Citrus Sinensis ID: 028783

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MRSTKSPWPTPHRIFSSVCESHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEKAVPAPQPAEGAKKAKK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHccccEEccccccccccccHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHcEEcHccccccHHHHHHHHccHHHHHHHHHcccEEEccccccccHHHHHHHHHHHccccccHHHccccHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccc
Coil and Loop (DISEMBL)
mrstkspwptphrifssvceshitskseipslllpsagQNIRKLVKdgfiirkptkihSRSRARRMKEAKrkgrhsgygkrkgtrearlpTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREERlaqgpgekavpapqpaegakkakk
Flexible Loop (DISEMBL)
mrstkspwptphrIFSSVCESHITSKSeipslllpsaGQNIRKlvkdgfiirkptkihsrsrarrmkeakrkgrhsgygkrkgtrearlptkilwmrrmRVLRRLLRKyreskkidkhmyhdMYMKVKGNVFKNKRVLMESIHkskaekarektlsdqfeakraknkasrerklarreerlaqgpgekavpapqpaegakkakk
Low Complexity Region (SEG)
MRSTKSPWPTPHRIFSSVCESHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIlwmrrmrvlrrllrKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNkasrerklarreerlaQGPGEKAVPAPQPAEGAKKAKK
Disordered region (IsUnstruct)
**************F**VC************LLLPSAGQNIRKLVKDGFIIR************************************LPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL******************************************************************
Disordered Region (DISOPRED)
**********PHRIFSSVCESHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRS********************************LWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAE********************************************************
Disordered Region (DISEMBL)
*********TPHRIFSSVCESHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTK*****************************EARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIH*************************************************************
Disordered Region (DISPRO)
******PWPTPHRIFSSVCESHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRK**HSGY*KRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK***************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSTKSPWPTPHRIFSSVCESHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFExxxxxxxxxxxxxxxxxxxxxAQGPGEKAVPAPQPAEGAKKAKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q9LUQ6	209	60S ribosomal protein L19	yes	no	0.872	0.851	0.813	8e-76
Q9SRX2	214	60S ribosomal protein L19	no	no	0.784	0.747	0.875	8e-68
P49693	208	60S ribosomal protein L19	no	no	0.784	0.769	0.868	2e-67
P36241	203	60S ribosomal protein L19	yes	no	0.681	0.684	0.676	1e-50
P84100	196	60S ribosomal protein L19	no	no	0.833	0.867	0.594	4e-42
Q5RB99	196	60S ribosomal protein L19	yes	no	0.833	0.867	0.594	4e-42
P84099	196	60S ribosomal protein L19	yes	no	0.833	0.867	0.594	4e-42
Q8HXN9	196	60S ribosomal protein L19	N/A	no	0.833	0.867	0.594	4e-42
P84098	196	60S ribosomal protein L19	yes	no	0.833	0.867	0.594	4e-42
D0VWQ5	196	60S ribosomal protein L19	yes	no	0.833	0.867	0.594	4e-42

>sp|Q9LUQ6|RL192_ARATH 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1

 Score =  283 bits (723), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 148/182 (81%), Positives = 156/182 (85%), Gaps = 4/182 (2%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTRE
Sbjct: 27  NESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTKILWMRRMRVLRR L KYRESKKID+HMYHDMYMKVKGNVFKNKRVLMESIHK K
Sbjct: 87  ARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGP--GEKAVP--APQPAEGAKKA 202
           AEKAREKTL+DQFEAKR KNKASRERK ARREERLAQGP  GE   P  APQ  E  KK 
Sbjct: 147 AEKAREKTLADQFEAKRIKNKASRERKFARREERLAQGPGGGETTTPAGAPQQPEVTKKK 206

Query: 203 KK 204
            K
Sbjct: 207 SK 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1

 Score =  256 bits (654), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 140/160 (87%), Positives = 151/160 (94%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTRE
Sbjct: 27  NESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTK+LWMRRMRVLRRLL+KYRE+KKIDKHMYHDMYM+VKGNVFKNKRVLMESIHKSK
Sbjct: 87  ARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPG 186
           AEKAREKTLSDQFEAKRAKNKASRERK ARREERLA+GPG
Sbjct: 147 AEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPG 186

Arabidopsis thaliana (taxid: 3702)

>sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3

 Score =  255 bits (651), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/160 (86%), Positives = 151/160 (94%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTRE
Sbjct: 27  NEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTK+LWMRRMRVLRRLL+KYRE+KKID+HMYHDMYMKVKGNVFKNKRVLMESIHKSK
Sbjct: 87  ARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPG 186
           AEKAREKTLSDQFEAKRAKNKASRERK ARREERLA+GPG
Sbjct: 147 AEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPG 186

Arabidopsis thaliana (taxid: 3702)

>sp|P36241|RL19_DROME 60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2

 Score =  199 bits (505), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/139 (67%), Positives = 114/139 (82%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +EI  +   ++ QNIRKL+KDG II+KP  +HSR R R+  EA+RKGRH G+GKRKGT  
Sbjct: 27  NEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTAN 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+PTK+LWM+R RVLRRLL+KYR+SKKID+H+YHD+YMK KGNVFKNKRVLME IHK K
Sbjct: 87  ARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKK 146

Query: 147 AEKAREKTLSDQFEAKRAK 165
           AEK R K L+DQ EA+R K
Sbjct: 147 AEKQRSKMLADQAEARRQK 165

Drosophila melanogaster (taxid: 7227)

>sp|P84100|RL19_RAT 60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 130/175 (74%), Gaps = 5/175 (2%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   +   ++ Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  
Sbjct: 27  NETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTAN 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK K
Sbjct: 87  ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEKAVPAPQPAEGAKK 201
           A+KAR+K L+DQ EA+R+K K +R+    RREERL Q   E+ +      E  KK
Sbjct: 147 ADKARKKLLADQAEARRSKTKEARK----RREERL-QAKKEEIIKTLSKEEETKK 196

Rattus norvegicus (taxid: 10116)

>sp|Q5RB99|RL19_PONAB 60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 130/175 (74%), Gaps = 5/175 (2%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   +   ++ Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  
Sbjct: 27  NETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTAN 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK K
Sbjct: 87  ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEKAVPAPQPAEGAKK 201
           A+KAR+K L+DQ EA+R+K K +R+    RREERL Q   E+ +      E  KK
Sbjct: 147 ADKARKKLLADQAEARRSKTKEARK----RREERL-QAKKEEIIKTLSKEEETKK 196

Pongo abelii (taxid: 9601)

>sp|P84099|RL19_MOUSE 60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 130/175 (74%), Gaps = 5/175 (2%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   +   ++ Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  
Sbjct: 27  NETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTAN 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK K
Sbjct: 87  ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEKAVPAPQPAEGAKK 201
           A+KAR+K L+DQ EA+R+K K +R+    RREERL Q   E+ +      E  KK
Sbjct: 147 ADKARKKLLADQAEARRSKTKEARK----RREERL-QAKKEEIIKTLSKEEETKK 196

Mus musculus (taxid: 10090)

>sp|Q8HXN9|RL19_MACFA 60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 130/175 (74%), Gaps = 5/175 (2%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   +   ++ Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  
Sbjct: 27  NETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTAN 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK K
Sbjct: 87  ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEKAVPAPQPAEGAKK 201
           A+KAR+K L+DQ EA+R+K K +R+    RREERL Q   E+ +      E  KK
Sbjct: 147 ADKARKKLLADQAEARRSKTKEARK----RREERL-QAKKEEIIKTLSKEEETKK 196

Macaca fascicularis (taxid: 9541)

>sp|P84098|RL19_HUMAN 60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 130/175 (74%), Gaps = 5/175 (2%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   +   ++ Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  
Sbjct: 27  NETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTAN 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK K
Sbjct: 87  ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEKAVPAPQPAEGAKK 201
           A+KAR+K L+DQ EA+R+K K +R+    RREERL Q   E+ +      E  KK
Sbjct: 147 ADKARKKLLADQAEARRSKTKEARK----RREERL-QAKKEEIIKTLSKEEETKK 196

Homo sapiens (taxid: 9606)

>sp|D0VWQ5|RL19_CANFA 60S ribosomal protein L19 OS=Canis familiaris GN=RPL19 PE=1 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 130/175 (74%), Gaps = 5/175 (2%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   +   ++ Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  
Sbjct: 27  NETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTAN 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK K
Sbjct: 87  ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEKAVPAPQPAEGAKK 201
           A+KAR+K L+DQ EA+R+K K +R+    RREERL Q   E+ +      E  KK
Sbjct: 147 ADKARKKLLADQAEARRSKTKEARK----RREERL-QAKKEEIIKTLSKEEETKK 196

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
297830288	209	60S ribosomal protein L19 [Arabidopsis l	0.857	0.837	0.817	2e-75
255551855	206	60S ribosomal protein L19, putative [Ric	0.872	0.864	0.894	3e-75
209967439	206	60s ribosome protein L19 [Vernicia fordi	0.872	0.864	0.883	5e-75
15228314	209	60S ribosomal protein L19-2 [Arabidopsis	0.872	0.851	0.813	4e-74
255564262	208	60S ribosomal protein L19, putative [Ric	0.872	0.855	0.868	6e-73
319428657	177	60S ribosomal protein [Phaseolus vulgari	0.818	0.943	0.918	6e-73
224079704	210	predicted protein [Populus trichocarpa]	0.872	0.847	0.869	8e-73
224134653	209	predicted protein [Populus trichocarpa]	0.872	0.851	0.863	2e-72
319428655	209	60S ribosomal protein [Phaseolus vulgari	0.872	0.851	0.857	2e-72
351721063	212	uncharacterized protein LOC100527501 [Gl	0.872	0.839	0.849	2e-72

>gi|297830288|ref|XP_002883026.1| 60S ribosomal protein L19 [Arabidopsis lyrata subsp. lyrata] gi|297328866|gb|EFH59285.1| 60S ribosomal protein L19 [Arabidopsis lyrata subsp. lyrata]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/181 (81%), Positives = 155/181 (85%), Gaps = 6/181 (3%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTRE
Sbjct: 27  NESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTKILWMRRMRVLRR L KYRESKKID+HMYHDMYMKVKGNVFKNKRVLMESIHK K
Sbjct: 87  ARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGE------KAVPAPQPAEGAK 200
           AEKAREKTLSDQFEAKR KNKASRERK ARREERLAQGPG        A P PQ AE  K
Sbjct: 147 AEKAREKTLSDQFEAKRIKNKASRERKFARREERLAQGPGGGETTTPAAAPVPQQAEVTK 206

Query: 201 K 201
           K
Sbjct: 207 K 207

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551855|ref|XP_002516973.1| 60S ribosomal protein L19, putative [Ricinus communis] gi|223544061|gb|EEF45587.1| 60S ribosomal protein L19, putative [Ricinus communis]

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 161/180 (89%), Positives = 169/180 (93%), Gaps = 2/180 (1%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE
Sbjct: 27  NEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK
Sbjct: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEKA--VPAPQPAEGAKKAKK 204
           AEKAREKTLSDQFEAKRAKNKASRERK+ARREERLAQGPGEKA   PAPQ  EGAKK++K
Sbjct: 147 AEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKAPQAPAPQHTEGAKKSQK 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209967439|gb|ACJ02348.1| 60s ribosome protein L19 [Vernicia fordii]

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 159/180 (88%), Positives = 168/180 (93%), Gaps = 2/180 (1%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E+  + + ++ QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRH+GYGKRKGTRE
Sbjct: 27  NEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHAGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNV+KNKRVLMESIHKSK
Sbjct: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVYKNKRVLMESIHKSK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEK--AVPAPQPAEGAKKAKK 204
           AEKAREKTLSDQFEAKRAKNKASRERK ARREERLAQGPGEK    PAPQ  EGAKK+KK
Sbjct: 147 AEKAREKTLSDQFEAKRAKNKASRERKFARREERLAQGPGEKPQQAPAPQQIEGAKKSKK 206

Source: Vernicia fordii

Species: Vernicia fordii

Genus: Vernicia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228314|ref|NP_188300.1| 60S ribosomal protein L19-2 [Arabidopsis thaliana] gi|17865565|sp|Q9LUQ6.1|RL192_ARATH RecName: Full=60S ribosomal protein L19-2 gi|11994633|dbj|BAB02770.1| 60S ribosome protein L19-like [Arabidopsis thaliana] gi|15010618|gb|AAK73968.1| AT3g16780/MGL6_23 [Arabidopsis thaliana] gi|19699260|gb|AAL90996.1| AT3g16780/MGL6_23 [Arabidopsis thaliana] gi|332642343|gb|AEE75864.1| 60S ribosomal protein L19-2 [Arabidopsis thaliana]

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 148/182 (81%), Positives = 156/182 (85%), Gaps = 4/182 (2%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTRE
Sbjct: 27  NESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTKILWMRRMRVLRR L KYRESKKID+HMYHDMYMKVKGNVFKNKRVLMESIHK K
Sbjct: 87  ARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGP--GEKAVP--APQPAEGAKKA 202
           AEKAREKTL+DQFEAKR KNKASRERK ARREERLAQGP  GE   P  APQ  E  KK 
Sbjct: 147 AEKAREKTLADQFEAKRIKNKASRERKFARREERLAQGPGGGETTTPAGAPQQPEVTKKK 206

Query: 203 KK 204
            K
Sbjct: 207 SK 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564262|ref|XP_002523128.1| 60S ribosomal protein L19, putative [Ricinus communis] gi|223537690|gb|EEF39313.1| 60S ribosomal protein L19, putative [Ricinus communis]

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 158/182 (86%), Positives = 166/182 (91%), Gaps = 4/182 (2%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE
Sbjct: 27  NEANEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK
Sbjct: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEK----AVPAPQPAEGAKKA 202
           AEKAREKTLSDQFEAKRAKNKASRERK ARREERLAQGPG +    A PA Q  EG+KK+
Sbjct: 147 AEKAREKTLSDQFEAKRAKNKASRERKFARREERLAQGPGAEKPIAAPPASQSTEGSKKS 206

Query: 203 KK 204
           KK
Sbjct: 207 KK 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319428657|gb|ADV56681.1| 60S ribosomal protein [Phaseolus vulgaris]

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 158/172 (91%), Positives = 162/172 (94%), Gaps = 5/172 (2%)

Query: 38  GQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMR 97
           GQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMR
Sbjct: 6   GQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMR 65

Query: 98  RMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSD 157
           RMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSD
Sbjct: 66  RMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSD 125

Query: 158 QFEAKRAKNKASRERKLARREERLAQGPGEK-----AVPAPQPAEGAKKAKK 204
           QFEAKRAKNKASRERK+ARREERLAQGP EK     + PAPQ A+  KK+KK
Sbjct: 126 QFEAKRAKNKASRERKIARREERLAQGPVEKVSTAPSAPAPQSAQPPKKSKK 177

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079704|ref|XP_002305919.1| predicted protein [Populus trichocarpa] gi|222848883|gb|EEE86430.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 160/184 (86%), Positives = 167/184 (90%), Gaps = 6/184 (3%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE
Sbjct: 27  NEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTK+LWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK
Sbjct: 87  ARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPG-EKAVPAP-----QPAEGAK 200
           AEKAREKTLSDQFEAKRAKNKASRERK ARREERLA GPG EK V AP     QPAEG K
Sbjct: 147 AEKAREKTLSDQFEAKRAKNKASRERKFARREERLAMGPGAEKPVAAPPAAVSQPAEGTK 206

Query: 201 KAKK 204
           K+KK
Sbjct: 207 KSKK 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134653|ref|XP_002327457.1| predicted protein [Populus trichocarpa] gi|118484109|gb|ABK93939.1| unknown [Populus trichocarpa] gi|222836011|gb|EEE74432.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/183 (86%), Positives = 166/183 (90%), Gaps = 5/183 (2%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRARRM EAKRKGRHSGYGKRKGTRE
Sbjct: 27  NEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMNEAKRKGRHSGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTK+LWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK
Sbjct: 87  ARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPG-EKAVPAP----QPAEGAKK 201
           AEKAREKTL+DQFEAKRAKNKASRERK ARREERLA GPG EKAV AP    QP EG KK
Sbjct: 147 AEKAREKTLADQFEAKRAKNKASRERKFARREERLAMGPGAEKAVAAPPAASQPTEGTKK 206

Query: 202 AKK 204
           +KK
Sbjct: 207 SKK 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319428655|gb|ADV56679.1| 60S ribosomal protein [Phaseolus vulgaris] gi|319428672|gb|ADV56695.1| 60S ribosomal protein [Phaseolus vulgaris]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/183 (85%), Positives = 166/183 (90%), Gaps = 5/183 (2%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE
Sbjct: 27  NESNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK
Sbjct: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEK-----AVPAPQPAEGAKK 201
           AEKAREKTLSDQFEAKRAKNKASRERK+ARREERLAQGP EK     + PAPQ  +  KK
Sbjct: 147 AEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPVEKVSTAPSAPAPQSTQAPKK 206

Query: 202 AKK 204
           +KK
Sbjct: 207 SKK 209

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721063|ref|NP_001236941.1| uncharacterized protein LOC100527501 [Glycine max] gi|255632494|gb|ACU16597.1| unknown [Glycine max]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/186 (84%), Positives = 167/186 (89%), Gaps = 8/186 (4%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E+  + + ++ QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE
Sbjct: 27  NEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK
Sbjct: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEKA--------VPAPQPAEG 198
           AEKAREKTLSDQFEAKRAKNKASRERK+ARREERLAQGPGEK           A QPA+ 
Sbjct: 147 AEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKVSAAPSATAATASQPAQA 206

Query: 199 AKKAKK 204
            KK+KK
Sbjct: 207 PKKSKK 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2024695	214	emb2386 "embryo defective 2386	0.862	0.822	0.664	6.8e-56
TAIR|locus:2089383	209	AT3G16780 [Arabidopsis thalian	0.872	0.851	0.664	8.6e-56
TAIR|locus:2137854	208	AT4G02230 [Arabidopsis thalian	0.872	0.855	0.664	1.1e-55
FB|FBgn0002607	203	RpL19 "Ribosomal protein L19"	0.681	0.684	0.597	1.6e-40
UNIPROTKB|F1NXF4	194	RPL19 "Ribosomal protein L19"	0.622	0.654	0.614	1.3e-38
UNIPROTKB|Q5ZKK8	196	RPL19 "Ribosomal protein L19"	0.622	0.647	0.614	1.3e-38
UNIPROTKB|Q6EE39	174	RPL19 "Ribosomal protein L19"	0.622	0.729	0.614	1.3e-38
UNIPROTKB|F1N2W8	158	RPL19 "60S ribosomal protein L	0.622	0.803	0.614	1.3e-38
UNIPROTKB|Q3T0W9	196	RPL19 "60S ribosomal protein L	0.622	0.647	0.614	1.3e-38
UNIPROTKB|D0VWQ5	196	RPL19 "60S ribosomal protein L	0.622	0.647	0.614	1.3e-38

TAIR|locus:2024695 emb2386 "embryo defective 2386" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 117/176 (66%), Positives = 127/176 (72%)

Query:    27 SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
             +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTRE
Sbjct:    27 NESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTRE 86

Query:    87 ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
             ARLPTK+              KYRE+KKIDKHMYHDMYM+VKGNVFKNKRVLMESIHKSK
Sbjct:    87 ARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSK 146

Query:   147 AEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXXQGPGEKAVPAPQPAEGAKKA 202
             AEKAREKTLSDQFEAKRAKN                +GPG    P   PA  A  A
Sbjct:   147 AEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDVAPVAAPAPAATPA 202

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2089383 AT3G16780 [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 121/182 (66%), Positives = 129/182 (70%)

Query:    27 SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
             +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTRE
Sbjct:    27 NESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTRE 86

Query:    87 ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
             ARLPTKI              KYRESKKID+HMYHDMYMKVKGNVFKNKRVLMESIHK K
Sbjct:    87 ARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMK 146

Query:   147 AEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXXQGPG--EKAVPA--PQPAEGAKKA 202
             AEKAREKTL+DQFEAKR KN                QGPG  E   PA  PQ  E  KK 
Sbjct:   147 AEKAREKTLADQFEAKRIKNKASRERKFARREERLAQGPGGGETTTPAGAPQQPEVTKKK 206

Query:   203 KK 204
              K
Sbjct:   207 SK 208

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2137854 AT4G02230 [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 121/182 (66%), Positives = 133/182 (73%)

Query:    27 SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
             +E   + + ++ QNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTRE
Sbjct:    27 NEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTRE 86

Query:    87 ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
             ARLPTK+              KYRE+KKID+HMYHDMYMKVKGNVFKNKRVLMESIHKSK
Sbjct:    87 ARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146

Query:   147 AEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXXQGPG---EKAVPAPQPAE-GAKKA 202
             AEKAREKTLSDQFEAKRAKN                +GPG     A P  Q AE  AKK+
Sbjct:   147 AEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDIPAAAPPAQTAEVPAKKS 206

Query:   203 KK 204
             KK
Sbjct:   207 KK 208

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

FB|FBgn0002607 RpL19 "Ribosomal protein L19" [Drosophila melanogaster (taxid:7227)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 83/139 (59%), Positives = 101/139 (72%)

Query:    27 SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
             +EI  +   ++ QNIRKL+KDG II+KP  +HSR R R+  EA+RKGRH G+GKRKGT  
Sbjct:    27 NEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTAN 86

Query:    87 ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
             AR+PTK+              KYR+SKKID+H+YHD+YMK KGNVFKNKRVLME IHK K
Sbjct:    87 ARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKK 146

Query:   147 AEKAREKTLSDQFEAKRAK 165
             AEK R K L+DQ EA+R K
Sbjct:   147 AEKQRSKMLADQAEARRQK 165

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

UNIPROTKB|F1NXF4 RPL19 "Ribosomal protein L19" [Gallus gallus (taxid:9031)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 78/127 (61%), Positives = 95/127 (74%)

Query:    39 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
             Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+     
Sbjct:    37 QQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRR 96

Query:    99 XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
                      +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ
Sbjct:    97 MRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 156

Query:   159 FEAKRAK 165
              EA+R+K
Sbjct:   157 AEARRSK 163

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|Q5ZKK8 RPL19 "Ribosomal protein L19" [Gallus gallus (taxid:9031)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 78/127 (61%), Positives = 95/127 (74%)

Query:    39 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
             Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+     
Sbjct:    39 QQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRR 98

Query:    99 XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
                      +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ
Sbjct:    99 MRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158

Query:   159 FEAKRAK 165
              EA+R+K
Sbjct:   159 AEARRSK 165

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|Q6EE39 RPL19 "Ribosomal protein L19" [Gallus gallus (taxid:9031)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 78/127 (61%), Positives = 95/127 (74%)

Query:    39 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
             Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+     
Sbjct:    31 QQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRR 90

Query:    99 XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
                      +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ
Sbjct:    91 MRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 150

Query:   159 FEAKRAK 165
              EA+R+K
Sbjct:   151 AEARRSK 157

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|F1N2W8 RPL19 "60S ribosomal protein L19" [Bos taurus (taxid:9913)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 78/127 (61%), Positives = 95/127 (74%)

Query:    39 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
             Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+     
Sbjct:     1 QQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRR 60

Query:    99 XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
                      +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ
Sbjct:    61 MRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 120

Query:   159 FEAKRAK 165
              EA+R+K
Sbjct:   121 AEARRSK 127

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q3T0W9 RPL19 "60S ribosomal protein L19" [Bos taurus (taxid:9913)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 78/127 (61%), Positives = 95/127 (74%)

Query:    39 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
             Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+     
Sbjct:    39 QQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRR 98

Query:    99 XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
                      +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ
Sbjct:    99 MRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158

Query:   159 FEAKRAK 165
              EA+R+K
Sbjct:   159 AEARRSK 165

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|D0VWQ5 RPL19 "60S ribosomal protein L19" [Canis lupus familiaris (taxid:9615)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 78/127 (61%), Positives = 95/127 (74%)

Query:    39 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
             Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+     
Sbjct:    39 QQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRR 98

Query:    99 XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
                      +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ
Sbjct:    99 MRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158

Query:   159 FEAKRAK 165
              EA+R+K
Sbjct:   159 AEARRSK 165

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8HXN9	RL19_MACFA	No assigned EC number	0.5942	0.8333	0.8673	N/A	no
P05734	RL19A_SCHPO	No assigned EC number	0.5909	0.6470	0.6839	yes	no
P0CX83	RL19B_YEAST	No assigned EC number	0.55	0.6862	0.7407	yes	no
P0CX82	RL19A_YEAST	No assigned EC number	0.55	0.6862	0.7407	yes	no
O02639	RL19_CAEEL	No assigned EC number	0.5779	0.7352	0.7575	yes	no
Q6P5L3	RL19_DANRE	No assigned EC number	0.6330	0.6813	0.7091	yes	no
P14329	RL19_DICDI	No assigned EC number	0.6	0.7352	0.8064	yes	no
Q7ZYS1	RL19_XENLA	No assigned EC number	0.5942	0.8382	0.8680	N/A	no
D0VWQ5	RL19_CANFA	No assigned EC number	0.5942	0.8333	0.8673	yes	no
P36241	RL19_DROME	No assigned EC number	0.6762	0.6813	0.6847	yes	no
Q5RB99	RL19_PONAB	No assigned EC number	0.5942	0.8333	0.8673	yes	no
P84099	RL19_MOUSE	No assigned EC number	0.5942	0.8333	0.8673	yes	no
P84098	RL19_HUMAN	No assigned EC number	0.5942	0.8333	0.8673	yes	no
Q9LUQ6	RL192_ARATH	No assigned EC number	0.8131	0.8725	0.8516	yes	no
O42699	RL19B_SCHPO	No assigned EC number	0.6060	0.6470	0.6839	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.3__1844__AT3G16780.1	annotation not avaliable (209 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.7__2491__AT4G18100.1	annotation not avaliable (133 aa)	•			•	•	•	•		0.929
	fgenesh1_pg.C_scaffold_8000144	annotation not avaliable (133 aa)	•			•	•	•	•		0.927
	scaffold_603399.1	annotation not avaliable (194 aa)	•			•	•	•	•		0.905
	fgenesh2_kg.1__3446__AT1G33140.1	annotation not avaliable (194 aa)	•			•	•	•	•		0.901
	fgenesh2_kg.8__2660__AT5G67510.1	annotation not avaliable (146 aa)	•			•	•	•	•		0.897
	scaffold_502012.1	annotation not avaliable (146 aa)	•			•	•	•	•		0.883
	fgenesh2_kg.2__971__AT1G67430.1	annotation not avaliable (175 aa)	•			•	•	•			0.855
	scaffold_304047.1	annotation not avaliable (261 aa)	•			•		•	•		0.852
	fgenesh2_kg.1__2897__AT1G27400.1	annotation not avaliable (176 aa)	•			•	•	•			0.852
	fgenesh2_kg.8__1775__AT5G58420.1	annotation not avaliable (262 aa)	•			•		•	•		0.847

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
cd01417	164	cd01417, Ribosomal_L19e_E, Ribosomal protein L19e,	9e-66
PTZ00097	175	PTZ00097, PTZ00097, 60S ribosomal protein L19; Pro	1e-62
cd00481	145	cd00481, Ribosomal_L19e, Ribosomal protein L19e	5e-50
pfam01280	148	pfam01280, Ribosomal_L19e, Ribosomal protein L19e	8e-50
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	2e-35
COG2147	150	COG2147, RPL19A, Ribosomal protein L19E [Translati	1e-32
PRK08570	150	PRK08570, rpl19e, 50S ribosomal protein L19e; Revi	1e-25
cd01418	145	cd01418, Ribosomal_L19e_A, Ribosomal protein L19e,	2e-22

>gnl|CDD|238705 cd01417, Ribosomal_L19e_E, Ribosomal protein L19e, eukaryotic

 Score =  199 bits (508), Expect = 9e-66
 Identities = 103/140 (73%), Positives = 122/140 (87%)

Query: 28  EIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREA 87
           EI  +   ++ Q+IRKL+KDG II+KP K+HSRSRAR+  EAKRKGRH GYGKRKGT  A
Sbjct: 25  EISEISNANSRQSIRKLIKDGLIIKKPVKVHSRSRARKRHEAKRKGRHMGYGKRKGTANA 84

Query: 88  RLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKA 147
           R+P+K+LWMRR RVLRRLL+KYRESKKIDKH+YH++Y+K KGNVFKNKRVLME IHK+KA
Sbjct: 85  RMPSKVLWMRRQRVLRRLLKKYRESKKIDKHLYHELYLKAKGNVFKNKRVLMEHIHKAKA 144

Query: 148 EKAREKTLSDQFEAKRAKNK 167
           EKAREK L+DQ EA+RAKNK
Sbjct: 145 EKAREKELADQAEARRAKNK 164

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits. Length = 164

>gnl|CDD|185443 PTZ00097, PTZ00097, 60S ribosomal protein L19; Provisional

 Score =  191 bits (488), Expect = 1e-62
 Identities = 96/138 (69%), Positives = 117/138 (84%)

Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRR 98
            +IRKL+KDG IIRKP  +HSR+RARR  EAKRKGRH+G GKR+GTREAR+PTK+LWMRR
Sbjct: 37  FSIRKLIKDGLIIRKPVAVHSRARARRFHEAKRKGRHTGIGKRRGTREARMPTKVLWMRR 96

Query: 99  MRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
            RVLRRLLRKYR +KKID+HMYH+ Y+K KGN FKNKRVL+E+IHK+K EK +EK + DQ
Sbjct: 97  QRVLRRLLRKYRAAKKIDRHMYHEFYLKSKGNQFKNKRVLIEAIHKTKNEKVKEKKIQDQ 156

Query: 159 FEAKRAKNKASRERKLAR 176
            EA+RAK KA R ++ A+
Sbjct: 157 LEARRAKAKALRNKRKAK 174

Length = 175

>gnl|CDD|238268 cd00481, Ribosomal_L19e, Ribosomal protein L19e

 Score =  158 bits (403), Expect = 5e-50
 Identities = 73/110 (66%), Positives = 90/110 (81%)

Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRR 98
           ++IRKL+KDG II+KP K HSR RAR+  EA+RKGRH G G RKGT+ AR+P+K LW+RR
Sbjct: 36  EDIRKLIKDGLIIKKPKKGHSRGRARKRHEARRKGRHRGPGSRKGTKGARMPSKELWIRR 95

Query: 99  MRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAE 148
           +R LRRLL+K R+S KIDKH Y ++Y+K KGNVFKNKR L E IHK+KAE
Sbjct: 96  IRALRRLLKKLRDSGKIDKHTYRELYLKAKGNVFKNKRHLKEYIHKAKAE 145

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits. Length = 145

>gnl|CDD|201707 pfam01280, Ribosomal_L19e, Ribosomal protein L19e

 Score =  158 bits (402), Expect = 8e-50
 Identities = 71/111 (63%), Positives = 87/111 (78%)

Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRR 98
           ++IRKL+KDG II+KP K HSR RAR+ KE +RKGRH G G RKGT+ AR+P K LW+RR
Sbjct: 38  EDIRKLIKDGLIIKKPKKGHSRGRARKRKEKRRKGRHRGPGSRKGTKGARMPKKELWIRR 97

Query: 99  MRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK 149
           +R LRRLLR+ R++ KIDKH Y ++Y K KG VFKNK  L E IHK+KAEK
Sbjct: 98  IRALRRLLRELRDAGKIDKHTYRELYRKAKGGVFKNKAHLKEYIHKAKAEK 148

Length = 148

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score =  127 bits (320), Expect = 2e-35
 Identities = 96/171 (56%), Positives = 121/171 (70%), Gaps = 7/171 (4%)

Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRR 98
           +++RKL+KDG IIRKP K+HSRSR R MKEAK  GRH G G+R+GTREAR+P+K LWMRR
Sbjct: 39  KSVRKLIKDGLIIRKPVKVHSRSRWRHMKEAKSMGRHEGAGRREGTREARMPSKELWMRR 98

Query: 99  MRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
           +R+LRRLLRKYRE KKID+H+Y ++Y+K KGNVF+NKR LME IHK K EK +E+ L++Q
Sbjct: 99  LRILRRLLRKYREEKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQ 158

Query: 159 FEAKRAKNKASRE-------RKLARREERLAQGPGEKAVPAPQPAEGAKKA 202
             AKR K++  R        RK  +  ER  +     A  A Q A   K A
Sbjct: 159 LAAKRLKDEQHRHKARKQELRKREKDRERARREDAAAAAAAKQKAAAKKAA 209

Length = 357

>gnl|CDD|225058 COG2147, RPL19A, Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]

 Score =  114 bits (288), Expect = 1e-32
 Identities = 55/111 (49%), Positives = 71/111 (63%)

Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRR 98
           ++IR L+KDG I  KP K  SR RAR+    K+KGR  G G RKGT+ AR+P+K  W++R
Sbjct: 39  EDIRALIKDGVIKAKPKKGISRGRARKRHAQKKKGRRRGPGSRKGTKGARMPSKERWIKR 98

Query: 99  MRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK 149
           +R LRR LRK R+  KIDKH Y  +Y   KG  FK+K  L   I ++K  K
Sbjct: 99  IRALRRELRKLRDDGKIDKHTYRKLYRMAKGGAFKSKSHLKSYIEEAKLLK 149

Length = 150

>gnl|CDD|236295 PRK08570, rpl19e, 50S ribosomal protein L19e; Reviewed

 Score = 96.9 bits (242), Expect = 1e-25
 Identities = 46/100 (46%), Positives = 62/100 (62%)

Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRR 98
           ++IR+L+K+G I  KP K  SR RAR   E ++KGR  G G RKG + AR P K  W+ R
Sbjct: 39  EDIRELIKEGVIKAKPKKGISRGRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINR 98

Query: 99  MRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL 138
           +R LRR LR+ R+  KID+  Y  +Y K KG  F++   L
Sbjct: 99  IRALRRYLRELRDEGKIDRKTYRKLYRKAKGGEFRSVSHL 138

Length = 150

>gnl|CDD|238706 cd01418, Ribosomal_L19e_A, Ribosomal protein L19e, archaeal

 Score = 88.2 bits (219), Expect = 2e-22
 Identities = 42/97 (43%), Positives = 58/97 (59%)

Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRR 98
            +IR L+K+G I  KP K  SR R +   E ++KGR  G G RKG + AR P K  W++ 
Sbjct: 36  DDIRALIKEGVIKAKPKKGISRGRLKERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKT 95

Query: 99  MRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNK 135
           +R LRR L++ R+  KIDK  Y  +Y K KG  F++ 
Sbjct: 96  IRALRRYLKELRDKGKIDKKTYRKLYRKAKGGSFRSL 132

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG1696	193	consensus 60s ribosomal protein L19 [Translation,	100.0
PTZ00097	175	60S ribosomal protein L19; Provisional	100.0
cd01417	164	Ribosomal_L19e_E Ribosomal protein L19e, eukaryoti	100.0
PTZ00436	357	60S ribosomal protein L19-like protein; Provisiona	100.0
PF01280	148	Ribosomal_L19e: Ribosomal protein L19e; InterPro:	100.0
cd00481	145	Ribosomal_L19e Ribosomal protein L19e. L19e is fou	100.0
cd01418	145	Ribosomal_L19e_A Ribosomal protein L19e, archaeal.	100.0
PRK08570	150	rpl19e 50S ribosomal protein L19e; Reviewed	100.0
COG2147	150	RPL19A Ribosomal protein L19E [Translation, riboso	100.0

>KOG1696 consensus 60s ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.6e-79  Score=515.13  Aligned_cols=179  Identities=64%  Similarity=0.954  Sum_probs=172.0

Q ss_pred             CCCCCCccccccc--ccc--eeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCc
Q 028783            6 SPWPTPHRIFSSV--CES--HITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR   81 (204)
Q Consensus         6 ~~~~~q~rla~~V--~gk--vWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkR   81 (204)
                      |--++|+||||||  ||+  |||||||++||++|||||+|++||+||+||.+|+++|||+||+++.+++++|||+|||+|
T Consensus         2 s~lrlqKRLAssVl~cGKkKvWlDpNE~~eI~~ansRq~irkLikdg~iI~Kp~~vhsr~r~rk~~~akrkgrH~G~GKR   81 (193)
T KOG1696|consen    2 SNLRLQKRLAASVLKCGKKKVWLDPNEISEISGANSRQNIRKLIKDGLIIRKPVTVHSRSRCRKRLEAKRKGRHMGYGKR   81 (193)
T ss_pred             chHHHHHHHHHHHHHhcccceeeCccHHHHhcccchHHHHHHHHhCCeEeecchhhhHHHHHHHHHHHHHhccccCcccc
Confidence            3457899999999  994  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHH
Q 028783           82 KGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEA  161 (204)
Q Consensus        82 KGtk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeA  161 (204)
                      +||+|||||+|++||+||||||++|++|||+|+||+||||+||+++|||+|||+++|||||||+|||++++|+|+|||||
T Consensus        82 kGTanArmP~k~~Wmrr~RvlRrlL~kyR~skKIdkh~YH~lY~k~KGnvFKnK~~LmE~I~K~KAe~~r~K~LadQaeA  161 (193)
T KOG1696|consen   82 KGTANARMPSKVLWMRRMRVLRRLLKKYRDSKKIDKHMYHDLYLKVKGNVFKNKRVLMEHIHKSKAEKAREKLLADQAEA  161 (193)
T ss_pred             cccccccCchhHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHHHHhcC
Q 028783          162 KRAKNKASRERKLARREERLAQG  184 (204)
Q Consensus       162 rr~k~k~~r~r~~~r~~~~~~~~  184 (204)
                      +|.++++++++++++.+++.+..
T Consensus       162 rr~k~k~ar~rreer~~~k~~~~  184 (193)
T KOG1696|consen  162 RRLKNKAARKRREERLAAKPQEL  184 (193)
T ss_pred             HHhhhHHHhhhHHHHHhhchhhh
Confidence            99999999999888777665443

>PTZ00097 60S ribosomal protein L19; Provisional

Probab=100.00  E-value=5.4e-74  Score=480.58  Aligned_cols=168  Identities=61%  Similarity=0.971  Sum_probs=164.3

Q ss_pred             CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783            8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (204)
Q Consensus         8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG   83 (204)
                      ..+|+||||+|  ||  +||||||+++||++||||+|||+||+||+|+++|++||||+|++++++++++|||+|||+|+|
T Consensus         2 l~~QKRLAA~vL~cG~~rVWiDP~~~~eI~~A~tR~dIR~LIkdG~I~~kp~kg~SR~R~r~~~~~k~kGR~~G~G~RKG   81 (175)
T PTZ00097          2 LRLQKRLAASVLKCGKNRVWLDPNEASEISLANSRFSIRKLIKDGLIIRKPVAVHSRARARRFHEAKRKGRHTGIGKRRG   81 (175)
T ss_pred             chHHHHHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCCCcC
Confidence            35899999999  88  499999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHHH
Q 028783           84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR  163 (204)
Q Consensus        84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeArr  163 (204)
                      |+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.|+|++++++|+||+||++
T Consensus        82 tk~AR~p~K~~W~~riR~lRr~Lk~~R~~~kIdk~~Yr~lY~kaKGn~Fknk~~L~~~I~~~kae~~r~k~l~~q~~a~r  161 (175)
T PTZ00097         82 TREARMPTKVLWMRRQRVLRRLLRKYRAAKKIDRHMYHEFYLKSKGNQFKNKRVLIEAIHKTKNEKVKEKKIQDQLEARR  161 (175)
T ss_pred             cccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHH
Q 028783          164 AKNKASRERKLA  175 (204)
Q Consensus       164 ~k~k~~r~r~~~  175 (204)
                      .+++++++++.+
T Consensus       162 ~k~~~~~~~r~~  173 (175)
T PTZ00097        162 AKAKALRNKRKA  173 (175)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998664

>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic

Probab=100.00  E-value=5e-73  Score=470.91  Aligned_cols=159  Identities=67%  Similarity=1.036  Sum_probs=156.1

Q ss_pred             CCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCcccc
Q 028783            9 PTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGT   84 (204)
Q Consensus         9 ~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKGt   84 (204)
                      .+|+||||+|  ||  +||||||+++||++||||+|||+||+||+|+++|++||||+|++++++++++|||+|+|+|+||
T Consensus         2 ~~QKRLAA~vL~cG~~rVW~DP~~~~eI~~A~tR~dIR~LIkdG~I~~kp~kg~SR~R~r~~~~~k~kGR~~G~G~RkGt   81 (164)
T cd01417           2 RLQKRLAASVLKCGKRKVWLDPNEISEISNANSRQSIRKLIKDGLIIKKPVKVHSRSRARKRHEAKRKGRHMGYGKRKGT   81 (164)
T ss_pred             cHHHHHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCCCcCCHHHHHHHHHHHHhCCCCCCCCCcCc
Confidence            5799999999  88  4999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHHHh
Q 028783           85 REARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA  164 (204)
Q Consensus        85 k~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeArr~  164 (204)
                      +|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.|+|+++++.|+||+||+++
T Consensus        82 ~~AR~p~K~~W~~riR~lRr~Lk~~R~~~kIdk~~Yr~lY~kaKGn~Fknk~~L~~~I~~~kae~~r~k~l~~q~~a~r~  161 (164)
T cd01417          82 ANARMPSKVLWMRRQRVLRRLLKKYRESKKIDKHLYHELYLKAKGNVFKNKRVLMEHIHKAKAEKAREKELADQAEARRA  161 (164)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhH
Q 028783          165 KNK  167 (204)
Q Consensus       165 k~k  167 (204)
                      +++
T Consensus       162 ~~~  164 (164)
T cd01417         162 KNK  164 (164)
T ss_pred             ccC
Confidence            864

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.

>PTZ00436 60S ribosomal protein L19-like protein; Provisional

Probab=100.00  E-value=6.1e-70  Score=488.71  Aligned_cols=164  Identities=54%  Similarity=0.903  Sum_probs=159.7

Q ss_pred             CCCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCcc
Q 028783            7 PWPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK   82 (204)
Q Consensus         7 ~~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRK   82 (204)
                      -..+|+|||++|  ||  +|||||||++||++||||+|||+||+||+|+++|++||||+|+|++++++++|||+|+|||+
T Consensus         3 dLklQKRLAAsVL~cGk~RVWiDPnel~eIa~AiTReDIRkLIkdGlIikKp~KGhSRgRaRkr~eaKrKGRhrG~GsRK   82 (357)
T PTZ00436          3 SLKLQARLAADILRCGRHRVWLDPNEASEISNANSRKSVRKLIKDGLIIRKPVKVHSRSRWRHMKEAKSMGRHEGAGRRE   82 (357)
T ss_pred             chHHHHHHHHHHhCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCcccCChHHHHHHHHHHHhCcCCCCCCCc
Confidence            457899999999  88  49999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHH
Q 028783           83 GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAK  162 (204)
Q Consensus        83 Gtk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeAr  162 (204)
                      ||+|||||+|++||+|||+|||+|++|||+|+||+|+||+||+++|||+|+|++||++|||+.|+|+.++++|.||+||+
T Consensus        83 GTk~AR~P~K~~WIrRIRaLRRlLKklRd~gKIDkh~YR~LYrKAKGn~FKNK~~L~e~I~k~KaE~~R~K~L~dQ~eAr  162 (357)
T PTZ00436         83 GTREARMPSKELWMRRLRILRRLLRKYREEKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAK  162 (357)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHH
Q 028783          163 RAKNKASR  170 (204)
Q Consensus       163 r~k~k~~r  170 (204)
                      |.++++.|
T Consensus       163 R~k~~~~r  170 (357)
T PTZ00436        163 RLKDEQHR  170 (357)
T ss_pred             HHHhhhhh
Confidence            99987654

>PF01280 Ribosomal_L19e: Ribosomal protein L19e; InterPro: IPR000196 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=9.7e-68  Score=433.46  Aligned_cols=141  Identities=58%  Similarity=0.915  Sum_probs=123.6

Q ss_pred             CCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCcccc
Q 028783            9 PTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGT   84 (204)
Q Consensus         9 ~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKGt   84 (204)
                      .+|+||||+|  ||  +|||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+|+|+||
T Consensus         4 ~~QKRLAa~vL~~G~~rVw~DP~~~~eI~~A~tR~~IR~LIk~G~I~~k~~k~~Sr~R~r~~~~~r~kGr~~G~G~RkGt   83 (148)
T PF01280_consen    4 KLQKRLAASVLGCGKNRVWIDPNELEEIANAITREDIRKLIKDGLIIKKPVKGHSRGRARKRKEARRKGRHRGPGKRKGT   83 (148)
T ss_dssp             HHHHHHHHHHHTS-GGGEEE-STTHHHHHH--SHHHHHHHHHTTSEEE---S--STHHHHHHHHHHHCTTS-SSTTS-S-
T ss_pred             HHHHHHHHHHHCCCCCcEEeCHHHHHHHHhhhhHHHHHHHHHCCCeEeCCCCCCchHHHHHHHHHHhhcccccccccccc
Confidence            5799999999  88  4999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHH
Q 028783           85 REARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK  149 (204)
Q Consensus        85 k~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek  149 (204)
                      +|||+|+|+.||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||+.|+|+
T Consensus        84 ~~AR~~~K~~W~~riR~lRr~Lk~~r~~~kID~~~Yr~lY~kaKGn~Fkn~~~L~~~i~~~k~e~  148 (148)
T PF01280_consen   84 KNARMPEKELWMRRIRALRRLLKRLRDSGKIDRHMYRSLYRKAKGNVFKNKRHLMEHIHKLKAEK  148 (148)
T ss_dssp             HHHHS-HHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHCH
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCcccCHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents structural domain of the ribosomal protein L19 from eukaryotes, as well as L19e from archaea []. L19/L19e is absent in bacteria. L19/L19e is part of the large ribosomal subunit, whose structure has been determined in a number of eukaryotic and archaeal species []. L19/L19e is a multi-helical protein consisting of two different 3-helical domains connected by a long, partly helical linker.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_T 3O58_S 3O5H_S 3IZS_T 2WWA_J 1S1I_P 2WW9_J 2ZKR_7 4A1A_O 4A1C_O ....

>cd00481 Ribosomal_L19e Ribosomal protein L19e

Probab=100.00  E-value=5e-67  Score=428.04  Aligned_cols=140  Identities=54%  Similarity=0.893  Sum_probs=137.0

Q ss_pred             CCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCcccc
Q 028783            9 PTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGT   84 (204)
Q Consensus         9 ~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKGt   84 (204)
                      .+|+||||+|  ||  .||||||+++||++||||+|||+||+||+|+++|++||||+|++++++++++|||+|+|+|+||
T Consensus         2 ~~QkRLAA~vL~~G~~rVW~DP~~~~eI~~A~tR~dIR~LIkdG~I~~kp~kg~Sr~R~r~~~~~r~kGr~~G~G~RkGt   81 (145)
T cd00481           2 RLQKRLAADILKCGKNRVWIDPNELEEIANANTREDIRKLIKDGLIIKKPKKGHSRGRARKRHEARRKGRHRGPGSRKGT   81 (145)
T ss_pred             cHHHHHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCcCCCCCCccCc
Confidence            5799999999  88  4999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhH
Q 028783           85 REARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAE  148 (204)
Q Consensus        85 k~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kae  148 (204)
                      ++||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|
T Consensus        82 ~~AR~p~K~~W~~riR~lRr~Lk~~R~~~kIdk~~Yr~lY~kaKG~~Fknk~~L~~~i~~~~~~  145 (145)
T cd00481          82 KGARMPSKELWIRRIRALRRLLKKLRDSGKIDKHTYRELYLKAKGNVFKNKRHLKEYIHKAKAE  145 (145)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999999999998764

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.

>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal

Probab=100.00  E-value=1.1e-64  Score=414.22  Aligned_cols=136  Identities=32%  Similarity=0.569  Sum_probs=133.4

Q ss_pred             CCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCcccc
Q 028783            9 PTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGT   84 (204)
Q Consensus         9 ~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKGt   84 (204)
                      .+|+||||+|  ||  .||||||+++||++||||+|||+||+||+|+++|++||||+|++++++++++|||+|+|+|+||
T Consensus         2 ~~QkRLAA~iL~~G~~rVw~DP~~~~eI~~A~tR~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r~kGr~~G~G~RkGt   81 (145)
T cd01418           2 SSQRRLAADILGVGINRVWIDPERLEEVAEAITRDDIRALIKEGVIKAKPKKGISRGRLKERHEKRKKGRRRGPGSRKGK   81 (145)
T ss_pred             cHHHHHHHHHHCCCCCeeeeChHHHHHHHHhhhHHHHHHHHHCCCeeecCCCCCCHHHHHHHHHHHHhCcCCCCCCCCCc
Confidence            5799999999  88  4999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHH
Q 028783           85 REARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHK  144 (204)
Q Consensus        85 k~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk  144 (204)
                      +|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++||..
T Consensus        82 ~~AR~p~K~~W~~riR~lRr~Lk~~R~~~kId~~~Yr~lY~kaKGn~Fkn~~~L~~~I~~  141 (145)
T cd01418          82 KGARTPKKERWIKTIRALRRYLKELRDKGKIDKKTYRKLYRKAKGGSFRSLSHLKSYLKQ  141 (145)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999975

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.

>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed

Probab=100.00  E-value=1.2e-64  Score=415.85  Aligned_cols=140  Identities=34%  Similarity=0.573  Sum_probs=135.9

Q ss_pred             CCCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCcc
Q 028783            7 PWPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK   82 (204)
Q Consensus         7 ~~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRK   82 (204)
                      ...+|+||||+|  ||  .||||||+++||++||||+|||+||+||+|+++|++||||+|++++++++++|||+|+|+|+
T Consensus         3 ~l~~qkRLAA~iL~~G~~rVw~DP~~~~eI~~A~tR~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r~kGr~~G~G~Rk   82 (150)
T PRK08570          3 DLSAQKRLAADILGVGVSRVWIDPEALEDVAEAITREDIRELIKEGVIKAKPKKGISRGRARERHEKRKKGRRRGPGSRK   82 (150)
T ss_pred             chHHHHHHHHHHHCCCccceeeCHHHHHHHHHHhhHHHHHHHHHCCCeeecCccCCChHHHHHHHHHHHhCCCCCCCCCC
Confidence            346899999999  88  49999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhh
Q 028783           83 GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK  146 (204)
Q Consensus        83 Gtk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~K  146 (204)
                      ||+|||+|+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++||+...
T Consensus        83 Gt~~AR~p~K~~W~~riR~lRr~Lk~lR~~~kId~~~Yr~lY~kaKGn~Fkn~~~L~~~i~~~~  146 (150)
T PRK08570         83 GKKGARTPKKERWINRIRALRRYLRELRDEGKIDRKTYRKLYRKAKGGEFRSVSHLKTYIEEHG  146 (150)
T ss_pred             CcccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCccCCHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999753

>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.5e-59  Score=381.57  Aligned_cols=141  Identities=41%  Similarity=0.636  Sum_probs=136.9

Q ss_pred             CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783            8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (204)
Q Consensus         8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG   83 (204)
                      ..+|+||||+|  ||  .||||||+++||++|+||+|||.||+||+|+.+|++|+|++|+++++++++||||+|||||+|
T Consensus         4 l~~qkRLAA~il~vG~~Rvwidp~~~eei~~A~TR~dIr~LIk~g~I~~k~~kg~SrgR~rkr~~qkkkgr~rG~GsRKG   83 (150)
T COG2147           4 LRTQKRLAADILGVGENRVWIDPNEIEEIASAITREDIRALIKDGVIKAKPKKGISRGRARKRHAQKKKGRRRGPGSRKG   83 (150)
T ss_pred             HHHHHHHHHHHHccCcceeeeChHHHHHHHHhhhHHHHHHHHHCCCeeeccccccchHHHHHHHHHHhcccCCCCCcccc
Confidence            35899999999  88  399999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhH
Q 028783           84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAE  148 (204)
Q Consensus        84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kae  148 (204)
                      |++||||+|+.||.+||+||++|++||++|+||+|+||.||+++|||.|+++++|.+||...+.+
T Consensus        84 ~k~AR~p~K~~Wi~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~aKGg~fk~~~~L~~~i~~~~~~  148 (150)
T COG2147          84 TKGARMPSKERWIKRIRALRRELRKLRDDGKIDKHTYRKLYRMAKGGAFKSKSHLKSYIEEAKLL  148 (150)
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCccccHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
3izr_T	209	Localization Of The Large Subunit Ribosomal Protein		3e-55
2zkr_p	196	Structure Of A Mammalian Ribosomal 60s Subunit With		2e-38
3zf7_T	260	High-resolution Cryo-electron Microscopy Structure		1e-34
4a1a_O	185	T.Thermophila 60s Ribosomal Subunit In Complex With		7e-34
2ww9_J	189	Cryo-Em Structure Of The Active Yeast Ssh1 Complex		2e-32
4a17_O	185	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-29
3jyw_P	176	Structure Of The 60s Proteins For Eukaryotic Riboso		2e-26
1s1i_P	142	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-26
3j21_Q	150	Promiscuous Behavior Of Proteins In Archaeal Riboso		4e-11
1ffk_M	148	Crystal Structure Of The Large Ribosomal Subunit Fr		4e-05
3ow2_O	143	Crystal Structure Of Enhanced Macrolide Bound To 50		4e-05
3g4s_P	143	Co-Crystal Structure Of Tiamulin Bound To The Large		3e-04
1s72_P	149	Refined Crystal Structure Of The Haloarcula Marismo		3e-04

>pdb|3IZR|T Chain T, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 209

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/140 (75%), Positives = 118/140 (84%)
Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E+  + + ++ QNIRKLVKDGFIIRKP KIHSRSRARR  EAK+KGRHSGYGKR+GTRE
Sbjct: 27  NEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTRE 86
Query: 87  ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLPTKI              KYRE+KKIDKHMYHDMY+KVKGN+FKNKRVLMESIHKSK
Sbjct: 87  ARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSK 146
Query: 147 AEKAREKTLSDQFEAKRAKN 166
           AEKAREKTLSDQFEAKRAK+
Sbjct: 147 AEKAREKTLSDQFEAKRAKS 166

>pdb|2ZKR|PP Chain p, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 196

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 100/139 (71%)
Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   +   ++ Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  
Sbjct: 27  NETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTAN 86
Query: 87  ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK K
Sbjct: 87  ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLK 146
Query: 147 AEKAREKTLSDQFEAKRAK 165
           A+KAR+K L+DQ EA+R+K
Sbjct: 147 ADKARKKLLADQAEARRSK 165

>pdb|3ZF7|T Chain T, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 260

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/128 (54%), Positives = 92/128 (71%)
Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
           +++RKL+KDG ++RKP K+HSRSR R+MK AK  GRH G G+R+GTREAR+P+K      
Sbjct: 39  KSVRKLIKDGLVMRKPVKVHSRSRWRQMKLAKSMGRHEGTGRREGTREARMPSKDLWMRR 98
Query: 99  XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
                    KYRE KKID+H+Y ++YMK KGNVF+NKR LME IHK K EK + + L++Q
Sbjct: 99  LRILRRLLRKYREEKKIDRHIYRELYMKAKGNVFRNKRNLMEHIHKVKNEKKKARQLAEQ 158
Query: 159 FEAKRAKN 166
             AKR K+
Sbjct: 159 LAAKRLKD 166

>pdb|4A1A|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 3. Length = 185

Iteration: 1
 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 98/140 (70%)
Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++  +IRKL+KDG ++++ T IHSRSRAR   EAKRKGRH+G GKRKGTR 
Sbjct: 27  NESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKGTRN 86
Query: 87  ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+PTK+              KYR +KKIDKH YH+ Y+  KGN++KNK VL+E+IH SK
Sbjct: 87  ARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSK 146
Query: 147 AEKAREKTLSDQFEAKRAKN 166
           A+K +   L+ Q EA+RAKN
Sbjct: 147 ADKIKSDKLTSQQEARRAKN 166

>pdb|2WW9|J Chain J, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 189

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 96/140 (68%)
Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   +   ++   IRKLVK+G I++K   +HS+SR R   ++KR+GRHSGYGKRKGTRE
Sbjct: 27  NETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTRE 86
Query: 87  ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLP+++              KYR++ KIDKH+YH +Y + KGN FK+KR L+E I ++K
Sbjct: 87  ARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAK 146
Query: 147 AEKAREKTLSDQFEAKRAKN 166
           A+  REK L+++ EA+R KN
Sbjct: 147 ADAQREKALNEEAEARRLKN 166

>pdb|4A17|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2 Length = 185

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 85/121 (70%)
Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++  +IRKL+KDG ++++ T IHSRSRAR   EAKRKGRH+G GKRKGTR 
Sbjct: 27  NESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKGTRN 86
Query: 87  ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+PTK+              KYR +KKIDKH YH+ Y+  KGN++KNK VL+E+IH SK
Sbjct: 87  ARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSK 146
Query: 147 A 147
           A
Sbjct: 147 A 147

>pdb|3JYW|P Chain P, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 176

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 73/102 (71%)
Query: 41  IRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXX 100
           IRKLVK+G I++K   +HS+SR R   ++KR+GRHSGYGKRKGTREARLP+++       
Sbjct: 40  IRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLR 99
Query: 101 XXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESI 142
                  KYR++ KIDKH+YH +Y + KGN FK+KR L+E I
Sbjct: 100 VLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHI 141

>pdb|1S1I|P Chain P, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 142

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 73/102 (71%)
Query: 41  IRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXX 100
           IRKLVK+G I++K   +HS+SR R   ++KR+GRHSGYGKRKGTREARLP+++       
Sbjct: 40  IRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLR 99
Query: 101 XXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESI 142
                  KYR++ KIDKH+YH +Y + KGN FK+KR L+E I
Sbjct: 100 VLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHI 141

>pdb|3J21|Q Chain Q, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 150

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 56/100 (56%)
Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
           ++I++L+K+G I +KP K  SR RA+   E K+KGRH G G RKG + AR+  K      
Sbjct: 39  EDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKT 98
Query: 99  XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL 138
                    K +  KKID+  Y  +Y++ KG  FKNK  L
Sbjct: 99  IRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQL 138

>pdb|1FFK|M Chain M, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 148

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%)
Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
           +++R+LV +G I  K  K +SR RAR  ++ + KG   G G RKG   AR  +K      
Sbjct: 38  EDVRELVDEGAIQAKDKKGNSRGRARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESR 97
Query: 99  XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVF 132
                    + R+   +    Y D+Y K  G  F
Sbjct: 98  IRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEF 131

>pdb|3OW2|O Chain O, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit Length = 143

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%)
Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
           +++R+LV +G I  K  K +SR RAR  ++ + KG   G G RKG   AR  +K      
Sbjct: 38  EDVRELVDEGAIQAKDKKGNSRGRARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESR 97
Query: 99  XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVF 132
                    + R+   +    Y D+Y K  G  F
Sbjct: 98  IRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEF 131

>pdb|3G4S|P Chain P, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 143

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 42/94 (44%)
Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
           +++R+LV +G I  K  K +SR RAR  ++ +  G   G G RKG   AR  +K      
Sbjct: 38  EDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESR 97
Query: 99  XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVF 132
                    + R+   +    Y D+Y K  G  F
Sbjct: 98  IRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEF 131

>pdb|1S72|P Chain P, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 149

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 42/94 (44%)
Query: 39  QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
           +++R+LV +G I  K  K +SR RAR  ++ +  G   G G RKG   AR  +K      
Sbjct: 39  EDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESR 98
Query: 99  XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVF 132
                    + R+   +    Y D+Y K  G  F
Sbjct: 99  IRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEF 132
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
3iz5_T	209	60S ribosomal protein L19 (L19E); eukaryotic ribos	9e-45
3jyw_P	176	60S ribosomal protein L19; eukaryotic ribosome, RA	7e-43
4a17_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	1e-42
4a1a_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	1e-41
3u5e_R	189	60S ribosomal protein L19-A; translation, ribosome	7e-41
2zkr_p	196	60S ribosomal protein L19; protein-RNA complex, 60	9e-39
1vq8_P	149	50S ribosomal protein L19E; ribosome 50S, protein-	1e-37
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Length = 176

 Score =  141 bits (356), Expect = 7e-43
 Identities = 72/150 (48%), Positives = 100/150 (66%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   +   ++   IRKLVK+G I++K   +HS+SR R   ++KR+GRHSGYGKRKGTRE
Sbjct: 26  NETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTRE 85

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLP++++W+RR+RVLRRLL KYR++ KIDKH+YH +Y + KGN FK+KR L+E I  + 
Sbjct: 86  ARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAA 145

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLAR 176
           A  A     +    A  A   A+     A 
Sbjct: 146 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 175

>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} Length = 185

 Score =  140 bits (354), Expect = 1e-42
 Identities = 77/121 (63%), Positives = 98/121 (80%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++  +IRKL+KDG ++++ T IHSRSRAR   EAKRKGRH+G GKRKGTR 
Sbjct: 27  NESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKGTRN 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+PTK+LWMRR RVLRRLLRKYR +KKIDKH YH+ Y+  KGN++KNK VL+E+IH SK
Sbjct: 87  ARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSK 146

Query: 147 A 147
           A
Sbjct: 147 A 147

>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O Length = 185

 Score =  138 bits (349), Expect = 1e-41
 Identities = 89/154 (57%), Positives = 118/154 (76%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   + + ++  +IRKL+KDG ++++ T IHSRSRAR   EAKRKGRH+G GKRKGTR 
Sbjct: 27  NESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKGTRN 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+PTK+LWMRR RVLRRLLRKYR +KKIDKH YH+ Y+  KGN++KNK VL+E+IH SK
Sbjct: 87  ARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           A+K +   L+ Q EA+RAKN ASR ++  + +  
Sbjct: 147 ADKIKSDKLTSQQEARRAKNTASRAKRNEKAQIV 180

>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P Length = 189

 Score =  136 bits (343), Expect = 7e-41
 Identities = 84/163 (51%), Positives = 121/163 (74%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   +   ++   IRKLVK+G I++K   +HS+SR R   ++KR+GRHSGYGKRKGTRE
Sbjct: 27  NETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTRE 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           ARLP++++W+RR+RVLRRLL KYR++ KIDKH+YH +Y + KGN FK+KR L+E I ++K
Sbjct: 87  ARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGEKA 189
           A+  REK L+++ EA+R KN+A+R+R+  R  E+      E A
Sbjct: 147 ADAQREKALNEEAEARRLKNRAARDRRAQRVAEKRDALLKEDA 189

>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 196

 Score =  131 bits (330), Expect = 9e-39
 Identities = 95/157 (60%), Positives = 123/157 (78%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
           +E   +   ++ Q IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  
Sbjct: 27  NETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTAN 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK K
Sbjct: 87  ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLK 146

Query: 147 AEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQ 183
           A+KAR+K L+DQ EA+R+K K +R+R+  R + +  +
Sbjct: 147 ADKARKKLLADQAEARRSKTKEARKRREERLQAKKEE 183

>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ... Length = 149

 Score =  126 bits (319), Expect = 1e-37
 Identities = 36/122 (29%), Positives = 55/122 (45%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
                +      +++R+LV +G I  K  K +SR RAR  ++ +  G   G G RKG   
Sbjct: 27  ERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAG 86

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
           AR  +K  W  R+R  R  LR+ R+   +    Y D+Y K  G  F +   L   I  + 
Sbjct: 87  ARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANH 146

Query: 147 AE 148
            +
Sbjct: 147 GD 148

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 32/203 (15%), Positives = 50/203 (24%), Gaps = 68/203 (33%)

Query: 41  IRKLVKDGFIIRKPTKI------------------------HSRSRARRMKEAKRKGRHS 76
            RK+     +      I                        H  S   +  +       S
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 77  GYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKH---------------MYH 121
            Y + K   E            +   R ++  Y   K  D                  +H
Sbjct: 431 IYLELKVKLENE--------YALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 122 ----DMYMKVKG--NVFKNKRVLMESI-HKSKAEKAREKTLSD--QFEAKR---AKNKAS 169
               +   ++     VF + R L + I H S A  A    L+   Q +  +     N   
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 170 RERK-------LARREERLAQGP 185
            ER        L + EE L    
Sbjct: 541 YERLVNAILDFLPKIEENLICSK 563

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
3u5e_R	189	60S ribosomal protein L19-A; translation, ribosome	100.0
3iz5_T	209	60S ribosomal protein L19 (L19E); eukaryotic ribos	100.0
4a1a_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	100.0
2zkr_p	196	60S ribosomal protein L19; protein-RNA complex, 60	100.0
4a17_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	100.0
1vq8_P	149	50S ribosomal protein L19E; ribosome 50S, protein-	100.0
3j21_Q	150	PFEL19, 50S ribosomal protein L19E; archaea, archa	100.0
3jyw_P	176	60S ribosomal protein L19; eukaryotic ribosome, RA	100.0

>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P

Probab=100.00  E-value=5.7e-81  Score=526.63  Aligned_cols=176  Identities=49%  Similarity=0.807  Sum_probs=170.2

Q ss_pred             CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783            8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (204)
Q Consensus         8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG   83 (204)
                      .++|+||||+|  ||  +|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+|+|
T Consensus         4 L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~GkRKG   83 (189)
T 3u5e_R            4 LRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKG   83 (189)
T ss_dssp             CHHHHHHHHHHHTSCGGGCEECTTCHHHHHTCCSHHHHHHHHTTTSEECCCCCCCCTHHHHHHHHHHHTTCSCSGGGCCS
T ss_pred             hHHHHHHHHHHHCCCCCeeecCHHHHHHHHhhhhHHHHHHHHHCCCeEecCccCCChhHHHHHHHHHHhCCCCCCCcccc
Confidence            46899999999  88  499999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHHH
Q 028783           84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR  163 (204)
Q Consensus        84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeArr  163 (204)
                      |+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++++|+|||||+|
T Consensus        84 t~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqaea~r  163 (189)
T 3u5e_R           84 TREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARR  163 (189)
T ss_dssp             CHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhc
Q 028783          164 AKNKASRERKLARREERLAQ  183 (204)
Q Consensus       164 ~k~k~~r~r~~~r~~~~~~~  183 (204)
                      +++++++++++++.+++.++
T Consensus       164 ~k~k~~~~r~~~~~~~k~~~  183 (189)
T 3u5e_R          164 LKNRAARDRRAQRVAEKRDA  183 (189)
T ss_dssp             HHHHHHHHHHHHTTTSSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999988887655443

>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O

Probab=100.00  E-value=5.4e-80  Score=519.14  Aligned_cols=171  Identities=54%  Similarity=0.870  Sum_probs=138.1

Q ss_pred             CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783            8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (204)
Q Consensus         8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG   83 (204)
                      .++|+||||+|  ||  +|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+|+|
T Consensus         4 L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~GkRKG   83 (185)
T 4a1a_O            4 LRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKG   83 (185)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTTCCS
T ss_pred             hHHHHHHHHHHhCCCCcccccChHHHHHHHhcccHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCcccc
Confidence            46899999999  88  499999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHHH
Q 028783           84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR  163 (204)
Q Consensus        84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeArr  163 (204)
                      |+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+|||||+|
T Consensus        84 t~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqaea~r  163 (185)
T 4a1a_O           84 TRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARR  163 (185)
T ss_dssp             CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTC----------------
T ss_pred             chhccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHH
Q 028783          164 AKNKASRERKLARRE  178 (204)
Q Consensus       164 ~k~k~~r~r~~~r~~  178 (204)
                      +|++++++++.++.+
T Consensus       164 ~k~k~~r~~~~~~~~  178 (185)
T 4a1a_O          164 AKNTASRAKRNEKAQ  178 (185)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHhHHHHHH
Confidence            999999998877654

>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=9.6e-78  Score=509.13  Aligned_cols=179  Identities=56%  Similarity=0.869  Sum_probs=145.3

Q ss_pred             CCCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCcc
Q 028783            7 PWPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK   82 (204)
Q Consensus         7 ~~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRK   82 (204)
                      ..++|+||||+|  ||  +||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|||+|+
T Consensus         3 ~L~~QKRLAA~VL~cG~~rVWlDP~~~~eI~~A~sR~~IR~LIkdG~I~~Kp~~~~SR~R~r~~~~ar~kGRh~G~GkRK   82 (196)
T 2zkr_p            3 MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRK   82 (196)
T ss_dssp             ------CHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCC-CCHHHHHHHHHHHHTCCCC-----
T ss_pred             chHHHHHHHHHHHCCCcCceecChHHHHHHHHhhhHHHHHHHHHCCCeEecCcccccHHHHHHHHHHHHhCCCCCCCCCc
Confidence            457899999999  88  49999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHH
Q 028783           83 GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAK  162 (204)
Q Consensus        83 Gtk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeAr  162 (204)
                      ||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.|||++++++|+||+||+
T Consensus        83 Gt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~LY~kaKGn~Fknk~~L~e~I~~~Kae~~r~k~l~~q~ea~  162 (196)
T 2zkr_p           83 GTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEAR  162 (196)
T ss_dssp             -CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHHHH
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHhcCC
Q 028783          163 RAKNKASRERKLARREERLAQGP  185 (204)
Q Consensus       163 r~k~k~~r~r~~~r~~~~~~~~~  185 (204)
                      |++++++++++.++.+++.+++.
T Consensus       163 r~k~k~~r~~r~~~~~~~~~~~~  185 (196)
T 2zkr_p          163 RSKTKEARKRREERLQAKKEEII  185 (196)
T ss_dssp             HTTTHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988876654

>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}

Probab=100.00  E-value=1.6e-75  Score=491.92  Aligned_cols=158  Identities=51%  Similarity=0.816  Sum_probs=154.2

Q ss_pred             CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783            8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (204)
Q Consensus         8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG   83 (204)
                      .++|+||||+|  ||  +|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+|+|
T Consensus         4 L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kpv~~~SR~R~r~~~~ar~kGRh~G~GkRKG   83 (185)
T 4a17_O            4 LRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKG   83 (185)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTTCCS
T ss_pred             hHHHHHHHHHHhCCCCCeeecChHHHHHHHhcccHHHHHHHHHCCCEEeCCcccCChHHHHHHHHHHHhCCCCCCCCCCC
Confidence            46899999999  88  499999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHHH
Q 028783           84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR  163 (204)
Q Consensus        84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeArr  163 (204)
                      |+|||||+|++||+|||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+|||||.-
T Consensus        84 t~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dqaea~~  163 (185)
T 4a17_O           84 TRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKAXXXXXXXXXXXXXXXX  163 (185)
T ss_dssp             CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCChHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhhhcccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             hh
Q 028783          164 AK  165 (204)
Q Consensus       164 ~k  165 (204)
                      .-
T Consensus       164 ~~  165 (185)
T 4a17_O          164 XX  165 (185)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...

Probab=100.00  E-value=8.3e-70  Score=444.89  Aligned_cols=143  Identities=27%  Similarity=0.392  Sum_probs=135.5

Q ss_pred             CCCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCcc
Q 028783            7 PWPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK   82 (204)
Q Consensus         7 ~~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRK   82 (204)
                      ..++|+||||+|  ||  +|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+|+
T Consensus         3 ~l~~QKRLAA~vL~cG~~rVw~DP~~~~eI~~A~sR~~IR~LIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~GkRk   82 (149)
T 1vq8_P            3 DLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRK   82 (149)
T ss_dssp             CCHHHHHHHHHHTTSCGGGEEECGGGHHHHHHCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGGCC
T ss_pred             chHHHHHHHHHHHCCCcCceecCHHHHHHHHhcccHHHHHHHHHCCCeEeccccCccHHHHHHHHHHHHhCCCCCCCCCc
Confidence            356899999999  88  49999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHH
Q 028783           83 GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK  149 (204)
Q Consensus        83 Gtk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek  149 (204)
                      ||+|||||+|+.||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||+.++|+
T Consensus        83 Gt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~~~I~~~~~~~  149 (149)
T 1vq8_P           83 GKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA  149 (149)
T ss_dssp             SCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTTCCSSHHHHHHHHTC-----
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999874

>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3e-69  Score=442.03  Aligned_cols=138  Identities=37%  Similarity=0.632  Sum_probs=135.3

Q ss_pred             CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783            8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (204)
Q Consensus         8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG   83 (204)
                      ..+|+||||+|  ||  +|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+|+|
T Consensus         4 l~~QKRLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~GkRkG   83 (150)
T 3j21_Q            4 LKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGSRKG   83 (150)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSTTTCCS
T ss_pred             hHHHHHHHHHHHcCCcceeecChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCcCHHHHHHHHHHHHhcccCCCCcccC
Confidence            46899999999  88  499999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHh
Q 028783           84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKS  145 (204)
Q Consensus        84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~  145 (204)
                      |+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||..
T Consensus        84 t~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~i~~~  145 (150)
T 3j21_Q           84 KKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEH  145 (150)
T ss_dssp             CHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCSCHHHHHHHHHHH
T ss_pred             cccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999975

>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=100.00  E-value=7.1e-67  Score=437.05  Aligned_cols=150  Identities=48%  Similarity=0.793  Sum_probs=144.8

Q ss_pred             CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783            8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (204)
Q Consensus         8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG   83 (204)
                      .++|+||||+|  ||  +|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+|+|
T Consensus         3 l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGr~~G~GkRkG   82 (176)
T 3jyw_P            3 LRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKG   82 (176)
T ss_dssp             CHHHHHHHHHHHTCCTTTEECCSSCCHHHHHCCSHHHHHHHHHHTCSEECCCCCCCSHHHHHHHHHHTTTSSCSSSSCSS
T ss_pred             cHHHHHHHHHHhCCCCCccccChHHHHHHHhhccHHHHHHHHHCCCEEeCCCcCCChHHHHHHHHHHhcCCCCCCCCCcc
Confidence            36899999999  88  499999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhH
Q 028783           84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSD  157 (204)
Q Consensus        84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~d  157 (204)
                      |+|||||+|++||++||+||++|++|||+|+||+|+||.||+++|||+|+|+++|+||||++|+|+++.-..+.
T Consensus        83 t~~AR~p~K~~Wm~riR~lRrlLr~yRe~gkIDk~lYr~LY~kaKGn~Fknk~~L~e~I~k~ka~~~~~~~~~~  156 (176)
T 3jyw_P           83 TREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAA  156 (176)
T ss_dssp             CTTCSSCHHHHHHHHHHHHHHHHSTTTTTTSSCSTTTTTTGGGTTTTCCCSTTHHHHCTTTTGGGGHHHHHHGG
T ss_pred             cccccCChHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHHhcCCEechHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1vqop1	143	a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {A	1e-43

>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 143

class: All alpha proteins
fold: Ribosomal protein L19 (L19e)
superfamily: Ribosomal protein L19 (L19e)
family: Ribosomal protein L19 (L19e)
domain: Ribosomal protein L19 (L19e)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  140 bits (355), Expect = 1e-43
 Identities = 36/117 (30%), Positives = 53/117 (45%)

Query: 27  SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
                +      +++R+LV +G I  K  K +SR RAR  ++ +  G   G G RKG   
Sbjct: 26  ERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAG 85

Query: 87  ARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIH 143
           AR  +K  W  R+R  R  LR+ R+   +    Y D+Y K  G  F +   L   I 
Sbjct: 86  ARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYID 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1vqop1	143	Ribosomal protein L19 (L19e) {Archaeon Haloarcula	100.0

>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Ribosomal protein L19 (L19e)
superfamily: Ribosomal protein L19 (L19e)
family: Ribosomal protein L19 (L19e)
domain: Ribosomal protein L19 (L19e)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=6.7e-66  Score=417.55  Aligned_cols=137  Identities=28%  Similarity=0.400  Sum_probs=133.8

Q ss_pred             CCCCCccccccc--ccc--eeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCcc
Q 028783            7 PWPTPHRIFSSV--CES--HITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK   82 (204)
Q Consensus         7 ~~~~q~rla~~V--~gk--vWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRK   82 (204)
                      --.+|+||||+|  ||.  |||||||++||++||||+|||+||+||+|+.+|++||||+|++++++++++|||+|+|+|+
T Consensus         2 nL~~QKRLAa~vL~~G~~rVw~DP~~~~eI~~A~tr~dIR~LI~dG~I~~kp~kg~Sr~R~r~~~~~k~kGr~~G~GkRK   81 (143)
T d1vqop1           2 DLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRK   81 (143)
T ss_dssp             CCHHHHHHHHHHTTSCGGGEEECGGGHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGGCC
T ss_pred             chHHHHHHHHHHHCCCCCeeeeChHHHHHHHHhhhHHHHHHHHHCCCEEeCCCCCCcHHHHHHHHHHHHhCCCCCcCCCc
Confidence            346899999999  884  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHH
Q 028783           83 GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIH  143 (204)
Q Consensus        83 Gtk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ih  143 (204)
                      ||+|||+|+|+.||++||+||++|++|||+|+||+|+||+||++||||+|+|++||++||+
T Consensus        82 Gt~~AR~p~K~~Wm~riR~lRr~Lk~lr~~~~Id~~~Yr~LY~kaKGn~Fknk~~L~~~I~  142 (143)
T d1vqop1          82 GKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYID  142 (143)
T ss_dssp             SCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHT
T ss_pred             CcccccCCchhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCcccCHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999996