999998139
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=8.2e-24 Score=135.85 Aligned_cols=161 Identities=23% Similarity=0.298 Sum_probs=104.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE-EEECCEEEEEECCCCC-------CHHHHHHHHC
Q ss_conf 1899982899976799999973014778999996545632014699-8718279999758991-------1199999840
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-EVSNSKLVFWDLGGQP-------GLRSIWEKYY 89 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~-------~~~~~~~~~~ 89 (204)
.+|+++|.+|||||||+|+|++.......... .+........ ...+..+.+||+||.. .........+
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~ 77 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPF----TTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI 77 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTT----CSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCEECCCC----CCEEEEECEEEECCCCEEEECCCCEEECCCHHHHHHHHHHHHHH
T ss_conf 88999899999899999999689971534689----71666564155237874898288806527517779999999987
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 24898999995999889899999999998359-99999199997289977866998999782845546420388741136
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
..++++++++|..... +.....+...+.... ...++|+++|+||+|+.......++.+.+. ..+.+++++||+
T Consensus 78 ~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~iSA~ 151 (180)
T d1udxa2 78 ARTRVLLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSAL 151 (180)
T ss_dssp TSSSEEEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTT
T ss_pred HHHHHHHHHCCCCCCC-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCEEEEEECC
T ss_conf 7534566530012465-3210133444311220001021101155665552778999999997-----569838999767
Q ss_pred CCCCHHHHHHHHHHHHHHCH
Q ss_conf 89896899999999998413
Q 028776 169 DGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 169 ~~~~i~~l~~~i~~~~~~~~ 188 (204)
+|.|++++++.|.+.+....
T Consensus 152 tg~gid~L~~~i~~~l~~~~ 171 (180)
T d1udxa2 152 TGAGLPALKEALHALVRSTP 171 (180)
T ss_dssp TCTTHHHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHHHHHCC
T ss_conf 88899999999999876269
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=1.1e-23 Score=135.28 Aligned_cols=164 Identities=18% Similarity=0.352 Sum_probs=125.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCEE
Q ss_conf 61189998289997679999997301477899999654563201469987182799997589911199999840248989
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 95 (204)
+-+||+++|..|||||||++++.- ...+.+|+|.....+......+.+||++|+..+...+...++.++++
T Consensus 1 r~iKivllG~~~vGKTsll~r~~f---------~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~ 71 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMRI---------IHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSI 71 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH---------HHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC---------CCCCCCEEEEEEEEEEEEEEEEEEECCCCEEEECCCCCCCCCCCCEE
T ss_conf 958999998999998999998846---------89888724149999960144566513531144114233201000036
Q ss_pred EEEEECCCCCC----------HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC------------------CCHHHHH
Q ss_conf 99995999889----------8999999999983599999919999728997786------------------6998999
Q 028776 96 VFVIDAACPSR----------FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA------------------VSADELA 147 (204)
Q Consensus 96 i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------------~~~~~~~ 147 (204)
+++++.++..+ +.....++..++......++|+++++||+|+.+. ...+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 151 (200)
T d1zcba2 72 LFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ 151 (200)
T ss_dssp EEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHH
T ss_pred EEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCHHHCCCEEEEEECCCHHHHHHCCCCHHHHHCCCCCCCCCHHHHHH
T ss_conf 79998477010231010011446788999999617654696399982311456650245078774721368962699999
Q ss_pred HHHCC------CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCH
Q ss_conf 78284------554642038874113689896899999999998413
Q 028776 148 RYLDL------KKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 148 ~~~~~------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 188 (204)
++... .......+.++++||+++.||+++|+.+.+.+.+.+
T Consensus 152 ~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~ 198 (200)
T d1zcba2 152 KFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 198 (200)
T ss_dssp HHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999855587888467778254675899999999999999985
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=1.4e-22 Score=129.58 Aligned_cols=158 Identities=19% Similarity=0.186 Sum_probs=105.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCC---------CCHHHHHHHHC
Q ss_conf 899982899976799999973014778999996545632014699871827999975899---------11199999840
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ---------PGLRSIWEKYY 89 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~ 89 (204)
+|+++|.+|||||||+++|++..... .......+.......+......+.++|++|. ..........+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 78 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAI---VEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 78 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCE---ECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 89999999998999999996777530---314476353132221221221111124542132101223322220000235
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 24898999995999889899999999998359999991999972899778669989997828455464203887411368
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
..+|+++++.+.++...... ..++..+.. .++|+++|+||+|+.++...+...+... .....++++||++
T Consensus 79 ~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~----~~~pviiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~i~iSAk~ 148 (171)
T d1mkya1 79 READLVLFVVDGKRGITKED-ESLADFLRK----STVDTILVANKAENLREFEREVKPELYS-----LGFGEPIPVSAEH 148 (171)
T ss_dssp TTCSEEEEEEETTTCCCHHH-HHHHHHHHH----HTCCEEEEEESCCSHHHHHHHTHHHHGG-----GSSCSCEECBTTT
T ss_pred CCCCEEEEEECCCCCCCCCC-CCCCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHH-----CCCCCEEEEECCC
T ss_conf 55718999601121122221-111222222----2211001310233455656678899986-----1899769996678
Q ss_pred CCCHHHHHHHHHHHHHHCHH
Q ss_conf 98968999999999984134
Q 028776 170 GFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 170 ~~~i~~l~~~i~~~~~~~~~ 189 (204)
|.|+++++++|.+.+++...
T Consensus 149 g~gid~L~~~i~~~l~e~~~ 168 (171)
T d1mkya1 149 NINLDTMLETIIKKLEEKGL 168 (171)
T ss_dssp TBSHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHCCCCCC
T ss_conf 98999999999986977788
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.89 E-value=3.7e-23 Score=132.54 Aligned_cols=167 Identities=13% Similarity=0.057 Sum_probs=114.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC------------CCCCCCEEEEEEEEECCEEEEEECCCCCCHH
Q ss_conf 7611899982899976799999973014778999996------------5456320146998718279999758991119
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR------------IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 82 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 82 (204)
+++++|+++|+.++|||||+++|++......+..... -..|+......+......+.++|+||+.+|.
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~ 80 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECEEEEEEECCCCHHHHH
T ss_conf 99718999958898099999999999987376125565410465655078841772369998121568752373167789
Q ss_pred HHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC-CCHH----HHHHHHCCCCCCC
Q ss_conf 9999840248989999959998898999999999983599999919999728997786-6998----9997828455464
Q 028776 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSAD----ELARYLDLKKLDE 157 (204)
Q Consensus 83 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~----~~~~~~~~~~~~~ 157 (204)
..+...+..+|++++|+|+.++.. .+..+.+...... ...|+|+++||+|+... ...+ ++...+.......
T Consensus 81 ~~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 156 (196)
T d1d2ea3 81 KNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (196)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHHHH---CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999998754376799998688876-3489999999985---588489998556566608789999999999999719995
Q ss_pred CEEEEEEECCCCC----------CCHHHHHHHHHHHHH
Q ss_conf 2038874113689----------896899999999998
Q 028776 158 RVCMFEAVSGYDG----------FGIKESVEWLVEVME 185 (204)
Q Consensus 158 ~~~~~~~~Sa~~~----------~~i~~l~~~i~~~~~ 185 (204)
...+++++|+++| .++.+|++.+.+.++
T Consensus 157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 55879998945264656844463788999999985189
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.88 E-value=1e-22 Score=130.29 Aligned_cols=165 Identities=19% Similarity=0.189 Sum_probs=105.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE----------------EEEEEECCEEEEEECCCCC
Q ss_conf 611899982899976799999973014778999996545632014----------------6998718279999758991
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----------------GRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~D~~g~~ 79 (204)
+.+.|+++|++++|||||+++|++......... ......+... ..+.....++.++||||+.
T Consensus 4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~ 81 (227)
T d1g7sa4 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAG--GITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (227)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCHHEECC--CEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEE
T ss_conf 998799996998549999999982366001457--454531531232101223444332100110111342234641100
Q ss_pred CHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCH----------------
Q ss_conf 1199999840248989999959998898999999999983599999919999728997786699----------------
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---------------- 143 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---------------- 143 (204)
.+.......+..+|++++|+|+.++-... ....+..+.. .++|+|+++||+|+......
T Consensus 82 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~ 156 (227)
T d1g7sa4 82 AFTTLRKRGGALADLAILIVDINEGFKPQ-TQEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (227)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred CCCCCCHHCCCCCCEEEEEEECCCCCCCC-HHHHHHHHHC----CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 00011100012464589998612376320-2577777643----797599999893078814554467888754203088
Q ss_pred ------HHHHHHHC---C----------CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf ------89997828---4----------55464203887411368989689999999999841
Q 028776 144 ------DELARYLD---L----------KKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 144 ------~~~~~~~~---~----------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 187 (204)
..+..... . ........+++++||++|.|+++|++.+....++.
T Consensus 157 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~ 219 (227)
T d1g7sa4 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 898999999999999998665666512310015777499934898989999999999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=1.3e-21 Score=124.70 Aligned_cols=149 Identities=23% Similarity=0.272 Sum_probs=106.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCC--------CC-HHHHHHHH
Q ss_conf 1899982899976799999973014778999996545632014699871827999975899--------11-19999984
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PG-LRSIWEKY 88 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~-~~~~~~~~ 88 (204)
++|+++|.+|+|||||+|+|++.......... ..+...........+..+.+||+||. +. ........
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~ 77 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIP---GTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 77 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSS---CCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCC---CCCCCCEEEEEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98999999999999999999589963553035---632111047997589058861666612577007788999999999
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 02489899999599988989999999999835999999199997289977866998999782845546420388741136
Q 028776 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 168 (204)
Q Consensus 89 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (204)
+..+|++++|+|++++........+ . .. ...++++++||.|+......+++...+.. ..+++++||+
T Consensus 78 ~~~ad~ii~v~d~~~~~~~~~~~~~-~-~~-----~~~~~i~~~~k~d~~~~~~~~~~~~~~~~------~~~~~~vSA~ 144 (160)
T d1xzpa2 78 IEKADIVLFVLDASSPLDEEDRKIL-E-RI-----KNKRYLVVINKVDVVEKINEEEIKNKLGT------DRHMVKISAL 144 (160)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHHH-H-HH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTC------STTEEEEEGG
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHH-H-HC-----CCCCCEEEEEECCCCCHHHHHHHHHHHCC------CCCEEEEECC
T ss_conf 9869999999747888625666653-3-12-----24310023430134330346999998479------9967999788
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 89896899999999
Q 028776 169 DGFGIKESVEWLVE 182 (204)
Q Consensus 169 ~~~~i~~l~~~i~~ 182 (204)
+|.|+++|+++|.+
T Consensus 145 ~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 145 KGEGLEKLEESIYR 158 (160)
T ss_dssp GTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
T ss_conf 99899999999976
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=1.4e-22 Score=129.72 Aligned_cols=157 Identities=21% Similarity=0.249 Sum_probs=95.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCC---------------CHHH
Q ss_conf 8999828999767999999730147789999965456320146998718279999758991---------------1199
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP---------------GLRS 83 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------------~~~~ 83 (204)
.|+++|.+|+|||||+|++++...... .....|... ..+....+.++|+||.. ....
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~----~~~g~T~~~----~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~ 73 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRG----KRPGVTRKI----IEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVH 73 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSS----SSTTCTTSC----EEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEE----CCCCEEECC----CCCCCCCCEECCCCCCEECCCCCCCCCCCCCHHHHH
T ss_conf 899999999889999999968985352----789772045----424422311003677500121111122221024566
Q ss_pred HHHHHCCCCCEEEEEEECCCCCCHHH---------HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC--HHHHHHHHCC
Q ss_conf 99984024898999995999889899---------999999998359999991999972899778669--9899978284
Q 028776 84 IWEKYYEEAHAVVFVIDAACPSRFED---------SKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--ADELARYLDL 152 (204)
Q Consensus 84 ~~~~~~~~~d~ii~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~ 152 (204)
......+.+|++++|+|+........ ....+...+.. .++|+++|+||+|+..... ..........
T Consensus 74 ~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~ 150 (184)
T d2cxxa1 74 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV 150 (184)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC
T ss_pred HHHHCCCCCCHHEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHH---CCCCEEEEEEEEEHHHHHHHHHHHHHHHHCC
T ss_conf 6653011133002664223551011134331320778999999998---4998899876432243578899999998456
Q ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 55464203887411368989689999999999841
Q 028776 153 KKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 153 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 187 (204)
........++++||++|.|+++|++.|.+.++++
T Consensus 151 -~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 151 -PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp -CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred -CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf -5112687389997788989999999999875699
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=9e-22 Score=125.58 Aligned_cols=165 Identities=19% Similarity=0.158 Sum_probs=101.1
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCC------------
Q ss_conf 44077611899982899976799999973014778999996545632014699871827999975899------------
Q 028776 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ------------ 78 (204)
Q Consensus 11 ~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~------------ 78 (204)
.++..+-++|+++|.+|+|||||+|+|++..... ........+..... ........+.|+++.
T Consensus 17 ~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~--~~~~~~~~t~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~ 91 (195)
T d1svia_ 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLA--RTSSKPGKTQTLNF---YIINDELHFVDVPGYGFAKVSKSEREA 91 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC---------------CCEEE---EEETTTEEEEECCCBCCCSSCHHHHHH
T ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEE--EEECCCCEEEECCC---CCCCCCCEEEEEEEECCCCCCCCCCCH
T ss_conf 7998899899998999987999999852987468--86034651230121---124543137888751332112221110
Q ss_pred -CCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf -1119999984024898999995999889899999999998359999991999972899778669989997828455464
Q 028776 79 -PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDE 157 (204)
Q Consensus 79 -~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 157 (204)
.............+|++++|+|++++.. .....++.. +.. .++|+++|+||+|+..+....+..+.+.......
T Consensus 92 ~~~~~~~~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~-l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~ 166 (195)
T d1svia_ 92 WGRMIETYITTREELKAVVQIVDLRHAPS-NDDVQMYEF-LKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID 166 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHH-HHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCCC-CCCCCCCCC-CCC---CCCCCEECHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 36677654311211012222120145642-122211000-002---5575110001203258888999999999986416
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 2038874113689896899999999998
Q 028776 158 RVCMFEAVSGYDGFGIKESVEWLVEVME 185 (204)
Q Consensus 158 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 185 (204)
...+++++||++|.|+++++++|.+.+.
T Consensus 167 ~~~~~~~~SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 167 PEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9997899968899899999999999829
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=5.8e-22 Score=126.53 Aligned_cols=151 Identities=19% Similarity=0.123 Sum_probs=102.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC--CCCCC-----------CCCCCCEEEEEEEEECCEEEEEECCCCCCH
Q ss_conf 76118999828999767999999730147789--99996-----------545632014699871827999975899111
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPPDR-----------IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (204)
+++++|+++|+.++|||||+++|+........ ..... -..|+......+.+++.++.++||||+.+|
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 80 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHCCCEEEEEEEEEEEECCEEEEEEECCCCHHH
T ss_conf 99719999947898499999999998523047741135431134557755875798437999708818999828982654
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCE-EEEEEECCCCCCCC-CHH----HHHHHHCCCCC
Q ss_conf 9999984024898999995999889899999999998359999991-99997289977866-998----99978284554
Q 028776 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAV-SAD----ELARYLDLKKL 155 (204)
Q Consensus 82 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~-~~~----~~~~~~~~~~~ 155 (204)
...+...+..+|++++|+|+.++-.. +..+.+...... ++| +++++||+|+.+.. ..+ ++...+.....
T Consensus 81 ~~~~~~~~~~aD~avlVvda~~Gv~~-qt~~~~~~~~~~----gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 155 (204)
T d2c78a3 81 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 155 (204)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHHHC----CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999878999999989999847-899999999985----9993899998536679889999999999999874499
Q ss_pred CCCEEEEEEECCCCC
Q ss_conf 642038874113689
Q 028776 156 DERVCMFEAVSGYDG 170 (204)
Q Consensus 156 ~~~~~~~~~~Sa~~~ 170 (204)
.....+++..|+..+
T Consensus 156 ~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 156 PGDEVPVIRGSALLA 170 (204)
T ss_dssp CTTTSCEEECCHHHH
T ss_pred CCCCCEEEEEECHHH
T ss_conf 965423400232244
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.87 E-value=3.5e-22 Score=127.66 Aligned_cols=164 Identities=19% Similarity=0.401 Sum_probs=124.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCE
Q ss_conf 76118999828999767999999730147789999965456320146998718279999758991119999984024898
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 94 (204)
+..+||+++|..|||||||++++... .+.+|+|+....+...+..+.+||++|+......+...+..+++
T Consensus 4 k~~~KilllG~~~vGKTsll~~~~~~----------~~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ 73 (221)
T d1azta2 4 RATHRLLLLGAGESGKSTIVKQMRIL----------HVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTA 73 (221)
T ss_dssp HHSEEEEEECSTTSSHHHHHHHHHHH----------HCCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSE
T ss_pred HHCCEEEEECCCCCCHHHHHHHHHCC----------CCCCCCCEEEEEEEECCEEEEEEECCCCCEECCCHHHHCCCCCC
T ss_conf 23477999989999889999989509----------82788886789999776999998637651220112342256651
Q ss_pred EEEEEECCCC----------CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC------CC----------------
Q ss_conf 9999959998----------898999999999983599999919999728997786------69----------------
Q 028776 95 VVFVIDAACP----------SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA------VS---------------- 142 (204)
Q Consensus 95 ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~---------------- 142 (204)
+++|+|.++. .+..+....+..++......++|+++++||+|+.++ ..
T Consensus 74 ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~ 153 (221)
T d1azta2 74 IIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPED 153 (221)
T ss_dssp EEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTT
T ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEECHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 37999725410132232105778998999999861754379838998204666565321674217774844356677421
Q ss_pred ----------HHHHHHHHC--------CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCH
Q ss_conf ----------989997828--------4554642038874113689896899999999998413
Q 028776 143 ----------ADELARYLD--------LKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 143 ----------~~~~~~~~~--------~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 188 (204)
.++...++. ........+.++++||.++.+|+.+|+.+.+.|.+.+
T Consensus 154 ~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~ 217 (221)
T d1azta2 154 ATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH 217 (221)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHHHHH
T ss_conf 2356787256999999999999998534788787314566622562999999999999999987
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.86 E-value=7.4e-22 Score=126.02 Aligned_cols=161 Identities=24% Similarity=0.291 Sum_probs=101.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEE-CCEEEEEECCCCC-------CHHHHHHHHC
Q ss_conf 1899982899976799999973014778999996545632014699871-8279999758991-------1199999840
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQP-------GLRSIWEKYY 89 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~-------~~~~~~~~~~ 89 (204)
.+|+++|.+|||||||+|+|++........ ...|.....+..... ...+.+||+||.. .........+
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~----~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~ 77 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADY----HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI 77 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESST----TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCEECC----CCCEEEEEECEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 869998999987999999996899735558----9844756545057318968998147875567607789999999999
Q ss_pred CCCCEEEEEEECCCCCCHHHH--HHHHH--HHHHCCCCCCCEEEEEEECCCCCCCCC-HHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 248989999959998898999--99999--998359999991999972899778669-9899978284554642038874
Q 028776 90 EEAHAVVFVIDAACPSRFEDS--KTALE--KVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEA 164 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~--~~~~~--~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 164 (204)
..++.++++++....+..... ..... .........++|+++++||+|+.+... .+.+...+ ..+.+++.
T Consensus 78 ~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~------~~~~~v~~ 151 (185)
T d1lnza2 78 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL------TDDYPVFP 151 (185)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC------CSCCCBCC
T ss_pred HHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHH------CCCCCEEE
T ss_conf 985545520121034331023332233210100011103786023101243276899999999973------26994899
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCH
Q ss_conf 113689896899999999998413
Q 028776 165 VSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 165 ~Sa~~~~~i~~l~~~i~~~~~~~~ 188 (204)
+||++|.|+++|++.+.+.+.+..
T Consensus 152 iSA~~g~Gi~~L~~~i~~~L~~~p 175 (185)
T d1lnza2 152 ISAVTREGLRELLFEVANQLENTP 175 (185)
T ss_dssp CSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred EECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 978889899999999999612378
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.86 E-value=2.3e-20 Score=118.48 Aligned_cols=158 Identities=14% Similarity=0.127 Sum_probs=105.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC--------------CCCCC---------------CCCCCCEEEEEEE
Q ss_conf 776118999828999767999999730147789--------------99996---------------5456320146998
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------------LPPDR---------------IVPTVGLNIGRIE 64 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~--------------~~~~~---------------~~~~~~~~~~~~~ 64 (204)
.+..++|+++|+.++|||||+++|+........ ..... -..+.......+.
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCCCCCEEEEEEEE
T ss_conf 37755599993789898999999999869835678899998898628654412210014641344315877315578984
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC--C
Q ss_conf 71827999975899111999998402489899999599988989999999999835999999199997289977866--9
Q 028776 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--S 142 (204)
Q Consensus 65 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~ 142 (204)
....++.++|+||+..+...+......+|++++|+|+..+.. .+..+.+. ++... .-..+|++.||+|+.+.. .
T Consensus 86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~-~Qt~e~~~-~~~~~--gv~~iiv~vNK~D~~~~~~~~ 161 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSY-IASLL--GIKHIVVAINKMDLNGFDERV 161 (222)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHH-HHHHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCC-CCHHHHHH-HHHHC--CCCEEEEEEECCCCCCCCCEE
T ss_conf 152379998166325543332146655766898720456766-33389999-99983--998799998700145552000
Q ss_pred H----HHHHHHHCCCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 9----89997828455464203887411368989689
Q 028776 143 A----DELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 143 ~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 175 (204)
. .++..++....++...++++++||.+|.|+.+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 162 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC
T ss_conf 0356777765567520489960899977546746875
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=9.8e-20 Score=115.32 Aligned_cols=157 Identities=30% Similarity=0.380 Sum_probs=106.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE---ECCEEEEEECCCCCCHHH-HHHHHCCCCCE
Q ss_conf 89998289997679999997301477899999654563201469987---182799997589911199-99984024898
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRS-IWEKYYEEAHA 94 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ 94 (204)
+|+++|++|||||||+++|++.... .. .++.+.+...... ....+.+||++|+..+.. .+..++..+++
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~------~~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 74 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYR------DT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 74 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC------CB-CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC------CC-CCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCC
T ss_conf 8999999998989999999809987------64-2870278999999645435444420211234330156665543055
Q ss_pred EEEEEECCCCCCH-HHHHHHHHHHHHC--CCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCC------------------
Q ss_conf 9999959998898-9999999999835--999999199997289977866998999782845------------------
Q 028776 95 VVFVIDAACPSRF-EDSKTALEKVLRN--EDLQGAPLLILANKQDLPDAVSADELARYLDLK------------------ 153 (204)
Q Consensus 95 ii~v~d~~~~~s~-~~~~~~~~~~~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------------ 153 (204)
+++|+|+.+..++ .....++..++.. .....+|+++++||+|+....+.+++...+...
T Consensus 75 ~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~ 154 (207)
T d2fh5b1 75 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 154 (207)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHH
T ss_conf 63477766653459999999999997688751589479999885467888999999999987515531014542120042
Q ss_pred -----C-----------CCCCEEEEEEECCCCCCC------HHHHHHHHHH
Q ss_conf -----5-----------464203887411368989------6899999999
Q 028776 154 -----K-----------LDERVCMFEAVSGYDGFG------IKESVEWLVE 182 (204)
Q Consensus 154 -----~-----------~~~~~~~~~~~Sa~~~~~------i~~l~~~i~~ 182 (204)
. .......++++|++.+.+ ++++-+|+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~ 205 (207)
T d2fh5b1 155 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 205 (207)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 556666045221445775657737999661478765343229999999997
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=2.4e-19 Score=113.34 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=87.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCC------------CC--CCCCCCCCCEEEEEEEEECCEEEEEECCCCCCH
Q ss_conf 6118999828999767999999730147789------------99--996545632014699871827999975899111
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------------LP--PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (204)
+.-||+++|+.++|||||+.+++........ .. ...-..++......+.+++.++.++||||+.+|
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 84 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred HCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHH
T ss_conf 20299999589899899999999964853402336518469856588875188600112343159838999527860226
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
Q ss_conf 99999840248989999959998898999999999983599999919999728997786
Q 028776 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (204)
Q Consensus 82 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 140 (204)
.......+..+|++|+|+|+.++-. .+....|..... .++|.++++||.|....
T Consensus 85 ~~e~~~~l~~~D~avlVvda~~Gv~-~~T~~~w~~a~~----~~lP~i~fINKmDr~~a 138 (276)
T d2bv3a2 85 TIEVERSMRVLDGAIVVFDSSQGVE-PQSETVWRQAEK----YKVPRIAFANKMDKTGA 138 (276)
T ss_dssp STTHHHHHHHCCEEEEEEETTTSSC-HHHHHHHHHHHT----TTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHHEEEECCCCCCCC-HHHHHHHHHHHH----CCCCEEEEEECCCCCCC
T ss_conf 9999999996300577322567744-669999999998----59997999864456543
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.82 E-value=9.6e-19 Score=110.33 Aligned_cols=116 Identities=21% Similarity=0.203 Sum_probs=85.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCC-------CCCCC-------CCCCCCEEEEEEEEECCEEEEEECCCCCCHHH
Q ss_conf 18999828999767999999730147789-------99996-------54563201469987182799997589911199
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG-------LPPDR-------IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 83 (204)
-+|+++|+.++|||||+.+++........ ....+ -..++......+.+++.++.++||||+.+|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCHHCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCHHHHHH
T ss_conf 09999948898099999999997097553066222211356269888738768751022223432106880681554335
Q ss_pred HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 9998402489899999599988989999999999835999999199997289977
Q 028776 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 84 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 138 (204)
.....+..+|++++|+|+.++-. .+....+..... .++|.++++||+|..
T Consensus 83 e~~~al~~~D~avlvvda~~Gv~-~~t~~~~~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 83 EIRGALEAADAALVAVSAEAGVQ-VGTERAWTVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHHHHHCCCCCEEEEEECCCCCC-CHHHHHHHHHHH----CCCCCCCCCCCCCCC
T ss_conf 56543124673389842357742-115788776554----044310133320222
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=1.9e-20 Score=118.94 Aligned_cols=160 Identities=15% Similarity=0.188 Sum_probs=107.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC--------------CCCCC-------------CCCCCCCEEEEEEEE
Q ss_conf 077611899982899976799999973014778--------------99999-------------654563201469987
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPPD-------------RIVPTVGLNIGRIEV 65 (204)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~--------------~~~~~-------------~~~~~~~~~~~~~~~ 65 (204)
+.+++++|+++|+.++|||||+.+|+....... ..... +-..|+......+.+
T Consensus 2 ~~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~ 81 (239)
T d1f60a3 2 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 81 (239)
T ss_dssp CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCEECCCCCEEEECC
T ss_conf 98985479999478998999999999981896688999999999983687642000035302432240012442047624
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCC------CHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 1827999975899111999998402489899999599988------9899999999998359999991999972899778
Q 028776 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS------RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 66 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 139 (204)
...++.++|+||+.+|...+......+|++++|+|+..+. ...+....+...... .-.++|+++||+|+..
T Consensus 82 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~ 158 (239)
T d1f60a3 82 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVK 158 (239)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEEEEECCCCCC
T ss_conf 9989999989896888999999999758899999899885414557317699999999984---9980899998887888
Q ss_pred CCC--H----HHHHHHHCCCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 669--9----89997828455464203887411368989689
Q 028776 140 AVS--A----DELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 140 ~~~--~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 175 (204)
... + .++..++.........+++++.|+..|.|+-+
T Consensus 159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEE
T ss_conf 888999999998999997418998817999988547776552
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.80 E-value=3.1e-19 Score=112.79 Aligned_cols=158 Identities=17% Similarity=0.200 Sum_probs=102.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC---------------------------CCCCCCCCCCCEEEEEEEEEC
Q ss_conf 76118999828999767999999730147789---------------------------999965456320146998718
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG---------------------------LPPDRIVPTVGLNIGRIEVSN 67 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 67 (204)
+++++|+++|+.++|||||+.+|+........ ........+.......++..+
T Consensus 1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 80 (224)
T d1jnya3 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 80 (224)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCC
T ss_conf 99518999944799999999999998598328899999998875176655542014573344147765242179995188
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCC------HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 279999758991119999984024898999995999889------89999999999835999999199997289977866
Q 028776 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR------FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141 (204)
Q Consensus 68 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 141 (204)
..+.++|+||+.+|...+...+..+|++++|+|+.++.. ..+..+.+.. .... ...++|+++||+|+....
T Consensus 81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~-~~~~--~~~~iIv~iNK~D~~~~~ 157 (224)
T d1jnya3 81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIIL-AKTM--GLDQLIVAVNKMDLTEPP 157 (224)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHH-HHHT--TCTTCEEEEECGGGSSST
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCHHHHHHHH-HHHH--CCCCEEEEEECCCCCCCC
T ss_conf 1268751898487899999999750657998741557545422444224999999-9980--998348999803577753
Q ss_pred -C---HHH----HHHHHCCCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf -9---989----997828455464203887411368989689
Q 028776 142 -S---ADE----LARYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 142 -~---~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 175 (204)
. .+. +..+...........+++++||..|.|+.+
T Consensus 158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 117888877999876787618985667099977457888135
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.80 E-value=1.3e-19 Score=114.67 Aligned_cols=166 Identities=20% Similarity=0.233 Sum_probs=105.4
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC--------------CCC-------------CCCCCCCCCEEEEEE
Q ss_conf 44077611899982899976799999973014778--------------999-------------996545632014699
Q 028776 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLP-------------PDRIVPTVGLNIGRI 63 (204)
Q Consensus 11 ~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~--------------~~~-------------~~~~~~~~~~~~~~~ 63 (204)
....+++++|+++|+.++|||||+.+|+....... +.. ...-..++......+
T Consensus 18 ~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~ 97 (245)
T d1r5ba3 18 DMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF 97 (245)
T ss_dssp HHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred HHCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 75599824999995279899999999999849945889999998877427754211344302331124686554442212
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCC---C---HHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
Q ss_conf 871827999975899111999998402489899999599988---9---8999999999983599999919999728997
Q 028776 64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---R---FEDSKTALEKVLRNEDLQGAPLLILANKQDL 137 (204)
Q Consensus 64 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 137 (204)
.+...++.++|+||+..+...+......+|++++|+|+.++. + ..+..+.+. ++... .-.++++++||+|+
T Consensus 98 ~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~-l~~~~--~i~~iiv~iNKmD~ 174 (245)
T d1r5ba3 98 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LARTQ--GINHLVVVINKMDE 174 (245)
T ss_dssp ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHHT--TCSSEEEEEECTTS
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHH-HHHHC--CCCEEEEEEECCCC
T ss_conf 1133103554255554423666521443030046787477766776533202299999-99985--99959999976887
Q ss_pred CCCC----CHHHHHHHHCCC-----CC-CCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 7866----998999782845-----54-642038874113689896899999
Q 028776 138 PDAV----SADELARYLDLK-----KL-DERVCMFEAVSGYDGFGIKESVEW 179 (204)
Q Consensus 138 ~~~~----~~~~~~~~~~~~-----~~-~~~~~~~~~~Sa~~~~~i~~l~~~ 179 (204)
.... ..+++.+.+... .. ....++++++||++|+||.++++.
T Consensus 175 ~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s 226 (245)
T d1r5ba3 175 PSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS 226 (245)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHC
T ss_conf 7531217889999999999999983757656887999466678795121004
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=2.4e-18 Score=108.29 Aligned_cols=120 Identities=21% Similarity=0.291 Sum_probs=82.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHH----HCCCC
Q ss_conf 11899982899976799999973014778999996545632014699871827999975899111999998----40248
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEK----YYEEA 92 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~----~~~~~ 92 (204)
+++|+++|.+|||||||+|+|++.... . ..+.......+...+..+.+||+||+......+.. ....+
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~------~--~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~ 74 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR------P--TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 74 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC------C--BCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC------C--EEEECCEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 889999999998899999999679999------8--27762428999858848999852555321367999998876412
Q ss_pred CEEEEEEECC-CCCCHHHHHHHHHHHH---HCCCCCCCEEEEEEECCCCCCCCCHH
Q ss_conf 9899999599-9889899999999998---35999999199997289977866998
Q 028776 93 HAVVFVIDAA-CPSRFEDSKTALEKVL---RNEDLQGAPLLILANKQDLPDAVSAD 144 (204)
Q Consensus 93 d~ii~v~d~~-~~~s~~~~~~~~~~~~---~~~~~~~~p~ivv~nK~D~~~~~~~~ 144 (204)
+.+++++|+. ...++.....++..+. ......++|+++++||+|+......+
T Consensus 75 ~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~ 130 (209)
T d1nrjb_ 75 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 130 (209)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHH
T ss_conf 45624899734623399999999999999999874369869999800345567689
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=1.3e-17 Score=104.67 Aligned_cols=170 Identities=12% Similarity=0.161 Sum_probs=97.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCH----HH-HHHHH
Q ss_conf 77611899982899976799999973014778999996545632014699871827999975899111----99-99984
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----RS-IWEKY 88 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~-~~~~~ 88 (204)
....++|+++|.+|+|||||+|+|++......+........++.............+.+|||||.... .. .....
T Consensus 53 ~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~ 132 (400)
T d1tq4a_ 53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMK 132 (400)
T ss_dssp HHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 36771799989999978999999958886777567899988704455311068970799837985433344999998743
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC---------CCHHHHHHHH----C--CC
Q ss_conf 0248989999959998898999999999983599999919999728997786---------6998999782----8--45
Q 028776 89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---------VSADELARYL----D--LK 153 (204)
Q Consensus 89 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---------~~~~~~~~~~----~--~~ 153 (204)
...+|.++++.|..-. ......+..+.. .++|+++|.||+|.... ...+...+.+ . ..
T Consensus 133 ~~~~d~~l~~~~~~~~---~~d~~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~ 205 (400)
T d1tq4a_ 133 FYEYDFFIIISATRFK---KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 205 (400)
T ss_dssp GGGCSEEEEEESSCCC---HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHCCEEEEEECCCCCC---HHHHHHHHHHHH----CCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 3226599996588887---889999999997----699879997086321013543220112278899999999999998
Q ss_pred CCCCCEEEEEEECCCC--CCCHHHHHHHHHHHHHHCHHH
Q ss_conf 5464203887411368--989689999999999841347
Q 028776 154 KLDERVCMFEAVSGYD--GFGIKESVEWLVEVMERSKRT 190 (204)
Q Consensus 154 ~~~~~~~~~~~~Sa~~--~~~i~~l~~~i~~~~~~~~~~ 190 (204)
.......+++.+|... ..++.+|.+.+.+.+++..+.
T Consensus 206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~~~ 244 (400)
T d1tq4a_ 206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH 244 (400)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred HCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 748998977973377645158999999999983999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=6.4e-17 Score=101.16 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=95.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHH--HHH-------C
Q ss_conf 8999828999767999999730147789999965456320146998718279999758991119999--984-------0
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW--EKY-------Y 89 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~-------~ 89 (204)
.|+++|.+|||||||+|+|++............ +..............+..+|++|........ ... .
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQT---TRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 83 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSC---CSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCC---EEEEEEEEEECCCCEEEEECCCCCEECCHHHHHHHHHHCCCCCH
T ss_conf 999997999989999999958986343268871---37888755505873147604887301102344444321022102
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 24898999995999889899999999998359999991999972899778669989997828455464203887411368
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 169 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (204)
..++.++++.|..+.. .....+...+.. ...|.++++||.|..... .++..............+++++||++
T Consensus 84 ~~~~~~l~~~d~~~~~--~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~--~~~~~~~~~~~~~~~~~~~~~vSA~~ 155 (179)
T d1egaa1 84 GDVELVIFVVEGTRWT--PDDEMVLNKLRE----GKAPVILAVNKVDNVQEK--ADLLPHLQFLASQMNFLDIVPISAET 155 (179)
T ss_dssp CCEEEEEEEEETTCCC--HHHHHHHHHHHS----SSSCEEEEEESTTTCCCH--HHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHCCEEEEEEECCCCC--HHHHHHHHHHHH----CCCCEEEEEEEEECCCHH--HHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 1144467987457662--267899877541----357515555434412102--45666766666423899789982768
Q ss_pred CCCHHHHHHHHHHHHHHC
Q ss_conf 989689999999999841
Q 028776 170 GFGIKESVEWLVEVMERS 187 (204)
Q Consensus 170 ~~~i~~l~~~i~~~~~~~ 187 (204)
|.|+++|++.|.+.+++.
T Consensus 156 g~gi~~L~~~i~~~lpe~ 173 (179)
T d1egaa1 156 GLNVDTIAAIVRKHLPEA 173 (179)
T ss_dssp TTTHHHHHHHHHTTCCBC
T ss_pred CCCHHHHHHHHHHHCCCC
T ss_conf 989999999999748888
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.8e-16 Score=97.96 Aligned_cols=167 Identities=15% Similarity=0.084 Sum_probs=88.9
Q ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCC------CCCH--
Q ss_conf 64407761189998289997679999997301477899999654563201469987182799997589------9111--
Q 028776 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG------QPGL-- 81 (204)
Q Consensus 10 ~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g------~~~~-- 81 (204)
+..+....++|+++|.+|+|||||+|++++........ ....+..................+.++ ....
T Consensus 9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T d1puia_ 9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKW 85 (188)
T ss_dssp GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEETTEEEEECCCCC------CCHHHH
T ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC---CCCCCEEECCCEECCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 67997669789998899998999999985898547545---666502311101114654203420012211024454444
Q ss_pred HHHHH---HHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCC-CCCCC
Q ss_conf 99999---840248989999959998898999999999983599999919999728997786699899978284-55464
Q 028776 82 RSIWE---KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL-KKLDE 157 (204)
Q Consensus 82 ~~~~~---~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~ 157 (204)
..... ........++.+.+...... .....++..... ...++++++||+|+............+.. .....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~ 160 (188)
T d1puia_ 86 QRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN 160 (188)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHEEEEEEEECCCCCCH-HHHHHHHHHHHH----CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 4555655654200358998401223312-677788887640----33222011133311588889999999999998608
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 203887411368989689999999999
Q 028776 158 RVCMFEAVSGYDGFGIKESVEWLVEVM 184 (204)
Q Consensus 158 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 184 (204)
...+++++||++|.|+++|++.|.+.+
T Consensus 161 ~~~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 161 GDVQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp SCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 998189996799988999999999970
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=4.2e-16 Score=97.03 Aligned_cols=157 Identities=16% Similarity=0.128 Sum_probs=97.1
Q ss_pred HHCCCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCCC----------CCCCCC--CCCCEEEEEEEE------------
Q ss_conf 44077611-89998289997679999997301477899----------999654--563201469987------------
Q 028776 11 YIFTKTEF-HVLILGIDKAGKTTLLEKLKSVYSNVEGL----------PPDRIV--PTVGLNIGRIEV------------ 65 (204)
Q Consensus 11 ~~~~~~~~-~i~iiG~~~~GKStli~~l~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~------------ 65 (204)
.+.....+ +|+++|+.++|||||+.+|+......... ..++.. .++......+.+
T Consensus 10 lm~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~ 89 (341)
T d1n0ua2 10 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQ 89 (341)
T ss_dssp HHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSS
T ss_pred HHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCCCCCCCCHHC
T ss_conf 84373167489999688886999999999977986635563232244645677568369678789994267655420100
Q ss_pred ----ECCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--
Q ss_conf ----18279999758991119999984024898999995999889899999999998359999991999972899778--
Q 028776 66 ----SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-- 139 (204)
Q Consensus 66 ----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-- 139 (204)
....+.++||||+.++.......++.+|++++|+|+.++-... ....+..... .+.|.++++||+|...
T Consensus 90 ~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~q-T~~~~~~a~~----~~~p~i~viNKiDr~~~e 164 (341)
T d1n0ua2 90 KTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQ-TETVLRQALG----ERIKPVVVINKVDRALLE 164 (341)
T ss_dssp CCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHH-HHHHHHHHHH----TTCEEEEEEECHHHHHHT
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHH-HHHHHHHHHH----CCCCEEEEEECCCCCCCC
T ss_conf 23566537999737873889999998875237249998656682046-9999999987----699869998772655542
Q ss_pred -CCCHHHHHHHHC-------------------CCCCCCCEEEEEEECCCCCCC
Q ss_conf -669989997828-------------------455464203887411368989
Q 028776 140 -AVSADELARYLD-------------------LKKLDERVCMFEAVSGYDGFG 172 (204)
Q Consensus 140 -~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~Sa~~~~~ 172 (204)
....+++...+. ..........+.+.|+..|-.
T Consensus 165 l~~~~~~~~~~l~~~i~~vn~~i~~~~~~~~~~~~~~P~~gnV~FaSa~~g~~ 217 (341)
T d1n0ua2 165 LQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWA 217 (341)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEE
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCEE
T ss_conf 77669999999757653024220123553334301274458167523446727
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=1.4e-15 Score=94.39 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=92.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCEE-------------------EEEEEE-------
Q ss_conf 07761189998289997679999997301477899-999654563201-------------------469987-------
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIVPTVGLN-------------------IGRIEV------- 65 (204)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~-------------------~~~~~~------- 65 (204)
...+.++|+|.|++|+|||||+++|.......... ....+.++...+ .+.-+.
T Consensus 50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lg 129 (327)
T d2p67a1 50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLG 129 (327)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 16983289743899998999999999999756983322037776100065155413678874056541015655534444
Q ss_pred ---------------ECCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf ---------------18279999758991119999984024898999995999889899999999998359999991999
Q 028776 66 ---------------SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130 (204)
Q Consensus 66 ---------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iv 130 (204)
.+..+.+++|.|...-.. .....+|.+++|.....++....... .+... +-++
T Consensus 130 g~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~---gi~e~------aDi~ 197 (327)
T d2p67a1 130 GASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLMEV------ADLI 197 (327)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHHHH------CSEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH---HHHHCCCEEEEEECCCCCHHHHHHCH---HHHCC------CCEE
T ss_conf 203320578999886499827875032112102---34403543899736887255554220---14201------5579
Q ss_pred EEECCCCCCCCCHH----HHHHHHCCC--CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCH
Q ss_conf 97289977866998----999782845--54642038874113689896899999999998413
Q 028776 131 LANKQDLPDAVSAD----ELARYLDLK--KLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 131 v~nK~D~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 188 (204)
|+||+|+....... +....+... ....-..+++.|||.+|+|++++++.|.+......
T Consensus 198 VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~ 261 (327)
T d2p67a1 198 VINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALT 261 (327)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 9986225545778999999999863225577777650489984189998999999999999998
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.56 E-value=9.5e-16 Score=95.25 Aligned_cols=163 Identities=18% Similarity=0.114 Sum_probs=91.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC---------CCCCCCCCCCCCCCEE------------EEE---------------
Q ss_conf 8999828999767999999730147---------7899999654563201------------469---------------
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSN---------VEGLPPDRIVPTVGLN------------IGR--------------- 62 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~~---------~~~~~~~~~~~~~~~~------------~~~--------------- 62 (204)
-|+++|+.|||||||+++++..... .++.....+....... ...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKF 81 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988438768999667664457886453099998878776764036775122028677668
Q ss_pred --------EEEECCEEEEEECCCCCCHHHHHHHH-----CCCCCEEEEEEECCCCCCHHHHH-HHHH--HHHHCCCCCCC
Q ss_conf --------98718279999758991119999984-----02489899999599988989999-9999--99835999999
Q 028776 63 --------IEVSNSKLVFWDLGGQPGLRSIWEKY-----YEEAHAVVFVIDAACPSRFEDSK-TALE--KVLRNEDLQGA 126 (204)
Q Consensus 63 --------~~~~~~~~~~~D~~g~~~~~~~~~~~-----~~~~d~ii~v~d~~~~~s~~~~~-~~~~--~~~~~~~~~~~ 126 (204)
.......+.++|+||+.......... ....+.+++++|+.....-.... ..+. ....+ ...
T Consensus 82 ~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~ 158 (244)
T d1yrba1 82 NEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGA 158 (244)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTS
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCC
T ss_conf 99999998412565436543665314788999999998632476589996365566750476699999999987---078
Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHCC----------C---------------CCCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 19999728997786699899978284----------5---------------5464203887411368989689999999
Q 028776 127 PLLILANKQDLPDAVSADELARYLDL----------K---------------KLDERVCMFEAVSGYDGFGIKESVEWLV 181 (204)
Q Consensus 127 p~ivv~nK~D~~~~~~~~~~~~~~~~----------~---------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 181 (204)
|.++++||+|+............... . .......+++++||++|+|+++++..|.
T Consensus 159 ~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~ 238 (244)
T d1yrba1 159 TTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAY 238 (244)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 74266532014357788899998888999999985336789999999987788637998189987999999999999999
Q ss_pred HHH
Q ss_conf 999
Q 028776 182 EVM 184 (204)
Q Consensus 182 ~~~ 184 (204)
+..
T Consensus 239 e~~ 241 (244)
T d1yrba1 239 EHY 241 (244)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 971
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.56 E-value=9.9e-14 Score=85.09 Aligned_cols=123 Identities=8% Similarity=-0.014 Sum_probs=76.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCC-------HHHHHH
Q ss_conf 7761189998289997679999997301477899999654563201469987182799997589911-------199999
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWE 86 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~ 86 (204)
....++|+++|.+|+||||++|++++........ ....|.....+.....+..+.++||||..+ ......
T Consensus 29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~---~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~ 105 (257)
T d1h65a_ 29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISP---FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIK 105 (257)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS---SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECC---CCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 7787489998999986999999985898413358---8976046789889863388999752134677524899999999
Q ss_pred H--HCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCC-CCCEEEEEEECCCCCC
Q ss_conf 8--402489899999599988989999999999835999-9991999972899778
Q 028776 87 K--YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPD 139 (204)
Q Consensus 87 ~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 139 (204)
. .....++++||++.+...--......+..+....+. .-.++++++||+|...
T Consensus 106 ~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 106 SFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp HHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred HHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHCEEEEEECCCCCC
T ss_conf 99856898769999978887789999999999998732656638899998864477
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.55 E-value=1.9e-14 Score=88.68 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=97.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC------------C-----CCCCCCC---CCCEEEEEE---------
Q ss_conf 0776118999828999767999999730147789------------9-----9996545---632014699---------
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------------L-----PPDRIVP---TVGLNIGRI--------- 63 (204)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~------------~-----~~~~~~~---~~~~~~~~~--------- 63 (204)
...+.++|.|.|++|+|||||++++......... . .....+- ..+...+.-
T Consensus 47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~g 126 (323)
T d2qm8a1 47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG 126 (323)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 06981598611799888999999999987636875134434655478775064101337887503440112665345331
Q ss_pred -------------EEECCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf -------------8718279999758991119999984024898999995999889899999999998359999991999
Q 028776 64 -------------EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130 (204)
Q Consensus 64 -------------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iv 130 (204)
...+..+.++.|.|...-..... ..+|..++|.....++.... ....++ ...-++
T Consensus 127 g~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~---~~~D~~v~v~~p~~GD~iQ~---~k~gil------E~aDi~ 194 (323)
T d2qm8a1 127 GVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA---DLTDFFLVLMLPGAGDELQG---IKKGIF------ELADMI 194 (323)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH---TTSSEEEEEECSCC---------CCTTHH------HHCSEE
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHH---CCCCEEEEEEECCCHHHHHH---HHHHHH------HHHHEE
T ss_conf 106778999976414899858986323332146653---36654899861432455656---323476------540204
Q ss_pred EEECCCCCCCCCHH-----HHHHHHCCCC--CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCHH
Q ss_conf 97289977866998-----9997828455--46420388741136898968999999999984134
Q 028776 131 LANKQDLPDAVSAD-----ELARYLDLKK--LDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 131 v~nK~D~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 189 (204)
|+||+|+....... +....+.... ......+++.+|+.+++|+++++++|.+.......
T Consensus 195 vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~ 260 (323)
T d2qm8a1 195 AVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTA 260 (323)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 675424543068999999999998634555445787736999821799879999999999999997
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.27 E-value=6.9e-11 Score=70.79 Aligned_cols=82 Identities=22% Similarity=0.337 Sum_probs=58.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEE-----------------CCEEEEEECCCCC
Q ss_conf 11899982899976799999973014778999996545632014699871-----------------8279999758991
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVFWDLGGQP 79 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~D~~g~~ 79 (204)
.++|+++|.++||||||++++++.......+...++.+..+. +... ...+.++|+||-.
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gv----v~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi 77 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV----VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV 77 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE----EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEE----EECCCHHHHHHHHHCCCCCEEEEEEEEEECCCCC
T ss_conf 834888899999889999999779974136998887784589----9643586898977438884552168999726317
Q ss_pred CH-------HHHHHHHCCCCCEEEEEEECC
Q ss_conf 11-------999998402489899999599
Q 028776 80 GL-------RSIWEKYYEEAHAVVFVIDAA 102 (204)
Q Consensus 80 ~~-------~~~~~~~~~~~d~ii~v~d~~ 102 (204)
.. .+.+...++.+|++++|+|+.
T Consensus 78 ~ga~~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 78 AGASKGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp TTHHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEEEECC
T ss_conf 885357876589999998506258885146
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.20 E-value=1.6e-11 Score=73.97 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=56.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE--------------------EECCEEEEEECCC
Q ss_conf 18999828999767999999730147789999965456320146998--------------------7182799997589
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--------------------VSNSKLVFWDLGG 77 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~D~~g 77 (204)
.+|+++|.++||||||+|+|++.......+...++.+..|......+ .....+.++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CCEEEECCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 91768899999899999999788970326997755586262327787046564003686533234555665079998897
Q ss_pred CCCH-------HHHHHHHCCCCCEEEEEEECCC
Q ss_conf 9111-------9999984024898999995999
Q 028776 78 QPGL-------RSIWEKYYEEAHAVVFVIDAAC 103 (204)
Q Consensus 78 ~~~~-------~~~~~~~~~~~d~ii~v~d~~~ 103 (204)
.... .......++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred CCCCHHCCCCHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 444300010058999974305527899851556
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=1.8e-10 Score=68.69 Aligned_cols=121 Identities=20% Similarity=0.158 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCCCCE------------------------------------
Q ss_conf 611899982899976799999973014778999996-5456320------------------------------------
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR-IVPTVGL------------------------------------ 58 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~------------------------------------ 58 (204)
.-++|+|+|..++|||||+|++++..-...+....+ ....+.+
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEECCHHHHHHHHHHHHHHHH
T ss_conf 88869997689897999999996898688789740357889997235652268986899714788999999999998850
Q ss_pred --------EEE--EEEE-ECCEEEEEECCCCC-------------CHHHHHHHHCCCCCE-EEEEEECCCCCCHHHHHHH
Q ss_conf --------146--9987-18279999758991-------------119999984024898-9999959998898999999
Q 028776 59 --------NIG--RIEV-SNSKLVFWDLGGQP-------------GLRSIWEKYYEEAHA-VVFVIDAACPSRFEDSKTA 113 (204)
Q Consensus 59 --------~~~--~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~ 113 (204)
... ++.. ....+.++|+||.. ........++...+. +++|.++....+-.....+
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~ 184 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred CCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 77767677607999747998872577168743346677631479999999999862756035664034542112599999
Q ss_pred HHHHHHCCCCCCCEEEEEEECCCCCCC
Q ss_conf 999983599999919999728997786
Q 028776 114 LEKVLRNEDLQGAPLLILANKQDLPDA 140 (204)
Q Consensus 114 ~~~~~~~~~~~~~p~ivv~nK~D~~~~ 140 (204)
.+.+- ....++++|+||+|..++
T Consensus 185 ~~~~~----~~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 185 AKEVD----PQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHC----TTCSSEEEEEECGGGSCT
T ss_pred HHHHC----CCCCCEEEEEECCCCCCC
T ss_conf 99738----677813667702665531
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.14 E-value=2.8e-10 Score=67.75 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=67.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCC---------------------------------------
Q ss_conf 118999828999767999999730147789999-9654563---------------------------------------
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTV--------------------------------------- 56 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~-~~~~~~~--------------------------------------- 56 (204)
-++|+|+|..++|||||+|+++|......+... ......+
T Consensus 24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (306)
T d1jwyb_ 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (306)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHH
T ss_conf 88599981898979999999968997887897540688899994577666765306566776268862237899999999
Q ss_pred ---------------CEEEEEEEE-ECCEEEEEECCCCCC-------------HHHHHHHHCCCCCEEEEEE-ECCCCCC
Q ss_conf ---------------201469987-182799997589911-------------1999998402489899999-5999889
Q 028776 57 ---------------GLNIGRIEV-SNSKLVFWDLGGQPG-------------LRSIWEKYYEEAHAVVFVI-DAACPSR 106 (204)
Q Consensus 57 ---------------~~~~~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~-d~~~~~s 106 (204)
......+.. ....+.++|+||... .......++..++.+++++ ++.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~ 183 (306)
T d1jwyb_ 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (306)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 99987427777656650699824789888068658886443668840358999999999998277751687632563100
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
Q ss_conf 8999999999983599999919999728997786
Q 028776 107 FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140 (204)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 140 (204)
-.....+.+.+- ....++++|+||+|....
T Consensus 184 ~~~~~~~~~~~~----~~~~r~i~Vitk~D~~~~ 213 (306)
T d1jwyb_ 184 NSDALQLAKEVD----PEGKRTIGVITKLDLMDK 213 (306)
T ss_dssp TCSHHHHHHHHC----SSCSSEEEEEECTTSSCS
T ss_pred CCHHHHHHHHHC----CCCCEEEEEEECCCCCCC
T ss_conf 349999999738----678858999820444531
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.14 E-value=1.4e-10 Score=69.26 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=62.0
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCEEEEEEEEE-----------------CCEEEE
Q ss_conf 44077611899982899976799999973014-778999996545632014699871-----------------827999
Q 028776 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVF 72 (204)
Q Consensus 11 ~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 72 (204)
|-+....++++++|.++||||||++++++... ....+...++.+..+. +... ...+.+
T Consensus 4 ~~~~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~----v~v~d~r~~~l~~~~~~~~~~~~~i~~ 79 (296)
T d1ni3a1 4 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAK----VAVPDERFDWLCEAYKPKSRVPAFLTV 79 (296)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEE----EEECCHHHHHHHHHHCCSEEECEEEEE
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE----EECCCCCHHHHHHCCCCCCEECCCCEE
T ss_conf 6777887379997899998999999997789877478996670387689----960663400143105677444254314
Q ss_pred EECCCC-------CCHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 975899-------1119999984024898999995999
Q 028776 73 WDLGGQ-------PGLRSIWEKYYEEAHAVVFVIDAAC 103 (204)
Q Consensus 73 ~D~~g~-------~~~~~~~~~~~~~~d~ii~v~d~~~ 103 (204)
.|.||. ....+.+...++.+|++++|+|+.+
T Consensus 80 ~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 80 FDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp ECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred EECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCC
T ss_conf 41354456640135508999998612462699985147
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.72 E-value=1.4e-08 Score=59.15 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=38.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCC
Q ss_conf 077611899982899976799999973014778999996545632014699871827999975899
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (204)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 78 (204)
.....++++++|.+|||||||+|++.+......+..+ ..|.+... + ..+..+.++||||.
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~p---G~Tr~~~~--i-~~~~~~~l~DTPGi 167 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP---GITTSQQW--V-KVGKELELLDTPGI 167 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------CC--E-EETTTEEEEECCCC
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCC---CCCCCCEE--E-ECCCCEEEECCCCC
T ss_conf 7777527899866754435554254266158878953---22455348--9-87997599538974
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.68 E-value=2e-08 Score=58.44 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=71.2
Q ss_pred CHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCE
Q ss_conf 11999998402489899999599988989999999999835999999199997289977866998999782845546420
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV 159 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (204)
...+.....++.+|++++|+|+..|-+... ..+..++ .++|.|+|+||+|+.+....+++..++. ...
T Consensus 4 ka~r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~-----~~~ 71 (273)
T d1puja_ 4 KARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFE-----NQG 71 (273)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHH-----TTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCCCC--HHHHHHH-----CCCCEEEEEECCCCCCHHHHHHHHHHHH-----HCC
T ss_conf 999999999976999999988889989889--8999998-----6998599998736886677999999998-----469
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCHHH
Q ss_conf 3887411368989689999999999841347
Q 028776 160 CMFEAVSGYDGFGIKESVEWLVEVMERSKRT 190 (204)
Q Consensus 160 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 190 (204)
..++.+|+.++.+..++...+.+.+.+..+.
T Consensus 72 ~~~i~isa~~~~~~~~~~~~~~~~l~~~~~~ 102 (273)
T d1puja_ 72 IRSLSINSVNGQGLNQIVPASKEILQEKFDR 102 (273)
T ss_dssp CCEEECCTTTCTTGGGHHHHHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8651221125777532310333222211134
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.49 E-value=1.7e-07 Score=53.75 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=40.2
Q ss_pred CCCCCEEEEEEECCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 024898999995999889-8999999999983599999919999728997786699899978284554642038874113
Q 028776 89 YEEAHAVVFVIDAACPSR-FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 89 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
+.+.|.+++|+++.+|+- ...+..++..... .+++.++|+||+|+.++.....+...... .....+++.+|+
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~---~~~~~~v~~vSa 80 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEI---YSGLYPIVKTSA 80 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH---HTTTSCEEECCT
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCCCCCHHHHHHHHHHHCC---CCCCEEEEEECC
T ss_conf 56688899998678999998999999999998----69977999967666787999999975403---466136888415
Q ss_pred CCCCCHHHHHHHH
Q ss_conf 6898968999999
Q 028776 168 YDGFGIKESVEWL 180 (204)
Q Consensus 168 ~~~~~i~~l~~~i 180 (204)
+++.|++++..++
T Consensus 81 ~~~~g~~~L~~~l 93 (225)
T d1u0la2 81 KTGMGIEELKEYL 93 (225)
T ss_dssp TTCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 4415576699995
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=1.8e-06 Score=48.49 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC----CCCCEE----------EEEEEE----------------
Q ss_conf 61189998289997679999997301477899999654----563201----------469987----------------
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV----PTVGLN----------IGRIEV---------------- 65 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~----~~~~~~----------~~~~~~---------------- 65 (204)
+.+-.++.|.-|||||||+++++.... +. +..+. ...+++ ...+..
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~~~---~~-riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~ 77 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNEQH---GY-KIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALL 77 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCC---CC-CEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCC---CC-CEEEEEECCCCHHHHHHHHCCCCCCEEEECCCCCEECCCHHHHHHHH
T ss_conf 978899864888999999999985678---98-37999736641122334302566524884388400000036777788
Q ss_pred ----------ECCEEEEEECCCCCCHHHHHHHH--------CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCE
Q ss_conf ----------18279999758991119999984--------024898999995999889899999999998359999991
Q 028776 66 ----------SNSKLVFWDLGGQPGLRSIWEKY--------YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP 127 (204)
Q Consensus 66 ----------~~~~~~~~D~~g~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 127 (204)
......++.+.|........... ....++++.++|+............+...+....
T Consensus 78 ~~~~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD----- 152 (222)
T d1nija1 78 DLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD----- 152 (222)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCS-----
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_conf 999998604677653678622421046899998852014442111340213335544444334678999998688-----
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 99997289977866998999782845546420388741136898968999
Q 028776 128 LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 177 (204)
Q Consensus 128 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 177 (204)
++++||+|+.++ .+.+.+.+.... +..++++++ .....+..++
T Consensus 153 -~ivlNK~Dl~~~--~~~~~~~l~~lN---P~a~Ii~~~-~g~v~~~~ll 195 (222)
T d1nija1 153 -RILLTKTDVAGE--AEKLHERLARIN---ARAPVYTVT-HGDIDLGLLF 195 (222)
T ss_dssp -EEEEECTTTCSC--THHHHHHHHHHC---SSSCEEECC-SSCCCGGGGS
T ss_pred -CCCCCCCCCCCH--HHHHHHHHHHHH---CCCEEEEEE-CCCCCHHHHH
T ss_conf -302446455337--999999999970---798499832-7856899950
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.33 E-value=1.9e-07 Score=53.44 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=34.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC---CCCCC-CEEEEEEEEECCEEEEEECCCCCCH
Q ss_conf 11899982899976799999973014778999996---54563-2014699871827999975899111
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR---IVPTV-GLNIGRIEVSNSKLVFWDLGGQPGL 81 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (204)
.-..+++|..|+|||||+|+|.+......+..... -.+|+ .... +.... .-.++||||...+
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l--~~l~~-gg~iiDTPG~r~~ 160 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LKFDF-GGYVVDTPGFANL 160 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EECTT-SCEEESSCSSTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCEEE--EEECC-CCEEEECCCCCCC
T ss_conf 980899788987788887730535550106842004898751133147--89789-9179968765545
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.22 E-value=1.9e-07 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=17.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 118999828999767999999730
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
.-..+++|..|+|||||+|+|.+.
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 564999877873487898751517
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.17 E-value=7e-07 Score=50.61 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=73.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC----CCCCC-----------CCCCCEEEEE---------------
Q ss_conf 07761189998289997679999997301477899----99965-----------4563201469---------------
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRI-----------VPTVGLNIGR--------------- 62 (204)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~----~~~~~-----------~~~~~~~~~~--------------- 62 (204)
..+...-|+++|++|+||||.+.+|.......... ..+.+ -...++.+..
T Consensus 8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~ 87 (211)
T d1j8yf2 8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV 87 (211)
T ss_dssp CSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf 99999899998999999899999999999977993699972023551567898740146842230244102447899999
Q ss_pred --EEEECCEEEEEECCCCCCHH------HHHHHH--CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf --98718279999758991119------999984--02489899999599988989999999999835999999199997
Q 028776 63 --IEVSNSKLVFWDLGGQPGLR------SIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132 (204)
Q Consensus 63 --~~~~~~~~~~~D~~g~~~~~------~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~ 132 (204)
....+..+.++||+|...+. ...... ....+-+++|+++.... +............ .. -=+++
T Consensus 88 ~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~-~~lI~ 160 (211)
T d1j8yf2 88 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ--KAYDLASKFNQAS----KI-GTIII 160 (211)
T ss_dssp HHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHHC----TT-EEEEE
T ss_pred HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC--CHHHHHHHHHCCC----CC-CEEEE
T ss_conf 87402677369985377676313667899999998625976689998435684--0677876653036----75-53788
Q ss_pred ECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHH
Q ss_conf 28997786699899978284554642038874113689896899
Q 028776 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 176 (204)
Q Consensus 133 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 176 (204)
||.|.... .=.+..... ..+.|+.+++ .|++|+++
T Consensus 161 TKlDet~~--~G~~l~~~~-----~~~lPi~~it--~Gq~v~DL 195 (211)
T d1j8yf2 161 TKMDGTAK--GGGALSAVA-----ATGATIKFIG--TGEKIDEL 195 (211)
T ss_dssp ECTTSCSC--HHHHHHHHH-----TTTCCEEEEE--CSSSTTCE
T ss_pred ECCCCCCC--CCHHHHHHH-----HHCCCEEEEE--CCCCCCCC
T ss_conf 60368886--149988999-----9894979996--79980017
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.08 E-value=2.7e-07 Score=52.72 Aligned_cols=89 Identities=15% Similarity=0.042 Sum_probs=59.0
Q ss_pred HCCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEC
Q ss_conf 402489899999599988-9899999999998359999991999972899778669989997828455464203887411
Q 028776 88 YYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166 (204)
Q Consensus 88 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (204)
.+.+.|.+++|+++.+|+ +...+..++.... . .+++.++|+||+|+.+.....+....+... +...+++++.+|
T Consensus 7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~-~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~-y~~~g~~v~~~S 81 (231)
T d1t9ha2 7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVE-A---NDIQPIICITKMDLIEDQDTEDTIQAYAED-YRNIGYDVYLTS 81 (231)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHH-T---TTCEEEEEEECGGGCCCHHHHHHHHHHHHH-HHHHTCCEEECC
T ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEECCCCCCCHHHHHHHHHHHHH-HHHCCCCCEEEE
T ss_conf 75656889999878899999899999999999-8---699779999560113648888899999999-764455504662
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 368989689999999
Q 028776 167 GYDGFGIKESVEWLV 181 (204)
Q Consensus 167 a~~~~~i~~l~~~i~ 181 (204)
++++.|++++..++.
T Consensus 82 a~~~~gl~~L~~~l~ 96 (231)
T d1t9ha2 82 SKDQDSLADIIPHFQ 96 (231)
T ss_dssp HHHHTTCTTTGGGGT
T ss_pred CCCHHHHHHHHHHHC
T ss_conf 487167999998643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=1.6e-06 Score=48.84 Aligned_cols=147 Identities=18% Similarity=0.138 Sum_probs=73.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC----CCCCCC-----------CCCCEEEEEE---------------
Q ss_conf 7761189998289997679999997301477899----999654-----------5632014699---------------
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRIV-----------PTVGLNIGRI--------------- 63 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~----~~~~~~-----------~~~~~~~~~~--------------- 63 (204)
+.+...|+++|++|+||||.+.+|.......... ..+.++ ...+......
T Consensus 8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~ 87 (213)
T d1vmaa2 8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 87 (213)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99998999989999988999999999999779906999601334204678887764327641036777768998788789
Q ss_pred --EEECCEEEEEECCCCCCHHHHHH----HH---CC-----CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf --87182799997589911199999----84---02-----489899999599988989999999999835999999199
Q 028776 64 --EVSNSKLVFWDLGGQPGLRSIWE----KY---YE-----EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129 (204)
Q Consensus 64 --~~~~~~~~~~D~~g~~~~~~~~~----~~---~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 129 (204)
..++..+.++||+|......... .. .. ..+-.++|+++... .+.+.......... .+-=
T Consensus 88 ~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~~~ 160 (213)
T d1vmaa2 88 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-----NVTG 160 (213)
T ss_dssp HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-----CCCE
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC--CCHHHHHHHHCCCC-----CCCE
T ss_conf 9987699989982455330168888998888766420256665025786212348--43355656540122-----7865
Q ss_pred EEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHH
Q ss_conf 99728997786699899978284554642038874113689896899
Q 028776 130 ILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 176 (204)
Q Consensus 130 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 176 (204)
+++||.|...... .+..... ....|+.+++ .|++++++
T Consensus 161 lI~TKlDe~~~~G--~~l~~~~-----~~~~Pi~~i~--~Gq~v~Dl 198 (213)
T d1vmaa2 161 IILTKLDGTAKGG--ITLAIAR-----ELGIPIKFIG--VGEKAEDL 198 (213)
T ss_dssp EEEECGGGCSCTT--HHHHHHH-----HHCCCEEEEE--CSSSGGGE
T ss_pred EEEECCCCCCCCC--HHHHHHH-----HHCCCEEEEE--CCCCCCCC
T ss_conf 8984246787623--9999999-----9797979996--89980017
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.00 E-value=2.3e-06 Score=47.97 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=60.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCC----CCCCC-----------CCCCCEEEEEE-----------------E
Q ss_conf 1189998289997679999997301477899----99965-----------45632014699-----------------8
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRI-----------VPTVGLNIGRI-----------------E 64 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~-----------------~ 64 (204)
.--++++|++||||||.+..|.......... ..+.+ ....+...... .
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 89 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 89 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999779927999544346408888999998628863111244203678888988876
Q ss_pred EECCEEEEEECCCCCCHHH----HHHHH--CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 7182799997589911199----99984--02489899999599988989999999999835999999199997289977
Q 028776 65 VSNSKLVFWDLGGQPGLRS----IWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 65 ~~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 138 (204)
..+..+.++||+|...... .+... ....+-+++|.++..+. ........+..... .-=+++||.|..
T Consensus 90 ~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~---~~~~~~~~f~~~~~----~~~~I~TKlDe~ 162 (207)
T d1ls1a2 90 LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKVG----VTGLVLTKLDGD 162 (207)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH---HHHHHHHHHHHHTC----CCEEEEECGGGC
T ss_pred HCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH---HHHHHHHHHHHHCC----CCEEEEEECCCC
T ss_conf 33676403345442000036688999998631873699984345561---68999999986479----970588603765
Q ss_pred C
Q ss_conf 8
Q 028776 139 D 139 (204)
Q Consensus 139 ~ 139 (204)
.
T Consensus 163 ~ 163 (207)
T d1ls1a2 163 A 163 (207)
T ss_dssp S
T ss_pred C
T ss_conf 6
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.98 E-value=4.6e-06 Score=46.51 Aligned_cols=118 Identities=22% Similarity=0.231 Sum_probs=61.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC----CCCCCC-----------CCCCEEEEEE----------------
Q ss_conf 761189998289997679999997301477899----999654-----------5632014699----------------
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRIV-----------PTVGLNIGRI---------------- 63 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~----~~~~~~-----------~~~~~~~~~~---------------- 63 (204)
.+..-++++|++||||||.+.+|.......... ..+.++ ...++.+...
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~ 83 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQA 83 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 99779999899999889999999999997799079998136665402667640545682389616774278899998999
Q ss_pred -EEECCEEEEEECCCCCCHHH----HHHHH---C-----CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf -87182799997589911199----99984---0-----24898999995999889899999999998359999991999
Q 028776 64 -EVSNSKLVFWDLGGQPGLRS----IWEKY---Y-----EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130 (204)
Q Consensus 64 -~~~~~~~~~~D~~g~~~~~~----~~~~~---~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iv 130 (204)
...+..+.++||+|...... ..... . ...+-+++|+|+.... +.+.......... .+-=+
T Consensus 84 ~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~-----~~~~l 156 (207)
T d1okkd2 84 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAV-----GLTGV 156 (207)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHH-----CCSEE
T ss_pred HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC--HHHHHHHHHHHCC-----CCCEE
T ss_conf 9987999997175222311277888877777776532567873599996200471--6789999750213-----88648
Q ss_pred EEECCCCCC
Q ss_conf 972899778
Q 028776 131 LANKQDLPD 139 (204)
Q Consensus 131 v~nK~D~~~ 139 (204)
++||.|...
T Consensus 157 I~TKlDet~ 165 (207)
T d1okkd2 157 IVTKLDGTA 165 (207)
T ss_dssp EEECTTSSC
T ss_pred EEECCCCCC
T ss_conf 983368888
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=7.2e-06 Score=45.52 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCC----CCCCCCC-----------CCCCEEEEEEE----------------
Q ss_conf 6118999828999767999999730147789----9999654-----------56320146998----------------
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRIV-----------PTVGLNIGRIE---------------- 64 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~----~~~~~~~-----------~~~~~~~~~~~---------------- 64 (204)
...-|+++|++||||||.+.+|......... ...+.++ ...++......
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a 87 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 87 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99799998999999899999999999977994799823213666120455543433886211356877999999999999
Q ss_pred -EECCEEEEEECCCCCCHHHH----HHH---HCC-----CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf -71827999975899111999----998---402-----48989999959998898999999999983599999919999
Q 028776 65 -VSNSKLVFWDLGGQPGLRSI----WEK---YYE-----EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131 (204)
Q Consensus 65 -~~~~~~~~~D~~g~~~~~~~----~~~---~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 131 (204)
.++..+.++||+|....... ... ..+ ..+-.++|.|+... .+.+.......... .+-=++
T Consensus 88 ~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~~~lI 160 (211)
T d2qy9a2 88 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV-----GLTGIT 160 (211)
T ss_dssp HHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHS-----CCCEEE
T ss_pred HHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCC--CCHHHHHHHHHHCC-----CCCEEE
T ss_conf 87699889965688763207789999999999853046686001220012357--63377876442101-----786489
Q ss_pred EECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 72899778669989997828455464203887411368989689
Q 028776 132 ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175 (204)
Q Consensus 132 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 175 (204)
+||.|...... .+..... ....|+.+++ .|++|++
T Consensus 161 lTKlDe~~~~G--~~l~~~~-----~~~~Pi~~i~--~Gq~v~D 195 (211)
T d2qy9a2 161 LTKLDGTAKGG--VIFSVAD-----QFGIPIRYIG--VGERIED 195 (211)
T ss_dssp EECCTTCTTTT--HHHHHHH-----HHCCCEEEEE--CSSSGGG
T ss_pred EEECCCCCCCC--HHHHHHH-----HHCCCEEEEE--CCCCCCC
T ss_conf 96127888720--9999999-----9897979996--7998103
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.68 E-value=7.4e-06 Score=45.45 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=51.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCE--------EEEEECCCCCCHH-------
Q ss_conf 1899982899976799999973014778999996545632014699871827--------9999758991119-------
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK--------LVFWDLGGQPGLR------- 82 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~D~~g~~~~~------- 82 (204)
.-|+++|.+||||||+.++|.......... ...++.+..+ ....+.++.....
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~------------~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVP------------TREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCA 70 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCC------------EEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCC------------CEEECCCCEEHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 899998999999999999999999746999------------73974530113230454332112222200014687888
Q ss_pred ----HHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
Q ss_conf ----9999840248989999959998898999999999983599999919999728997
Q 028776 83 ----SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137 (204)
Q Consensus 83 ----~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 137 (204)
......+....+.++++|+.++. ......+..+... ...+++++.++++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~vi~d~~~~~--~~~r~~~~~~~~~---~~~~~~~~~~~~~~ 124 (213)
T d1bifa1 71 LAALNDVRKFLSEEGGHVAVFDATNTT--RERRAMIFNFGEQ---NGYKTFFVESICVD 124 (213)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCCCS--HHHHHHHHHHHHH---HTCEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC--HHHHHHHHHHHHH---CCCEEEEEEEECCH
T ss_conf 999999999998618988986067764--8999989999875---49807998850367
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.64 E-value=1.1e-05 Score=44.58 Aligned_cols=26 Identities=31% Similarity=0.495 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 18999828999767999999730147
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~ 43 (204)
.||+++|++|+|||||++.+.+....
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~ 26 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 98999989993899999999814888
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00045 Score=36.49 Aligned_cols=88 Identities=22% Similarity=0.184 Sum_probs=51.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE---ECCEEEEEECCCCCC-------HHH
Q ss_conf 7761189998289997679999997301477899999654563201469987---182799997589911-------199
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPG-------LRS 83 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~-------~~~ 83 (204)
..+..-|.++|+.++|||+|+|.+.+.... .......-..|.|+-...... ....+.++||.|... +..
T Consensus 29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~-f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~ 107 (277)
T d1f5na2 29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKG-FSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 107 (277)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSC-SCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHCCCCCC-CCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCHHHH
T ss_conf 998799998899999799999998099878-7647877777776589985415788746999824543454446504579
Q ss_pred -HHHHHCCCCCEEEEEEECC
Q ss_conf -9998402489899999599
Q 028776 84 -IWEKYYEEAHAVVFVIDAA 102 (204)
Q Consensus 84 -~~~~~~~~~d~ii~v~d~~ 102 (204)
.....+.-++.+||=....
T Consensus 108 ~i~~l~~llSs~~i~N~~~~ 127 (277)
T d1f5na2 108 WIFALAVLLSSTFVYNSIGT 127 (277)
T ss_dssp HHHHHHHHHCSEEEEEEESC
T ss_pred HHHHHHHHHHCEEEEECCCC
T ss_conf 99999999728799932155
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.48 E-value=5.8e-05 Score=40.97 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=21.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 76118999828999767999999730
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
.+.-.|++.|++|+|||++.+.+...
T Consensus 38 ~p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 38 TPLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 99807998896999889999998620
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.47 E-value=3e-05 Score=42.41 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 1189998289997679999997301
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.-+|+|.|++|||||||+++|....
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3289998999998999999999984
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.43 E-value=4.9e-05 Score=41.31 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 6118999828999767999999730147789
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG 46 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~ 46 (204)
+-=.++++|+.|||||||++.+.+...+..+
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G 57 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999799999999996098987
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=3.9e-05 Score=41.84 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 611899982899976799999973014778
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE 45 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~ 45 (204)
+-=.++|+|+.|||||||++.+.+...+..
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~ 57 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 999999999999989999999973578888
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.40 E-value=4.1e-05 Score=41.71 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 118999828999767999999730
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
.++|+++|++||||||+.+.|...
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 897989899999989999999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.38 E-value=6.8e-05 Score=40.61 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7761189998289997679999997301
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
..+..+|++.|++||||||+.+.|....
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9998889998289998899999999985
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.34 E-value=4.9e-05 Score=41.33 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 611899982899976799999973014778
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE 45 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~ 45 (204)
+-=.++++|+.|||||||++.+.+...+..
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~ 69 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRFYDIDE 69 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999999999859999999862168884
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.33 E-value=5.7e-05 Score=41.01 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 6118999828999767999999730147789
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG 46 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~~ 46 (204)
+-=.++++|+.|||||||++.+.+...+..+
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G 91 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGELEASEG 91 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 9999999989998299999999579747882
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=5.4e-05 Score=41.13 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=24.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 76118999828999767999999730147789
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG 46 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~ 46 (204)
++-=.++++|+.|||||||++.+.+.+.+..+
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G 69 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQNLYQPTGG 69 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 49989999999998499999998614378768
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=7.6e-05 Score=40.38 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 189998289997679999997301
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
+-++|+|..|||||||++++....
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 889999189998999999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.27 E-value=9.4e-05 Score=39.91 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 61189998289997679999997301
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
+.++|+++|++||||||....|...+
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 96389998999998899999999986
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.0029 Score=32.42 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=26.0
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 98644077611899982899976799999973014
Q 028776 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 8 ~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
+......+..-+++++|++|+|||+++..+.....
T Consensus 30 l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 30 AIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999547668967988898867799999999998
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.27 E-value=6.1e-05 Score=40.84 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 1899982899976799999973014
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
=.++++|+.|||||||++.+.+...
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~gl~~ 56 (230)
T d1l2ta_ 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (230)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCCCHHHHHCCCCCC
T ss_conf 7999988999982165575068877
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.26 E-value=0.00012 Score=39.39 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=23.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7761189998289997679999997301
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
+-+.++|+++|++||||||+...|...+
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7762169998899998799999999997
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=7.2e-05 Score=40.50 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 11899982899976799999973014778
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVE 45 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~ 45 (204)
-=.++++|+.|||||||++.+.+...+..
T Consensus 26 Gei~~liGpsGsGKSTLl~~i~Gl~~p~s 54 (232)
T d2awna2 26 GEFVVFVGPSGCGKSTLLRMIAGLETITS 54 (232)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 98999998999829999999965878888
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.24 E-value=6.6e-05 Score=40.68 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 18999828999767999999730147789
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG 46 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~~ 46 (204)
=.++++|+.|||||||++.+++...+..|
T Consensus 28 ei~~l~G~NGsGKSTLl~~i~gl~~p~~G 56 (200)
T d1sgwa_ 28 NVVNFHGPNGIGKTTLLKTISTYLKPLKG 56 (200)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 89999999997199999999662056778
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.22 E-value=7.9e-05 Score=40.28 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 1899982899976799999973014778
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNVE 45 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~~ 45 (204)
=.++++|+.|||||||++.+.+...+..
T Consensus 33 e~~~liGpsGaGKSTLl~~i~Gl~~p~s 60 (239)
T d1v43a3 33 EFLVLLGPSGCGKTTTLRMIAGLEEPTE 60 (239)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 8999999999829999999975899987
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.22 E-value=0.00011 Score=39.52 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 61189998289997679999997301
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
+...|+++|++||||||+...|...+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.21 E-value=8.3e-05 Score=40.19 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 89998289997679999997301477
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNV 44 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~~~ 44 (204)
-++++|+.|||||||++.+.+...+.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~~p~ 51 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999799980999999997399989
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.21 E-value=0.00026 Score=37.68 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 7611899982899976799999973014
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
+...+|+|.|.+||||||+++++.+...
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 8378889994035662578999865301
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.19 E-value=0.00012 Score=39.44 Aligned_cols=24 Identities=33% Similarity=0.657 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 189998289997679999997301
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.+|+|+|++||||||+...|...+
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989998899999899999999987
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.16 E-value=0.00011 Score=39.55 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 61189998289997679999997301
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
...+|+++|++||||||+...|...+
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97299998899999899999999987
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.15 E-value=9.5e-05 Score=39.88 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 189998289997679999997301477
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNV 44 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~ 44 (204)
=-++++|+.|+|||||++.+.+...+.
T Consensus 33 ei~~liGpnGaGKSTl~~~i~Gl~~p~ 59 (240)
T d1ji0a_ 33 QIVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 799999999985999999996788888
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.15 E-value=0.00011 Score=39.61 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 118999828999767999999730147
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~ 43 (204)
-=.++++|+.|||||||++.+.+...+
T Consensus 29 Ge~~~liG~sGaGKSTll~~i~gl~~p 55 (240)
T d1g2912 29 GEFMILLGPSGCGKTTTLRMIAGLEEP 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 989999999998099999999648788
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=9.8e-05 Score=39.81 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 1899982899976799999973014
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
=-++++|+.|||||||++.+.+...
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~Gl~~ 56 (240)
T d3dhwc1 32 QIYGVIGASGAGKSTLIRCVNLLER 56 (240)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 7999989998988899998758863
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.09 E-value=0.00017 Score=38.66 Aligned_cols=24 Identities=25% Similarity=0.619 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 189998289997679999997301
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.+|+++|++||||||+...|...+
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989998899998799999999987
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.08 E-value=0.00017 Score=38.62 Aligned_cols=24 Identities=42% Similarity=0.457 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 189998289997679999997301
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.+|+++|++||||||+...|...+
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989998899999799999999998
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.08 E-value=0.00012 Score=39.34 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 899982899976799999973014778
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSNVE 45 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~~~~ 45 (204)
-++++|+.|||||||++.+.+...+..
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~~p~~ 58 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFLKADE 58 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999999999849999999977976887
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.08 E-value=0.00027 Score=37.57 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 189998289997679999997301
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
..|++.|++|+||||+...+.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799988979988999999999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.00012 Score=39.32 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 11899982899976799999973014778
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVE 45 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~ 45 (204)
-=.++++|+.|+|||||++.+.+...+..
T Consensus 28 Gei~glvG~nGaGKSTLl~~l~G~~~p~~ 56 (238)
T d1vpla_ 28 GEIFGLIGPNGAGKTTTLRIISTLIKPSS 56 (238)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 97999999999999999999966988788
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.06 E-value=0.00013 Score=39.21 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 6118999828999767999999730147
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~ 43 (204)
.-=.++++|+.|||||||++.+.+...+
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~~p 54 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLEKP 54 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9979999989998299999999747667
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.06 E-value=0.00013 Score=39.14 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 1189998289997679999997301
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.++|+++|++||||||+...+....
T Consensus 1 ~p~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 1 APKAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9948998899998899999999984
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.06 E-value=8.6e-05 Score=40.11 Aligned_cols=27 Identities=33% Similarity=0.292 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 189998289997679999997301477
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYSNV 44 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~~~ 44 (204)
=-++++|+.|||||||++.+.+...+.
T Consensus 27 e~~~liGpsGaGKSTll~~l~Gl~~p~ 53 (229)
T d3d31a2 27 EYFVILGPTGAGKTLFLELIAGFHVPD 53 (229)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 899999899982999999996476888
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.04 E-value=7.7e-05 Score=40.33 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 611899982899976799999973014778
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE 45 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~~~~~ 45 (204)
+-=.++++|+.|||||||++.+.+...+..
T Consensus 43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~ 72 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTLINLIPRFYDVTS 72 (255)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 998999988999809999999971278630
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00022 Score=38.09 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 18999828999767999999730
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~ 40 (204)
.+|+++|++||||||....|...
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98999879999989999999998
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.00 E-value=0.00036 Score=36.98 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=27.7
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9999864407761189998289997679999997301
Q 028776 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
...+..|....+...+++.|++|+||||++..+....
T Consensus 33 ~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 33 VKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp HHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999985999769997899974879999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.98 E-value=0.00024 Score=37.83 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 1189998289997679999997301
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
..+|+++|++||||||+...|...+
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5699998999999899999999996
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.97 E-value=0.00021 Score=38.19 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 899982899976799999973014
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
-+.|+|..|||||||++++.....
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999980999989999999999998
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.93 E-value=0.00027 Score=37.62 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89998289997679999997301
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~ 41 (204)
-|++.|++||||||+.+.|....
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 89998999999899999999980
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.93 E-value=0.00046 Score=36.45 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=26.7
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89999864407761189998289997679999997301
Q 028776 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
+...+.. ......+-|+|.|..||||||+.+.|....
T Consensus 10 ~~~~~~~-~~~~~~~iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 10 LCKTILA-IKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp HHHHHHT-SCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999985-267998899978988789999999999983
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.92 E-value=0.0001 Score=39.75 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 1189998289997679999997301477
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNV 44 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~ 44 (204)
-=.++++|+.|||||||++.+.+...+.
T Consensus 31 Ge~~~iiG~sGsGKSTll~~i~gl~~p~ 58 (242)
T d1oxxk2 31 GERFGILGPSGAGKTTFMRIIAGLDVPS 58 (242)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 9899999899980999999997586888
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.92 E-value=0.00049 Score=36.30 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=28.7
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8999986440776118999828999767999999730
Q 028776 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
....+..|.......++++.|++|+||||++..+...
T Consensus 23 ~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 23 TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp HHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 9999999998699874999889998705469999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.90 E-value=0.00038 Score=36.83 Aligned_cols=28 Identities=36% Similarity=0.370 Sum_probs=22.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7761189998289997679999997301
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
......|+++|++||||||+...|...+
T Consensus 5 ~~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 5 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997289998999999899999999985
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00023 Score=37.98 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 1899982899976799999973014
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
=-++++|+.|+|||||++.+.+...
T Consensus 26 ei~~iiG~nGaGKSTLl~~l~Gl~~ 50 (231)
T d1l7vc_ 26 EILHLVGPNGAGKSTLLARMAGMTS 50 (231)
T ss_dssp CEEECBCCTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8999998999809999999948879
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.90 E-value=0.00025 Score=37.73 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 899982899976799999973
Q 028776 19 HVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~ 39 (204)
-|++.|.+||||||+.+.+..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00064 Score=35.71 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=24.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 077611899982899976799999973014
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
..+..+-|+|.|.+||||||+.+.|.....
T Consensus 76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 76 GQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 789988999968999987689999999973
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.00035 Score=37.01 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 1189998289997679999997301
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.+.|+|+|++||||||....+...+
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9399997999999899999999986
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.86 E-value=0.00032 Score=37.19 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 899982899976799999973014
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
-|+++|++||||||+++.|.....
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999989999999999999984589
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.00054 Score=36.07 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=27.7
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 999986440776118999828999767999999730
Q 028776 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
...+..+.......++++.|++|+||||++..+...
T Consensus 21 ~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 21 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999999998699885999899999849999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.84 E-value=0.00038 Score=36.84 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=22.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7761189998289997679999997301
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
..+-+.|.++|.+||||||+...|....
T Consensus 3 ~~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 3 ATQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997699988999999999999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.00037 Score=36.92 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8999828999767999999730
Q 028776 19 HVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~ 40 (204)
+|.++|++||||||+...|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 4999899999999999999999
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.00084 Score=35.12 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=25.8
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9864407761189998289997679999997301
Q 028776 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 8 ~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
+-.....+..-+++++|++|+|||+++..|....
T Consensus 34 l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 34 TIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999953588873998358754479999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.76 E-value=0.00049 Score=36.31 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 77611899982899976799999973
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
.....-|+++|.+||||||+..++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99998999989999989999999997
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.00073 Score=35.41 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=28.1
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9999864407761189998289997679999997301
Q 028776 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
...+..|.......++++.|++|+||||++..+....
T Consensus 23 ~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 23 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999976999859998899877558999999985
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.00036 Score=37.00 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 8999828999767999999730147
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~~ 43 (204)
+|.|.|++|+|||||+..+......
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999889997199999999999997
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.74 E-value=0.00039 Score=36.77 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89998289997679999997301
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~ 41 (204)
-|+|.|.+||||||+++.|....
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999989899999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.70 E-value=0.00089 Score=35.00 Aligned_cols=167 Identities=11% Similarity=0.164 Sum_probs=78.4
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEE-ECCCCCCH---
Q ss_conf 99986440776118999828999767999999730147789999965456320146998718279999-75899111---
Q 028776 6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW-DLGGQPGL--- 81 (204)
Q Consensus 6 ~~~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~g~~~~--- 81 (204)
...+..++..+..-|.+.|.+||||||+.+.|........+.. ......+..+-.+- |.+-....
T Consensus 13 ~~~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~-----------~~~ldgD~iR~~l~~~l~ys~~~r~~ 81 (208)
T d1m7ga_ 13 RSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVH-----------AYRLDGDNIRFGLNKDLGFSEADRNE 81 (208)
T ss_dssp HHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCC-----------EEEECHHHHTTTTTTTCCSSHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCE-----------EEEECCHHHHHHHCCCCCCCHHHHHH
T ss_conf 9999998589986999989999998999999998877742750-----------89975367887636799987667788
Q ss_pred --HH--HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCCCC--CCCHHHHHHHH--
Q ss_conf --99--999840248989999959998898999999999983599---99991999972899778--66998999782--
Q 028776 82 --RS--IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD--AVSADELARYL-- 150 (204)
Q Consensus 82 --~~--~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~--~~~~~~~~~~~-- 150 (204)
.. .....+.. .+...+++...+ +.....+...+..... ....+.+.|.-+|++.. ...........
T Consensus 82 ~~~r~~~~a~~~~~-~g~~viv~~i~~--~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~~~~~ 158 (208)
T d1m7ga_ 82 NIRRIAEVAKLFAD-SNSIAITSFISP--YRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKARE 158 (208)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEECCCC--CHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCCEEEECCCC--CHHHHHHHHHHHHHHCCCHHCCCCEEEEEECCCHHHHHHHHCCCCHHHHHC
T ss_conf 99999999998752-697326510200--189999999875541000103785389997488999987501232113313
Q ss_pred ---C----C-CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf ---8----4-55464203887411368989689999999999841
Q 028776 151 ---D----L-KKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 151 ---~----~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 187 (204)
. . ..+..+..+.+.+. ..+.++++..+.|.+.+...
T Consensus 159 ~~~~~~~gvd~~ye~P~~~dl~Id-t~~~s~~e~~~~Ii~~L~~~ 202 (208)
T d1m7ga_ 159 GVIKEFTGISAPYEAPANPEVHVK-NYELPVQDAVKQIIDYLDTK 202 (208)
T ss_dssp TSSSSCBTTTBCCCCCSSCSEEEE-CSSSCHHHHHHHHHHHHHHT
T ss_pred CCCCCEECCCCCCCCCCCCCEEEE-CCCCCHHHHHHHHHHHHHHC
T ss_conf 765522124666789999857985-99999999999999999986
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.70 E-value=0.00055 Score=36.05 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99982899976799999973014
Q 028776 20 VLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 20 i~iiG~~~~GKStli~~l~~~~~ 42 (204)
|+|+|++||||+||+++|.....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.68 E-value=0.00042 Score=36.61 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8999828999767999999730
Q 028776 19 HVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~ 40 (204)
+|+++|++||||||+...|...
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 3999899999889999999998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.64 E-value=0.00073 Score=35.43 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 61189998289997679999997301
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
+.+.|+|-|++||||||....|...+
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 96599978999879899999999996
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.64 E-value=0.00066 Score=35.65 Aligned_cols=28 Identities=36% Similarity=0.328 Sum_probs=23.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7761189998289997679999997301
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.+....+++.|++|+||||+.+.+....
T Consensus 32 ~~~~~~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 32 GEVLDHVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp TCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8877748987999973889999998503
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.63 E-value=0.00061 Score=35.80 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 61189998289997679999997301
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
...-|.++|++||||||+...|...+
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 78289998999998799999999986
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.0087 Score=30.01 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=25.7
Q ss_pred HHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 999986440776118-99982899976799999973014
Q 028776 5 FYGLWKYIFTKTEFH-VLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~-i~iiG~~~~GKStli~~l~~~~~ 42 (204)
...+..+....+-.+ +++.|++|+|||+++..+.....
T Consensus 21 ~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 21 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp HHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999999998599870598888998758999999999846
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.00071 Score=35.48 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 899982899976799999973014
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
-|+++|+.|+||+||+++|.....
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999899999999999997097
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.57 E-value=0.00076 Score=35.35 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=22.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 776118999828999767999999730
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
......+++.|++|+||||+++.+...
T Consensus 32 ~~~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 32 KEPLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp SSCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 888873898897998788899999998
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.56 E-value=0.00086 Score=35.07 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=23.6
Q ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6440776118999828999767999999730
Q 028776 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 10 ~~~~~~~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
.....+..-+++++|++|+|||+++..|...
T Consensus 36 ~~L~r~~k~n~llvG~~GvGKtaiv~~la~~ 66 (387)
T d1qvra2 36 QILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (387)
T ss_dssp HHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 9982488999768799998899999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.54 E-value=0.00078 Score=35.28 Aligned_cols=23 Identities=48% Similarity=0.535 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99982899976799999973014
Q 028776 20 VLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 20 i~iiG~~~~GKStli~~l~~~~~ 42 (204)
|+|+|++||||+|+.++|.....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.0008 Score=35.23 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 1189998289997679999997301
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.+-|+|.|..||||||+.+.|....
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9899998999787999999999996
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00077 Score=35.32 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 899982899976799999973014
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
=++++|+.||||+||+++|.....
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999999999999999999986398
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.50 E-value=0.0007 Score=35.52 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 899982899976799999973
Q 028776 19 HVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~ 39 (204)
-|++.|++||||||+.+.|..
T Consensus 6 iI~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999988999988999999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.49 E-value=0.00086 Score=35.06 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 1899982899976799999973014
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
.-|++.|.+||||||+.+.|.....
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 5999989999998999999999728
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.00075 Score=35.36 Aligned_cols=26 Identities=12% Similarity=0.363 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 61189998289997679999997301
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
...-++++|.+||||||+...|....
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 87189998999989899999999986
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.45 E-value=0.00074 Score=35.38 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 899982899976799999973
Q 028776 19 HVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~ 39 (204)
.|+++|++||||||+.+.|..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 889988999988999999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.40 E-value=0.016 Score=28.64 Aligned_cols=59 Identities=24% Similarity=0.220 Sum_probs=33.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCC
Q ss_conf 7761189998289997679999997301477899999654563201469987182799997589
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 77 (204)
.++..-|++-|+-|+|||||++.+........ ....||.... .........+.-+|.=.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~----~V~SPTF~l~-~~Y~~~~~~i~H~DlYR 88 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG----NVKSPTYTLV-EEYNIAGKMIYHFDLYR 88 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTTCCS----CCCCCTTTCE-EEEEETTEEEEEEECTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC----CCCCCCEEEE-EEECCCCCEEEEEEEEC
T ss_conf 79982999966877658899999876422346----6678753788-76305785289999751
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.35 E-value=0.00092 Score=34.93 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1899982899976799999973
Q 028776 18 FHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~ 39 (204)
-||+++|++|||||-|.++|..
T Consensus 50 sNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
T ss_conf 6479989999889999999998
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.33 E-value=0.001 Score=34.74 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=23.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 0776118999828999767999999730
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
...+.+-|+|-|..||||||+++.|...
T Consensus 5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7998619998899998889999999987
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.30 E-value=0.0011 Score=34.57 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9998289997679999997301
Q 028776 20 VLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 20 i~iiG~~~~GKStli~~l~~~~ 41 (204)
|+|.|.+||||||+++.|....
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998989989899999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.25 E-value=0.0019 Score=33.33 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 61189998289997679999997301
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
....+++.|++|+||||++..+....
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 87449998799998889999999998
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.25 E-value=0.0012 Score=34.27 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6118999828999767999999730
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
+.-.++++|++|||||.|.+++...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.21 E-value=0.00086 Score=35.08 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 77611899982899976799999973
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
+++++-|+|.|..||||||+.+++..
T Consensus 1 s~k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 1 SKKHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp CTTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99888999989997809999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.00062 Score=35.78 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6118999828999767999999730
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
+-..|.++|.+||||||+.+.|...
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.17 E-value=0.0017 Score=33.54 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=20.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 761189998289997679999997
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLK 38 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~ 38 (204)
+..+-|+|.|..||||||+.+.|.
T Consensus 1 k~p~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 1 KHPIIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 999899998988778999999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.17 E-value=0.0027 Score=32.60 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 7611899982899976799999973014
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
...-.+++.|++|+|||++++.+.....
T Consensus 41 ~~~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 41 HHYPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8888168889899989999999999975
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.15 E-value=0.0022 Score=33.02 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6118999828999767999999730
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
..-.++|.|+.|+|||||+.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.0026 Score=32.64 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=21.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 077611899982899976799999973
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
..+..+-|+|.|.+|||||||...+..
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 899988998379987889999999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.0022 Score=33.04 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 1189998289997679999997301
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.+-|+|.|++||||+|....|...+
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9889977999889899999999996
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.98 E-value=0.002 Score=33.19 Aligned_cols=23 Identities=48% Similarity=0.744 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89998289997679999997301
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~ 41 (204)
-|+|-|..||||||++..|....
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.95 E-value=0.0031 Score=32.25 Aligned_cols=22 Identities=27% Similarity=0.069 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9998289997679999997301
Q 028776 20 VLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 20 i~iiG~~~~GKStli~~l~~~~ 41 (204)
+.+.|++|+|||++++.+....
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9967899989999999999998
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.94 E-value=0.0046 Score=31.38 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7611899982899976799999973
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
...-.+++.|++|+|||++++++..
T Consensus 36 ~~~~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 36 KPPRGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 9886468766998883089999998
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.90 E-value=0.0049 Score=31.24 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 611899982899976799999973
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
..-.+++.|++|+|||++++++..
T Consensus 41 ~~~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 41 IPKGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 886488766898883599999998
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.85 E-value=0.032 Score=27.18 Aligned_cols=35 Identities=23% Similarity=0.118 Sum_probs=24.6
Q ss_pred HHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99864407-761189998289997679999997301
Q 028776 7 GLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 7 ~~~~~~~~-~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.+..+... ....++++.|++|+||||++..+....
T Consensus 22 ~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 22 FLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp HHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999999769987859988999998899999999762
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.81 E-value=0.0047 Score=31.37 Aligned_cols=27 Identities=30% Similarity=0.224 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 761189998289997679999997301
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.....+++.|++|+|||++...+.+..
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 976769998999988899999999985
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.72 E-value=0.024 Score=27.79 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 644077611899982899976799999973014
Q 028776 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 10 ~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
......+.=-|++.|++||||||.+..+.....
T Consensus 151 ~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 151 RRLIKRPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp HHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 999864105489876787774477999866625
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.72 E-value=0.036 Score=26.88 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=46.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE-EEEECCCCCCC-CCHH
Q ss_conf 827999975899111999998402489899999599988989999999999835999999199-99728997786-6998
Q 028776 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDLPDA-VSAD 144 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~-~~~~ 144 (204)
...+.++|+|+..... ....+..+|.++++...+. .++.........+. . .+.|++ ++.|+.+.... ....
T Consensus 111 ~~d~IiiD~~~~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~-~---~~~~~~giv~N~~~~~~~~~~~~ 183 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQLD--AMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLK-K---AGLAILGFVLNRYGRSDRDIPPE 183 (237)
T ss_dssp GCSEEEEECCSSSSHH--HHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHH-H---TTCEEEEEEEEEETSCTTCCCHH
T ss_pred CCCEEEECCCCCCCCC--CHHHHHHHHCCCCCCCCCC-EECCHHHHHHHHHH-H---HHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 2898998043321111--0012222210343432100-00110367777775-3---10234432101356532002068
Q ss_pred HHHHHHC
Q ss_conf 9997828
Q 028776 145 ELARYLD 151 (204)
Q Consensus 145 ~~~~~~~ 151 (204)
....+..
T Consensus 184 ~~~~~~~ 190 (237)
T d1g3qa_ 184 AAEDVME 190 (237)
T ss_dssp HHHHHHC
T ss_pred HHHHHCC
T ss_conf 8886338
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0041 Score=31.63 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 61189998289997679999997301
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
..-.+++.|++|+|||++++.+....
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHC
T ss_conf 88867866899888228999999982
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.50 E-value=0.007 Score=30.47 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 61189998289997679999997301
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
....|++.|++|+|||++++++.+..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 88757887899876304778878771
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.0039 Score=31.76 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9998289997679999997301
Q 028776 20 VLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 20 i~iiG~~~~GKStli~~l~~~~ 41 (204)
|++-|..||||||+++.|....
T Consensus 5 IviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998998887999999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0046 Score=31.40 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 189998289997679999997
Q 028776 18 FHVLILGIDKAGKTTLLEKLK 38 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~ 38 (204)
+-|+|.|..||||||+.+.|.
T Consensus 4 ~iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799978988688999999999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.47 E-value=0.003 Score=32.36 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99982899976799999973
Q 028776 20 VLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 20 i~iiG~~~~GKStli~~l~~ 39 (204)
-+++|+.|||||+++.++.-
T Consensus 27 nvlvG~NgsGKS~iL~Ai~~ 46 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAIKW 46 (308)
T ss_dssp EEEECCTTTCSTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999848999999999
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.47 E-value=0.0046 Score=31.38 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=22.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 776118999828999767999999730
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
..+.-+++++|++|||||-+..+|...
T Consensus 65 ~~p~~niLfiGPTGvGKTElAk~LA~~ 91 (364)
T d1um8a_ 65 ELSKSNILLIGPTGSGKTLMAQTLAKH 91 (364)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 678753244189986378999999864
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.46 E-value=0.015 Score=28.83 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=21.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 776118999828999767999999730
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
.....-|+|.|+.|+|||||...+.+.
T Consensus 41 ~~~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 41 DLDSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp TSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 878408999779978889999999985
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.44 E-value=0.0036 Score=31.91 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=23.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7761189998289997679999997301
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
+....+|.|=|.-|+||||+++.|....
T Consensus 2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~l 29 (331)
T d1osna_ 2 KMGVLRIYLDGAYGIGKTTAAEEFLHHF 29 (331)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7661699998887788999999999987
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.37 E-value=0.0054 Score=31.05 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 1189998289997679999997
Q 028776 17 EFHVLILGIDKAGKTTLLEKLK 38 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~ 38 (204)
.+-|++.|..||||||+.+.+.
T Consensus 2 ~~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 2 TYIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp CEEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 6899988888788999999999
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.36 E-value=0.0024 Score=32.80 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 189998289997679999997301
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
-++++.|++|+|||++.+++....
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iL 52 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALL 52 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 708998899852999999998737
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.0045 Score=31.45 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=18.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 61189998289997679999997
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLK 38 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~ 38 (204)
+.++ +|+|+.|+|||+++.++.
T Consensus 25 ~~l~-~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 25 SNFT-SIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CSEE-EEECSTTSSHHHHHHHHH
T ss_pred CCEE-EEECCCCCCHHHHHHHHH
T ss_conf 9989-999999998899999999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.053 Score=26.05 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 61189998289997679999997301
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
..--+.+.|++++|||+|.-++....
T Consensus 53 ~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 53 MGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 73589980577747899999999998
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0027 Score=32.55 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 189998289997679999997301
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
-.|+|-|..||||||+++.|....
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 889998788877999999999997
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.20 E-value=0.0093 Score=29.87 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 61189998289997679999997301
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
+..+|.|=|..|+||||+++.|....
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~~l 30 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMASAA 30 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 65899998886678999999999986
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.0057 Score=30.94 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 189998289997679999997301
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.=|+|-|..||||||++..|....
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 599998998889999999999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.0074 Score=30.35 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 899982899976799999973014
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
-|+|=|..||||||+++.|.....
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989988859999999999873
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.70 E-value=0.0094 Score=29.84 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89998289997679999997301
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~ 41 (204)
=|++-|..||||||+++.|....
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998998886999999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.69 E-value=0.013 Score=29.13 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6118999828999767999999730
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
+.-.++++|++|+|||.|...+...
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.61 E-value=0.0095 Score=29.81 Aligned_cols=24 Identities=38% Similarity=0.328 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 611899982899976799999973
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
.-.+|.|=|.-|+||||+++.|..
T Consensus 3 ~~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 3 TLLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 742999989867789999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.59 E-value=0.011 Score=29.42 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89998289997679999997301
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.+++.|++|+|||.+.+.+.+..
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 38887799850889999999986
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.35 E-value=0.013 Score=29.20 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 611899982899976799999973
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
+---+.|.|++|+|||+|..++..
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 996999983899988999999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.34 E-value=0.002 Score=33.23 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99982899976799999973
Q 028776 20 VLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 20 i~iiG~~~~GKStli~~l~~ 39 (204)
.+|+|+.||||||++.++.-
T Consensus 27 tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 89988999987999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.013 Score=29.05 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6118999828999767999999730
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
+---+.+.|++|+|||+|...+...
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9979999958999999999999999
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.14 E-value=0.013 Score=29.06 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 61189998289997679999997
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLK 38 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~ 38 (204)
..-+++|+|.+|+|||+++..+.
T Consensus 49 ~~~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHH
T ss_conf 52658999079996899999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.12 E-value=0.015 Score=28.81 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 611899982899976799999973
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
..--++|.|++|+|||+|..++..
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 887999985898988999999999
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.06 E-value=0.016 Score=28.68 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 18999828999767999999730
Q 028776 18 FHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l~~~ 40 (204)
.-|++.|..||||||+.+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.05 E-value=0.016 Score=28.69 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 611899982899976799999973
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
...-|++.|..|+||||+...|..
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 999999980899998999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.92 E-value=0.017 Score=28.55 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 611899982899976799999973
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
...-+++.|+.|+||||+...|..
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999981899998999999998
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.86 E-value=0.018 Score=28.43 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6118999828999767999999730
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
+.--+++.|++|+|||+|..++...
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9849999918999999999999999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.81 E-value=0.12 Score=24.19 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=18.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 611899982899976799999973
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
..--..+.|++++|||+|.-.+..
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 633699964887488999999999
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.33 E-value=0.15 Score=23.74 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=42.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCE-EEEEEECCCCCC-CCCHH
Q ss_conf 8279999758991119999984024898999995999889899999999998359999991-999972899778-66998
Q 028776 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPD-AVSAD 144 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~-~~~~~ 144 (204)
...+.++|+|+...... ...+..+|.++++...+. .+.............. +.+ +-++.|+.+... ....+
T Consensus 109 ~~D~viiD~~~~~~~~~--~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~~~~~~----~~~~~~iv~N~~~~~~~~~~~~ 181 (232)
T d1hyqa_ 109 STDILLLDAPAGLERSA--VIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERL----GTKVLGVVVNRITTLGIEMAKN 181 (232)
T ss_dssp TCSEEEEECCSSSSHHH--HHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHH----TCEEEEEEEEEECTTTHHHHHH
T ss_pred CCCEEEECCCCCCCCHH--HHHHHHHHEEEEECCCCC-CCHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCCHHH
T ss_conf 36435303322222025--777654230322022221-1024566666654310----1112222233344344320135
Q ss_pred HHHHHHC
Q ss_conf 9997828
Q 028776 145 ELARYLD 151 (204)
Q Consensus 145 ~~~~~~~ 151 (204)
++.+.+.
T Consensus 182 ~i~~~~~ 188 (232)
T d1hyqa_ 182 EIEAILE 188 (232)
T ss_dssp HHHHHTT
T ss_pred HHHHHCC
T ss_conf 6776459
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=93.28 E-value=0.08 Score=25.15 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=24.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 0776118999828999767999999730147
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKStli~~l~~~~~~ 43 (204)
....+-.+.+.|++++|||+|++.+......
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~ 130 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9976179999858988778999999998362
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.28 E-value=0.064 Score=25.65 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99982899976799999973014
Q 028776 20 VLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 20 i~iiG~~~~GKStli~~l~~~~~ 42 (204)
+.+.|++|+|||-|+.++.....
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 79988899839999999998744
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=93.20 E-value=0.028 Score=27.46 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=18.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 611899982899976799999973
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
.++ +++.|.+|+|||+|+..+..
T Consensus 35 G~l-~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 35 GEV-IMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TCE-EEEECSTTSSHHHHHHHHHH
T ss_pred CEE-EEEEECCCCCHHHHHHHHHH
T ss_conf 808-99994799979999999997
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.17 E-value=0.028 Score=27.48 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=20.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 611899982899976799999973
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
...-|++.|..|+||||+...+..
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 999999980899999999999998
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=93.08 E-value=0.051 Score=26.16 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=23.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7761189998289997679999997301
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~ 41 (204)
..+.-.+++.|++++|||.++.++....
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l 77 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFI 77 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9873189998899856899999999982
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.00 E-value=0.03 Score=27.27 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 611899982899976799999973
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
+---++|.|++|+|||+|...+..
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 885999991799998999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.032 Score=27.18 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6118999828999767999999730
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
+---+.|.|++|+|||+|..++...
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8979999889988788999999999
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=92.75 E-value=0.025 Score=27.69 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHH-HHH
Q ss_conf 8999828999767999-999
Q 028776 19 HVLILGIDKAGKTTLL-EKL 37 (204)
Q Consensus 19 ~i~iiG~~~~GKStli-~~l 37 (204)
.++|.|.+|+||||.+ .++
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv 35 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKI 35 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHHH
T ss_conf 98999628843899999999
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=92.67 E-value=0.028 Score=27.46 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHHHH
Q ss_conf 899982899976799999
Q 028776 19 HVLILGIDKAGKTTLLEK 36 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~ 36 (204)
.++|.|.+|+||||.+-.
T Consensus 26 ~~lV~g~aGSGKTt~l~~ 43 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVLTH 43 (318)
T ss_dssp CEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHH
T ss_conf 989995298668999999
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.66 E-value=0.048 Score=26.29 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=26.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 0776118999828999767999999730147
Q 028776 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSN 43 (204)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKStli~~l~~~~~~ 43 (204)
+.++-+.|.+.|..|+|||++.++|......
T Consensus 2 r~kqgf~i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 2 RPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp GGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8765169998088877888999999999987
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=92.49 E-value=0.1 Score=24.56 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8999828999767999999730
Q 028776 19 HVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~ 40 (204)
-.++.|.+|+|||+|...+...
T Consensus 31 ~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999928999899999999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.45 E-value=0.21 Score=23.08 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=19.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 118999828999767999999730
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~ 40 (204)
.--..+.|++++|||+|...+...
T Consensus 57 g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 57 GRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 547898058765227999999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.35 E-value=0.21 Score=23.01 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=23.1
Q ss_pred HHCCCCCC-EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 44077611-899982899976799999973014
Q 028776 11 YIFTKTEF-HVLILGIDKAGKTTLLEKLKSVYS 42 (204)
Q Consensus 11 ~~~~~~~~-~i~iiG~~~~GKStli~~l~~~~~ 42 (204)
.....+-. .+++.|++|+||||++..+.....
T Consensus 17 ~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 17 SYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp HHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 998599673798889998759999999998210
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.19 E-value=0.048 Score=26.27 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=21.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 77611899982899976799999973
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
..+-=+++|+|..|+|||+|+..+..
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 45787556867999887899999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.04 E-value=0.048 Score=26.28 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=18.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 61189998289997679999997
Q 028776 16 TEFHVLILGIDKAGKTTLLEKLK 38 (204)
Q Consensus 16 ~~~~i~iiG~~~~GKStli~~l~ 38 (204)
+---+.|.|++|+|||+|...+.
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHH
T ss_conf 98399999479999999999999
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.83 E-value=0.06 Score=25.80 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89998289997679999997301
Q 028776 19 HVLILGIDKAGKTTLLEKLKSVY 41 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l~~~~ 41 (204)
.++++|++|+|||.+...+....
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99997888624899999999983
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=91.82 E-value=0.064 Score=25.65 Aligned_cols=22 Identities=36% Similarity=0.289 Sum_probs=17.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 1189998289997679999997
Q 028776 17 EFHVLILGIDKAGKTTLLEKLK 38 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~ 38 (204)
..-.+|.|++|+|||+++..+.
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~l 184 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKLL 184 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHHHH
T ss_conf 8859997689887521699999
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=91.25 E-value=0.053 Score=26.04 Aligned_cols=17 Identities=47% Similarity=0.620 Sum_probs=13.7
Q ss_pred EEECCCCCCHHH-HHHHH
Q ss_conf 998289997679-99999
Q 028776 21 LILGIDKAGKTT-LLEKL 37 (204)
Q Consensus 21 ~iiG~~~~GKSt-li~~l 37 (204)
+++|+-.||||| |+.++
T Consensus 6 ~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRL 23 (139)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHH
T ss_conf 999150678999999999
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=90.69 E-value=0.087 Score=24.96 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=43.0
Q ss_pred CCEEEEEECCCCCCHHH-HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEE-EEEEECCCCCCCCC-H
Q ss_conf 82799997589911199-999840248989999959998898999999999983599999919-99972899778669-9
Q 028776 67 NSKLVFWDLGGQPGLRS-IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDLPDAVS-A 143 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~-~ 143 (204)
...+.++|+|+...... ........+|.++++...+ ..++.........+.......+.++ -++.|+.+...... .
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~ 193 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELL 193 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHH
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHCCCCEEECCCHH-HHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCCCHH
T ss_conf 6888986467752254899999862157333213404-667778999999998640345200133487666277751011
Q ss_pred HHHHHHHC
Q ss_conf 89997828
Q 028776 144 DELARYLD 151 (204)
Q Consensus 144 ~~~~~~~~ 151 (204)
+++.+.+.
T Consensus 194 ~~~~~~~~ 201 (269)
T d1cp2a_ 194 DAFAKELG 201 (269)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHCC
T ss_conf 35676629
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=88.95 E-value=0.15 Score=23.84 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=20.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7761189998289997679999997
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLK 38 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~ 38 (204)
......|+|.|++|+||+.+...+-
T Consensus 20 a~~~~pvlI~Ge~GtGK~~~A~~ih 44 (247)
T d1ny5a2 20 SCAECPVLITGESGVGKEVVARLIH 44 (247)
T ss_dssp TTCCSCEEEECSTTSSHHHHHHHHH
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 6889978998999817999999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.87 E-value=0.15 Score=23.82 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 11899982899976799999973
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~ 39 (204)
-=|++++|..|+|||+|+..+..
T Consensus 68 GQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 68 GGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 88777667999898999999999
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=88.69 E-value=0.31 Score=22.22 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=16.9
Q ss_pred CCCCE-EEEECCCCCCHHHHHHHH
Q ss_conf 76118-999828999767999999
Q 028776 15 KTEFH-VLILGIDKAGKTTLLEKL 37 (204)
Q Consensus 15 ~~~~~-i~iiG~~~~GKStli~~l 37 (204)
++..+ |++.|-.|+||||+.-.|
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 379789999799988789999999
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.86 E-value=0.3 Score=22.29 Aligned_cols=114 Identities=12% Similarity=0.078 Sum_probs=54.1
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 98644077611899982899976799999973014778999996545632014699871827999975899111999998
Q 028776 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEK 87 (204)
Q Consensus 8 ~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 87 (204)
+..+...+....+++.|++|+||+++...+.......... ..++..+..++.. -|.+..+.....
T Consensus 6 l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~---------h~D~~~i~~~~~~------I~Id~IR~i~~~ 70 (198)
T d2gnoa2 6 LKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPK---------ASDVLEIDPEGEN------IGIDDIRTIKDF 70 (198)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCC---------TTTEEEECCSSSC------BCHHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC---------CCCEEEEECCCCC------CCHHHHHHHHHH
T ss_conf 9999966998559988989988899999999998434567---------9988998077678------998999999999
Q ss_pred HCCC---CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 4024---89899999599988989999999999835999999199997289977
Q 028776 88 YYEE---AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138 (204)
Q Consensus 88 ~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 138 (204)
.... ..--|+++|-.+.-+-..... +...+.... .+.-++++.+..+..
T Consensus 71 ~~~~~~~~~~KviIId~ad~l~~~aqNa-LLK~LEEPp-~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 71 LNYSPELYTRKYVIVHDCERMTQQAANA-FLKALEEPP-EYAVIVLNTRRWHYL 122 (198)
T ss_dssp HTSCCSSSSSEEEEETTGGGBCHHHHHH-THHHHHSCC-TTEEEEEEESCGGGS
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHH-HHHHHHCCC-CCCEEEECCCCHHHC
T ss_conf 9617545898799994731036666647-888773789-885222206995668
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=87.22 E-value=0.22 Score=22.99 Aligned_cols=72 Identities=11% Similarity=0.160 Sum_probs=35.6
Q ss_pred CCEEEEEECCCCCCHHHH-HHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEE-EEEEECCCCCC
Q ss_conf 827999975899111999-99840248989999959998898999999999983599999919-99972899778
Q 028776 67 NSKLVFWDLGGQPGLRSI-WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDLPD 139 (204)
Q Consensus 67 ~~~~~~~D~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~ 139 (204)
...+.++|+|+....... .......++.++.+...+ ..++.........+.......+.++ -++.|+.+...
T Consensus 118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~ 191 (289)
T d2afhe1 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR 191 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHCCCEEECCCCHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHCCHH
T ss_conf 5886861558865788999998740244032036405-7788888999987776520244321440100010003
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=86.36 E-value=0.25 Score=22.64 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=17.7
Q ss_pred CEEEEECCC-CCCHHHHHHHHH
Q ss_conf 189998289-997679999997
Q 028776 18 FHVLILGID-KAGKTTLLEKLK 38 (204)
Q Consensus 18 ~~i~iiG~~-~~GKStli~~l~ 38 (204)
-++.|.|.. ||||||+.-.|.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La 23 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALL 23 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 5199998999942999999999
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=86.25 E-value=0.16 Score=23.63 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 9998289997679999
Q 028776 20 VLILGIDKAGKTTLLE 35 (204)
Q Consensus 20 i~iiG~~~~GKStli~ 35 (204)
-+++|..|+|||||-.
T Consensus 17 alfFGLSGTGKTTLs~ 32 (313)
T d2olra1 17 AVFFGLSGTGKTTLST 32 (313)
T ss_dssp EEEECSTTSSHHHHHC
T ss_pred EEEECCCCCCCCCCEE
T ss_conf 9997047798560232
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=85.85 E-value=0.25 Score=22.63 Aligned_cols=19 Identities=47% Similarity=0.628 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 8999828999767999999
Q 028776 19 HVLILGIDKAGKTTLLEKL 37 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~~l 37 (204)
-+++.|+..+||||+++++
T Consensus 37 ~~iiTGpN~~GKSt~lk~i 55 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQT 55 (224)
T ss_dssp EEEEESCSSSSHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHH
T ss_conf 7999788734532345565
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.73 E-value=0.73 Score=20.31 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=17.7
Q ss_pred CEEEEECCCCCCHHHHHHHH
Q ss_conf 18999828999767999999
Q 028776 18 FHVLILGIDKAGKTTLLEKL 37 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l 37 (204)
--+++.|+..+||||+++++
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i 61 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQT 61 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHH
T ss_conf 39999546731368999987
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=85.62 E-value=0.17 Score=23.48 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHH
Q ss_conf 89998289997679999
Q 028776 19 HVLILGIDKAGKTTLLE 35 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~ 35 (204)
.-+++|..|+|||||-.
T Consensus 16 valffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 16 VAVFFGLSGTGKTTLST 32 (318)
T ss_dssp EEEEEECTTSCHHHHTC
T ss_pred EEEEECCCCCCCCCCCC
T ss_conf 89997368798142210
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.99 E-value=0.2 Score=23.16 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHH
Q ss_conf 89998289997679999
Q 028776 19 HVLILGIDKAGKTTLLE 35 (204)
Q Consensus 19 ~i~iiG~~~~GKStli~ 35 (204)
.-+++|..|+|||||..
T Consensus 16 ~alfFGLSGTGKTTLs~ 32 (323)
T d1ii2a1 16 VTVFFGLSGTGKTTLSA 32 (323)
T ss_dssp EEEEECCTTSSHHHHHC
T ss_pred EEEEECCCCCCCCCCEE
T ss_conf 79997367788120512
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=84.84 E-value=0.5 Score=21.13 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=16.3
Q ss_pred CEEEEECCCCCCHHHHHHHH
Q ss_conf 18999828999767999999
Q 028776 18 FHVLILGIDKAGKTTLLEKL 37 (204)
Q Consensus 18 ~~i~iiG~~~~GKStli~~l 37 (204)
.-|.+.|-.|+||||+.-.+
T Consensus 9 ~~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 9 PYLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 59999799867499999999
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=83.95 E-value=0.35 Score=21.93 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99982899976799999973
Q 028776 20 VLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 20 i~iiG~~~~GKStli~~l~~ 39 (204)
++|+|...||||.+..++..
T Consensus 2 iLVtGGarSGKS~~AE~l~~ 21 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 89978987659999999984
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.09 E-value=0.3 Score=22.30 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=19.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 761189998289997679999997
Q 028776 15 KTEFHVLILGIDKAGKTTLLEKLK 38 (204)
Q Consensus 15 ~~~~~i~iiG~~~~GKStli~~l~ 38 (204)
.+-=|++++|..|+|||+++..+.
T Consensus 66 g~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 66 GRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 678778765688888589999999
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=83.00 E-value=0.87 Score=19.94 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 998644077611899982899976799999973
Q 028776 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 7 ~~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
.+...+......+.++.|.+|||||-+.-+...
T Consensus 66 ~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~ 98 (233)
T d2eyqa3 66 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 98 (233)
T ss_dssp HHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 999998545766708983888772899999999
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=80.93 E-value=1.1 Score=19.49 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=46.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE--EE-EECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 1189998289997679999997301477899999654563201469--98-71827999975899111999998402489
Q 028776 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE-VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 17 ~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
.+. +++|+-.|||||-+-+....+... +....-+.+....++.. +. ..+.......... ............|
T Consensus 8 ~l~-lI~GpMfSGKTteLi~~~~~~~~~-g~~vl~i~~~~D~Ry~~~~i~sh~g~~~~a~~~~~---~~~~~~~~~~~~d 82 (141)
T d1xx6a1 8 WVE-VIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKN---SREILKYFEEDTE 82 (141)
T ss_dssp EEE-EEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-------CEEECTTSCEEECEEESS---STHHHHHCCTTCS
T ss_pred EEE-EEEECCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCEEEECCCCEEEEEEECC---HHHHHHHHCCCCC
T ss_conf 599-999060668999999999985433-77299999642356421114620364477788233---3555554213556
Q ss_pred EEEEEEECCCCCCHHH-HHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 8999995999889899-999999998359999991999972899778
Q 028776 94 AVVFVIDAACPSRFED-SKTALEKVLRNEDLQGAPLLILANKQDLPD 139 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 139 (204)
+ +.+|-.+- |.. .......+.. .++++++.+-..|-..
T Consensus 83 v--I~IDE~QF--f~d~~~~~~~~l~~----~g~~Viv~GLd~Df~~ 121 (141)
T d1xx6a1 83 V--IAIDEVQF--FDDEIVEIVNKIAE----SGRRVICAGLDMDFRG 121 (141)
T ss_dssp E--EEECSGGG--SCTHHHHHHHHHHH----TTCEEEEEECSBCTTS
T ss_pred E--EEEEEHHH--CCCCHHHHHHHHEE----CCCEEEEEEECCCCCC
T ss_conf 9--99950121--36307889875145----7958999996364255
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=80.35 E-value=1 Score=19.59 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=20.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 77611899982899976799999973
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~ 39 (204)
.+..=.|++.|..|+|||.-...++.
T Consensus 83 ~~~~QsIiisGeSGsGKTe~~k~il~ 108 (684)
T d1lkxa_ 83 SQENQCVIISGESGAGKTEASKKIMQ 108 (684)
T ss_dssp HCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 08981899973898998999999999
|