Citrus Sinensis ID: 028806
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 203 | 2.2.26 [Sep-21-2011] | |||||||
| Q58DT8 | 382 | WD repeat-containing prot | yes | no | 0.743 | 0.395 | 0.447 | 7e-31 | |
| Q9CX97 | 388 | WD repeat-containing prot | yes | no | 0.699 | 0.365 | 0.454 | 2e-30 | |
| A1L112 | 384 | WD repeat-containing prot | yes | no | 0.699 | 0.369 | 0.454 | 3e-30 | |
| Q9H6Y2 | 383 | WD repeat-containing prot | yes | no | 0.699 | 0.370 | 0.447 | 5e-30 | |
| B2ZZS9 | 400 | WD repeat-containing prot | N/A | no | 0.822 | 0.417 | 0.394 | 1e-29 | |
| Q5R9T6 | 383 | WD repeat-containing prot | yes | no | 0.699 | 0.370 | 0.447 | 2e-29 | |
| Q54SA5 | 408 | WD repeat-containing prot | yes | no | 0.714 | 0.355 | 0.401 | 6e-28 | |
| Q6DRF9 | 387 | WD repeat-containing prot | yes | no | 0.699 | 0.366 | 0.412 | 1e-27 | |
| P0CS40 | 374 | WD repeat-containing prot | yes | no | 0.733 | 0.398 | 0.414 | 5e-25 | |
| P0CS41 | 374 | WD repeat-containing prot | N/A | no | 0.733 | 0.398 | 0.414 | 5e-25 |
| >sp|Q58DT8|WDR55_BOVIN WD repeat-containing protein 55 OS=Bos taurus GN=WDR55 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
M D LL SGDG L V N+++ + SE +LTSV LMK GRKV CGS GT
Sbjct: 174 MALDPDKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKYGRKVACGSSEGT 233
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+ L++W F SDRF L S+D ++ + E + GS +G+I V ILPNR++ + +
Sbjct: 234 IYLFNWDGFGATSDRFA-LRAESIDCMVPVTESLLCAGSTDGVIRAVNILPNRVVGSVGQ 292
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
H+E P+E+LALSH FL S HD LK WD+
Sbjct: 293 HAEEPVENLALSHCGCFLASSGHDQRLKFWDM 324
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Bos taurus (taxid: 9913) |
| >sp|Q9CX97|WDR55_MOUSE WD repeat-containing protein 55 OS=Mus musculus GN=Wdr55 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 184 LLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFNWNGF 243
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P+E+L
Sbjct: 244 GATSDRF-ALRAESIDCIVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEPVEAL 302
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
ALSH FL S HD LK WD+
Sbjct: 303 ALSHCGHFLASSGHDQRLKFWDM 325
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Mus musculus (taxid: 10090) |
| >sp|A1L112|WDR55_RAT WD repeat-containing protein 55 OS=Rattus norvegicus GN=Wdr55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 183 LLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFNWNGF 242
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P+E L
Sbjct: 243 GATSDRF-ALRAESIDCMVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEPVEEL 301
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
ALSH FL S HD LK WD+
Sbjct: 302 ALSHCGHFLASSGHDQRLKFWDM 324
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Rattus norvegicus (taxid: 10116) |
| >sp|Q9H6Y2|WDR55_HUMAN WD repeat-containing protein 55 OS=Homo sapiens GN=WDR55 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L + N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 183 LLTASGDGCLGIFNIKRRRFELLSEPQSGDLTSVTLMKWGKKVACGSSEGTIYLFNWNGF 242
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P+E L
Sbjct: 243 GATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEPVEEL 301
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
ALSH +FL S HD LK WD+
Sbjct: 302 ALSHCGRFLASSGHDQRLKFWDM 324
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Homo sapiens (taxid: 9606) |
| >sp|B2ZZS9|WDR55_ORYLA WD repeat-containing protein 55 OS=Oryzias latipes GN=wdr55 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 3/170 (1%)
Query: 3 FAADAMK--LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
A D K LL TSGDGT+ V N+++ + SEF +LTSV LMK G+KVVCGS GT
Sbjct: 190 IAVDQAKRILLTTSGDGTMGVFNIKRRRFELLSEFQSGDLTSVALMKRGKKVVCGSSEGT 249
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
V +++W F SDRF + SVD ++ + + + T S +G I + +LPNR+I I +
Sbjct: 250 VYIFNWNGFGATSDRF-AVKAESVDCIVPITDSIMCTASMDGYIRAINLLPNRVIGCIGQ 308
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAAESD 170
H PIE + S D +FL S +HD ++K W++ ++ K + ++ + + D
Sbjct: 309 HVGEPIEEINKSWDSRFLVSCAHDQLIKFWEISNLQKTTVSDYRKRKKKD 358
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Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis, including thymus development. Oryzias latipes (taxid: 8090) |
| >sp|Q5R9T6|WDR55_PONAB WD repeat-containing protein 55 OS=Pongo abelii GN=WDR55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++W F
Sbjct: 183 LLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKCGKKVACGSSEGTIYLFNWNGF 242
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P+ L
Sbjct: 243 GATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEPVGEL 301
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
ALSH +FL S HD LK WD+
Sbjct: 302 ALSHCGRFLASSGHDQRLKFWDM 324
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Pongo abelii (taxid: 9601) |
| >sp|Q54SA5|WDR55_DICDI WD repeat-containing protein 55 homolog OS=Dictyostelium discoideum GN=wdr55 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
D + TSGDG +S+ N + ++ SE S+ EL S + + NG+K+VCGSQ G++L+Y
Sbjct: 156 DDRHIAATSGDGGVSIYNFVRKSMDDISEKSDNELLSCLSLDNGQKLVCGSQDGSILIYD 215
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
++ +F G P SVDAL+K++ + +GS +G+I +G+ P +++ + EHS +P
Sbjct: 216 RNNLENVK-KFAG-HPQSVDALVKVNNNTFFSGSSDGIIRFIGLRPKKLLGVVGEHSTFP 273
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
IE +A+S D ++LGSISHD LK W++
Sbjct: 274 IERMAISRDNRYLGSISHDFSLKFWNV 300
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q6DRF9|WDR55_DANRE WD repeat-containing protein 55 OS=Danio rerio GN=wdr55 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
LL +SGDGTL V N+++ + SE +LTSV +MK GRKVVCGS GT+ +++W F
Sbjct: 180 LLTSSGDGTLGVFNIKRRRFELLSEIQNGDLTSVSIMKRGRKVVCGSGEGTIYIFNWNGF 239
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129
SDRF + SVD ++ + + + S +G+I + ILPNR++ I +H IE +
Sbjct: 240 GATSDRF-AVQAESVDCIVPITDSILCAASTDGVIRAINILPNRVVGSIGQHVGEAIEEI 298
Query: 130 ALSHDRKFLGSISHDSMLKLWDL 152
A D FL S +HD ++K WD+
Sbjct: 299 ARCRDTHFLASCAHDELIKFWDI 321
|
Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Danio rerio (taxid: 7955) |
| >sp|P0CS40|JIP5_CRYNJ WD repeat-containing protein JIP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=JIP5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 8/157 (5%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS 58
T+ D +L+ TSGDG LSV ++R K+T T SE E+EL S+V +K G+K + GS
Sbjct: 169 FTYFDDKRQLVATSGDGHLSVIDIRSNKSTPLTVSEDQEDELLSIVPIKGGQKAIVGS-- 226
Query: 59 GTVLLYSWGY---FKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115
G +L W + D DR G P S+DA++ L D + TGSE+G+I ++ +LP++ +
Sbjct: 227 GLGILSVWNRQMGWADSVDRIPG-HPASIDAIVALTPDIIATGSEDGMIRVIQVLPHKFL 285
Query: 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
+A H E+P+E + L + K+LGS+SHD LKL D+
Sbjct: 286 GVVATHEEFPVERIRLDRNNKWLGSVSHDECLKLTDV 322
|
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|P0CS41|JIP5_CRYNB WD repeat-containing protein JIP5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=JIP5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 8/157 (5%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS 58
T+ D +L+ TSGDG LSV ++R K+T T SE E+EL S+V +K G+K + GS
Sbjct: 169 FTYFDDKRQLVATSGDGHLSVIDIRSNKSTPLTVSEDQEDELLSIVPIKGGQKAIVGS-- 226
Query: 59 GTVLLYSWGY---FKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115
G +L W + D DR G P S+DA++ L D + TGSE+G+I ++ +LP++ +
Sbjct: 227 GLGILSVWNRQMGWADSVDRIPG-HPASIDAIVALTPDIIATGSEDGMIRVIQVLPHKFL 285
Query: 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
+A H E+P+E + L + K+LGS+SHD LKL D+
Sbjct: 286 GVVATHEEFPVERIRLDRNNKWLGSVSHDECLKLTDV 322
|
Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 203 | ||||||
| 224079375 | 348 | predicted protein [Populus trichocarpa] | 1.0 | 0.583 | 0.745 | 1e-83 | |
| 357477601 | 420 | WD-40 repeat protein [Medicago truncatul | 0.995 | 0.480 | 0.700 | 2e-81 | |
| 217072834 | 359 | unknown [Medicago truncatula] | 0.995 | 0.562 | 0.695 | 4e-80 | |
| 388508106 | 359 | unknown [Medicago truncatula] gi|3885100 | 0.995 | 0.562 | 0.695 | 4e-80 | |
| 225463585 | 346 | PREDICTED: WD repeat-containing protein | 1.0 | 0.586 | 0.780 | 7e-80 | |
| 225433585 | 346 | PREDICTED: WD repeat-containing protein | 1.0 | 0.586 | 0.775 | 9e-79 | |
| 356544310 | 340 | PREDICTED: WD repeat-containing protein | 0.985 | 0.588 | 0.738 | 1e-78 | |
| 356534870 | 352 | PREDICTED: WD repeat-containing protein | 1.0 | 0.576 | 0.698 | 2e-77 | |
| 356577598 | 313 | PREDICTED: WD repeat-containing protein | 1.0 | 0.648 | 0.701 | 2e-77 | |
| 224065234 | 348 | predicted protein [Populus trichocarpa] | 0.995 | 0.580 | 0.688 | 4e-77 |
| >gi|224079375|ref|XP_002305841.1| predicted protein [Populus trichocarpa] gi|222848805|gb|EEE86352.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/208 (74%), Positives = 181/208 (87%), Gaps = 5/208 (2%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLL TSGDGTLSVCNLR N +Q++SEFSEEEL SVV+MKNGRKV+CGSQ+GT
Sbjct: 141 MTFASDSMKLLSTSGDGTLSVCNLRSNKIQSQSEFSEEELLSVVIMKNGRKVICGSQNGT 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF GLSPNS+DALLKLDEDRVITGSENGLISL+GILPNRIIQP+AE
Sbjct: 201 LLLYSWGFFKDCSDRFTGLSPNSIDALLKLDEDRVITGSENGLISLLGILPNRIIQPLAE 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNIS-QAAESDSDGDDMDVD 179
HSEYPIE LA SHDRKFLGSISHD +LK+WDLDD+L+ S N + QAA SDSD D+MDVD
Sbjct: 261 HSEYPIEHLAFSHDRKFLGSISHDQVLKMWDLDDLLQNSVNAQNDQAAVSDSDSDEMDVD 320
Query: 180 NKV--TSKSASKG--HAGSSSNNFFADL 203
K + K A + +A ++++FFADL
Sbjct: 321 TKPPKSRKGAKRKNENANGAASSFFADL 348
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357477601|ref|XP_003609086.1| WD-40 repeat protein [Medicago truncatula] gi|355510141|gb|AES91283.1| WD-40 repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/217 (70%), Positives = 177/217 (81%), Gaps = 15/217 (6%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMK+L TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 205 ITFASDAMKILATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 264
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRFV L+ NS+D +LKLDEDR+ITGSENG+I+LVGILPNRII+PIAE
Sbjct: 265 LLLYSWGCFKDCSDRFVDLASNSIDTMLKLDEDRIITGSENGMINLVGILPNRIIEPIAE 324
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN-------ISQAAESDSDG 173
HSEYP+E LA SHDRKFLGSI HD MLKLWDLD+IL+GS + ++ +SD DG
Sbjct: 325 HSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDNILQGSRSTQRNETGVVANDGDSD-DG 383
Query: 174 DDMDVDNKVTS-------KSASKGHAGSSSNNFFADL 203
D+MDVDN + K+AS GHA SNNFFADL
Sbjct: 384 DEMDVDNSASKFSKGNKRKNASNGHAVGDSNNFFADL 420
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072834|gb|ACJ84777.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 151/217 (69%), Positives = 175/217 (80%), Gaps = 15/217 (6%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMK+L TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 144 ITFASDAMKILATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 203
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRFV L+ NS+D +LKLDE R+ITGSENG+I+LVGILPNRII+PIAE
Sbjct: 204 LLLYSWGCFKDCSDRFVDLASNSIDTMLKLDEGRIITGSENGMINLVGILPNRIIEPIAE 263
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN-------ISQAAESDSDG 173
HSEYP+E LA SHDRKFLGSI HD MLKLWDLD+IL+GS + ++ +SD DG
Sbjct: 264 HSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDNILQGSRSTQRNETGVVANDGDSD-DG 322
Query: 174 DDMDVDNKV-------TSKSASKGHAGSSSNNFFADL 203
D+MDVDN K+AS GHA SNNFFADL
Sbjct: 323 DEMDVDNSAFKFSKGNRRKNASNGHAVGDSNNFFADL 359
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388508106|gb|AFK42119.1| unknown [Medicago truncatula] gi|388510080|gb|AFK43106.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 151/217 (69%), Positives = 175/217 (80%), Gaps = 15/217 (6%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMK+L TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 144 ITFASDAMKILATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 203
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRFV L+ NS+D +LKLDE R+ITGSENG+I+LVGILPNRII+PIAE
Sbjct: 204 LLLYSWGCFKDCSDRFVDLASNSIDTMLKLDEGRIITGSENGMINLVGILPNRIIEPIAE 263
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN-------ISQAAESDSDG 173
HSEYP+E LA SHDRKFLGSI HD MLKLWDLD+IL+GS + ++ +SD DG
Sbjct: 264 HSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDNILQGSRSTQRNETGVVANDGDSD-DG 322
Query: 174 DDMDVDNKV-------TSKSASKGHAGSSSNNFFADL 203
D+MDVDN K+AS GHA SNNFFADL
Sbjct: 323 DEMDVDNSAFKFFKGNRRKNASNGHAVGDSNNFFADL 359
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463585|ref|XP_002271081.1| PREDICTED: WD repeat-containing protein 55 [Vitis vinifera] gi|297743547|emb|CBI36414.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 302 bits (773), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 160/205 (78%), Positives = 183/205 (89%), Gaps = 2/205 (0%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLLG SGDGTLSVCNLR+N VQ +SEFSE+EL SVV+MKNGRKV+CG+QSG
Sbjct: 142 MTFASDSMKLLGVSGDGTLSVCNLRRNKVQVQSEFSEDELLSVVIMKNGRKVICGTQSGA 201
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF+ LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE
Sbjct: 202 LLLYSWGHFKDCSDRFIDLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 261
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNI-SQAAESDSDGDDMDVD 179
HSEYP+E LA S DRK+LGSISHD MLKLWDLDD+L+GSG+ + SQ A +DSD D+MDVD
Sbjct: 262 HSEYPVERLAFSFDRKYLGSISHDQMLKLWDLDDLLQGSGSTLRSQEAMADSDSDEMDVD 321
Query: 180 NKVTS-KSASKGHAGSSSNNFFADL 203
K T K+AS G A +SS++FFADL
Sbjct: 322 AKETKRKTASNGQALNSSSSFFADL 346
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433585|ref|XP_002269842.1| PREDICTED: WD repeat-containing protein 55 [Vitis vinifera] gi|298205166|emb|CBI17225.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 298 bits (763), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 159/205 (77%), Positives = 182/205 (88%), Gaps = 2/205 (0%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLLG SGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKV+CG+QSG
Sbjct: 142 MTFASDSMKLLGVSGDGTLSVCNLRRNKVQVQSEFSEDELLSVVLMKNGRKVICGTQSGA 201
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF+ LSPNSVDALLKLDED VITGSENGLISLVGILPNRIIQPIAE
Sbjct: 202 LLLYSWGHFKDCSDRFIDLSPNSVDALLKLDEDSVITGSENGLISLVGILPNRIIQPIAE 261
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNI-SQAAESDSDGDDMDVD 179
HSEYP+E LA S DRK+LGSISHD MLKLWDLDD+L+GSG+ + S+ A +DSD D+MDVD
Sbjct: 262 HSEYPVERLAFSFDRKYLGSISHDQMLKLWDLDDLLQGSGSTLRSREAMADSDSDEMDVD 321
Query: 180 NKVTS-KSASKGHAGSSSNNFFADL 203
K T K+AS G A +SS++FFADL
Sbjct: 322 AKETKRKTASNGQALNSSSSFFADL 346
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544310|ref|XP_003540596.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/203 (73%), Positives = 168/203 (82%), Gaps = 3/203 (1%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TFA+DAMKLL TSGDGTLSVCNLR+NTVQ RSEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 141 ITFASDAMKLLATSGDGTLSVCNLRRNTVQARSEFSEDELLSVVLMKNGRKVVCGSQTGI 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRF LS NS+DA+LKLDEDR+ITGSENG+I+LVGILPNR+IQPIAE
Sbjct: 201 ILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAE 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAAESDSDGDDMDVDN 180
HSEYP+E LA SHDRKFLGSI+HD MLKLWDLD+IL GS N +Q ES D D +
Sbjct: 261 HSEYPVECLAFSHDRKFLGSIAHDQMLKLWDLDNILPGSRN--TQTNESGVIDSDDDEMD 318
Query: 181 KVTSKSASKGHAGSSSNNFFADL 203
+K GHA SNNFFADL
Sbjct: 319 VDGNKR-KNGHAVGGSNNFFADL 340
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534870|ref|XP_003535974.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/212 (69%), Positives = 170/212 (80%), Gaps = 9/212 (4%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTF +DAMKLL TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 141 MTFVSDAMKLLATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGV 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRF LS NS+DA+LKLDEDR+ITGSENG+I+LVGILPNR+IQPIAE
Sbjct: 201 ILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAE 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAA---------ESDS 171
HSEYP+E LA SHD+KFLGSI+HD MLKLWDLD+IL+GSGN A E D
Sbjct: 261 HSEYPVECLAFSHDKKFLGSIAHDQMLKLWDLDNILQGSGNTQRNEAGGAVDSDDDEMDL 320
Query: 172 DGDDMDVDNKVTSKSASKGHAGSSSNNFFADL 203
D D ++ K+A+ G+A SNNFFADL
Sbjct: 321 DDDPSKINKGNKRKNANNGNALGGSNNFFADL 352
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577598|ref|XP_003556911.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/211 (70%), Positives = 169/211 (80%), Gaps = 8/211 (3%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+TF +DAMKLL TSGDGTLSVCNLR+N VQ +SEFSE+EL SVVLMKNGRKVVCGSQ+G
Sbjct: 103 ITFVSDAMKLLATSGDGTLSVCNLRRNKVQAQSEFSEDELLSVVLMKNGRKVVCGSQTGI 162
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG FKDCSDRF LS NS+DA+LKLDEDR+ITGSEN +I+LVGILPNR+IQPIAE
Sbjct: 163 ILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENRIINLVGILPNRVIQPIAE 222
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAAESDSDGDDMDVDN 180
HSEYP+E LA SHDRKFLGSISHD MLKLWDLD+IL+GSGN S A + DD +
Sbjct: 223 HSEYPVECLAFSHDRKFLGSISHDQMLKLWDLDNILQGSGNTQSNEAGAVDSDDDEMDLD 282
Query: 181 KVTS--------KSASKGHAGSSSNNFFADL 203
S K+A+ G+A SNNFFADL
Sbjct: 283 DDPSKNSKGNKRKNANNGNALGGSNNFFADL 313
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065234|ref|XP_002301730.1| predicted protein [Populus trichocarpa] gi|222843456|gb|EEE81003.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 144/209 (68%), Positives = 169/209 (80%), Gaps = 7/209 (3%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKLL TSGDGTLSVCNLR N +Q++SEFSEEEL SVV+MKNGRKV+CGSQ+GT
Sbjct: 141 MTFASDSMKLLSTSGDGTLSVCNLRTNKIQSQSEFSEEELLSVVIMKNGRKVICGSQNGT 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRF LSPNS+D LLKLDEDRVITGSENGLISL+GILPNR+IQP+AE
Sbjct: 201 LLLYSWGFFKDCSDRFTALSPNSIDTLLKLDEDRVITGSENGLISLLGILPNRVIQPLAE 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNISQAAESDSDGDDMDVDN 180
HSEYPIE LA SHDRK+LGSISHD +LK+WDLDD+L+ SGN + A D +
Sbjct: 261 HSEYPIECLAFSHDRKYLGSISHDQVLKMWDLDDLLQNSGNAQNDQAPVSDSDSDAMDMD 320
Query: 181 KVTSKSASKG------HAGSSSNNFFADL 203
KS KG HA ++++FFADL
Sbjct: 321 TKPPKS-RKGAKRKNEHANDATSSFFADL 348
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 203 | ||||||
| TAIR|locus:2040804 | 353 | WDR55 "AT2G34260" [Arabidopsis | 0.822 | 0.473 | 0.754 | 9.4e-66 | |
| UNIPROTKB|Q58DT8 | 382 | WDR55 "WD repeat-containing pr | 0.743 | 0.395 | 0.447 | 3e-30 | |
| MGI|MGI:1915186 | 388 | Wdr55 "WD repeat domain 55" [M | 0.729 | 0.381 | 0.453 | 3.8e-30 | |
| RGD|1305640 | 384 | Wdr55 "WD repeat domain 55" [R | 0.729 | 0.385 | 0.453 | 4.9e-30 | |
| UNIPROTKB|G3V1J0 | 222 | WDR55 "WD repeat domain 55, is | 0.714 | 0.653 | 0.455 | 1e-29 | |
| UNIPROTKB|Q9H6Y2 | 383 | WDR55 "WD repeat-containing pr | 0.714 | 0.378 | 0.455 | 1e-29 | |
| UNIPROTKB|B2ZZS9 | 400 | wdr55 "WD repeat-containing pr | 0.753 | 0.382 | 0.423 | 2.1e-29 | |
| UNIPROTKB|Q5R9T6 | 383 | WDR55 "WD repeat-containing pr | 0.714 | 0.378 | 0.455 | 3.4e-29 | |
| UNIPROTKB|J9P876 | 854 | IK "Uncharacterized protein" [ | 0.743 | 0.176 | 0.441 | 1.2e-28 | |
| UNIPROTKB|F1RGE2 | 873 | LOC100738153 "Uncharacterized | 0.714 | 0.166 | 0.462 | 1.7e-28 |
| TAIR|locus:2040804 WDR55 "AT2G34260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 129/171 (75%), Positives = 153/171 (89%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
MTFA+D+MKL+ TSGDGTLSVCNLR + VQ++SEFSE+EL SVV+MKNGRKV+CG+Q+GT
Sbjct: 141 MTFASDSMKLVVTSGDGTLSVCNLRTSKVQSQSEFSEDELLSVVIMKNGRKVICGTQNGT 200
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+LLYSWG+FKDCSDRFV L+PNSVDALLKLDEDR+ITG +NG+ISLVGILPNRIIQPI
Sbjct: 201 LLLYSWGFFKDCSDRFVDLAPNSVDALLKLDEDRLITGCDNGIISLVGILPNRIIQPIGS 260
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG---NNISQAAE 168
H +YPIE LALSHD+KFLGS +HDSMLKLW+L++IL+GS N S AAE
Sbjct: 261 H-DYPIEDLALSHDKKFLGSTAHDSMLKLWNLEEILEGSNVNSGNASGAAE 310
|
|
| UNIPROTKB|Q58DT8 WDR55 "WD repeat-containing protein 55" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 68/152 (44%), Positives = 91/152 (59%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
M D LL SGDG L V N+++ + SE +LTSV LMK GRKV CGS GT
Sbjct: 174 MALDPDKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKYGRKVACGSSEGT 233
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120
+ L++W F SDRF L S+D ++ + E + GS +G+I V ILPNR++ + +
Sbjct: 234 IYLFNWDGFGATSDRFA-LRAESIDCMVPVTESLLCAGSTDGVIRAVNILPNRVVGSVGQ 292
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152
H+E P+E+LALSH FL S HD LK WD+
Sbjct: 293 HAEEPVENLALSHCGCFLASSGHDQRLKFWDM 324
|
|
| MGI|MGI:1915186 Wdr55 "WD repeat domain 55" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 68/150 (45%), Positives = 94/150 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 180 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFN 239
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 240 WNGFGATSDRFA-LRAESIDCIVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEP 298
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDLDDI 155
+E+LALSH FL S HD LK WD+ +
Sbjct: 299 VEALALSHCGHFLASSGHDQRLKFWDMTQL 328
|
|
| RGD|1305640 Wdr55 "WD repeat domain 55" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 68/150 (45%), Positives = 93/150 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 179 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFN 238
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E+ + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 239 WNGFGATSDRFA-LRAESIDCMVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEP 297
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDLDDI 155
+E LALSH FL S HD LK WD+ +
Sbjct: 298 VEELALSHCGHFLASSGHDQRLKFWDMTQL 327
|
|
| UNIPROTKB|G3V1J0 WDR55 "WD repeat domain 55, isoform CRA_b" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 67/147 (45%), Positives = 92/147 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L + N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 18 AKKLLLTASGDGCLGIFNIKRRRFELLSEPQSGDLTSVTLMKWGKKVACGSSEGTIYLFN 77
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 78 WNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEP 136
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
+E LALSH +FL S HD LK WD+
Sbjct: 137 VEELALSHCGRFLASSGHDQRLKFWDM 163
|
|
| UNIPROTKB|Q9H6Y2 WDR55 "WD repeat-containing protein 55" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 67/147 (45%), Positives = 92/147 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L + N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 179 AKKLLLTASGDGCLGIFNIKRRRFELLSEPQSGDLTSVTLMKWGKKVACGSSEGTIYLFN 238
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 239 WNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEP 297
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
+E LALSH +FL S HD LK WD+
Sbjct: 298 VEELALSHCGRFLASSGHDQRLKFWDM 324
|
|
| UNIPROTKB|B2ZZS9 wdr55 "WD repeat-containing protein 55" [Oryzias latipes (taxid:8090)] | Back alignment and assigned GO terms |
|---|
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 66/156 (42%), Positives = 96/156 (61%)
Query: 4 AADAMK--LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTV 61
A D K LL TSGDGT+ V N+++ + SEF +LTSV LMK G+KVVCGS GTV
Sbjct: 191 AVDQAKRILLTTSGDGTMGVFNIKRRRFELLSEFQSGDLTSVALMKRGKKVVCGSSEGTV 250
Query: 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121
+++W F SDRF + SVD ++ + + + T S +G I + +LPNR+I I +H
Sbjct: 251 YIFNWNGFGATSDRFA-VKAESVDCIVPITDSIMCTASMDGYIRAINLLPNRVIGCIGQH 309
Query: 122 SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157
PIE + S D +FL S +HD ++K W++ ++ K
Sbjct: 310 VGEPIEEINKSWDSRFLVSCAHDQLIKFWEISNLQK 345
|
|
| UNIPROTKB|Q5R9T6 WDR55 "WD repeat-containing protein 55" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 67/147 (45%), Positives = 91/147 (61%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KV CGS GT+ L++
Sbjct: 179 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKCGKKVACGSSEGTIYLFN 238
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H+ P
Sbjct: 239 WNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQHTGEP 297
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
+ LALSH +FL S HD LK WD+
Sbjct: 298 VGELALSHCGRFLASSGHDQRLKFWDM 324
|
|
| UNIPROTKB|J9P876 IK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 68/154 (44%), Positives = 92/154 (59%)
Query: 4 AADAMK--LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTV 61
A D K LL SGDG L V N+R+ + SE +LTSV LMK G+KV CGS GT+
Sbjct: 646 ALDPSKKLLLTASGDGCLGVFNIRRRRFELLSEPQSGDLTSVTLMKYGKKVACGSSEGTI 705
Query: 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121
L++W F SDRF L S+D ++ + E + TGS +G+I V ILPNR++ + +H
Sbjct: 706 YLFNWNGFGATSDRFA-LRAESIDCMVPVTESLLCTGSTDGVIRAVNILPNRVVGSVGQH 764
Query: 122 SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155
+ P+E LALSH FL S HD LK W++ +
Sbjct: 765 AGEPVEKLALSHCTHFLASSGHDQRLKFWNMSQL 798
|
|
| UNIPROTKB|F1RGE2 LOC100738153 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.7e-28, P = 1.7e-28
Identities = 68/147 (46%), Positives = 92/147 (62%)
Query: 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65
A KLL T SGDG L V N+++ + SE +LTSV LMK G+KVVCGS GT+ L++
Sbjct: 668 AKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVTLMKCGKKVVCGSSEGTIYLFN 727
Query: 66 WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125
W F SDRF L S+D ++ + E + GS +G+I V ILPNR++ + +H+ P
Sbjct: 728 WNGFGATSDRFA-LRAESIDCMVPVTESLLCAGSTDGVIRAVHILPNRVVGSVGQHAGEP 786
Query: 126 IESLALSHDRKFLGSISHDSMLKLWDL 152
+E LALSH +FL S HD LK WD+
Sbjct: 787 VEKLALSHCGRFLASSGHDQRLKFWDM 813
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pm.C_LG_IV0224 | hypothetical protein (348 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.XII.1370.1 | hypothetical protein (314 aa) | • | 0.499 | |||||||
 | gw1.IV.3052.1 | hypothetical protein (207 aa) | • | 0.493 | |||||||
 | gw1.5330.2.1 | annotation not avaliable (237 aa) | • | 0.493 | |||||||
 | eugene3.00140830 | hypothetical protein (166 aa) | • | 0.492 | |||||||
 | estExt_Genewise1_v1.C_LG_II1951 | hypothetical protein (332 aa) | • | 0.492 | |||||||
 | gw1.X.5093.1 | hypothetical protein (378 aa) | • | 0.490 | |||||||
 | gw1.XII.1842.1 | hypothetical protein (346 aa) | • | 0.489 | |||||||
 | gw1.IX.47.1 | hypothetical protein (385 aa) | • | 0.488 | |||||||
 | gw1.VIII.402.1 | hypothetical protein (356 aa) | • | 0.487 | |||||||
 | eugene3.00030383 | hypothetical protein (239 aa) | • | 0.486 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 203 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ F+ D L SGDGT+ V +L + + + V +G + GS T
Sbjct: 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT 74
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS-ENGLISLVGILPNRIIQPIA 119
+ L+ +C G + V ++ + R+++ S + I + + + + +
Sbjct: 75 IRLWDLE-TGECVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132
Query: 120 EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153
H++ + S+A S D F+ S S D +KLWDL
Sbjct: 133 GHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLR 165
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
+ +S DGT+ + +LR E+ SV +G K++ S GT+ L+
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD-LST 208
Query: 70 KDCSDRFVGLSPNSVDALLKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIES 128
C G N V+++ + ++ GSE+G I + + +Q ++ H+ + S
Sbjct: 209 GKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-SVTS 266
Query: 129 LALSHDRKFLGSISHDSMLKLWD 151
LA S D K L S S D +++WD
Sbjct: 267 LAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVL 62
AD L S D T+ + +L + + ++SV +GR + S+ T+
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118
Query: 63 LYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEH 121
++ K C G + + V+++ + + S++G I L + + + + H
Sbjct: 119 VWDVETGK-CLTTLRGHT-DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176
Query: 122 SEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
+ + S+A S D + L S S D +KLWDL
Sbjct: 177 TG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69
L +S D T+ V ++ T + + SV +G V SQ GT+ L+
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167
Query: 70 KDCSDRFVGLSP--NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127
K C G + NSV D +++++ S +G I L + + + + H E +
Sbjct: 168 K-CVATLTGHTGEVNSVAFSP--DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH-ENGVN 223
Query: 128 SLALSHDRKFLGSISHDSMLKLWDLD 153
S+A S D L S S D +++WDL
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDLR 249
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (102), Expect = 2e-05
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Query: 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGY 68
G+S DGT+ + +LR + + ++S+ +G + GS GT+ L+
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230
Query: 69 FKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES 128
K G S + V + D + +GS +G I L + + + + S
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Query: 129 LALSHDRKFLGSISHDSMLKLWDLD 153
+A S D K L S S D ++LWDL+
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLE 314
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 203 | |||
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.98 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.94 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.94 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.94 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.93 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.92 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.92 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.92 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.91 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.91 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.91 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.91 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.91 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.9 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.89 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.89 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.89 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.89 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.89 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.88 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.88 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.88 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.88 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.88 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.88 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.87 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.87 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.87 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.87 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.87 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.86 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.85 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.85 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.84 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.84 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.84 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.84 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.84 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.83 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.82 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.82 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.82 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.81 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.81 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.81 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.8 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.8 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.79 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.79 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.78 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.78 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.78 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.77 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.77 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.77 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.76 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.75 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.74 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.74 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.73 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.73 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.73 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.72 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.72 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.72 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.72 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.71 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.71 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.71 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.71 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.7 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.7 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.69 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.69 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.68 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.67 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.67 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.66 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.66 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.65 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.65 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.64 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.63 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.62 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.62 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.61 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.61 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.61 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.6 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.58 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.57 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.56 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.55 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.54 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.54 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.54 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.53 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.53 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.53 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.52 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.52 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.52 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.51 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.5 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.49 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.47 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.46 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.46 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.46 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.46 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.46 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.45 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.44 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.42 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.41 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.4 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.4 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.4 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.37 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.37 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.36 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.36 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.35 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.34 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.3 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.29 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.29 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.27 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.27 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.26 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.25 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.25 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.24 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.24 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.24 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.24 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.2 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.2 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.2 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.2 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.19 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.18 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.15 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.14 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.11 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.1 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.06 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.05 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.05 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.05 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.02 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.01 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.01 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.99 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.98 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.98 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.96 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.93 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.91 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.9 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.9 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.9 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.88 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.88 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.88 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.87 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.83 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.83 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 98.81 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.79 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.79 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.78 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.78 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.77 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.72 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.67 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.66 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.63 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.61 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.59 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.57 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.56 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.56 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.53 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.52 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.5 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.5 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.49 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.48 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.48 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.48 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.47 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.47 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.46 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.46 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.46 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.43 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.43 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.4 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.4 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.4 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.39 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.37 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.36 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.35 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.35 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.3 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.27 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.24 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.24 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.2 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.16 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.16 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.15 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.12 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.09 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 98.08 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.01 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.0 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.0 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.99 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.98 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.98 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.9 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.9 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.89 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.88 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.87 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.87 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.79 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.76 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.73 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.73 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.69 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.64 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.63 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.62 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.58 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.56 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.55 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.5 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.41 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.37 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.36 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.34 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 97.34 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.27 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.27 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.23 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.23 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.22 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.19 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.15 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.06 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.06 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.05 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.03 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.03 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.02 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.01 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.01 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.0 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.98 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.93 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 96.91 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.91 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.88 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.87 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.83 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.78 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.74 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.73 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.72 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.57 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.51 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.47 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.36 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.35 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.29 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.29 | |
| PRK10115 | 686 | protease 2; Provisional | 96.24 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.15 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.09 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.9 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.86 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.84 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.79 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.77 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.73 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.68 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.66 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.61 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.51 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.38 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.26 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.12 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.08 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.07 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.01 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.0 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.89 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 94.88 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.87 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.74 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.52 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.44 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.42 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.4 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.39 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.3 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.15 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.11 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 93.75 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 93.71 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.52 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 93.51 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.49 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 93.31 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 93.2 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 93.12 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 93.11 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.1 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 92.85 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.84 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 92.74 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.66 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 92.43 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.23 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 91.99 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 91.76 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 91.36 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.29 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.92 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.84 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 90.81 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 90.76 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 90.73 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 90.64 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.44 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 89.27 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 89.1 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 88.9 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 88.73 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 88.54 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 87.9 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 87.66 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 87.55 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 86.94 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 86.91 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 86.08 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 85.78 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 85.74 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 85.57 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 85.39 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 85.11 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 85.03 | |
| PRK10115 | 686 | protease 2; Provisional | 84.95 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 84.93 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 84.42 | |
| PLN02193 | 470 | nitrile-specifier protein | 84.36 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 84.16 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 83.9 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 83.82 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 83.64 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 83.64 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 82.67 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 82.08 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 81.71 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 81.45 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 81.36 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 80.28 |
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-31 Score=208.04 Aligned_cols=157 Identities=22% Similarity=0.279 Sum_probs=148.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
..|+|+.++|++++.|+++|+|.+.+..++....+|..+|+.+.|+|.|.+|++++.|++.++|.... ..+++.+.+ |
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlRifag-h 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLRIFAG-H 534 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchhhhcc-c
Confidence 36999999999999999999999999999999999999999999999999999999999999999975 578889999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
-..+.|+ |+|+..|+++|+.|.+|++||+.+|..+..+.+|.. +|.+++|+|+|++|++|+.|+.|.+||+.++..-.
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh
Confidence 9999999 999999999999999999999999999999999966 99999999999999999999999999999976543
Q ss_pred C
Q 028806 160 G 160 (203)
Q Consensus 160 ~ 160 (203)
.
T Consensus 614 ~ 614 (707)
T KOG0263|consen 614 Q 614 (707)
T ss_pred h
Confidence 3
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-32 Score=198.50 Aligned_cols=159 Identities=23% Similarity=0.195 Sum_probs=146.3
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+.|+|. +..||+|+.||++++|++.+..++..+++|..+|..++|+|+|++|.+++.|.+-++||+.+ +..+....+
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-k~ElL~QEG 301 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-KSELLLQEG 301 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccccc-chhhHhhcc
Confidence 468897 56899999999999999999899999999999999999999999999999999999999986 455666788
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...|.++ |+|+|.++++|+.|..-+|||+++|.++..+.+|.. +|.+|.|+|+|..||+|+.|++++|||++...+
T Consensus 302 -Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 302 -HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred -cccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 99999999 999999999999999999999999999999999977 899999999999999999999999999998776
Q ss_pred CCCCC
Q 028806 158 GSGNN 162 (203)
Q Consensus 158 ~~~~~ 162 (203)
-....
T Consensus 380 ly~ip 384 (459)
T KOG0272|consen 380 LYTIP 384 (459)
T ss_pred ceecc
Confidence 54433
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=190.52 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=142.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|+|..|++|+.|.++|+||+.+..+..+.++|...|.+++|+|||+.|++|+.||+|++||..+.+.....+.+ |
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g-H 199 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG-H 199 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC-c
Confidence 469999999999999999999999999999999999999999999999999999999999999999877777889999 9
Q ss_pred CCceeEE-Eee-----CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 81 PNSVDAL-LKL-----DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...|.++ |.| ..+++++++.||.|+|||+..+.++..+.+|+. +|+|+.|-.+ .+|++++.|++|++|+...
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccc
Confidence 9999999 744 678999999999999999999999999999976 8999999655 4899999999999999877
Q ss_pred ccc
Q 028806 155 ILK 157 (203)
Q Consensus 155 ~~~ 157 (203)
+..
T Consensus 278 G~~ 280 (480)
T KOG0271|consen 278 GKL 280 (480)
T ss_pred hhH
Confidence 543
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=194.81 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=148.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|+|++|++++.|.+-++||+.++..+...++|...|.+++|+|||.++++|+.|..-+|||+++ +.++..+.+ |
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~g-H 344 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAG-H 344 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecc-c
Confidence 58999999999999999999999999988888899999999999999999999999999999999996 688889999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+|..+ |+|+|..|++|+.|++++|||++...++.++.+|.. -|+.+.|+| .|.+|++++.|++++||..++.++-
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 9999999 999999999999999999999999999999999976 799999999 7789999999999999999988876
Q ss_pred CCC
Q 028806 159 SGN 161 (203)
Q Consensus 159 ~~~ 161 (203)
...
T Consensus 424 ksL 426 (459)
T KOG0272|consen 424 KSL 426 (459)
T ss_pred hhh
Confidence 543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=176.24 Aligned_cols=157 Identities=19% Similarity=0.248 Sum_probs=141.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++.+++|++.++++.|+++++||+.+++..+.+.+|..-|.+++|+++.+.+++|+.|.+|++|++. +.+..++.. .
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~--g~ck~t~~~-~ 145 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL--GVCKYTIHE-D 145 (315)
T ss_pred eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec--ccEEEEEec-C
Confidence 3578999999999999999999999999999999999999999999999999999999999999986 455555543 3
Q ss_pred --CCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 81 --PNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 81 --~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
...|.|+ |+|+ ..+|++++.|++|++||+++.+....+.+|.. .++.++++|||..+++|+.||.+.+||++.+
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 6789999 9997 78999999999999999999999999999976 7999999999999999999999999999988
Q ss_pred ccCCCC
Q 028806 156 LKGSGN 161 (203)
Q Consensus 156 ~~~~~~ 161 (203)
..-...
T Consensus 225 k~lysl 230 (315)
T KOG0279|consen 225 KNLYSL 230 (315)
T ss_pred ceeEec
Confidence 775443
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=200.56 Aligned_cols=155 Identities=24% Similarity=0.329 Sum_probs=146.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
+.|+|-|-++|+++.|++.++|......+++.+.+|-+-|.|+.|+|+..++++|+.|.++++||+.+ +..++.|.+ |
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~G-H 576 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTG-H 576 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecC-C
Confidence 46999999999999999999999999899999999999999999999999999999999999999975 688999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.++|.++ |+|+|.+|++|+.||.|.+||+.+++.+..+.+|++ .|.++.|+.+|..||+++.|.+|++||+......
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999 999999999999999999999999999999999965 8999999999999999999999999999765544
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=185.75 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=133.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE-EEeecCCccceEEEEEee-----CCCEEEEecCCCeEEEEEcCCc-----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF----- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~----- 69 (203)
++|+|||+.||+|+.||+|++||..+++. ...+.+|...|++++|.| ..++|++++.||.++|||+...
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 57999999999999999999999988755 467888999999999976 3456777777777777776421
Q ss_pred --------------------------------------------------------------------------------
Q 028806 70 -------------------------------------------------------------------------------- 69 (203)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (203)
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence
Q ss_pred ----------------------------------cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028806 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
.+++..+.+ |...|..+ |+|++++|++++-|..|++|+.++|+.
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg-Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG-HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc-hhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 011112234 56677888 999999999999999999999999999
Q ss_pred eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCC
Q 028806 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 115 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (203)
+.++++|-. +|+.++|+.|.++|++|+.|.++++|++++....+...
T Consensus 402 lasfRGHv~-~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 402 LASFRGHVA-AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred hhhhhhccc-eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 999999966 89999999999999999999999999999988776655
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-28 Score=189.76 Aligned_cols=158 Identities=25% Similarity=0.390 Sum_probs=144.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc-CCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++|+|+++++++++.|++|+||++ ..+..++++.+|...|++++|+|+++.+++|+.|++|++||+++ +.+...+.+
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~- 286 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRKLKG- 286 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEeeec-
Confidence 579999999999999999999999 45688899999999999999999999999999999999999986 788999999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCC-ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|...|.++ |++++.+|++++.|+.|++||+.++. ++..+..+... +++++.|+|++.+|++++.|+.+++||+..+
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999 99999999999999999999999998 56777777553 5899999999999999999999999999977
Q ss_pred ccCCC
Q 028806 156 LKGSG 160 (203)
Q Consensus 156 ~~~~~ 160 (203)
.....
T Consensus 367 ~~~~~ 371 (456)
T KOG0266|consen 367 KSVGT 371 (456)
T ss_pred cceee
Confidence 65433
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=189.26 Aligned_cols=155 Identities=21% Similarity=0.360 Sum_probs=145.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+.|+|+|+.+++++.++.+++|+..... ....+.+|...|..++|+|++.++++++.|+++++||+...+..++++.+
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 3689999999999999999999997766 66777889999999999999999999999999999999655678899999
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...|+++ |+|+++.+++|+.|+.|++||++++++...+.+|.+ .|.+++|++++++|++++.|+.|++||+.++..
T Consensus 245 -H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 245 -HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred -CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 99999999 999999999999999999999999999999999976 899999999999999999999999999999884
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=172.24 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=145.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
+++.|-..++++|+.|++|+|||+.++++..++.+|...|..+++++-..+|++++.|+.|+.||+.. .+.++.+.+ |
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~-nkvIR~YhG-H 234 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY-NKVIRHYHG-H 234 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh-hhhHHHhcc-c
Confidence 46788888999999999999999999999999999999999999999999999999999999999974 577888899 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-..|+|+ .+|.-..|++|+.|.+++|||+++...+..+.+|.. +|..+.+.|-...+++|+.|++|++||++.+...
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM 312 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCceEEecCCceEEEeeeccCcee
Confidence 9999999 899999999999999999999999999999999966 8999999998889999999999999999887643
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=167.15 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=144.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|-|.|.+|+++++|.+|+.|++.++.++.++.+|...|..++.+.||.++++++.|.++++|-+.+ +.+...+.. |
T Consensus 199 V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~-h 276 (406)
T KOG0295|consen 199 VFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCKAELRE-H 276 (406)
T ss_pred EEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc-chhhhhhhc-c
Confidence 35778999999999999999999999999999999999999999999999999999999999999974 567777888 8
Q ss_pred CCceeEE-EeeC---------------CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 81 PNSVDAL-LKLD---------------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 81 ~~~v~~~-~~~~---------------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
..++-++ |-|. +.++.+++.|++|++||+.++.++.++.+|.. .|..++|+|.|+||+++..|
T Consensus 277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecC
Confidence 8888888 6442 25899999999999999999999999999955 89999999999999999999
Q ss_pred CcEEEEeCCCcccCCCCC
Q 028806 145 SMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 145 ~~i~iwd~~~~~~~~~~~ 162 (203)
+++++||+.+.++....+
T Consensus 356 ktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 356 KTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred CcEEEEEeccceeeeccC
Confidence 999999999998876554
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-26 Score=178.15 Aligned_cols=154 Identities=13% Similarity=0.227 Sum_probs=133.2
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
++|+| ++++|++|+.|++|++|++.++ ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.. +.
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-g~ 159 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-GK 159 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-Ce
Confidence 47999 8899999999999999999764 3456788999999999999975 6899999999999999975 46
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe----CCCc
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS----HDSM 146 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----~d~~ 146 (203)
.+..+.. |...|.++ |+|++.+|++++.|+.|++||+++++.+..+..|....+..+.|.+++..|++++ .|+.
T Consensus 160 ~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 160 AVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred EEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 6777888 88999999 9999999999999999999999999999888888653455678999888877655 4789
Q ss_pred EEEEeCCCcc
Q 028806 147 LKLWDLDDIL 156 (203)
Q Consensus 147 i~iwd~~~~~ 156 (203)
|++||+++..
T Consensus 239 VklWDlr~~~ 248 (493)
T PTZ00421 239 IMLWDTRKMA 248 (493)
T ss_pred EEEEeCCCCC
Confidence 9999998764
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=160.52 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=132.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
++|+||.+.|++|+.|.+|.+|+.-........... ...|.|+.|+|+ ..++++++.|+++++||+++ .+....+.
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~ 189 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFI 189 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccc
Confidence 579999999999999999999998876544443333 789999999997 67899999999999999985 57778888
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+ |.+.++.+ ++|||.++++|+.+|.+.+||++.++.+..+... . .|.+++|+|+.-.|+.+. +..|+|||+.+..
T Consensus 190 g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~-~v~sl~fspnrywL~~at-~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 190 G-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-D-IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKA 265 (315)
T ss_pred c-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-C-eEeeEEecCCceeEeecc-CCceEEEeccchh
Confidence 9 99999999 9999999999999999999999999998888665 4 799999999976666554 5569999998876
Q ss_pred cCCC
Q 028806 157 KGSG 160 (203)
Q Consensus 157 ~~~~ 160 (203)
.-..
T Consensus 266 ~v~~ 269 (315)
T KOG0279|consen 266 VVEE 269 (315)
T ss_pred hhhh
Confidence 6543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=179.26 Aligned_cols=153 Identities=18% Similarity=0.305 Sum_probs=137.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|++||||++||+|+.||.|+|||...+-+..++..|...|+.+.|+..++.+++++-||+|+.||+.. ....++|....
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~ 434 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPE 434 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999974 57777887612
Q ss_pred CCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.-...|+ ..|.|..+.+|+.|. .|.+|++++|+.+-.+.+|.+ ||.+++|+|.+..|++++.|.+|++||+-..
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-PVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-cceeeEEccccCeEEeccccceEEEEEeecc
Confidence 2334556 688999999999875 599999999999999999955 9999999999999999999999999998655
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=171.79 Aligned_cols=161 Identities=18% Similarity=0.313 Sum_probs=146.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--------CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 73 (203)
.|||||++|++|+-||.|.||+..+|+....++ -+..+|.|+.|+.|...|++|+.||.|++|.+.+ +.++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-GQCL 298 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-chHH
Confidence 599999999999999999999999987655443 2567899999999999999999999999999985 7899
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
+.|..+|...|+|+ |+.++..+++++.|.++++.-+.+|++++.+++|+. -|+...|.++|.++++++.||+|++|+.
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~ 377 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHHIISASSDGTVKVWHG 377 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCeEEEecCCccEEEecC
Confidence 99974499999999 999999999999999999999999999999999976 6999999999999999999999999999
Q ss_pred CCcccCCCCCCC
Q 028806 153 DDILKGSGNNIS 164 (203)
Q Consensus 153 ~~~~~~~~~~~~ 164 (203)
.+..+-..++..
T Consensus 378 KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 378 KTTECLSTFKPL 389 (508)
T ss_pred cchhhhhhccCC
Confidence 998887766544
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=158.09 Aligned_cols=155 Identities=22% Similarity=0.291 Sum_probs=126.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc----------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---------- 70 (203)
+.|..+|+.+++|+.||+++|||++...+.+.+ .+.++|+++..+|+...|+++..+|.|++||+....
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 357889999999999999999999986554444 456889999999988888888889999999886320
Q ss_pred --------------------------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 71 --------------------------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 71 --------------------------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
.++..+.. |..-+..+ ++|++++|++++.|.+++||+.++
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 11222334 55555555 999999999999999999999988
Q ss_pred C-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 112 N-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 112 ~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
. +....+.+|.. .++..+|+.+++||++++.|+..++|+++.++..
T Consensus 247 ~~kle~~l~gh~r-WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 247 FFKLELVLTGHQR-WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceeeEEEeecCCc-eEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 7 66677888854 8999999999999999999999999999988743
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-26 Score=159.73 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=143.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
++|+|.|+++|+|+-|+...||++.+. +..+.+.+|.+.+.++.|.+| ..|++++.|.+..+||+.+ +....
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~-g~~~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET-GQQTQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc-ceEEE
Confidence 379999999999999999999999854 445678899999999999874 5788999999999999985 68888
Q ss_pred eeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.|.+ |.+.|.++ ++| +++.+++|+-|...++||++.+.+.+++.+|.. .|.++.|.|+|.-+++|+.|++.++||+
T Consensus 181 ~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 181 VFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred EecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEee
Confidence 9999 99999999 899 999999999999999999999999999999954 8999999999999999999999999999
Q ss_pred CCcccCCCCC
Q 028806 153 DDILKGSGNN 162 (203)
Q Consensus 153 ~~~~~~~~~~ 162 (203)
+..++-....
T Consensus 259 RaD~~~a~ys 268 (343)
T KOG0286|consen 259 RADQELAVYS 268 (343)
T ss_pred cCCcEEeeec
Confidence 9977665544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-27 Score=173.54 Aligned_cols=153 Identities=14% Similarity=0.248 Sum_probs=137.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
|.|++++.++++|..+|.|++|+..-... ..+..| ...|++++|+|....|++++.||+|+|||.... .....+.+
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-kee~vL~G- 220 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-KEERVLRG- 220 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchhhh-HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-chhheecc-
Confidence 57999999999999999999999775543 445544 489999999999999999999999999999753 45566788
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...|.++ |+|.-.+|++++.|..|++||.+++.++.++..|.. .|..+.|+|++++|++++.|..+++||++++..
T Consensus 221 HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence 99999999 999999999999999999999999999999999966 899999999999999999999999999996643
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=154.72 Aligned_cols=149 Identities=15% Similarity=0.249 Sum_probs=132.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cceeeeccCCCceeE
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~v~~ 86 (203)
-+|++++.|.+||+|...+|.+..+++...+.|..+.+.|+++.|++++. ..|++||+++... ++..+.+ |...|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~-h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEG-HTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEec-cCCceEE
Confidence 47899999999999999999999999988999999999999999998875 5799999986554 7889999 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+ |..+|+++++|+.||+++|||++.-.+...+... .+|.++..+|++..|+++..+|.|++||+.+.....+
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 9 9999999999999999999999985555555433 4899999999999999999999999999988765544
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=156.16 Aligned_cols=161 Identities=20% Similarity=0.243 Sum_probs=144.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc--c---cccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--K---DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~---~~~~~ 75 (203)
|.|++|.++|++++.||.+.|||.-+......++-....|..++|+|.++++++|+-|+...||++.+. . +..+.
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeee
Confidence 469999999999999999999999988777888878899999999999999999999999999999743 1 33456
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~ 153 (203)
+.+ |.+.+.++ |-+ ...|++++.|.+..+||+++++.+..+.+|.. .|.++.++| +++.+++|+.|+..++||++
T Consensus 141 l~g-HtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~g-DV~slsl~p~~~ntFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 141 LAG-HTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTG-DVMSLSLSPSDGNTFVSGGCDKSAKLWDVR 217 (343)
T ss_pred ecC-ccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcc-cEEEEecCCCCCCeEEecccccceeeeecc
Confidence 788 99999999 655 67889999999999999999999999999976 899999999 99999999999999999999
Q ss_pred CcccCCCCCCC
Q 028806 154 DILKGSGNNIS 164 (203)
Q Consensus 154 ~~~~~~~~~~~ 164 (203)
.+...+.+...
T Consensus 218 ~~~c~qtF~gh 228 (343)
T KOG0286|consen 218 SGQCVQTFEGH 228 (343)
T ss_pred CcceeEeeccc
Confidence 99988877654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=165.97 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=136.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE-----------------------------------------EeecCCccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ-----------------------------------------TRSEFSEEE 39 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~-----------------------------------------~~~~~~~~~ 39 (203)
|.|+..|.+|++++-|+++.+||..++... .++.+|...
T Consensus 282 lKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~ 361 (524)
T KOG0273|consen 282 LKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE 361 (524)
T ss_pred EEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc
Confidence 468888999999999999999998654322 233568899
Q ss_pred eEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCC---------CEEEEEcCCCcEEEEEc
Q 028806 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDE---------DRVITGSENGLISLVGI 109 (203)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~---------~~l~~~~~d~~i~~~d~ 109 (203)
|.++.|+|.+.+|++++.|+++++|.... ......+.. |...|+.+ |+|+| ..+++++.|++|++||+
T Consensus 362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~-Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 362 VNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQA-HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred eEEEEECCCCceEEEecCCCeeEeeecCC-Ccchhhhhh-hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence 99999999999999999999999999864 567788888 99899999 88865 46889999999999999
Q ss_pred cCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 110 LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..+.++..+..|.. +|++++|+|+|+|||+|+.||.|.+|+++++..-+
T Consensus 440 ~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 440 ESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred cCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 99999999999966 99999999999999999999999999998876543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-25 Score=153.43 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=137.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC--ccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~~~~~~ 76 (203)
++|+|.|++|++++.|.++.||.-..+ +++..+++|+..|-+++|+++|++|++++.|..|-+|.+.. .-.+...+
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 589999999999999999999987654 67889999999999999999999999999999999999973 23567788
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.. |...|-.+ |+|...+|++++.|.+|++|.-.. -.+.+++.+|.. .|++++|+|.|..|++++.|++++||-.
T Consensus 147 ~~-HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 147 QE-HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cc-ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeee
Confidence 88 99999988 999999999999999999998662 357899999966 7999999999999999999999999986
Q ss_pred CCcc
Q 028806 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
.+..
T Consensus 225 ~~~~ 228 (312)
T KOG0645|consen 225 YTDL 228 (312)
T ss_pred ccCc
Confidence 5443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=167.49 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=142.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|||+...+++++.||+|+|||....+....+.+|.--|.+++|+|.-.++++++.|..|++||.++ +.++.++.. |
T Consensus 186 lafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~-H 263 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHG-H 263 (464)
T ss_pred eccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhh-c
Confidence 68999999999999999999999998887788899999999999999999999999999999999985 789999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...|..+ |+|++++|++++.|..++++|+++.+.+..+++|.. .++++.|+| ...+|.+|+.||.|..|.+....+
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-hheeeccccccccceeeccCCCceEEEecccccc
Confidence 9999999 999999999999999999999999999999999977 799999999 567888999999999999874433
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=178.88 Aligned_cols=159 Identities=14% Similarity=0.271 Sum_probs=149.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|....|+++-..|.|++||.+-+.++..+..|.++|+.++|+|...+|++|+.|-.|++|+... .+++.++.+ |
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL~G-H 92 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTLLG-H 92 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhhcc-c
Confidence 57999999999999999999999999999999999999999999999999999999999999999974 689999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
-..|+.+ |++.-.+|++++.|.+|+||+..+++++..+++|.. -|+|..|+|....+++++.|.+|+|||+.....++
T Consensus 93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 9999999 899999999999999999999999999999999966 79999999999999999999999999998887765
Q ss_pred CCC
Q 028806 160 GNN 162 (203)
Q Consensus 160 ~~~ 162 (203)
...
T Consensus 172 ~~p 174 (1202)
T KOG0292|consen 172 KAP 174 (1202)
T ss_pred CCC
Confidence 433
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=169.01 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=144.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++++|+.++||+|+.|.+.+||+++......++.+|...|+++.|+|..+.++|++.|.+|++|.+.+ ..++.+|.+ |
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eG-H 546 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEG-H 546 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecC-c
Confidence 46899999999999999999999999999999999999999999999999999999999999999985 689999999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...|..+ |-.+++.|++++.||-|++|++.++.++.++..|.+ .|++++.+|....+++|+.||.|.+|.=.+..
T Consensus 547 ~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 547 TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-RVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc-eeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 9999888 999999999999999999999999999999999977 89999999999999999999999999654443
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-24 Score=148.30 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=131.9
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCC---eEEEee-cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC-ccccce
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKN---TVQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSD 74 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~ 74 (203)
++|+|- |..||+++.|..|++|+...+ .+...+ .+|...|++++|+|.|++|++++.|.++.+|.-.. .-+++.
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEe
Confidence 478998 889999999999999998842 333333 36889999999999999999999999999997532 226788
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC---ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
++.+ |...|-++ |+++|.+|++++.|..|.||.+..+ ++...++.|+. .|..+.|+|....|++++.|++|++|
T Consensus 100 ~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~dlL~S~SYDnTIk~~ 177 (312)
T KOG0645|consen 100 TLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTEDLLFSCSYDNTIKVY 177 (312)
T ss_pred eeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCcceeEEeccCCeEEEE
Confidence 8999 99999999 9999999999999999999998744 56788999977 89999999999999999999999999
Q ss_pred eCC
Q 028806 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
.-.
T Consensus 178 ~~~ 180 (312)
T KOG0645|consen 178 RDE 180 (312)
T ss_pred eec
Confidence 765
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=160.25 Aligned_cols=149 Identities=15% Similarity=0.206 Sum_probs=138.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC---------CEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG---------RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
|.|+|.+.+|++++.|++++||+.........+..|...|..+.|+|.+ ..+++++.|++|++||+. .+.
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~-~gv 443 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE-SGV 443 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc-CCc
Confidence 4699999999999999999999998888888999999999999999965 378899999999999997 478
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
++..|.. |..+|+++ |+|+|.++++|+.||.|.+|+.++++..+.+.+. . .|..++|+.+|.+|..+..|+.+++.
T Consensus 444 ~i~~f~k-H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~-~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 444 PIHTLMK-HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-G-GIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred eeEeecc-CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-C-eEEEEEEcCCCCEEEEEecCCCceEE
Confidence 8999988 99999999 9999999999999999999999999999999876 4 59999999999999999999999999
Q ss_pred eCC
Q 028806 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
|++
T Consensus 521 dlr 523 (524)
T KOG0273|consen 521 DLR 523 (524)
T ss_pred Eec
Confidence 986
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=164.94 Aligned_cols=154 Identities=16% Similarity=0.125 Sum_probs=128.0
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEE-------------EeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-------------TRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~ 68 (203)
.++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|++|++||+..
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 4566666777777777777775543222 13567899999999999 889999999999999999964
Q ss_pred cc------ccceeeeccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEE
Q 028806 69 FK------DCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 69 ~~------~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
.+ .++..+.+ |...|.++ |+|++ ++|++++.|+.|++||+++++.+..+..|.. .|.+++|+|++.+|++
T Consensus 108 ~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-~V~sla~spdG~lLat 185 (493)
T PTZ00421 108 EGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-QITSLEWNLDGSLLCT 185 (493)
T ss_pred CccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-ceEEEEEECCCCEEEE
Confidence 32 24567788 99999999 99975 6899999999999999999999988988866 8999999999999999
Q ss_pred EeCCCcEEEEeCCCcccC
Q 028806 141 ISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~~ 158 (203)
++.|+.|++||++++...
T Consensus 186 gs~Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 186 TSKDKKLNIIDPRDGTIV 203 (493)
T ss_pred ecCCCEEEEEECCCCcEE
Confidence 999999999999987643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=166.06 Aligned_cols=151 Identities=14% Similarity=0.146 Sum_probs=123.6
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCe--------EEEeecCCccceEEEEEeeCCCE-EEEecCCCeEEEEEcCCcc
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~ 70 (203)
++|+|+ +++|++|+.|++|+||++.++. ++..+.+|...|.+++|+|++.. |++++.|+.|++||+...
T Consensus 80 lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg- 158 (568)
T PTZ00420 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE- 158 (568)
T ss_pred EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-
Confidence 479996 7899999999999999997532 23467789999999999998875 568899999999999853
Q ss_pred ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceE-----EEEEeCCCCeEEEEeCC
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-----SLALSHDRKFLGSISHD 144 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~-----~i~~~~~~~~l~~~~~d 144 (203)
.....+. +...+.++ |+|+|.+|++++.|+.|++||+++++.+..+.+|.+ .+. ...|++++.+|++++.+
T Consensus 159 ~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-~~~s~~v~~~~fs~d~~~IlTtG~d 235 (568)
T PTZ00420 159 KRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG-GKNTKNIWIDGLGGDDNYILSTGFS 235 (568)
T ss_pred cEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccC-CceeEEEEeeeEcCCCCEEEEEEcC
Confidence 4444443 45678999 999999999999999999999999999999998865 332 23456899999998866
Q ss_pred C----cEEEEeCCCc
Q 028806 145 S----MLKLWDLDDI 155 (203)
Q Consensus 145 ~----~i~iwd~~~~ 155 (203)
+ .|+|||+++.
T Consensus 236 ~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 236 KNNMREMKLWDLKNT 250 (568)
T ss_pred CCCccEEEEEECCCC
Confidence 4 7999999864
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=171.47 Aligned_cols=154 Identities=20% Similarity=0.250 Sum_probs=130.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--------------------------------C---------------------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------------------------------N--------------------- 27 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~--------------------------------~--------------------- 27 (203)
|.||+||+|||+|+.|+.|+||.+.. .
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 57999999999999999999998754 0
Q ss_pred -------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-Eee-CCCEEEEE
Q 028806 28 -------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITG 98 (203)
Q Consensus 28 -------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~ 98 (203)
+++..+.+|.+.|..|.|+.+ ++|++++.|.+|++|++. ...++..|. |...|+|+ |+| |.+|+++|
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~-~~~CL~~F~--HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPG-RKECLKVFS--HNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred ccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCC-CcceeeEEe--cCCeeEEEEecccCCCcEeec
Confidence 011233568888999999964 589999999999999997 468888887 89999999 998 78999999
Q ss_pred cCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 99 SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 99 ~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+-||.|+||++...+...-...+ + -|++++|.|+|++.+.|+.+|.+++|++........
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~Dl~-~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWNDLR-D-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred ccccceEEeecCcCeeEeehhhh-h-hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 99999999999876665444444 4 699999999999999999999999999988776654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=165.05 Aligned_cols=157 Identities=15% Similarity=0.205 Sum_probs=142.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|+.+|...++++++.|-+|++|+.+.+ .+.+++++|..-|.+++|+| |.+.+++++-|++|++|.+.. ..+..++.+
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g 181 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG 181 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec
Confidence 467899999999999999999999864 77899999999999999999 678999999999999999974 577788999
Q ss_pred cCCCceeEE-Eee--CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|...|.|+ +-+ +-.+|++|+.|..|+|||.++..+++++.+|+. .|..+.|+|.-.++++|+.||+++||...+.
T Consensus 182 -HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 182 -HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred -cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 99999999 644 557999999999999999999999999999977 8999999999999999999999999998887
Q ss_pred ccCCC
Q 028806 156 LKGSG 160 (203)
Q Consensus 156 ~~~~~ 160 (203)
..+..
T Consensus 260 ~lE~t 264 (794)
T KOG0276|consen 260 KLEKT 264 (794)
T ss_pred ehhhh
Confidence 76644
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=151.12 Aligned_cols=158 Identities=13% Similarity=0.166 Sum_probs=138.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++.+|+.+++++|+.|...++|++.++.....+.+|...|+++.|+.+|.+|++|+.+|.|+||+..+..... .+.. .
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~-~~~~-e 147 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW-KLDQ-E 147 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE-Eeec-c
Confidence 3568988999999999999999999999999999999999999999999999999999999999998654443 3332 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+-=+ |+|.+..|++|+.||.+.+|.+.++...+.+.+|.. ++++=.|.|+|+.++++..||+|++|++.++++..
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 3444445 899999999999999999999999888889999955 89999999999999999999999999999998765
Q ss_pred CC
Q 028806 160 GN 161 (203)
Q Consensus 160 ~~ 161 (203)
..
T Consensus 227 ~~ 228 (399)
T KOG0296|consen 227 KI 228 (399)
T ss_pred Ee
Confidence 43
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-25 Score=163.42 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=140.1
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCC-CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..+|..++|+++|..|++++.|+.+++||+.+ +.++..+..
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET-G~~~~~f~~ 298 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET-GQVLSRFHL 298 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc-ceEEEEEec
Confidence 35777 788899999999999999976 889999999999999999999999999999999999999986 678888874
Q ss_pred cCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...++|+ |+|++ +.+++|+.|+.|+.||+++++.++.+..|.+ +|..+.|-++++++++.+.|++++||+.+.+-
T Consensus 299 --~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~rFissSDdks~riWe~~~~v 375 (503)
T KOG0282|consen 299 --DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRRFISSSDDKSVRIWENRIPV 375 (503)
T ss_pred --CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence 6678888 99988 8899999999999999999999999988866 89999999999999999999999999988775
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
+.
T Consensus 376 ~i 377 (503)
T KOG0282|consen 376 PI 377 (503)
T ss_pred cc
Confidence 44
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=147.95 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=133.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC-CCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+.|+|+|.++|+|+.|..|.+|+.. ..+....+++|.+.|..+.|.++++.+++++.|.+++.||+.+ ++....++.
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t-G~~~rk~k~- 130 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET-GKRIRKHKG- 130 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc-ceeeehhcc-
Confidence 3699999999999999999999965 4455678889999999999999999999999999999999985 678888888
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 80 SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...+..+ -.. ...++.+++.|+++++||++....++++.... .++++.|...+..+.+|+-|+.|++||++....
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky--qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY--QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce--eEEEEEecccccceeeccccCceeeeccccCcc
Confidence 88888888 333 34456678889999999999999998887653 699999999999999999999999999976654
Q ss_pred C
Q 028806 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 209 ~ 209 (338)
T KOG0265|consen 209 L 209 (338)
T ss_pred e
Confidence 4
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=160.69 Aligned_cols=144 Identities=9% Similarity=0.059 Sum_probs=121.8
Q ss_pred EcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccc-------cceeeeccCCCce
Q 028806 13 TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD-------CSDRFVGLSPNSV 84 (203)
Q Consensus 13 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~-------~~~~~~~~~~~~v 84 (203)
|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+..... ++..+.+ |...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence 445678999998777777888999999999999996 78999999999999999974322 2345677 88999
Q ss_pred eEE-EeeCCCEE-EEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 85 DAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 85 ~~~-~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
.++ |+|++..+ ++++.|+.|++||+++++.+..+..+ . .|.+++|+|+|.+|++++.|+.|+|||++++....
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~-~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-K-KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-C-cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 999 99998765 68899999999999998877777533 4 79999999999999999999999999999886543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=144.38 Aligned_cols=155 Identities=17% Similarity=0.264 Sum_probs=131.1
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCC-CeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
++|++.. +.+++++.||++++||+.. ..++..++.|...|.++.|++ .+..+++++.|++|++|+.. .+..+.++.
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf~ 144 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQTFN 144 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEeec
Confidence 5788865 5778889999999999753 467888999999999999998 55678888999999999986 467888999
Q ss_pred ccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCC
Q 028806 78 GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+ |...|+.. |+| .++.+++++.|+.+++||++..-....+..|. ..|.++.|+. +.+.|++++.|+.|++||+++
T Consensus 145 g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 145 G-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred C-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-ceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 9 99999998 888 57899999999999999998644334488885 4799999988 567889999999999999998
Q ss_pred cccC
Q 028806 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
....
T Consensus 223 ~r~p 226 (311)
T KOG0277|consen 223 LRTP 226 (311)
T ss_pred cccc
Confidence 7643
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=152.57 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=143.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
+++|+...||++++.|+.|+-||+..++.++...+|-+.|.+++.+|.-..|++++.|.++++||+++ ...+..+.+ |
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~~l~G-H 276 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVHVLSG-H 276 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-cceEEEecC-C
Confidence 57899999999999999999999999999999999999999999999999999999999999999996 678899999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..+|..+ +.|....+++|+.|++|++||++.|+...++..|.. .+.+++.+|....+|+++.| .|+-|++..+.-.+
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~ 354 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQ 354 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhh
Confidence 9999999 888888999999999999999999999999999866 89999999999999999877 69999998776443
Q ss_pred C
Q 028806 160 G 160 (203)
Q Consensus 160 ~ 160 (203)
.
T Consensus 355 n 355 (460)
T KOG0285|consen 355 N 355 (460)
T ss_pred c
Confidence 3
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=146.97 Aligned_cols=156 Identities=23% Similarity=0.365 Sum_probs=137.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.+|.|++|++.++.....+..|...+..+.|+|+++.+++++.++.+++|++.. ......+.. +
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~~~-~ 92 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET-GECVRTLTG-H 92 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc-ccceEEEec-c
Confidence 46899999999999999999999998877788888888999999999999999999999999999974 456667777 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+.++ |+|++.++++++.++.|.+|++++++....+..|.. .|.++.|+|++.++++++.++.|++||+++.....
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce
Confidence 8889999 899988888888899999999998888888887755 79999999998898888889999999998665443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-23 Score=146.21 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=138.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+.|.++++.|++++.|.+|+.||+++|+....++.|..-|+.+.-+.-|. ++.+++.|+++++||++. +..++++..
T Consensus 96 l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~~~- 173 (338)
T KOG0265|consen 96 LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTFEN- 173 (338)
T ss_pred eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhcccc-
Confidence 45889999999999999999999999999999999999999888544444 556788899999999984 567777653
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...++++ |..++..+++|+-|+.|++||++.+..+.++.+|.+ +|+.+..+|+|.++.+-+.|.++++||++..-+.
T Consensus 174 -kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 174 -KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred -ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 6778888 999999999999999999999999999999999977 8999999999999999999999999999887666
Q ss_pred CC
Q 028806 159 SG 160 (203)
Q Consensus 159 ~~ 160 (203)
+.
T Consensus 252 ~R 253 (338)
T KOG0265|consen 252 QR 253 (338)
T ss_pred Cc
Confidence 54
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=158.86 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=143.0
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
|-+.-+.+++|+.|..|+||+..+++.+..++.|..-|++++.+|.-.++++++.|-.|++||....-.+.++|.+ |..
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H~H 141 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-HEH 141 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-cce
Confidence 4455678999999999999999999999999999999999999999999999999999999999987788999999 999
Q ss_pred ceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCC--CCeEEEEeCCCcEEEEeCCCcccC
Q 028806 83 SVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD--RKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 83 ~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-|.++ |+| |.+.+++++-|++|+||.+.+..+..++.+|.. .|.|+.+-+- ..+|++|+.|..|+|||..+..+-
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence 99999 888 678999999999999999999999999999966 7999999874 479999999999999999887665
Q ss_pred CC
Q 028806 159 SG 160 (203)
Q Consensus 159 ~~ 160 (203)
+.
T Consensus 221 ~T 222 (794)
T KOG0276|consen 221 QT 222 (794)
T ss_pred HH
Confidence 43
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=151.12 Aligned_cols=156 Identities=15% Similarity=0.265 Sum_probs=145.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
-|+|+-..+++++.|++|++||..++++...+++|...+..++|+..|+++++++.|-.+++||......++..+.+ |.
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-h~ 193 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-HE 193 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC-cc
Confidence 36888889999999999999999999999999999999999999999999999999999999999865677888888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..|.++ |-|.|.+|++++.|.+|+.|++.++.++.++++|.+ .|..+..+.||.++++++.|.++++|-+.++++..
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~ 271 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA 271 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhh
Confidence 999999 899999999999999999999999999999999977 89999999999999999999999999999985543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=162.83 Aligned_cols=151 Identities=22% Similarity=0.267 Sum_probs=142.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
+++||||++||++--|++++||-+.+-+....+.+|.-||.|+.++||++.++||+.|.+|++|-+. .+.|...+.+ |
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd-FGDCHKS~fA-H 591 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD-FGDCHKSFFA-H 591 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc-cchhhhhhhc-c
Confidence 4689999999999999999999999998888999999999999999999999999999999999997 4788889999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...|.++ |-|....+.+++.|+.|+-||-...+.++.+.+|.. .|+|++.+|+|.++++++.|..|++|.-..
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-EVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh-eeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999 999999999999999999999988899999999966 899999999999999999999999998654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-22 Score=145.80 Aligned_cols=157 Identities=23% Similarity=0.307 Sum_probs=137.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
+.|+|++++|++++.++.|++|++.+++....+..|...+.++.|+|++.++++++.++.+.+|++.. ......+.. +
T Consensus 57 ~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~-~ 134 (289)
T cd00200 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTTLRG-H 134 (289)
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEEecc-C
Confidence 46889999999999999999999998877788888888999999999988888888899999999974 456666777 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+.++ |+|++.++++++.++.|++||+++++.+..+..|.. .+.++.|+|+++.+++++.++.|++||+++.....
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence 8889999 999999999888899999999998888888887754 79999999999999999999999999998765544
Q ss_pred C
Q 028806 160 G 160 (203)
Q Consensus 160 ~ 160 (203)
.
T Consensus 214 ~ 214 (289)
T cd00200 214 T 214 (289)
T ss_pred c
Confidence 3
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=163.52 Aligned_cols=156 Identities=18% Similarity=0.311 Sum_probs=133.3
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+.|++- ..+|++|+.||+|++||++...-..++.+....|+.++|+| .+.+|+++...|.+.+||++...++...+..
T Consensus 139 ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 139 LDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred eeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence 356664 46889999999999999998877778888888999999999 5688999999999999999988888888999
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe-EEEEe--CCCcEEEEeCCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSIS--HDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~--~d~~i~iwd~~~ 154 (203)
|.++|.|+ |+|++.+|++|+.|+.|+||++.+.+......-++..++..+.|-|..++ |++++ .|-.|+|||++.
T Consensus 219 -H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 219 -HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred -ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 99999999 99999999999999999999998766554454455568999999998765 66666 577899999988
Q ss_pred ccc
Q 028806 155 ILK 157 (203)
Q Consensus 155 ~~~ 157 (203)
...
T Consensus 298 PYI 300 (839)
T KOG0269|consen 298 PYI 300 (839)
T ss_pred ccc
Confidence 754
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-22 Score=150.76 Aligned_cols=154 Identities=17% Similarity=0.245 Sum_probs=135.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec---CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+.|||||.++++++.||.|.+||-.+++.+..+. +|.+.|.+++|+||+..|++++.|.++++||+.. ..+++++.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~ 274 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWP 274 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEee
Confidence 4699999999999999999999999999998887 8999999999999999999999999999999975 45666654
Q ss_pred c---cCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 78 G---LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~---~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
. .....+.++|. ...|++.+.+|.|.+++.....++..+.+|.. .|+++..+|++.+|++|+.||.|.-|+..+
T Consensus 275 ~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred cCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence 3 01234556664 67899999999999999999999999999976 899999999999999999999999999988
Q ss_pred cccC
Q 028806 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+.+.
T Consensus 352 g~~~ 355 (603)
T KOG0318|consen 352 GTSD 355 (603)
T ss_pred cccc
Confidence 8765
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=164.16 Aligned_cols=153 Identities=21% Similarity=0.345 Sum_probs=131.6
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCC---CeEEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceee
Q 028806 2 TFAA-DAMKLLGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
.|+. ..++||+++..|.|.+||+.. .+.+..+..|...++++.|++. .++|++|++||.|++||++. .....++
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S~~t~ 172 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKSKSTF 172 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccccccc
Confidence 4442 457899999999999999986 4556678889999999999984 47899999999999999985 4666777
Q ss_pred eccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ ....|+.+ |+| .+.+++++...|.+++||++. .++...+.+|.+ +|.|+.|+|++.+||+|+.|+.|+||+..
T Consensus 173 ~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 173 RS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCceeeecCCCccEEEEecc
Confidence 77 88899999 987 578899999999999999985 567788999966 99999999999999999999999999998
Q ss_pred Cccc
Q 028806 154 DILK 157 (203)
Q Consensus 154 ~~~~ 157 (203)
+...
T Consensus 251 ~~~~ 254 (839)
T KOG0269|consen 251 DSRA 254 (839)
T ss_pred CCCc
Confidence 6543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-22 Score=165.36 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=128.2
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|+| .+.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++++.|+.|++||+.. +..+..+..
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~- 616 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT- 616 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec-
Confidence 5666 467899999999999999999999999999999999999997 789999999999999999974 456666664
Q ss_pred CCCceeEE-E-eeCCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 80 SPNSVDAL-L-KLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~-~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+ ..+.++ | ++++.+|++|+.||.|++||++... .+..+.+|.. .|.++.|. ++.+|++++.|+.|++||++..
T Consensus 617 ~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 617 K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence 3 567778 7 4579999999999999999998765 5667788865 89999997 6789999999999999999753
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-23 Score=152.66 Aligned_cols=153 Identities=15% Similarity=0.284 Sum_probs=120.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--------- 70 (203)
+.||||.++|++|+.+..+.+||+.+|.....+. ++...+.+++|.|||..+++|+.|+.+..||+...-
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~ 354 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD 354 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc
Confidence 4799999999999999999999999998766554 345779999999999999999999999999985210
Q ss_pred ccce-------------------------------------------------------------------------eee
Q 028806 71 DCSD-------------------------------------------------------------------------RFV 77 (203)
Q Consensus 71 ~~~~-------------------------------------------------------------------------~~~ 77 (203)
+.+. .+.
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 0000 000
Q ss_pred ccCCC---ceeEEE-eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeC
Q 028806 78 GLSPN---SVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~---~v~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~ 152 (203)
+ |.. -|+++| -.+..++++|+.|+.|++|+..+|+++..+.+|.. .|.+++|+|.. ..+|+++.||+|+||-.
T Consensus 435 G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 435 G-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred c-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 1 111 123333 22446899999999999999999999999999976 89999999955 67899999999999987
Q ss_pred CCc
Q 028806 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
...
T Consensus 513 ~~~ 515 (519)
T KOG0293|consen 513 SDN 515 (519)
T ss_pred Ccc
Confidence 644
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=139.55 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=130.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.|+-+|++.++++.|.+|++|+...+.++.+..+|...|..++.+.|+..|++++.|..+.+||+.+ ++..+.+.+ |.
T Consensus 24 ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T-Gkv~Rr~rg-H~ 101 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT-GKVDRRFRG-HL 101 (307)
T ss_pred EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc-Ceeeeeccc-cc
Confidence 5788999999999999999999999999999999999999999999999999999999999999985 688999999 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--ceeeeeccCCC-----------------------------------
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSE----------------------------------- 123 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~----------------------------------- 123 (203)
..|..+ |+.+...+++|+.|..+++||-++. ++++++....+
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy 181 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY 181 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhh
Confidence 999999 9999999999999999999998753 45555433222
Q ss_pred --CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 124 --YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 124 --~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.+|++++|+++++.++.++.|++|++.|-.+++.-+.
T Consensus 182 ~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 182 FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence 2566666666666666666666666666666666433
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=141.57 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=130.0
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
.|++- ...+++++.|++|++|+...++.++++.+|...|...+|+| ..+.+++++.|+.+++||++..+..+. +..
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a- 188 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA- 188 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe-
Confidence 45553 45678889999999999998888999999999999999999 568999999999999999997766655 777
Q ss_pred CCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028806 80 SPNSVDAL-LK-LDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~-~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
|...+.++ |+ .+.+.+++|+.|+.|+.||++.- .++..+.+| +.+|+.++|+|.. ..|++++.|-+++|||...+
T Consensus 189 h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 189 HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 88889999 85 47788999999999999999864 578889999 4599999999965 67899999999999998643
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=145.68 Aligned_cols=154 Identities=16% Similarity=0.257 Sum_probs=129.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC------------C------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEE
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRK------------N------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 63 (203)
+|||||.++++|+.|..|+|+|++. + ..++++..|...|+++.|+|....|++++.|++|++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 6999999999999999999999861 1 345677789999999999999999999999999999
Q ss_pred EEcCCc--cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee---ccCCCCceEEEEEeCCCCe
Q 028806 64 YSWGYF--KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 64 wd~~~~--~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~ 137 (203)
||+... ++..+.|. ...+++++ |+|.|.+++.|.....+++||+.+.++.... ..|++ .|+++.+++.+++
T Consensus 199 FDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~-ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG-AITQVRYSSTGSL 275 (430)
T ss_pred EecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc-ceeEEEecCCccE
Confidence 999632 12223333 46789999 9999999999999999999999998876443 34544 8999999999999
Q ss_pred EEEEeCCCcEEEEeCCCcccC
Q 028806 138 LGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.++++.||.|++||--+..+.
T Consensus 276 YvTaSkDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCV 296 (430)
T ss_pred EEEeccCCcEEeeccccHHHH
Confidence 999999999999996655443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=149.54 Aligned_cols=156 Identities=19% Similarity=0.280 Sum_probs=136.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~ 80 (203)
.|+|+...+++++.|..|+||..........+..|.++|+.+..+|.|.||++++.|+...+.|++. +..+..... ..
T Consensus 268 ~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~-g~~lt~vs~~~s 346 (506)
T KOG0289|consen 268 KFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS-GSQLTVVSDETS 346 (506)
T ss_pred EeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccC-CcEEEEEeeccc
Confidence 5788888999999999999999987777778889999999999999999999999999999999985 444444332 01
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
.-.+++. |+|||.++.+|..|+.|++||+.++.....|.+|+. +|..++|+.+|-||++++.|+.|++||+|....-.
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence 2346777 999999999999999999999999999999999966 99999999999999999999999999999877543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=159.21 Aligned_cols=150 Identities=17% Similarity=0.236 Sum_probs=135.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCe-----EEE----eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 8 MKLLGTSGDGTLSVCNLRKNT-----VQT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~-----~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
.++++++.|.++++|++...+ ... +...|...|++++++|+..+++||+.|.+.++|++. ......++.+
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsG 503 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSG 503 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeC
Confidence 478999999999999997621 111 224688999999999999999999999999999998 4678889999
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...++++ |+|..+.+++++.|.+|+||.+.+..+++++.+|.. .|..+.|-.+|..|++++.||.|++|++.+..+
T Consensus 504 -H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~-aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 504 -HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS-AVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred -CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc-eeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 99999999 999999999999999999999999999999999965 899999999999999999999999999999887
Q ss_pred CCC
Q 028806 158 GSG 160 (203)
Q Consensus 158 ~~~ 160 (203)
...
T Consensus 582 ~~t 584 (775)
T KOG0319|consen 582 EMT 584 (775)
T ss_pred hhh
Confidence 644
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=163.71 Aligned_cols=152 Identities=14% Similarity=0.231 Sum_probs=130.3
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEe-eCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|+|+| ++.+|++|+.|++|++||+.++..+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||++.....+..+.+
T Consensus 581 l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~ 659 (793)
T PLN00181 581 IDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659 (793)
T ss_pred EEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC
Confidence 46886 7889999999999999999998888777654 678999996 46899999999999999999864445667778
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC------CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
|...|.++ |. ++.+|++++.|+.|++||++. ..++..+.+|.. .+.+++|+|++.+|++|+.|+.|++|+
T Consensus 660 -h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 660 -HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred -CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 89999999 75 788999999999999999974 256778888855 789999999999999999999999999
Q ss_pred CCCcc
Q 028806 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
.....
T Consensus 737 ~~~~~ 741 (793)
T PLN00181 737 KAFPM 741 (793)
T ss_pred CCCCC
Confidence 86553
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-22 Score=137.42 Aligned_cols=112 Identities=17% Similarity=0.257 Sum_probs=94.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC-ccccceeeeccC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~ 80 (203)
+.+.|...+++|+.|..+.+||+.+|+..+.+.+|.+.|+.++|+.+...+++|+.|..+++||.+. ..++++.+.. .
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a 144 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-A 144 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-h
Confidence 3456777899999999999999999999999999999999999999999999999999999999974 2356667666 5
Q ss_pred CCceeEEEeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028806 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 115 (203)
...|.++ .-.+..|++|+.||+++.||++.|+..
T Consensus 145 ~D~V~Si-~v~~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 145 KDGVSSI-DVAEHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred cCceeEE-EecccEEEeeccCCcEEEEEeecceee
Confidence 6666666 335677889999999999999876543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-22 Score=150.40 Aligned_cols=156 Identities=15% Similarity=0.249 Sum_probs=122.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEecCC----CeEEEEEcCCc------
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYF------ 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~------ 69 (203)
.|||.|.++|+|...|+||||+..... +..+++.-.++|..|+|+++++.++..+.. |.+.+||..+.
T Consensus 66 kySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G 145 (603)
T KOG0318|consen 66 KYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG 145 (603)
T ss_pred EeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence 589999999999999999999986532 223455556788888888887766655432 34555655321
Q ss_pred ----------------------------------cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028806 70 ----------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 70 ----------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
-+....+.. |...|.++ |+|+|.++++++.||.|.+||-.+|+.
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~-HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFRE-HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccc-cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence 011112234 66789999 999999999999999999999999999
Q ss_pred eeeec---cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 115 IQPIA---EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 115 ~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
+..+. +|.+ .|++++|+||++.+++++.|.+++|||+.+.....
T Consensus 225 vg~l~~~~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 225 VGELEDSDAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred EEEecCCCCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 98887 7855 89999999999999999999999999998875543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-23 Score=150.17 Aligned_cols=147 Identities=20% Similarity=0.284 Sum_probs=111.2
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC-------------------------------------
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN------------------------------------- 48 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------------- 48 (203)
+.+.|++|+.|.+|+|||..+++++.++.+|...|..+.|+..
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 5668899999999999999999888777777777766666521
Q ss_pred ----CCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC
Q 028806 49 ----GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY 124 (203)
Q Consensus 49 ----~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 124 (203)
.+++++++.|.+|++|++.+ ..+++++.+ |...|.|+ -..++++++|+.|.+|++||+..|.++..+.+|.+
T Consensus 326 Vdfd~kyIVsASgDRTikvW~~st-~efvRtl~g-HkRGIACl-QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe- 401 (499)
T KOG0281|consen 326 VDFDDKYIVSASGDRTIKVWSTST-CEFVRTLNG-HKRGIACL-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE- 401 (499)
T ss_pred eccccceEEEecCCceEEEEeccc-eeeehhhhc-ccccceeh-hccCeEEEecCCCceEEEEeccccHHHHHHhchHH-
Confidence 23555555566666666543 456666666 76666666 23577888899999999999999999988999866
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
-|.++.| +...+++|+.||+|++||+.+....
T Consensus 402 LvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 402 LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred hhhheee--cCceeeeccccceEEEEecccccCC
Confidence 6888888 5678999999999999998776543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-24 Score=166.36 Aligned_cols=159 Identities=22% Similarity=0.332 Sum_probs=146.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|.|++...+|++|+.+|+|++||+...+.++++.+|...+.++.|+|-+.+++.++.|+.+.+||.+. ..+...+.+ |
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s-~ 153 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKS-H 153 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecC-C
Confidence 46888889999999999999999999999999999999999999999999999999999999999984 578888999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
...+.++ |+|+|.+++.++.|..+++||+..|+.+..|..|.. .+.++.|+|..-.+++|+.|+++++||+++.+...
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 9999999 999999999999999999999999999999999966 89999999999999999999999999999876554
Q ss_pred CCC
Q 028806 160 GNN 162 (203)
Q Consensus 160 ~~~ 162 (203)
...
T Consensus 233 s~~ 235 (825)
T KOG0267|consen 233 SGK 235 (825)
T ss_pred ccC
Confidence 433
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-22 Score=147.61 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=129.4
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCC-------eEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCC-cc
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGY-FK 70 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~ 70 (203)
|+|++... .|++++.|++|++||+... .+...+.+|...|..++|++ +..+|++++.|+.+.|||++. ..
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 56887654 7899999999999999742 23456778999999999999 456788999999999999995 23
Q ss_pred ccceeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCc
Q 028806 71 DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSM 146 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~ 146 (203)
.+.....+ |...+.|+ |+| ++..|++|+.|++|.+||+|+- +++.++.+|.. .|.++.|+|.. ..||+++.|+.
T Consensus 263 ~~~~~~~a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 263 KPSHSVKA-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCcccccc-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCc
Confidence 44556677 99999999 987 5677889999999999999974 57788899966 89999999965 67889999999
Q ss_pred EEEEeCCCcccCC
Q 028806 147 LKLWDLDDILKGS 159 (203)
Q Consensus 147 i~iwd~~~~~~~~ 159 (203)
+.|||+..-...+
T Consensus 341 l~vWDls~ig~eq 353 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQ 353 (422)
T ss_pred EEEEecccccccc
Confidence 9999997655443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-22 Score=146.49 Aligned_cols=155 Identities=14% Similarity=0.253 Sum_probs=129.4
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcC--CCeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
++|+|-. .++++++.|+.+.|||++ +.++.....+|...|+|++|+| ++..|++|+.|++|.+||+++...++..+
T Consensus 233 V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 233 VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence 4677755 467888999999999999 4566677788999999999999 45678899999999999999888899999
Q ss_pred eccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccC-C-------------ceeeeeccCCCCceEEEEEeCCCCe-EE
Q 028806 77 VGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-N-------------RIIQPIAEHSEYPIESLALSHDRKF-LG 139 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~-~-------------~~~~~~~~~~~~~i~~i~~~~~~~~-l~ 139 (203)
.+ |...|.++ |+|. ...|++++.|+.+.+||+.. + +.+.+..+|+. .|..+.|+|+..+ |+
T Consensus 313 e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 313 EG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIA 390 (422)
T ss_pred cC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEE
Confidence 99 99999999 9995 56777888999999999853 1 23566778865 8999999998865 66
Q ss_pred EEeCCCcEEEEeCCCccc
Q 028806 140 SISHDSMLKLWDLDDILK 157 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~ 157 (203)
+.+.|+.+.||......-
T Consensus 391 SvaeDN~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 391 SVAEDNILQIWQMAENIY 408 (422)
T ss_pred EecCCceEEEeecccccc
Confidence 888999999999874443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=136.37 Aligned_cols=152 Identities=18% Similarity=0.269 Sum_probs=127.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.|....+.|++++.|++||+||.+++..++.+.. ..+|.++.++++|++|.++. .+.|.+||..+. ..+..+.- .
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf-~~lKs~k~--P 224 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF-GLLKSYKM--P 224 (334)
T ss_pred EEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-CceeEEeccccc-cceeeccC--c
Confidence 3666677888889999999999999999988875 56799999999998876654 578999998753 44444442 4
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..|.+. .+|+-..+++|+.|..++.||..+++.+..+ .+|.+ +|.|+.|+|+|...++|+.||+|++|.+...+...
T Consensus 225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence 456666 7999999999999999999999999999886 77865 99999999999999999999999999987665544
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=151.46 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=124.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE------------eecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT------------RSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~ 67 (203)
++||+.|..|++.+....++|+|-..-.... .-++|...+++.+|+|.. ..|++++.||++++|++.
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 5799999999888888899999966543333 225788999999999965 678999999999999998
Q ss_pred Cccccceeeecc----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeeccCCC-CceEEEEEeCCCCeE
Q 028806 68 YFKDCSDRFVGL----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSE-YPIESLALSHDRKFL 138 (203)
Q Consensus 68 ~~~~~~~~~~~~----~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~-~~i~~i~~~~~~~~l 138 (203)
..+..++.++.. ..-+++.+ |+|+|++|++|+.||.|.+|+..... ....-.+|.. ..|+||.|+++|++|
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 776666666531 12245666 99999999999999999999975432 1222345532 279999999999999
Q ss_pred EEEeCCCcEEEEeCCCcccC
Q 028806 139 GSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~ 158 (203)
++-+.|+++++||+++..+.
T Consensus 380 lSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred hhccCCCceeeeeccccccc
Confidence 99999999999999987654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=154.33 Aligned_cols=155 Identities=15% Similarity=0.252 Sum_probs=138.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+.|+++|.+|++|..+|.|.|||..+.+.+..+.. |...|.+++|. +..+.+|+.++.|..+|++........+.+
T Consensus 223 v~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~- 299 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQG- 299 (484)
T ss_pred EEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhc-
Confidence 46999999999999999999999998888888888 99999999998 678899999999999999976555556788
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEe--CCCcEEEEeCCCc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSIS--HDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~--~d~~i~iwd~~~~ 155 (203)
|...|..+ |++++.++++|+.|+.+.|||.....+...+..|.. +|.+++|+| ....||+|+ .|+.|++||..++
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce-eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 99999999 999999999999999999999988888899999965 899999999 456888877 7999999999887
Q ss_pred ccCC
Q 028806 156 LKGS 159 (203)
Q Consensus 156 ~~~~ 159 (203)
...+
T Consensus 379 ~~i~ 382 (484)
T KOG0305|consen 379 ARID 382 (484)
T ss_pred cEec
Confidence 6553
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=144.60 Aligned_cols=157 Identities=19% Similarity=0.289 Sum_probs=131.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce--ee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--RF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~ 76 (203)
|.|+|....|++++.|++|+++|+......+ .......+|.++.|+|.|.+|++|.....+++||+.+....+. .-
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 5799999999999999999999998643222 2223457899999999999999999999999999986422221 12
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.. |.+.|+++ +++.+++.++++.||.|++||--+++++.++ +.|.+..|.+..|..+++||++.+.|..+++|.+.+
T Consensus 258 ~q-ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 258 DQ-HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred cc-cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 33 78899999 9999999999999999999998888888777 466566899999999999999999999999999988
Q ss_pred cccC
Q 028806 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+..-
T Consensus 337 ~R~l 340 (430)
T KOG0640|consen 337 GRML 340 (430)
T ss_pred CceE
Confidence 7653
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=136.18 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=134.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---- 76 (203)
|.++.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+++...-+...+++|+.|.++++||+.+. .++..+
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG-k~la~~k~~~ 94 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG-KQLATWKTNS 94 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC-cEEEEeecCC
Confidence 457889999999999999999999899999999999999999999999999999999999999999754 222211
Q ss_pred -------------------------------------------------eccCCCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028806 77 -------------------------------------------------VGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 77 -------------------------------------------------~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~ 106 (203)
.. +...++.. |.|-+++|++|..+|.|..
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l~~~ii~Ghe~G~is~ 173 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPLGETIIAGHEDGSISI 173 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-CccceeeeeecccCCEEEEecCCCcEEE
Confidence 11 23344555 8999999999999999999
Q ss_pred EEccCCce-eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 107 VGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 107 ~d~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
||+++|+. +.....|.. .|+.|.++|+..++++++.|.+-++||.++.+....
T Consensus 174 ~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 174 YDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred EEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 99999854 555677755 899999999999999999999999999999876544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=144.37 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=129.8
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
.|+|+++ .+++|+.|+.+++||+.+......+.+|+..|++.+|+|. ...+++|+.||.|++||++.....+..+.
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-- 194 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-- 194 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--
Confidence 4788665 5688889999999999998876688999999999999995 45889999999999999986544444444
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|..+|..+ +-|.|..|++++.. .|++||+-+|..+ ..+..|.. .|+|+.+..+++.|++++.|+.+++||+.+.+-
T Consensus 195 hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccc-eEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 78999999 88999999988765 6999999866544 44444755 899999999999999999999999999877766
Q ss_pred CCCCC
Q 028806 158 GSGNN 162 (203)
Q Consensus 158 ~~~~~ 162 (203)
.+...
T Consensus 273 v~s~~ 277 (487)
T KOG0310|consen 273 VHSWK 277 (487)
T ss_pred EEeee
Confidence 55543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=140.00 Aligned_cols=149 Identities=16% Similarity=0.244 Sum_probs=128.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---- 76 (203)
|.|+|.+..|++|+.||.+.+|.+......+.+.+|..++++-.|.|+|+.++++..||+|++|+..+. .++..+
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-~p~~~~~~~e 232 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-QPLHKITQAE 232 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-ceeEEecccc
Confidence 579999999999999999999999997778899999999999999999999999999999999998642 111110
Q ss_pred --------------------------------------------------------------------------------
Q 028806 77 -------------------------------------------------------------------------------- 76 (203)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (203)
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI 312 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence
Q ss_pred -----------eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 77 -----------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 77 -----------~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
.. |...|..+ |-+ ..+|++++.+|.|+.||.++|+++.++.+|.. +|.+++++|+.+++++++.|
T Consensus 313 yD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 313 YDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDD 389 (399)
T ss_pred Eecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCC
Confidence 01 34455666 655 67899999999999999999999999999965 89999999999999999999
Q ss_pred CcEEEEeCC
Q 028806 145 SMLKLWDLD 153 (203)
Q Consensus 145 ~~i~iwd~~ 153 (203)
++.+||+..
T Consensus 390 ~~a~VF~v~ 398 (399)
T KOG0296|consen 390 NTALVFEVP 398 (399)
T ss_pred CeEEEEecC
Confidence 999999874
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-22 Score=143.88 Aligned_cols=152 Identities=11% Similarity=0.178 Sum_probs=123.6
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEE---EeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCcccc-ce
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQ---TRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDC-SD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~-~~ 74 (203)
|+|||-. ..|++|.--+.|++|...++.-. ..+.+|...|-.|+|+|.. ..|++|+.|++|+|||++..... ..
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 5788832 35777777788999998876432 3556799999999999955 67889999999999999864222 22
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---CceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKL 149 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i 149 (203)
..+. |...|..+ |+....+|++|+.+|.++|||++. ++++..+..|.. +|++|.|+|.. ..|++++.|.+|.+
T Consensus 297 ~~kA-h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 297 STKA-HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred Eeec-cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEE
Confidence 2356 89999999 988888999999999999999985 678899999965 99999999954 67888889999999
Q ss_pred EeCCC
Q 028806 150 WDLDD 154 (203)
Q Consensus 150 wd~~~ 154 (203)
||+.-
T Consensus 375 WDlsv 379 (440)
T KOG0302|consen 375 WDLSV 379 (440)
T ss_pred EEeec
Confidence 99963
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=152.21 Aligned_cols=150 Identities=21% Similarity=0.278 Sum_probs=133.6
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
+..-+.+|++|+.|.+++|||+.++.+...+.+|...|.++... ...+++|+.|.+|++|++.+ +..+..+.+ |..
T Consensus 257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n-~~~l~l~~~-h~~ 332 (537)
T KOG0274|consen 257 FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTN-GACLNLLRG-HTG 332 (537)
T ss_pred EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccC-cceEEEecc-ccc
Confidence 33347789999999999999999999999999999999988764 45778889999999999984 688999999 999
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc-ccCCC
Q 028806 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI-LKGSG 160 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~ 160 (203)
+|.++ .+ +.++++|+.|+.|++|++.+++++..+.+|+. +|.++.+.+. .++++|+.|+.|++||++++ .+.+.
T Consensus 333 ~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 333 PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred cEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence 99999 55 88999999999999999999999999999976 8999988665 89999999999999999999 55443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=154.90 Aligned_cols=159 Identities=13% Similarity=0.172 Sum_probs=136.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc-------c---
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-------K--- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-------~--- 70 (203)
+.|++.-..|++++.|-+|+||+..+.+++..+++|.-.|.|..|+|....+++++-|.+|++||+... +
T Consensus 99 ~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e 178 (1202)
T KOG0292|consen 99 VFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLE 178 (1202)
T ss_pred eeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCch
Confidence 358888889999999999999999999999999999999999999999999999999999999999521 0
Q ss_pred ------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCCceEEE
Q 028806 71 ------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESL 129 (203)
Q Consensus 71 ------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~i 129 (203)
.....+.+ |...|.-+ |+|.-.+|++|+.|+.|++|.+...+ .+-++++|.. .|.++
T Consensus 179 ~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssv 256 (1202)
T KOG0292|consen 179 DQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSV 256 (1202)
T ss_pred hhhhccccchhhcCCcCeeeeeeecc-cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceE
Confidence 01123456 77777777 99999999999999999999987544 4667889966 89999
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCcccCCCC
Q 028806 130 ALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
.|+|...++++.+.|+.|+|||+.....-+.+
T Consensus 257 lfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 257 LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred EecCccceeEecCCCccEEEEecccccceeee
Confidence 99999999999999999999999877665554
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-22 Score=143.80 Aligned_cols=144 Identities=22% Similarity=0.344 Sum_probs=126.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCcee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 85 (203)
+.++|++++.|.+|++|++.++..+.++.+|...|.|+.+ .++++++|+.|.+|++||+. .+.+++.+.+ |..-|+
T Consensus 329 d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~-~G~cLRvLeG-HEeLvR 404 (499)
T KOG0281|consen 329 DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE-CGACLRVLEG-HEELVR 404 (499)
T ss_pred ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecc-ccHHHHHHhc-hHHhhh
Confidence 5679999999999999999999999999999999999887 58899999999999999997 5799999999 999999
Q ss_pred EE-EeeCCCEEEEEcCCCcEEEEEccCCc---------eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 86 AL-LKLDEDRVITGSENGLISLVGILPNR---------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
++ | +.+.|++|..||+|++||+..+. ++..+..|++ .|..+.| |...+++++.|.+|.|||+..+
T Consensus 405 ciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg-RVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 405 CIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG-RVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred heee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccc-eeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 99 7 56789999999999999997653 3455566755 7888888 6778999999999999999877
Q ss_pred ccC
Q 028806 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
.+.
T Consensus 480 ~~~ 482 (499)
T KOG0281|consen 480 PPS 482 (499)
T ss_pred Ccc
Confidence 765
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=141.94 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=126.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC-------------------------CeEEEeecCCccceEEEEEeeCCCEEEEec
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRK-------------------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 56 (203)
+..++|..+++|+.|..|.||+... ..++..+.+|..+|.++.|++ ...+++++
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S 278 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS 278 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeec
Confidence 4568899999999999999999321 123457788999999999987 77899999
Q ss_pred CCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeeccCCCCceEEEEEe
Q 028806 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 57 ~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~i~~i~~~ 132 (203)
.|.+|+.||+.+. .....+.+ ...+.++ .+|..++|++|+.|..|++||.+++. ..+++.+|.. .|.++.|+
T Consensus 279 wDHTIk~WDletg-~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkws 354 (423)
T KOG0313|consen 279 WDHTIKVWDLETG-GLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWS 354 (423)
T ss_pred ccceEEEEEeecc-cceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh-hhhheecC
Confidence 9999999999864 55555654 5678888 89999999999999999999998753 4577889966 89999999
Q ss_pred CCC-CeEEEEeCCCcEEEEeCCCcc
Q 028806 133 HDR-KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|.. ..|++++.|+++++||+|+..
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCC
Confidence 965 568899999999999999876
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-22 Score=149.35 Aligned_cols=149 Identities=15% Similarity=0.334 Sum_probs=125.9
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--------
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-------- 71 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------- 71 (203)
+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++++++++++.|+++++|+.+..-.
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~ 384 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE 384 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh
Confidence 4688988 7889999999999999999999999999999999999999999999999999999999864210
Q ss_pred -----c--------------------------------ceeeeccCCCc--eeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 72 -----C--------------------------------SDRFVGLSPNS--VDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 72 -----~--------------------------------~~~~~~~~~~~--v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
+ ...+.+ |..+ -..+ |+|+|.+|++|+.+|.+.+||.++
T Consensus 385 ~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 385 MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 0 001122 2222 2334 899999999999999999999999
Q ss_pred CceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEe
Q 028806 112 NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWD 151 (203)
Q Consensus 112 ~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd 151 (203)
.+.+..+..|.+ ++..+.|+|.. ..+|+++.+|.|++|+
T Consensus 464 ~kl~~~lkah~~-~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 464 TKLVSKLKAHDQ-PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhccccCCc-ceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999955 89999999965 6899999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=143.21 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=131.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+.||++|++||+++.|.+..+|.+... +...++.+|..+|..+.|+||.++|++++.+..+.+||+.+ +.....+.
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t-gd~~~~y~ 308 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT-GDLRHLYP 308 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc-chhhhhcc
Confidence 469999999999999999999987543 45678889999999999999999999999999999999985 56665555
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..+...+.++ |.|||..+++|+.|+.+..||+. |..+..+++-....|.+++.++||.++++.+.|..|++++..+..
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 3123556666 99999999999999999999986 566666666544479999999999999999999999999987776
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
.+
T Consensus 388 dr 389 (519)
T KOG0293|consen 388 DR 389 (519)
T ss_pred hh
Confidence 55
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=143.22 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=128.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC--------ccccc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--------FKDCS 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--------~~~~~ 73 (203)
+-+|.|.+|+.|+..|.|++|.+.+|.++..+..|-..|+++.|+-|+.+|++|+.||.|.+|.+.. ...++
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 4578999999998999999999999999999999999999999999999999999999999998832 23456
Q ss_pred eeeeccCCCceeEE-E--eeCCCEEEEEcCCCcEEEEEccCCceeee---------------------------------
Q 028806 74 DRFVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGILPNRIIQP--------------------------------- 117 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--------------------------------- 117 (203)
..|.. |.-+|+.+ . .+...++++++.|.++++||+..+..+.+
T Consensus 168 ~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 168 HIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred eeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeeh
Confidence 67788 88899988 4 34567899999999999999865543322
Q ss_pred ------------------------eccCCC-CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 118 ------------------------IAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 118 ------------------------~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+|.+ .+|+|++++-||..|++|+.||.++|||+.+.+
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 223432 379999999999999999999999999976654
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=150.28 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=134.5
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCccceEEEEE-eeCCCEEEEecCCCeEEEEEcCCccc-cce----
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSGTVLLYSWGYFKD-CSD---- 74 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~---- 74 (203)
..-+++.|++++.|.+|++|+...+ -+..++..|...|.|+++ .++..++++|+-|+.|.+||+..... .+.
T Consensus 81 L~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~ 160 (735)
T KOG0308|consen 81 LCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN 160 (735)
T ss_pred hhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc
Confidence 3456889999999999999999876 566788899999999999 77888999999999999999975321 111
Q ss_pred ----eee-ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 75 ----RFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 75 ----~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
.+. + +...++++ .++.|..|++|+..+.|++||.++++.+..+++|++ .|..+..++||+.+++++.||+|+
T Consensus 161 ~t~~sl~sG-~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 161 VTVNSLGSG-PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred cccccCCCC-CccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEE
Confidence 122 4 56778888 689999999999999999999999999999999988 899999999999999999999999
Q ss_pred EEeCCCcccCCCC
Q 028806 149 LWDLDDILKGSGN 161 (203)
Q Consensus 149 iwd~~~~~~~~~~ 161 (203)
+||+....+....
T Consensus 239 lWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 239 LWDLGQQRCLATY 251 (735)
T ss_pred eeeccccceeeeE
Confidence 9999887766543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=147.87 Aligned_cols=157 Identities=13% Similarity=0.205 Sum_probs=141.4
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++|+..|..||.|+. -|.+-||+.++...+...++|...+++++++|||+++++|+.||.|++||.. .+-|..+|..
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vTFte- 390 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFVTFTE- 390 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEEEEecc-
Confidence 467888999988765 4899999999998888999999999999999999999999999999999997 4689999999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC-cEEEEeCCCccc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS-MLKLWDLDDILK 157 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~iwd~~~~~~ 157 (203)
|...|+.+ |+..|+.+++++-||+|+.||+...+...++.........|++..|.|..++.|+.|. .|++|++.+++.
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 99999999 9999999999999999999999999999999887554667889999999999998775 699999999976
Q ss_pred CC
Q 028806 158 GS 159 (203)
Q Consensus 158 ~~ 159 (203)
-.
T Consensus 471 lD 472 (893)
T KOG0291|consen 471 LD 472 (893)
T ss_pred ee
Confidence 53
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=147.41 Aligned_cols=151 Identities=13% Similarity=0.167 Sum_probs=132.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee-CCCEEEEec--CCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGS--QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~ 77 (203)
|+|+++++++|+|+.|+.+.|||.....+...+..|...|..++|+| ...+|++|+ .|+.|++|++.+ +..+..+.
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd 385 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD 385 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc
Confidence 57999999999999999999999988888889999999999999999 557888865 599999999974 56666665
Q ss_pred ccCCCceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
. ...|..+ |++..+-|+++. .+..|.||...+.+.+..+.+|.. .|..++++|+|..+++++.|.++++|++-.
T Consensus 386 t--gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 386 T--GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred c--CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 3 6789999 999887777644 467899999999999999999976 899999999999999999999999999876
Q ss_pred c
Q 028806 155 I 155 (203)
Q Consensus 155 ~ 155 (203)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 5
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=145.82 Aligned_cols=151 Identities=17% Similarity=0.253 Sum_probs=126.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
.|-.||+++|+|...|.|+|||+.+...+..+..|..++..+.|+|+. ..|++|+.|+.+++||+.+. .....+.+ |
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-~v~~~l~~-h 152 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-YVQAELSG-H 152 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-EEEEEecC-C
Confidence 577899999999999999999976655677888999999999999965 56778888999999999754 33446788 9
Q ss_pred CCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLD-EDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+..|+|. ++|. +..+++|+.||.|++||+++. ..+.++. | +.+|..+.+-|.|..+++++ ...+++||+-++.+
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-h-g~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-H-GCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQ 229 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-C-CCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCce
Confidence 9999999 8775 557889999999999999976 5555554 3 34899999999999999987 45899999986543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-21 Score=132.71 Aligned_cols=157 Identities=18% Similarity=0.297 Sum_probs=128.6
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---------
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--------- 70 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--------- 70 (203)
++|+|. ...+++++.|.+|++||++.+++...+....+ -..+.|+|++.+++.++.|..|.+.|.++..
T Consensus 70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~ 148 (313)
T KOG1407|consen 70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF 148 (313)
T ss_pred heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc
Confidence 356664 46889999999999999999998877765433 4467899999999999999888888775321
Q ss_pred -------------------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee
Q 028806 71 -------------------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 71 -------------------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 118 (203)
+++..++. |.....|+ |+|+|+++++|+.|-.+.+||+..--++..+
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 12333455 77778888 9999999999999999999999988888888
Q ss_pred ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 119 AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 119 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
..+ +.+|+.+.|+.+|++||+++.|.-|-|=++.++..-.+
T Consensus 228 sRl-dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 228 SRL-DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred ccc-cCceEEEEeccCcceeeccCccceEEeEecccCCeEEE
Confidence 887 66999999999999999999999998888887765433
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-21 Score=134.97 Aligned_cols=151 Identities=12% Similarity=0.149 Sum_probs=124.4
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCC-CeEE-EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
|+||| ...++++++.|++||+|+++. +... .....|.++|.+++|+.+|..+++|+.|+.+++||+.+. .+..+.
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~--Q~~~v~ 110 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG--QVSQVA 110 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC--Ceeeee
Confidence 57999 455677999999999999986 3333 334468899999999999999999999999999999853 556677
Q ss_pred ccCCCceeEE-EeeCC--CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 78 GLSPNSVDAL-LKLDE--DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
. |..+|.++ |-+.. ..|++|+.|.+|++||++...++.++... + .++++.. -...++++..++.|.+|++++
T Consensus 111 ~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-e-RvYa~Dv--~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 111 A-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-E-RVYAADV--LYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred e-cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-c-eeeehhc--cCceeEEEecCCcEEEEEcCC
Confidence 7 99999999 75444 48999999999999999999999888776 4 5777654 445788888999999999987
Q ss_pred cccC
Q 028806 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+..+
T Consensus 186 ~~te 189 (347)
T KOG0647|consen 186 PPTE 189 (347)
T ss_pred Ccch
Confidence 7644
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-21 Score=156.61 Aligned_cols=153 Identities=15% Similarity=0.244 Sum_probs=134.1
Q ss_pred CcccccCCEEEEEc--CCCeEEEEEcCC------------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028806 1 MTFAADAMKLLGTS--GDGTLSVCNLRK------------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~--~d~~i~vw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 66 (203)
+..+|+|..+++|+ .|+.++||+... .+.+.....|.+.|.|+.|+|||++|++|+.|+.|.+|..
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 35789999999999 899999999752 2334566779999999999999999999999999999998
Q ss_pred CC------cc-----------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEE
Q 028806 67 GY------FK-----------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES 128 (203)
Q Consensus 67 ~~------~~-----------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~ 128 (203)
.. .+ .++..+.+ |...|..+ |+|++.++++++.|++|.+|+..+.+.+..+.+|.. .|..
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-~VKG 176 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS-LVKG 176 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc-cccc
Confidence 62 01 24556778 99999999 999999999999999999999999999999999965 8999
Q ss_pred EEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 129 LALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 129 i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+.|.|-|+|+|+-+.|++|+||.+...
T Consensus 177 vs~DP~Gky~ASqsdDrtikvwrt~dw 203 (942)
T KOG0973|consen 177 VSWDPIGKYFASQSDDRTLKVWRTSDW 203 (942)
T ss_pred eEECCccCeeeeecCCceEEEEEcccc
Confidence 999999999999999999999997663
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=135.23 Aligned_cols=104 Identities=12% Similarity=0.203 Sum_probs=93.1
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC--EEEEecCCCeEEEEEcCCccccceeeeccCCCc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 83 (203)
++.++|+|+.|.+|+|||++....+..+-.|.+.|+++.|.++.. .|++|+.||.|.+|+.... .++..+++ |.+.
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~-H~~~ 129 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKA-HKGQ 129 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecc-cccc
Confidence 688999999999999999999888888888999999999998765 8999999999999999854 78888898 9999
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
|+.+ .+|.+++.++.+.|+.+++||+-.
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhc
Confidence 9999 899999888888888888888743
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-20 Score=132.50 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=127.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc-cccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-KDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~ 79 (203)
|+.+|-+..+++++.|++|++||++..++...+.....+ .++|.|.|-+++++.....|++||++.- +.+..++.-
T Consensus 106 L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i- 182 (311)
T KOG1446|consen 106 LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSI- 182 (311)
T ss_pred EEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEcc-
Confidence 457898999999999999999999977666555443333 3789999999999988889999999864 345555543
Q ss_pred C---CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCc--eEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 80 S---PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP--IESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 80 ~---~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. ......+ |+|+|++|+.++..+.+++.|.-+|..+.++..+.... -...+|+||++++++|+.||+|.+|+++
T Consensus 183 ~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 183 TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 3 4567778 99999999999999999999999999888887775421 1467899999999999999999999998
Q ss_pred CcccCCC
Q 028806 154 DILKGSG 160 (203)
Q Consensus 154 ~~~~~~~ 160 (203)
++.+-..
T Consensus 263 tg~~v~~ 269 (311)
T KOG1446|consen 263 TGKKVAV 269 (311)
T ss_pred CCcEeeE
Confidence 8876543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-22 Score=142.47 Aligned_cols=156 Identities=15% Similarity=0.274 Sum_probs=139.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
|.||.|..+||+|+.||.|+||.+.+|.+++.+. .|...|+++.|+.|+..+++++.|.++++.-+. .+.++..+.+
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKEfrG- 346 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKEFRG- 346 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHHhcC-
Confidence 4689999999999999999999999999998887 899999999999999999999999999999997 5789999999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCC-CCeEEEEeCCCcEEEEeCCCcc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHD-RKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...|... |+++|.++++++.||+|++|+..+++++.+++... +.+|.++..-|. ...+++|...++|+|-++....
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 99999999 99999999999999999999999999998886543 458888888884 4678888889999999886554
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
-+
T Consensus 427 Vr 428 (508)
T KOG0275|consen 427 VR 428 (508)
T ss_pred Ee
Confidence 43
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=134.30 Aligned_cols=157 Identities=16% Similarity=0.173 Sum_probs=129.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 78 (203)
+.||+.|.+||+|..+|.|.|||+.+-.....+.+|..+|.+++|+++|++|++++.|..+.+||+..+ .+++.+.-
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g-s~l~rirf~s 107 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG-SPLKRIRFDS 107 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC-CceeEEEccC
Confidence 469999999999999999999999998888888999999999999999999999999999999999743 33332210
Q ss_pred ------cC------------------------------------CCce-eEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028806 79 ------LS------------------------------------PNSV-DAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 79 ------~~------------------------------------~~~v-~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
.| ...+ .+. |.+.|++|++|...|.+.+|+..+-++
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee
Confidence 00 0001 112 567789999999999999999999999
Q ss_pred eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 115 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+..++-.....|.++.++..|+.|+.-+.|+.|+.|+++.....
T Consensus 188 vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 188 VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence 88887665347999999999999999999999999998754433
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=138.42 Aligned_cols=148 Identities=19% Similarity=0.286 Sum_probs=129.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC--CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
..+|.|.||++++.|++..+.|++++..+..... ..-.+++.+|+|||..|.+|..|+.+++||+.. +..+..|.+
T Consensus 310 s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpg- 387 (506)
T KOG0289|consen 310 SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPG- 387 (506)
T ss_pred eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCC-
Confidence 4578999999999999999999999987655543 334689999999999999999999999999975 568889999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
|.++|..+ |+-+|-+|++++.|+.|++||++.-+..+++.......+.++.|.+.|++|+.++.+=.|++++
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 99999999 9999999999999999999999988877777666544799999999999999998776666665
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=140.11 Aligned_cols=153 Identities=15% Similarity=0.145 Sum_probs=134.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++.||||++||+|+.|..|.||+..+.+.+..+++|.+.|.+++|-.....|++++.|+.+++|++.. ...+.++.+ |
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s~vetlyG-H 285 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LSYVETLYG-H 285 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hHHHHHHhC-C
Confidence 47899999999999999999999999999999999999999999998889999999999999999973 567888999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...|..+ ....++.+-+|+.|+++++|.+. .+....+.++.. .+-|++|-.+ .++++|+.+|.|.+|++....+-
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence 9999999 77777788888899999999994 344456777744 7899998755 67899999999999999877654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-20 Score=144.48 Aligned_cols=152 Identities=16% Similarity=0.259 Sum_probs=130.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee---cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------- 70 (203)
++.++.|++.+.|...|+|-+|++++|-....+ ..|..+|++++...-++.+++++.+|-+.+||+....
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l 533 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL 533 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc
Confidence 356788999999999999999999999877777 4789999999998888899999999999999986421
Q ss_pred ---------------------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee
Q 028806 71 ---------------------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ 116 (203)
Q Consensus 71 ---------------------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 116 (203)
..++.|.+ |.+.++.+ |+|+|++|++++.|++|++||+.++.++-
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence 12223456 88899999 99999999999999999999999999998
Q ss_pred eeccCCCCceEEEEEeCCCCeEEEEeCC-CcEEEEeCCCc
Q 028806 117 PIAEHSEYPIESLALSHDRKFLGSISHD-SMLKLWDLDDI 155 (203)
Q Consensus 117 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~~i~iwd~~~~ 155 (203)
.+... . ++.++.|+|+|.+||+...| .-|++|-=.+.
T Consensus 613 ~~~vd-~-~~~sls~SPngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 613 GLLVD-S-PCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred eEecC-C-cceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence 77665 3 78999999999999999977 67999964443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=127.17 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=125.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+-++.+++.....|+|.|.....-+++..++.|.....||.|+|+|++|++|+.|-.+.+||+. .-.+++.+.. +
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~-ELiC~R~isR-l 230 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD-ELICERCISR-L 230 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh-Hhhhheeecc-c
Confidence 3577667777777777999999999999999999999999999999999999999999999999997 3567788887 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
..+|+.+ |+.+|++|++++.|..|-|=++++|..+..++.. . +...++|+|...+||.++.|
T Consensus 231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-~-~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE-G-PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc-C-CceeEEecCCCceeeEEecC
Confidence 9999999 9999999999999999999999999999888765 3 78999999999999987754
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-20 Score=134.99 Aligned_cols=148 Identities=16% Similarity=0.240 Sum_probs=127.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceeeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~ 79 (203)
.|++ ...+++++.|.+|++||+.++.....+.+ ...+.++..+|..++|++|+.|..+++||.++.. ...+.+.+
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g- 343 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG- 343 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec-
Confidence 4666 66889999999999999999988887776 4679999999999999999999999999998643 33467888
Q ss_pred CCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCc-eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 80 SPNSVDAL-LKLDED-RVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
|.+.|.++ |+|... .|++++.|+++++||+++.+ ++..+.+|.+ .|.++.|+. +.+|++|+.|++|+|+.-..
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D-Kvl~vdW~~-~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND-KVLSVDWNE-GGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc-eEEEEeccC-CceEEeccCcceEEEecccc
Confidence 99999999 999654 57789999999999999877 8999999966 899999974 46899999999999987543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-20 Score=145.83 Aligned_cols=154 Identities=11% Similarity=0.165 Sum_probs=129.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc-
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL- 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~- 79 (203)
++|+-+|+++|.|+.|-.|++.+..+......+++|.++|.++.|+|.+++|++++.||.|++|++.. +.+...+...
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~ 180 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVD 180 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCC
Confidence 46888999999999999999999998888889999999999999999999999999999999999974 4444443320
Q ss_pred -----C-CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC-ceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 80 -----S-PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 -----~-~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
. ...+..+ |+|++..+++.+.++.|++|+....+....++..... .+..+.|+|+|.|||+++.+|.|.|||
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 1 1223344 9999999999999999999999988888777654322 488899999999999999999999999
Q ss_pred CCCc
Q 028806 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+.+.
T Consensus 261 v~t~ 264 (933)
T KOG1274|consen 261 VDTH 264 (933)
T ss_pred cccc
Confidence 9853
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-20 Score=141.02 Aligned_cols=154 Identities=15% Similarity=0.269 Sum_probs=125.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecC--CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-ee
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~ 75 (203)
++|...+++++|+. |.|+|||+... .++..+.. ....|+++.+.|||+.|++|+.-.++.|||+......+ ..
T Consensus 426 tIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae 504 (705)
T KOG0639|consen 426 TISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE 504 (705)
T ss_pred EecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh
Confidence 45666678888876 89999999753 23333332 34678999999999999999999999999997533222 23
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+.. .....+++ .+||.+..++++.||.|.|||+.+...+..+++|++ .+.||.++++|..|.+|+.|.+++.||+++
T Consensus 505 lts-sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-GascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 505 LTS-SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred cCC-cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-CceeEEecCCCceeecCCCccceeehhhhh
Confidence 333 34456667 799999999999999999999999999999999988 789999999999999999999999999999
Q ss_pred cccC
Q 028806 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+.+-
T Consensus 583 grql 586 (705)
T KOG0639|consen 583 GRQL 586 (705)
T ss_pred hhhh
Confidence 8754
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-19 Score=126.30 Aligned_cols=153 Identities=16% Similarity=0.244 Sum_probs=134.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|.|+++|.+|++++.|.+|++||..++..+.++..+...+..+.|....+.++.++. |.+|+.-++.. .+.++.|.+
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d-NkylRYF~G 98 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD-NKYLRYFPG 98 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec-CceEEEcCC
Confidence 568999999999999999999999999999999888888999999887777777776 88999999974 588999999
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...|..+ .+|-+..+++++.|++|++||++..++...+..... + .++|+|+|-++|++...+.|++||++....
T Consensus 99 -H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 99 -HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-P--IAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred -CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-c--ceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 99999999 899999999999999999999998887777765522 3 479999999999999888999999998754
Q ss_pred C
Q 028806 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 175 g 175 (311)
T KOG1446|consen 175 G 175 (311)
T ss_pred C
Confidence 4
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=137.76 Aligned_cols=156 Identities=13% Similarity=0.150 Sum_probs=130.3
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+.|+|... .|++|..|+.|.+||++++.++..+.. ....+.|+|+|.+-.|++++.|..++.||++....++.....
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d- 270 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD- 270 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcc-
Confidence 35777654 678888999999999999877765532 345678999998888999999999999999988888888999
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|...|..+ |+|.|+-+++|+.|.+|+||..+.+...-.+....-..|.|+.|+.|.+|+++|+.|+.|++|.....+.-
T Consensus 271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 99999999 99999999999999999999998776554443222237999999999999999999999999987655443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=138.90 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=132.3
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCe--EEE--------eec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNT--VQT--------RSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~--~~~--------~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
-++..++|+|+-|+.|.+||+.++. .+. .+. ++...|++++.++.+..+++|+..+.+++||.++ ...
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~~k 205 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-CKK 205 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-ccc
Confidence 4567789999999999999999762 222 223 6778899999999999999999999999999986 455
Q ss_pred ceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+..+.+ |...|+++ .+++|+.+++++.||+|++||+...+++.++..|.+ .|+++..+|+=.++++|+.||.|..=|
T Consensus 206 imkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 206 IMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred eeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecc
Confidence 667789 99999999 899999999999999999999999999999999987 699999999999999999999999999
Q ss_pred CCCc
Q 028806 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+++.
T Consensus 284 l~n~ 287 (735)
T KOG0308|consen 284 LRNP 287 (735)
T ss_pred cCCc
Confidence 9985
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=141.23 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=134.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc----cccc----
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCS---- 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~---- 73 (203)
.|-|.+++++.|...|.+.+||+.....+.+++.|.+.|+.++.+||+..+++++.|.+|++||+... +...
T Consensus 419 ~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls 498 (888)
T KOG0306|consen 419 KFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS 498 (888)
T ss_pred EecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence 46788899999999999999999988888888999999999999999999999999999999998521 1111
Q ss_pred ----eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 74 ----DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 74 ----~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
+++. -...+.|+ ++|+|++++++--|.+|+||-+.+-+....+.+|.- ||.||.++||+..++||+.|+.|+
T Consensus 499 l~~~rtLe--l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL-PV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 499 LKHTRTLE--LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-PVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred eccceEEe--ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc-ceeEEeccCCcCeEEeccCCCceE
Confidence 1122 35678889 999999999999999999999999999999999966 999999999999999999999999
Q ss_pred EEeCCCcccCCC
Q 028806 149 LWDLDDILKGSG 160 (203)
Q Consensus 149 iwd~~~~~~~~~ 160 (203)
+|-+.=+.+...
T Consensus 576 iWGLdFGDCHKS 587 (888)
T KOG0306|consen 576 IWGLDFGDCHKS 587 (888)
T ss_pred Eeccccchhhhh
Confidence 998876665433
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=137.23 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=126.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCcc--ceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEE--ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++|+|+|+.||+|..||.|.+|+..... ....-..|.. .|+||.|+++|++|++-+.|+++++||++..++++..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 4799999999999999999999975421 1223345655 8999999999999999999999999999987777766
Q ss_pred eecc--CCCceeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 76 FVGL--SPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 76 ~~~~--~~~~v~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
..+. ......|+|+|+.++|++|+. .|.+.+||..+-..+..+.-. ...|..+.|+|.=+.|++++.||.+
T Consensus 403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGTA 481 (641)
T ss_pred hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecCCCce
Confidence 5541 112234559999999999865 477999999988888888766 4478999999998889999999999
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++|--.+..++
T Consensus 482 ~vyYdp~~S~R 492 (641)
T KOG0772|consen 482 HVYYDPNESIR 492 (641)
T ss_pred EEEECcccccc
Confidence 99876655554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=124.84 Aligned_cols=149 Identities=21% Similarity=0.308 Sum_probs=119.5
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeec-------------------------------------------------
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSE------------------------------------------------- 34 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~------------------------------------------------- 34 (203)
+-+.++|++|+.|.++++||+.+|+.+..++
T Consensus 61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 61 DWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred cCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 4456788888888888888888876554331
Q ss_pred ----CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028806 35 ----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 35 ----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~ 109 (203)
.+.+.++.+.|.|-+..|++|..+|.|..||+++....+..... |...|..+ ++|+..++++++.|.+-++||+
T Consensus 141 ~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred EEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh-hccccccccccCCcceEEecccCccceeeec
Confidence 23455677888888999999999999999999976666666677 88899999 9999999999999999999998
Q ss_pred cCCceeeeec-------------------------------------------------------cCCCCceEEEEEeCC
Q 028806 110 LPNRIIQPIA-------------------------------------------------------EHSEYPIESLALSHD 134 (203)
Q Consensus 110 ~~~~~~~~~~-------------------------------------------------------~~~~~~i~~i~~~~~ 134 (203)
++-+.++++. +|-+ +|.+++|+|+
T Consensus 220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPd 298 (327)
T KOG0643|consen 220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPD 298 (327)
T ss_pred cceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCC
Confidence 7644443332 3433 8999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCC
Q 028806 135 RKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~ 154 (203)
|...++|+.||.|++.-+..
T Consensus 299 GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcccccCCCCceEEEEEecc
Confidence 99999999999999986654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=144.42 Aligned_cols=157 Identities=16% Similarity=0.155 Sum_probs=130.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc----------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---------- 70 (203)
++|+|++.+|++++.|++|.||+..+...+..+++|.+.|-.+.|.|-|++|++-+.|++|++|.+...+
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 5799999999999999999999999999999999999999999999999999999999999999964310
Q ss_pred ------------------------------cc-----------ceeeeccCCCceeEE-EeeC-----CC----------
Q 028806 71 ------------------------------DC-----------SDRFVGLSPNSVDAL-LKLD-----ED---------- 93 (203)
Q Consensus 71 ------------------------------~~-----------~~~~~~~~~~~v~~~-~~~~-----~~---------- 93 (203)
.. -..|.+ |..++.++ |+|. ..
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcc
Confidence 00 011346 77888888 8772 11
Q ss_pred --EEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 94 --RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 94 --~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+++|+.|+.|.||.....+++..+..-....|..|+|+|||..|+.++.||+|.++.+......
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence 57789999999999987667665554333448999999999999999999999999998766544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-19 Score=139.72 Aligned_cols=151 Identities=18% Similarity=0.195 Sum_probs=120.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
|.||. .++|++++-|.+|++|.+....++..+. |..-|+|++|+| |.++|++|+-|+.++||++.. ..+.....
T Consensus 375 lSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~D- 449 (712)
T KOG0283|consen 375 LSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD--KKVVDWND- 449 (712)
T ss_pred ccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCc--CeeEeehh-
Confidence 45775 4589999999999999999988988775 889999999999 789999999999999999963 33333443
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec--cCC-----CCceEEEEEeCCC-CeEEEEeCCCcEEEE
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA--EHS-----EYPIESLALSHDR-KFLGSISHDSMLKLW 150 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~-----~~~i~~i~~~~~~-~~l~~~~~d~~i~iw 150 (203)
-..-|+++ |.|+|++.+.|+.+|.+++|+....+...... .+. ...|+.+.|.|.. ..|++.+.|..|+||
T Consensus 450 l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~ 529 (712)
T KOG0283|consen 450 LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIY 529 (712)
T ss_pred hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEE
Confidence 35678888 99999999999999999999987665543331 110 1269999999854 457777889999999
Q ss_pred eCCCcc
Q 028806 151 DLDDIL 156 (203)
Q Consensus 151 d~~~~~ 156 (203)
|++...
T Consensus 530 d~~~~~ 535 (712)
T KOG0283|consen 530 DGRDKD 535 (712)
T ss_pred eccchh
Confidence 995543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=137.30 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=132.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEe-ecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCcee
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTR-SEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 85 (203)
..++++++.+.+|++|+..++..+.. +.+|.+.|+++++..-+.++++|+.|.++++||+. .+.+...+.+ |...+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l~g-h~stv~ 295 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSLQG-HTSSVR 295 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEecC-CCceEE
Confidence 56788999999999999999988877 99999999999998778899999999999999986 5799999999 999888
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
++ +-...++++|+.|.+|++|++.++..+..+.+|.. +|.++..+ +.++++|+.|+.|++|++.++..-..
T Consensus 296 ~~-~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~-~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s 366 (537)
T KOG0274|consen 296 CL-TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG-PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS 366 (537)
T ss_pred EE-EccCceEeeccCCceEEEEeccCcceEEEeccccc-cEEEEEec--CCEEEEEecCceEEEEEhhhceeeee
Confidence 88 34556778899999999999999999999999866 89999997 88999999999999999998776544
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=118.76 Aligned_cols=154 Identities=21% Similarity=0.307 Sum_probs=120.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE-----EEeecCCccceEEEEEeeC---------------------------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-----QTRSEFSEEELTSVVLMKN--------------------------- 48 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~~--------------------------- 48 (203)
.+|||+|++|++|+.|.+|++..+....+ -..+.-|.+.|..++|..+
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 37999999999999999999887653211 1123334555555555432
Q ss_pred -------------------CCEEEEecCCCeEEEEEcCCccccceeeec------cCCCceeEE-EeeCCCEEEEEcCCC
Q 028806 49 -------------------GRKVVCGSQSGTVLLYSWGYFKDCSDRFVG------LSPNSVDAL-LKLDEDRVITGSENG 102 (203)
Q Consensus 49 -------------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~------~~~~~v~~~-~~~~~~~l~~~~~d~ 102 (203)
+-.+++|+.|.+|++||++. ..++.++.. .....|.++ ..|.|+++++|..|.
T Consensus 175 ~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 33677889999999999985 355554422 122567777 799999999999999
Q ss_pred cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 103 LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...+||++.++.++.+..|+. .|.|+.|+|...|+++++.|..|++-|+....
T Consensus 254 sc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred ceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 999999999999999999965 89999999999999999999999999986543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=134.38 Aligned_cols=158 Identities=16% Similarity=0.240 Sum_probs=127.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc-----------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----------- 69 (203)
+.|.++++++++++.|+.+++|++...+...++.+|...|+++.|......+++++.|.+|+.||+...
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc
Confidence 467889999999999999999999999999999999999999998776655777777777777777531
Q ss_pred ---------------------------cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC
Q 028806 70 ---------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 70 ---------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 121 (203)
..+..... -.+.|+++ .++++..+++++.|.++.+.|+++.+....+...
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc
Confidence 11111111 13467888 7889999999999999999999998888777654
Q ss_pred C---CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 122 S---EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 122 ~---~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
. ....+.+.|+|++.|+++|+.||.|+||++.++.....
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence 2 12478899999999999999999999999999876644
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=128.89 Aligned_cols=156 Identities=16% Similarity=0.253 Sum_probs=127.4
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|+.. .+.||+|+.|.+|.+||+.++++..++..|...|.++.|+|. ..+|++|+.|+++.++|.+.....-..+.
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-- 327 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-- 327 (463)
T ss_pred HhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--
Confidence 34443 357899999999999999999999999999999999999995 47889999999999999984333333333
Q ss_pred CCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028806 80 SPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+.|-.+ |.|. ...++++..||.|+-+|+|. ++++.++..|.+ +|.++++++.- .+|++++.|+.+++|++..-
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 35677777 8664 45677788899999999986 589999999966 89999999855 56889999999999999876
Q ss_pred ccCCC
Q 028806 156 LKGSG 160 (203)
Q Consensus 156 ~~~~~ 160 (203)
.+...
T Consensus 407 ~~~~v 411 (463)
T KOG0270|consen 407 SPKSV 411 (463)
T ss_pred CCccc
Confidence 66543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-20 Score=143.92 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=138.9
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
++.+++|+.+..+.+|.+.....+..+.+|..+|.++.|++...+|+.|+.+|+|++||+.. ...++++.+ |...+..
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtg-h~~~~~s 117 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTG-HLLNITS 117 (825)
T ss_pred ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhc-cccCcce
Confidence 46788899999999999988777778899999999999999999999999999999999974 577889999 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCC
Q 028806 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNN 162 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 162 (203)
+ |+|-+.+.+.++.|+.+.+||++-..+...+.+|.. .+..+.|+|+|++++.++.|..++|||+..+.....++
T Consensus 118 v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 118 VDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred eeeccceEEeccccccccceehhhhccCceeeecCCcc-eeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 9 999999999999999999999998888889999865 78999999999999999999999999998887766655
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-19 Score=126.56 Aligned_cols=157 Identities=14% Similarity=0.211 Sum_probs=117.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-----eEE-Eeec----------------------------------------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-----TVQ-TRSE---------------------------------------- 34 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~-----~~~-~~~~---------------------------------------- 34 (203)
|+|+.||++|++++.|++|++|+++.- +++ ..++
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~ 171 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS 171 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC
Confidence 689999999999999999999998641 000 0000
Q ss_pred -------------CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcC
Q 028806 35 -------------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE 100 (203)
Q Consensus 35 -------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~ 100 (203)
.|...+..+-....+.++++++.|..|.+|++. ++.+..+.. .....+.. .+|+|+++++++-
T Consensus 172 ~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idt-nq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 172 HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDT-NQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred cccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeecc-ccccccceeeCCCCcEEEEecC
Confidence 011223333333445688999999999999997 677777766 55444445 7999999999998
Q ss_pred CCcEEEEEcc---CC-----ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCC
Q 028806 101 NGLISLVGIL---PN-----RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 101 d~~i~~~d~~---~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
--.|++|.+- .| .....+.+|.. .|..++|+++.+.+++.+.||+++|||+.-.....++
T Consensus 249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCceEEEEEeccCcchhhhhhhheeccchh-heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 8889999863 22 24567889954 8999999999999999999999999998766554443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.1e-19 Score=129.21 Aligned_cols=155 Identities=11% Similarity=0.143 Sum_probs=129.8
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
++|+| +.+.||+|+.|.+|.||.+..+ +++..+.+|..+|-.++|+|.. +.|++++.|.+|.+|++.+. .
T Consensus 87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg-e 165 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG-E 165 (472)
T ss_pred cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC-c
Confidence 46888 4568899999999999999754 3466888999999999999954 78889999999999999864 4
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe---CCCcE
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS---HDSML 147 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i 147 (203)
.+-.+. |...|+++ |+.+|.++++.+.|..|+|||.++++.+..-.+|.+..-..+.|-.++..+.+|. .++.+
T Consensus 166 ali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~ 243 (472)
T KOG0303|consen 166 ALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQI 243 (472)
T ss_pred eeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccce
Confidence 444444 88999999 9999999999999999999999999999988888776666778888888554444 57889
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
-+||..+.+..
T Consensus 244 aLwdp~nl~eP 254 (472)
T KOG0303|consen 244 ALWDPNNLEEP 254 (472)
T ss_pred eccCcccccCc
Confidence 99998877655
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=123.85 Aligned_cols=146 Identities=15% Similarity=0.261 Sum_probs=116.4
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe------EE----E-----eecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNT------VQ----T-----RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~------~~----~-----~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
.|+++++|+.||.|.|||++... ++ . .-.+|...|..+.|-| |.-.+.+++.|.++++||..+.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 57899999999999999997521 11 1 1135777899999999 5667888999999999999764
Q ss_pred cccceeeeccCCCceeEE-Eee---CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe-EEEEeCC
Q 028806 70 KDCSDRFVGLSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSISHD 144 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d 144 (203)
+....|+ -++.|++- ++| ...+|++|..+-.|++.|+.+|....++.+|.+ .|.++.|+|...+ |++|+.|
T Consensus 135 -Q~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 135 -QEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred -eeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEeccCceeEEEecCCC
Confidence 3334444 35566666 666 345777888899999999999999999999977 8999999997765 6799999
Q ss_pred CcEEEEeCCCc
Q 028806 145 SMLKLWDLDDI 155 (203)
Q Consensus 145 ~~i~iwd~~~~ 155 (203)
|.|++||++.-
T Consensus 211 g~irlWDiRra 221 (397)
T KOG4283|consen 211 GAIRLWDIRRA 221 (397)
T ss_pred ceEEEEEeecc
Confidence 99999999765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=122.82 Aligned_cols=150 Identities=16% Similarity=0.230 Sum_probs=123.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|.|+|.++.|++++.||++++|++........++ |..++.+++|.+ ...+++|+-||.|+++|+.+. ....+-. |
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--~~~~igt-h 93 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--NEDQIGT-H 93 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC--cceeecc-C
Confidence 4688888999999999999999999875555554 788999999986 567899999999999999753 3334555 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..+++++ +.+....+++|+.|+.|++||.+.......+... . .|.++.. .+..|++|+.+..+.+||++++....
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-k-kVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-K-KVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-c-eEEEEec--cCCEEEEeecCceEEEEEcccccchh
Confidence 9999999 8888899999999999999999875555555444 3 6887766 67789999999999999999987544
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=127.32 Aligned_cols=140 Identities=16% Similarity=0.251 Sum_probs=118.6
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC----CCc
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS----PNS 83 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~----~~~ 83 (203)
..+++|..|++|++||+++..+......+. .|+++..++++..|.+++.|.++.+.|+++ ....+.+.. . ...
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA-~g~k~asD 389 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSA-EGFKCASD 389 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccc-ccEEEEeec-cccccccc
Confidence 346678889999999999998888887654 899999999999999999999999999985 355555543 1 122
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC-ceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
.+.+ |+|++.|+++|+.||.|+||++.++++...+...+.. .|++++|+|.|.+|++++.++.+.+|
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 4444 9999999999999999999999999999888766442 69999999999999999999999999
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-18 Score=118.19 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=120.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcc-ccceeeecc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-DCSDRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~ 79 (203)
-|+.||+++.|++|+|+..+.+ +++.++.+|.++|+.++|.. .|.+|++++.||.|.+|.-.+.. ........
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-
Confidence 4789999999999999999853 56789999999999999975 78999999999999999876421 12233455
Q ss_pred CCCceeEE-Eee--CCCEEEEEcCCCcEEEEEccCC---ceeeeeccCCCCceEEEEEeCC---C-----------CeEE
Q 028806 80 SPNSVDAL-LKL--DEDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLALSHD---R-----------KFLG 139 (203)
Q Consensus 80 ~~~~v~~~-~~~--~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~i~~i~~~~~---~-----------~~l~ 139 (203)
|...+.++ |-| -|-.|++++.||.|.|.+.++. ........|.- .|++++|.|- | ..|+
T Consensus 101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-ccceeeecCcCCCccccccCcccccceee
Confidence 88899999 755 5678889999999999988653 23345677854 7999999995 4 5699
Q ss_pred EEeCCCcEEEEeCCCc
Q 028806 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
+|+.|..|+||+....
T Consensus 180 SgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFDSD 195 (299)
T ss_pred ccCCccceeeeecCCc
Confidence 9999999999998774
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=123.29 Aligned_cols=151 Identities=19% Similarity=0.269 Sum_probs=131.8
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
|-..|+.+++++.|.+..+||++++.++..+.+|....+.+.-+|..+++++++.|.+.++||++..-..+..|.+ |..
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-Htd 358 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HTD 358 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-ccc
Confidence 5567889999999999999999999999999999999999999999999999999999999999855566788999 999
Q ss_pred ceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 83 SVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 83 ~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.|++.....+..+++|+.|.+|++||+++. .++.+++.. .++..++.+..+..|+.--.++.|++||+....
T Consensus 359 tVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 359 TVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred ceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecC--CccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 999993344567899999999999999875 577788765 278999999888888888888999999997643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=131.40 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=127.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD------ 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~------ 74 (203)
|+.|||.+..+++..||.|.|||+.+...++.+++|...+.||.++++|..|.+|+-|++|+.||++...+..+
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQ 594 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQ 594 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999975321110
Q ss_pred ---------------------------------eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc
Q 028806 75 ---------------------------------RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (203)
Q Consensus 75 ---------------------------------~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 120 (203)
.+.. |...|.++ |.+.|+++++.+.|..+..|...-|..+...+.
T Consensus 595 IfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl-heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE 673 (705)
T KOG0639|consen 595 IFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE 673 (705)
T ss_pred heecccCCCccceeeecccCcEEEEecCCccceeecc-cccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc
Confidence 0112 56678888 999999999999999999998877777766665
Q ss_pred CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 121 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. .+|.++.++.|.+||++|+.|..-.||.+
T Consensus 674 ~--SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 S--SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred c--CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4 37999999999999999999998888865
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-18 Score=121.50 Aligned_cols=156 Identities=14% Similarity=0.169 Sum_probs=121.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE-EEeec-----CCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSE-----FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
+.|.|++..|++-. +..|.+|++..+.. ...+. .+....++-+|+| +++.+++.+ ++++..||+++....
T Consensus 129 vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 129 VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhh
Confidence 35899999988875 78999999987644 33332 2455678889998 677777754 789999999965444
Q ss_pred ceeeeccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCC-CCeEEEEeCCCcEE
Q 028806 73 SDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHD-RKFLGSISHDSMLK 148 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~ 148 (203)
...-.. |...++.+ |+|+-. +|++++.||.|++||.+. ..+++.+..|.. .|+++.|+|. .++|++++.|..|.
T Consensus 207 ~sI~dA-Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 207 NSIEDA-HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH-WVWAVRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred cchhhh-hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce-EEEEEEecCccceEEEecCCCceeE
Confidence 444455 88899999 999765 567888899999999885 468889999965 8999999994 47788999999999
Q ss_pred EEeCCCcccCCC
Q 028806 149 LWDLDDILKGSG 160 (203)
Q Consensus 149 iwd~~~~~~~~~ 160 (203)
+|-...-..+++
T Consensus 285 Lsca~svSSE~q 296 (370)
T KOG1007|consen 285 LSCASSVSSEQQ 296 (370)
T ss_pred EEeccccccccc
Confidence 998866554443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-17 Score=114.46 Aligned_cols=147 Identities=19% Similarity=0.226 Sum_probs=125.7
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-------CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-------SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
+-++-++++|+.|.+|++||++-+.++.++.. ..+.|.+++..|.|++|++|-.|....+||++ .+++++.+
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir-g~r~iq~f 269 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR-GGRMIQRF 269 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee-CCceeeee
Confidence 44677899999999999999998877776642 23578999999999999999999999999998 57899999
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC----ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN----RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. |...|+++ |+|...++++++.|..|++-|++.. -++.....|.+ .+..+.|+|..--+++.+.|.+..+|-
T Consensus 270 ~p-hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd-k~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 270 HP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD-KAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred CC-CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC-ceEEEEecCccceeeeccCcceEEEec
Confidence 99 99999999 9999999999999999999998632 23444556755 677789999998899999999999997
Q ss_pred CC
Q 028806 152 LD 153 (203)
Q Consensus 152 ~~ 153 (203)
+.
T Consensus 348 ~~ 349 (350)
T KOG0641|consen 348 LN 349 (350)
T ss_pred cC
Confidence 64
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-19 Score=125.94 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=128.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcC------Cc------------
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG------YF------------ 69 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~------~~------------ 69 (203)
..+.+++.|.+.+||.++++.++..+.+|.+.|++++|++.+.++++++.|++..||... ..
T Consensus 161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 467888999999999999999999999999999999999999999999999999999731 10
Q ss_pred ---------------------cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceE
Q 028806 70 ---------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127 (203)
Q Consensus 70 ---------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~ 127 (203)
..++..+.+ |...|.+. |-..|+.+++++.|++..+||+++|+.+..+.+|.. ..+
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELt 318 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS-ELT 318 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch-hcc
Confidence 113344567 77788888 888899999999999999999999999999999954 788
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 128 SLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 128 ~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.++-+|..+++++.+.|.+.++||++..
T Consensus 319 HcstHptQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred ccccCCcceEEEEeccCceeEeccchhh
Confidence 8999999999999999999999999844
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=119.21 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=120.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC--EEEEecCCCeEEEEEcCCccccceeee-
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
++|+-+|..+++|+-|+.+++||+.+++. ..+..|..+|..+.|-+... .|++|+.|.+|++||++.. .++.++.
T Consensus 78 v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~L 155 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQL 155 (347)
T ss_pred EEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeeec
Confidence 47999999999999999999999999965 56677999999999987665 8999999999999999853 2222110
Q ss_pred ------------------------------------c---cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--cee
Q 028806 78 ------------------------------------G---LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RII 115 (203)
Q Consensus 78 ------------------------------------~---~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~--~~~ 115 (203)
. .....++|+ +.++....+.|+.+|.+.+..+..+ +.-
T Consensus 156 PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 156 PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 0 012346777 6777777899999999999888776 444
Q ss_pred eeeccCCC--------CceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 116 QPIAEHSE--------YPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 116 ~~~~~~~~--------~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+++.|.. .+|.+|+|+|.-..|++++.||++.+||-..
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 56666642 3578899999989999999999999999644
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-17 Score=114.55 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=105.7
Q ss_pred CcccccCCEEEEEcC----------CCeEEEEEcCC-CeEEEeecC-CccceEEEEEeeCCCEEEEe--cCCCeEEEEEc
Q 028806 1 MTFAADAMKLLGTSG----------DGTLSVCNLRK-NTVQTRSEF-SEEELTSVVLMKNGRKVVCG--SQSGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~----------d~~i~vw~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~i~~wd~ 66 (203)
|.|+|+|.+|+.-.. -+...+|-++. +.....+.- ..++|.+++|+|+++.|++. ..+..+.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 469999998765432 13344555432 223333332 34569999999999887544 45679999999
Q ss_pred CCccccceeeeccCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
. ...+..+ ....+..+ |+|+|++|++++. .|.|.+||+++.+.+...... .+..++|+|+|++|+++.
T Consensus 91 ~--~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~---~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 91 K--GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS---DATDVEWSPDGRYLATAT 162 (194)
T ss_pred c--ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC---cEEEEEEcCCCCEEEEEE
Confidence 6 3444444 34556678 9999999999864 467999999988888766533 478999999999999887
Q ss_pred C------CCcEEEEeCCCcc
Q 028806 143 H------DSMLKLWDLDDIL 156 (203)
Q Consensus 143 ~------d~~i~iwd~~~~~ 156 (203)
. |+.++||+.....
T Consensus 163 t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred eccceeccccEEEEEecCeE
Confidence 4 7889999986543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=134.37 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=86.4
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeecc--CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceE
Q 028806 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127 (203)
Q Consensus 51 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~ 127 (203)
++++++.|..|+||++.. ++..+.|++. +.+..-.+ ..|.|.|+++.+.|.++.++|+-+|+++.++.+|.+ .|+
T Consensus 610 ~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-~VT 687 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-AVT 687 (1080)
T ss_pred eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch-hee
Confidence 677778888888888874 5666777652 33444445 799999999999999999999999999999999977 899
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 128 SLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 128 ~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+.|.+|.++|++.+.||.|.||.+..
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999998653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=121.75 Aligned_cols=145 Identities=9% Similarity=0.198 Sum_probs=112.8
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC--ccccce
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKDCSD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~~~~ 74 (203)
|+|||.. ..+++|+-||+|+|||++.+ .++ ..+.|.+-|+-|.|+....+|++|+.||+++|||++. .+.++.
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce
Confidence 5799965 47899999999999999986 233 3378999999999999888999999999999999975 346788
Q ss_pred eeeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCc-------------------eeeeeccCCCCceEEEEEeC
Q 028806 75 RFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNR-------------------IIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~-------------------~~~~~~~~~~~~i~~i~~~~ 133 (203)
.|+- |..+|+++ |+|. ...|++++.|..|.+||+.... .++...+. ..+..+.|++
T Consensus 342 ~fk~-Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ--ke~KevhWH~ 418 (440)
T KOG0302|consen 342 TFKY-HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ--KEVKEVHWHR 418 (440)
T ss_pred eEEe-ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch--hHhhhheecc
Confidence 8998 99999999 9985 5667788889999999985211 12222222 2578899998
Q ss_pred CC-CeEEEEeCCCcEEEE
Q 028806 134 DR-KFLGSISHDSMLKLW 150 (203)
Q Consensus 134 ~~-~~l~~~~~d~~i~iw 150 (203)
.- -+|++.+.|| +.||
T Consensus 419 QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 419 QIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CCCCeEEEecccc-eeEE
Confidence 65 4677777776 4444
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-19 Score=123.55 Aligned_cols=147 Identities=16% Similarity=0.223 Sum_probs=128.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
....|+++.|-+.+|||.-+|..+..++ |.-.|..++|+.|.++|++|+.+..+++||++....+...+.+ |.+.|+.
T Consensus 71 a~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g-htg~Ir~ 148 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG-HTGGIRT 148 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC-CCCccee
Confidence 3345777889999999999988877765 6778999999999999999999999999999877777888899 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+ |....+.|++++.++.|++||.+++..++++.... +|.++.++++|++|.++ ..+.|.+||..+...-
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLL 218 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEe-cCceeEEeccccccce
Confidence 9 88888899999999999999999999999987663 79999999999987665 4678999999887544
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-18 Score=130.99 Aligned_cols=137 Identities=20% Similarity=0.322 Sum_probs=121.1
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEE
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL 88 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
.|++|+.|.+++||-.. ++...+++|...|+.++.-|.+ .++||+.|.+|++|.- +..+++|.+ |...|+.+.
T Consensus 114 ~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~g-HtD~VRgL~ 186 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSG-HTDCVRGLA 186 (745)
T ss_pred ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhhhcc-chhheeeeE
Confidence 38999999999999864 4556689999999999999877 8899999999999974 678899999 999999995
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 89 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
--+...+++++.||.|++|++ +|+.+..+.+|+. -|+++...+++..+++++.|++++||+...
T Consensus 187 vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred EecCCCeEeecCCceEEEEec-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence 445567899999999999998 7899999999966 799999888889999999999999998763
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=117.31 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=123.2
Q ss_pred ccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC---CCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 3 FAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 3 ~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|-| |..++.+++-|.+++|||..+.+....++ .++.|.+-+++|= ..++++|..+-.|++.|+. .+..-+.+.+
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~LsG 186 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTLSG 186 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeeecc
Confidence 444 44577788899999999999988776665 3577888899883 4577788889999999997 5788999999
Q ss_pred cCCCceeEE-EeeCCCE-EEEEcCCCcEEEEEccCC-ceeee--------------eccCCCCceEEEEEeCCCCeEEEE
Q 028806 79 LSPNSVDAL-LKLDEDR-VITGSENGLISLVGILPN-RIIQP--------------IAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~-l~~~~~d~~i~~~d~~~~-~~~~~--------------~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
|...|.++ |+|...+ |++|+.||.|++||++.. .+... -..|.+ .+..++|..++.+++++
T Consensus 187 -Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g-kvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 187 -HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG-KVNGLAWTSDARYLASC 264 (397)
T ss_pred -ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccc-eeeeeeecccchhhhhc
Confidence 99999999 9998776 557888999999999743 22222 234433 79999999999999999
Q ss_pred eCCCcEEEEeCCCcccC
Q 028806 142 SHDSMLKLWDLDDILKG 158 (203)
Q Consensus 142 ~~d~~i~iwd~~~~~~~ 158 (203)
+.|..+++|+..++...
T Consensus 265 gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNT 281 (397)
T ss_pred cCccceEEeecccCccc
Confidence 99999999999887654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.6e-17 Score=111.79 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=121.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC---------C-eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRK---------N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
+|+|.+++|++|..+|.|.+..+.. + ..+...++|.++|+.++|+ ..+|++++ ||.|+-|..+...+
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhh
Confidence 6899999999999999999999863 1 2334557899999999998 34666665 59999998853211
Q ss_pred ------cceeeecc-----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 72 ------CSDRFVGL-----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 72 ------~~~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
.++..... ....|.++ ..|..+-+++++.|+.++.||+++|+...++++|++ -|.++.--.....++
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-YvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-YVHSVVGRNANGQIL 172 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-eeeeeeecccCccee
Confidence 11111110 23457788 688888888888999999999999999999999988 699988855556788
Q ss_pred EEeCCCcEEEEeCCCcccCCC
Q 028806 140 SISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+|+.||++++||+++.+.-+.
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred ecCCCccEEEEeccccceeEE
Confidence 999999999999999876644
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-17 Score=116.41 Aligned_cols=145 Identities=16% Similarity=0.250 Sum_probs=121.9
Q ss_pred EEEEEcCCCeEEEEEcCCC------------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 9 KLLGTSGDGTLSVCNLRKN------------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
.|++|++...|.=+.+... .++..+..|.+.|++++. ++.++++|+.|-+|++||++. ...+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k-~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK-RKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccc-hhhhcce
Confidence 4678888777776665421 123455678999999987 588999999999999999985 4666777
Q ss_pred eccCCCceeEE-EeeCCC--EEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPNSVDAL-LKLDED--RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.. |.+.++++ |.++-. .|++|+.||.|.+|+.....++..++.|.. .|+.++.+|.+++.++.+.|+.+++|++-
T Consensus 80 l~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 80 LS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhh
Confidence 77 99999999 877654 899999999999999999999999999977 79999999999999999999999999998
Q ss_pred CcccC
Q 028806 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 158 ~Gr~a 162 (362)
T KOG0294|consen 158 RGRVA 162 (362)
T ss_pred cCccc
Confidence 77543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=123.56 Aligned_cols=154 Identities=14% Similarity=0.246 Sum_probs=126.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-EEEeecCC-ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|||+.+.+.||.+-.+|.|.+|++..+- +...+.++ ...|.+++|.+ +..|++.+.+|.|..||+.+ ..+...+..
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~-lk~~~~~d~ 108 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT-LKQKYNIDS 108 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc-CceeEEecC
Confidence 5889999999999999999999998753 33445544 45799999995 55678888899999999985 456666777
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee--ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI--AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+.++++ .+|.+..++.||.||.+..++..+++..... ... .++|.++.|+|++..|+.|+.||.|++||+..+
T Consensus 109 -~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq-~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 109 -NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ-KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred -CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc-cceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence 78899999 7999999999999998888887777665432 233 248999999999999999999999999999877
Q ss_pred ccC
Q 028806 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
..-
T Consensus 187 ~t~ 189 (691)
T KOG2048|consen 187 QTL 189 (691)
T ss_pred ceE
Confidence 644
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=122.25 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=123.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee-----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----- 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~----- 75 (203)
|+|+++|..|++++.||++|||+.+....+.....|...|.++.|+||+++|++.+.+ ..+||++... ..+..
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~~~ 227 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTPFS 227 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCCcc
Confidence 5799999999999999999999988877777777888999999999999999999999 8999999753 11100
Q ss_pred ---------------------ee--------------ccC-------------CCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028806 76 ---------------------FV--------------GLS-------------PNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 76 ---------------------~~--------------~~~-------------~~~v~~~-~~~~~~~l~~~~~d~~i~~ 106 (203)
+. .++ ...+.++ .+++|++++.|+.+|.|.+
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 00 000 2356777 7999999999999999999
Q ss_pred EEccCCceeeeec-cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 107 VGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 107 ~d~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
++..+-+.++..+ .| ..-|+.+.|+|+.+++++.+.+..+.+..+.-
T Consensus 308 ~~~~~lq~~~~vk~aH-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 308 YDAKSLQRLQYVKEAH-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEeceeeeeEeehhhh-eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9998877776654 55 44899999999999999999898888887754
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=123.43 Aligned_cols=151 Identities=13% Similarity=0.285 Sum_probs=131.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----Ee---e-----------cCCccceEEEEEeeCCCEEEEecCCCeEE
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TR---S-----------EFSEEELTSVVLMKNGRKVVCGSQSGTVL 62 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~----~~---~-----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 62 (203)
|+++|+.+++++++.+++|.-|++.+++.. .. + +.|...+.+++.++|+++|++|+.|..|.
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~ 227 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQ 227 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEE
Confidence 468999999999999999999999876532 11 0 25677899999999999999999999999
Q ss_pred EEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 63 ~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
||+..+ ...++.+.+ |.+.|.++ |-.....+++++.|+.|++|++.....+.++.+|.+ .|..|.-..-++.+.+|
T Consensus 228 Iw~~~t-~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~IdaL~reR~vtVG 304 (479)
T KOG0299|consen 228 IWDCDT-LEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDALSRERCVTVG 304 (479)
T ss_pred EecCcc-cchhhcccc-cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeechhcccceEEec
Confidence 999985 678888999 99999999 776777899999999999999998888999999966 78888887788888888
Q ss_pred eCCCcEEEEeCCC
Q 028806 142 SHDSMLKLWDLDD 154 (203)
Q Consensus 142 ~~d~~i~iwd~~~ 154 (203)
+.|+++++|++..
T Consensus 305 grDrT~rlwKi~e 317 (479)
T KOG0299|consen 305 GRDRTVRLWKIPE 317 (479)
T ss_pred cccceeEEEeccc
Confidence 8999999999943
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=129.11 Aligned_cols=153 Identities=12% Similarity=0.212 Sum_probs=123.2
Q ss_pred ccccCCEEEE--EcCCCeEEEEEcCCC-eE----EEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcc----
Q 028806 3 FAADAMKLLG--TSGDGTLSVCNLRKN-TV----QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK---- 70 (203)
Q Consensus 3 ~sp~~~~l~~--~~~d~~i~vw~~~~~-~~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~---- 70 (203)
|+.+.+.+|+ ++.-|.|-||++... ++ +-.+. ....|+.+.|.| |...|++++.||.|++|.+...+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3444455544 344689999999753 21 11222 356799999999 77899999999999999996533
Q ss_pred --ccceeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 71 --DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 71 --~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
.+...++. |...|+++ |+| -...|++++.|-+|++||+++++....+.+|++ .|..++|+|+|+.+++.+.||+
T Consensus 666 ~~tPe~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 666 EMTPEKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred cCCcceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCce
Confidence 23445677 89999999 998 457888999999999999999999999999987 8999999999999999999999
Q ss_pred EEEEeCCCcccC
Q 028806 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
|++|..+..++.
T Consensus 744 ~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 744 LRVYEPRSREQP 755 (1012)
T ss_pred EEEeCCCCCCCc
Confidence 999999887654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-16 Score=113.25 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=120.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecC---CccceEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccceeeeccCC
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.+.|+++-. ..|+|||+.+.+++.++.. +...+..+.+++.+.+++.-+ ..|.|.+||+.+ -..+..+.. |.
T Consensus 97 r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a-H~ 173 (391)
T KOG2110|consen 97 RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA-HK 173 (391)
T ss_pred cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe-cC
Confidence 445666555 4599999999988887753 344566666666667887643 368999999975 467778888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCc-EEEEEccCCceeeeeccCCC-CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 82 NSVDAL-LKLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+++.++ |+++|.+|++++..|+ |+|+.+.+|+.+..++.... ..|.+++|+|++++|++.+..++|++|.+....
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 999999 9999999999999987 89999999999999976643 268899999999999999999999999997765
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=116.13 Aligned_cols=146 Identities=14% Similarity=0.226 Sum_probs=113.8
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcccccee-eeccCCC-c
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVGLSPN-S 83 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~-~ 83 (203)
..+|++-..|.|++||..+++.+..++++...+..++|.. ....+.+++.||+|++||++...+.-+. +.. +.+ +
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~-~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ-QSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC-CCCCc
Confidence 4578888889999999999999999999999999999987 5678999999999999999865443332 233 332 3
Q ss_pred eeEE-EeeCCCEEEEEcC----CCcEEEEEccCCce-eeee-ccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028806 84 VDAL-LKLDEDRVITGSE----NGLISLVGILPNRI-IQPI-AEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~----d~~i~~~d~~~~~~-~~~~-~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
..++ .+-.++.+++|+. +-.|.+||++..+. +..+ ..|.+ .|+++.|+|.. +.|++|+.||.|.+||+...
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 3344 3446777777764 45689999998665 4444 56655 89999999955 78999999999999999765
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=128.97 Aligned_cols=154 Identities=15% Similarity=0.213 Sum_probs=123.3
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
+.|.| |...||+++.||.|++|.+..+ .+...++.|...|+++.|+| -...|++++.|.+|++||+.+ ..
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~ 711 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN-AK 711 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh-hh
Confidence 35777 6678999999999999998753 34467788999999999999 446889999999999999985 45
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCCceEEEEEeCCCCeEEEEeCC----C
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSHDRKFLGSISHD----S 145 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~ 145 (203)
....+.+ |...|..+ |+|+|+.+++.+.||+|++|..++++ ++..-.+.-+..--.|.|..+|+++++.+.| +
T Consensus 712 ~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeR 790 (1012)
T KOG1445|consen 712 LYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSER 790 (1012)
T ss_pred hhheecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchh
Confidence 6677889 99999999 99999999999999999999988764 3333333222234568899999999887755 4
Q ss_pred cEEEEeCCCcc
Q 028806 146 MLKLWDLDDIL 156 (203)
Q Consensus 146 ~i~iwd~~~~~ 156 (203)
.|.+||..+..
T Consensus 791 Qv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 791 QVQMYDAQTLD 801 (1012)
T ss_pred hhhhhhhhhcc
Confidence 58888876554
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=119.96 Aligned_cols=151 Identities=11% Similarity=0.077 Sum_probs=113.1
Q ss_pred CcccccC--CEEEEEcCCCeEEEEEcCCC----eEEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCc----
Q 028806 1 MTFAADA--MKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYF---- 69 (203)
Q Consensus 1 l~~sp~~--~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~---- 69 (203)
|+|+|.. +++|+|..-|.|-+||+.+. ..+..+..|..+|.+|.|+|. ...+++.+.||+|++-|+...
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 5788865 47888999999999999532 234566789999999999994 467888888999888776421
Q ss_pred ----------------------------------------cccceeeeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEE
Q 028806 70 ----------------------------------------KDCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLV 107 (203)
Q Consensus 70 ----------------------------------------~~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~ 107 (203)
+.....+.. |...|..+ ++|. ..+|++++.|++++||
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l-h~kKI~sv~~NP~~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL-HKKKITSVALNPVCPWFLATASLDQTAKIW 350 (498)
T ss_pred HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-hhcccceeecCCCCchheeecccCcceeee
Confidence 111111222 55578888 7885 4568899999999999
Q ss_pred EccCCc----eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 108 GILPNR----IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 108 d~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
|++.-. ++.....|.. .|.++.|+|.+-.|++.+.|..|+|||..
T Consensus 351 D~R~l~~K~sp~lst~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 351 DLRQLRGKASPFLSTLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ehhhhcCCCCcceecccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 998532 2233445644 89999999988779999999999999984
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=119.86 Aligned_cols=152 Identities=22% Similarity=0.297 Sum_probs=121.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEEEecCCCeEEEEEcCC-----ccccce
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----~~~~~~ 74 (203)
++|+.+++.|++++.+|.|.+||++...++..+.... -.-++++.++++.+|++|+..|.|.|||..+ ...++.
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 4689999999999999999999999988887775422 2235677788999999999999999999642 234555
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCC--CceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSE--YPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.+.. -...|.++ |+|+..+|+.++. ...+++..+.+......++.... ..++||+|+|.+-+||.|...|.+.+
T Consensus 430 ~~dN-Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l 508 (514)
T KOG2055|consen 430 TVDN-LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHL 508 (514)
T ss_pred hhhh-hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceee
Confidence 5555 56688999 9999999998876 56789888877665555543321 36899999999999999999999999
Q ss_pred EeCC
Q 028806 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
|.+.
T Consensus 509 ~kL~ 512 (514)
T KOG2055|consen 509 FKLH 512 (514)
T ss_pred Eeec
Confidence 9874
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-15 Score=112.70 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=113.7
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|+++.+ ++++.++.|++|++.+++.+..+..+.. +..++|+|+++.++++ ..++.+++||+.. ...+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~ 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC
Confidence 4689999876 5667889999999999887776665433 5678999999877655 5689999999975 344555543
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
...+..+ |+|++.+++++..++ .+.+||..+++.+..+... . .+.+++|+|++++|++++ .++.|++||+.++
T Consensus 114 --~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 114 --GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-Q-RPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred --CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-C-CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 2345667 899999999888765 4677898887766554433 2 457899999999886554 6899999999887
Q ss_pred cc
Q 028806 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
..
T Consensus 190 ~~ 191 (300)
T TIGR03866 190 KV 191 (300)
T ss_pred ee
Confidence 54
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=112.46 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=121.2
Q ss_pred cccc--cCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeee
Q 028806 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+||| +|+.+++. .|++++.||+++......++ .|...|..+.|+|+.+ +|++++.||.|++||.+..+.++..+.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 5887 67777776 56999999999876655554 6888999999999764 678899999999999998888999999
Q ss_pred ccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCC-----------------------------ceeeeeccCCCCce
Q 028806 78 GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPN-----------------------------RIIQPIAEHSEYPI 126 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~-----------------------------~~~~~~~~~~~~~i 126 (203)
+ |...++++ |+|. ..+|++++.|..|.+|...+- ..+.++..|.+ .|
T Consensus 256 ~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SV 333 (370)
T KOG1007|consen 256 G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SV 333 (370)
T ss_pred C-CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ce
Confidence 9 99999999 9884 567889999999999875320 12345566755 79
Q ss_pred EEEEEeCCCC-eEEEEeCCCcEEEEeCCCcc
Q 028806 127 ESLALSHDRK-FLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 127 ~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~ 156 (203)
++++|+.-.. .+|+-+.||.+.|=.+....
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V~r~~ 364 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSVPRFL 364 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecCChhh
Confidence 9999988555 56788899999887665443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-17 Score=122.03 Aligned_cols=150 Identities=13% Similarity=0.141 Sum_probs=114.6
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEE----------------------------------------
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV---------------------------------------- 44 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~---------------------------------------- 44 (203)
....++++|+..+.|+|||++...+.+.++.|...|+++.
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 3457899999999999999986555555555555555544
Q ss_pred ---EeeCCC-EEEEecCCCeEEEEEcCCcccccee-eeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeee
Q 028806 45 ---LMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDR-FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQP 117 (203)
Q Consensus 45 ---~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~ 117 (203)
++|..+ +|.+++.+|.|.+||+.. ..+... ... |..+...+ |+|. ..+|++.+.|..|.+||.++......
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g-~sp~~~~~~~-HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQG-MSPIFHASEA-HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccC-CCcccchhhh-ccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence 444332 455678889999999864 344433 344 88888888 8885 56677889999999999998777777
Q ss_pred eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 118 IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 118 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+.... +...++|.++|.+|+.|...|.|..||++.....
T Consensus 247 l~y~~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 247 LTYSH--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred eeecC--CcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 76542 7899999999999999999999999999876543
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-16 Score=122.37 Aligned_cols=140 Identities=13% Similarity=0.183 Sum_probs=120.1
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
|++ .+++|+.|.+|++|.- ++.+.++.+|...|+.+++.+++ .|++++.||.|++|++. +.++..+.+ |..-+
T Consensus 150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~--ge~l~~~~g-htn~v 222 (745)
T KOG0301|consen 150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD--GEVLLEMHG-HTNFV 222 (745)
T ss_pred CCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc--Cceeeeeec-cceEE
Confidence 444 8899999999999985 67888999999999999999765 57889999999999994 688888999 99999
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+++ ..+++..+++++.|+++++|+.. ++.+.+...+. .|+++.+-++|. |++|+.||.|+||..+.-
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt-siWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT-SIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc-ceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 999 68888999999999999999965 67777776644 799999998886 467778999999987643
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=124.85 Aligned_cols=154 Identities=18% Similarity=0.295 Sum_probs=128.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
|+|.|+|++|++++.||.|++|+.... .....+..+...|.+++. .+.+|++++.+++|.+|.+.. +..-..+..
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps-~~~~~iL~R- 94 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS-GEEDTILAR- 94 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC-CCccceeee-
Confidence 468999999999999999999997654 333344446677777765 456999999999999999974 333334444
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..-+++++ ++.+|++++.|+.|-.|++.++........+++|.. +|.++.|+|++.+||+.+.||.|++|++.++...
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 56688888 899999999999999999999999999999999955 9999999999999999999999999999877654
Q ss_pred C
Q 028806 159 S 159 (203)
Q Consensus 159 ~ 159 (203)
.
T Consensus 174 ~ 174 (933)
T KOG1274|consen 174 K 174 (933)
T ss_pred h
Confidence 3
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=114.47 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=118.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc-CCCeE--E-Eee----cCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNL-RKNTV--Q-TRS----EFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~-~~~~~--~-~~~----~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
|+|+|||.+|++|.. ..|+|+|+ +.|+. + .++ .+..+.|.+++|+|- ...+++++.-..+-+|.-. ...
T Consensus 164 L~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~ 241 (406)
T KOG2919|consen 164 LQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRR 241 (406)
T ss_pred EEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCC
Confidence 579999999998754 89999999 44421 1 111 133567899999994 4588999988888887765 467
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccC-CceeeeeccCCC---CceEEEEEeCCCCeEEEEeCCC
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILP-NRIIQPIAEHSE---YPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~-~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
++..+-+ |.+.|+.+ |.++|+.|++|.. +-.|..||++. ..++..+..|.+ .+| -....|.+++|++|+.||
T Consensus 242 pl~llgg-h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 242 PLQLLGG-HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDG 319 (406)
T ss_pred ceeeecc-cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceE-EEecCCCCceeeccCCCc
Confidence 8888889 99999999 9999999999987 56799999985 456666666643 133 346678999999999999
Q ss_pred cEEEEeCCCcc
Q 028806 146 MLKLWDLDDIL 156 (203)
Q Consensus 146 ~i~iwd~~~~~ 156 (203)
.|++||+...-
T Consensus 320 ~V~vwdlk~~g 330 (406)
T KOG2919|consen 320 SVRVWDLKDLG 330 (406)
T ss_pred cEEEEecCCCC
Confidence 99999998843
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-17 Score=119.61 Aligned_cols=126 Identities=11% Similarity=0.134 Sum_probs=108.9
Q ss_pred eecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcc------ccceeeeccCCCceeEE-EeeC-CCEEEEEcCCC
Q 028806 32 RSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK------DCSDRFVGLSPNSVDAL-LKLD-EDRVITGSENG 102 (203)
Q Consensus 32 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~ 102 (203)
.+.+|.++|..++|+| +.+.+++|+.|.+|.||.+...+ .++..+.+ |...|..+ |+|. .+.|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCc
Confidence 4458999999999999 45778899999999999996432 44567788 99999988 9985 56788999999
Q ss_pred cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 103 LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.|.+|++.+|+.+.++. |.+ -|+++.|+.+|.+|++.+.|..|+|||.+++..-++
T Consensus 155 ~v~iWnv~tgeali~l~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred eEEEEeccCCceeeecC-CCC-eEEEEEeccCCceeeeecccceeEEEcCCCCcEeee
Confidence 99999999999988887 766 799999999999999999999999999999876544
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-16 Score=111.71 Aligned_cols=152 Identities=15% Similarity=0.234 Sum_probs=117.9
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
+++-...+++|+.|++|++||.+.......+.. ...|.++.. .++.|++|+.+..+.+||+++.....+.-...-..
T Consensus 102 ~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lky 178 (323)
T KOG1036|consen 102 YSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKY 178 (323)
T ss_pred eeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhcccccee
Confidence 455567899999999999999987555555544 347888765 47789999999999999998755444332221456
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCC----ceeeeeccCCC--------CceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 83 SVDAL-LKLDEDRVITGSENGLISLVGILPN----RIIQPIAEHSE--------YPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~--------~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.++++ +.|++.-+++++.+|.|.+=.+... +....++.|.. .+|.+|+|+|--..|+||+.||.|.+
T Consensus 179 qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~ 258 (323)
T KOG1036|consen 179 QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI 258 (323)
T ss_pred EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE
Confidence 78899 7899999999999999988766654 34455666642 37999999999899999999999999
Q ss_pred EeCCCccc
Q 028806 150 WDLDDILK 157 (203)
Q Consensus 150 wd~~~~~~ 157 (203)
||+.+...
T Consensus 259 Wd~~~rKr 266 (323)
T KOG1036|consen 259 WDLFNRKR 266 (323)
T ss_pred ccCcchhh
Confidence 99977653
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-17 Score=118.08 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=120.2
Q ss_pred cccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 4 AADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 4 sp~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
+|.. ..+++|+.||.|++||+.+..+..+++.|.+.|..|++.. ..+++++.|.+|+.|.+. +.+++++.+ ..
T Consensus 75 hp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~--~~p~~tilg--~s 148 (433)
T KOG0268|consen 75 HPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID--GPPLHTILG--KS 148 (433)
T ss_pred CcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc--CCcceeeec--cc
Confidence 4444 5689999999999999999999999999999999999976 678899999999999986 356666664 45
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEEeCCCcccCC
Q 028806 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
.+..+ -+..+..+++++. .|.|||.+-..++..+.-..+ .|.++.|+|... .|++++.|+.|.+||+++..+-.
T Consensus 149 ~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~ 224 (433)
T KOG0268|consen 149 VYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASCASDRSIVLYDLRQASPLK 224 (433)
T ss_pred cccccccccccccccccCc--eeeecccccCCccceeecCCC-ceeEEecCCCcchheeeeccCCceEEEecccCCccc
Confidence 55666 4556677777776 488999988888888887766 799999999764 56777799999999999887653
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-16 Score=115.51 Aligned_cols=156 Identities=17% Similarity=0.260 Sum_probs=123.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--CeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCcc-------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFK------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~------- 70 (203)
|.|+|....|++++.|++++||.+.. +..++.+.-...+|.+..|.|+|. .+++++....++.||+.+.+
T Consensus 219 v~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 219 VQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred EEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence 46899999999999999999999864 455666666678999999999998 88889999999999996421
Q ss_pred -----ccceeee-----------c-------------------cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028806 71 -----DCSDRFV-----------G-------------------LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 71 -----~~~~~~~-----------~-------------------~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
+.++.|. + -..+.+..+ |+.+++.|++++.+|.|.+||++...+
T Consensus 299 ~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 299 YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence 0111110 0 013456777 889999999999999999999999988
Q ss_pred eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 115 IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 115 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+..+.....-.-++++.++++.|||+|+..|.|.|||..+..
T Consensus 379 ~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 379 LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 888876533244678888999999999999999999965543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=111.50 Aligned_cols=146 Identities=15% Similarity=0.212 Sum_probs=118.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeE--EEeecCCccceEEEEEeeCC--CEEEEecCCCeEEEEEcCCcc-c-cceeeecc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNG--RKVVCGSQSGTVLLYSWGYFK-D-CSDRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~-~-~~~~~~~~ 79 (203)
-|.+||+++.||.|.||.-.+++- ......|...|++++|.|.+ -.|++++.||.|.+.+++..+ - .......
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a- 147 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA- 147 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc-
Confidence 588999999999999999887732 34556789999999999864 678899999999999997642 2 2233455
Q ss_pred CCCceeEE-EeeC---C-----------CEEEEEcCCCcEEEEEccCCc--eeeeeccCCCCceEEEEEeCCC----CeE
Q 028806 80 SPNSVDAL-LKLD---E-----------DRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDR----KFL 138 (203)
Q Consensus 80 ~~~~v~~~-~~~~---~-----------~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~----~~l 138 (203)
|.-.+.++ |.|. | +.|++|+.|..|+||...+++ ....+.+|.+ .|+.++|.|.- .+|
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceee
Confidence 88888888 7664 4 569999999999999988763 3355889977 79999999953 579
Q ss_pred EEEeCCCcEEEEeCC
Q 028806 139 GSISHDSMLKLWDLD 153 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~ 153 (203)
++++.||++.||-.+
T Consensus 227 AS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKD 241 (299)
T ss_pred EEecCCCcEEEEEec
Confidence 999999999999876
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=119.11 Aligned_cols=160 Identities=14% Similarity=0.171 Sum_probs=127.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~ 79 (203)
|+|+ ++..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+..++.|+.||.++.++.....-... .+..
T Consensus 75 L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r- 152 (691)
T KOG2048|consen 75 LAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR- 152 (691)
T ss_pred EEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc-
Confidence 4687 466788888899999999999999999988889999999999999999999999888887754222222 2333
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec-----cCC--CCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-----EHS--EYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
..+.+.++ |+|++..|+.|+.||.|++||...+..+.... ... ..-|+++.|-.+ ..|++|..-|+|.+||
T Consensus 153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWD 231 (691)
T ss_pred ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEc
Confidence 56889999 99999999999999999999999887766322 111 124677777755 5788999999999999
Q ss_pred CCCcccCCCCCC
Q 028806 152 LDDILKGSGNNI 163 (203)
Q Consensus 152 ~~~~~~~~~~~~ 163 (203)
...+...+....
T Consensus 232 ~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 232 SIFGTLIQSHSC 243 (691)
T ss_pred ccCcchhhhhhh
Confidence 988887766543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-16 Score=120.49 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=116.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEe--ecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD------ 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~------ 71 (203)
+.|-|....|++++.|.++++||+.++.+... +.+|...|.+++|+|.. ..|++|+.||.|.|||++-.+.
T Consensus 106 l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~ 185 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF 185 (720)
T ss_pred eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH
Confidence 46778556889999999999999999887765 78999999999999955 6788999999999999974320
Q ss_pred -------------cceee-------eccCCCc----eeEEEeeCCCEEEEEcC-CCcEEEEEccCCce------eee--e
Q 028806 72 -------------CSDRF-------VGLSPNS----VDALLKLDEDRVITGSE-NGLISLVGILPNRI------IQP--I 118 (203)
Q Consensus 72 -------------~~~~~-------~~~~~~~----v~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~------~~~--~ 118 (203)
+...+ .. +... |+.++..|...|++++. |+.|+|||++.... ... +
T Consensus 186 ~~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~ 264 (720)
T KOG0321|consen 186 DNRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKY 264 (720)
T ss_pred hhhhhccccCCCCCCchhhcccccccc-ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCc
Confidence 00000 11 2222 44457889999998887 99999999986432 221 2
Q ss_pred ccCC--CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 119 AEHS--EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 119 ~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..|. ...+.++.....|.+|++.+.|+.|++|++++....
T Consensus 265 ~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 265 PTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred cCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence 2221 125778888888899998889999999999887544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=112.45 Aligned_cols=143 Identities=16% Similarity=0.204 Sum_probs=113.6
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc--c-----ccceeee
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--K-----DCSDRFV 77 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~-----~~~~~~~ 77 (203)
-.+++|++++.|..|.+|++. |+.+..+.......+..+.+|+|+++++++..--+++|.+-.. + .-+..+.
T Consensus 197 ~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 356799999999999999998 8888888877777888899999999999999899999987421 1 1234568
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-------------C---------cee-------------------
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-------------N---------RII------------------- 115 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-------------~---------~~~------------------- 115 (203)
+ |...|..+ |+++...+++.+.||.+++||..- + .++
T Consensus 276 G-H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l 354 (420)
T KOG2096|consen 276 G-HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDL 354 (420)
T ss_pred c-chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCce
Confidence 8 99999999 999999999999999999999731 1 000
Q ss_pred eeec------------cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 116 QPIA------------EHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 116 ~~~~------------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+.+. .|. ..|.+++|+++|+++++++ |+.++++-
T Consensus 355 ~~~~se~g~~~~~~e~~h~-~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 355 KVFASEDGKDYPELEDIHS-TTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EEEEcccCccchhHHHhhc-CceeeEEecCCCcEEeeec-ceeeeeec
Confidence 0000 132 3699999999999999987 77888764
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=110.70 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=113.9
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEee---cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc------
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK------ 70 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------ 70 (203)
|.|.|+. ++|++++.|.+|++|++++..++..+ .+|...|.++.|++++.++++++.|.++++|++....
T Consensus 141 ik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE 220 (385)
T KOG1034|consen 141 IKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE 220 (385)
T ss_pred hhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh
Confidence 3567754 68899999999999999999988776 5799999999999999999999999999999996210
Q ss_pred ------------------ccceee--------------------------------------------ec----------
Q 028806 71 ------------------DCSDRF--------------------------------------------VG---------- 78 (203)
Q Consensus 71 ------------------~~~~~~--------------------------------------------~~---------- 78 (203)
...-.+ ..
T Consensus 221 ~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~ 300 (385)
T KOG1034|consen 221 LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGE 300 (385)
T ss_pred hhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeE
Confidence 000000 00
Q ss_pred --cCCCceeEE---EeeCCCEEEEEcCCCcEEEEEccCCcee--eeeccC-CCCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 79 --LSPNSVDAL---LKLDEDRVITGSENGLISLVGILPNRII--QPIAEH-SEYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 79 --~~~~~v~~~---~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
.....++-+ |.|-++.|+.|...|.|.+||++...+. .++..+ ....|...+|+.++..|+..+.|+.|--|
T Consensus 301 ~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 301 FDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred eccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 011123333 2455667888999999999999876552 122111 12378999999999999999999999999
Q ss_pred eCC
Q 028806 151 DLD 153 (203)
Q Consensus 151 d~~ 153 (203)
|..
T Consensus 381 drv 383 (385)
T KOG1034|consen 381 DRV 383 (385)
T ss_pred Eee
Confidence 864
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=110.58 Aligned_cols=142 Identities=15% Similarity=0.234 Sum_probs=114.1
Q ss_pred EEEEEcCCCeEEEEEcCCCeE----------EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--cce-e
Q 028806 9 KLLGTSGDGTLSVCNLRKNTV----------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSD-R 75 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~-~ 75 (203)
++++|..+|.+.+||+.++.. ......|..+|.++.+.+.-..=++++.+-.+.+|.+..... .+. .
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 457788899999999998733 233346888999999987555557777778889998864311 111 1
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
... ....+..+ .-||++.+++++.|+.|+||+-++..++..+..|.. .|.+++|+|+...+|.++.|..|.+|++
T Consensus 247 ~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 222 34456777 899999999999999999999999999999999975 8999999999999999999999999986
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=116.53 Aligned_cols=153 Identities=16% Similarity=0.282 Sum_probs=126.5
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCC---------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc--
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKN---------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-- 69 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-- 69 (203)
.|.++.. .+++|+.|..|++|-+..+ ..+..+..|...|+.+.|+|+|.+|++|+.+|.+.+|.....
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence 3555555 8999999999999988642 234567789999999999999999999999999999977510
Q ss_pred ----------c---ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC
Q 028806 70 ----------K---DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 70 ----------~---~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
. .....+.+ |...++.+ |+|++.++++++.|..+++||+..|..+..+..|.. -+..++|.|-.
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~ 177 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLN 177 (434)
T ss_pred ccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc-ccceeecchhh
Confidence 0 11234456 77888889 999999999999999999999999999999999955 68999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCcc
Q 028806 136 KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+++++-+.|...+++.+...+
T Consensus 178 qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 178 QYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred hhhhhhccCcccceeeeeeee
Confidence 999999999877777665433
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-15 Score=109.46 Aligned_cols=145 Identities=18% Similarity=0.283 Sum_probs=111.2
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeeccCCCcee
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 85 (203)
+..+++++.|+.|++||+.+++.+..+..+. .+.+++|+|++..+ ++++.++.|++||+.. +.....+.. +.. +.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~-~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS-GPD-PE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC-CCC-cc
Confidence 3578899999999999999988888777554 46789999999876 5667789999999874 344444544 333 34
Q ss_pred EE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC-cEEEEeCCCccc
Q 028806 86 AL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS-MLKLWDLDDILK 157 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~iwd~~~~~~ 157 (203)
.+ ++|+++.+++++ .++.|++||+.+++.+..+..+ . .+.+++|+|++.+++++..++ .+.+||..++..
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~-~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-V-EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-C-CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence 55 899999876654 5889999999988877777544 2 468899999999999888664 567789876543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-16 Score=120.36 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=120.9
Q ss_pred CcccccCCEEEEEcCC-----CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc---
Q 028806 1 MTFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--- 72 (203)
++.||+++++|++... ..|++|+..+....+.+.+|.-.|+.|+|+||+++|++.+.|.++.+|.....-..
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence 4678999999998653 46999999988778889999999999999999999999999999999988532111
Q ss_pred ceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--ceeee--eccCCCCceEEEEEeC----CCC-eEEEEe
Q 028806 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQP--IAEHSEYPIESLALSH----DRK-FLGSIS 142 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~--~~~~~~~~i~~i~~~~----~~~-~l~~~~ 142 (203)
....+. |..-|+.+ |+|++.++++++.|..|++|..... +.+.. ...+.. +|++++|.| +.. .+++|-
T Consensus 611 fa~~k~-HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~-aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 611 FACLKA-HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSL-AVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred hccccc-cceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCC-ceeeEEeeccccccccceEEEEe
Confidence 122456 88889999 9999999999999999999998766 33333 223323 899999987 222 566777
Q ss_pred CCCcEEEEeCC
Q 028806 143 HDSMLKLWDLD 153 (203)
Q Consensus 143 ~d~~i~iwd~~ 153 (203)
..|.|.+|...
T Consensus 689 e~GeI~l~~~~ 699 (764)
T KOG1063|consen 689 EKGEIVLWRRK 699 (764)
T ss_pred cccEEEEEecc
Confidence 89999999865
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=111.07 Aligned_cols=146 Identities=13% Similarity=0.150 Sum_probs=124.8
Q ss_pred EEEEEcCC--CeEEEEEcCCCeEEEeecCC---------ccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCcccccee
Q 028806 9 KLLGTSGD--GTLSVCNLRKNTVQTRSEFS---------EEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 9 ~l~~~~~d--~~i~vw~~~~~~~~~~~~~~---------~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
.+++|+.. ..+.+||+...+.+..-+.. .-.++++.|.+. ...|++++.-+.+++||.+...+++..
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 45668887 78999999987665544321 234678888887 789999999999999999988888888
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
|.- ...++.++ ..|.++.|++|...+.+..+|++.++.+.. +.+-++ .|+++..+|..++|++++.|+.++|+|+.
T Consensus 243 fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 243 FDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred ecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecc
Confidence 887 78899999 899999999999999999999999988877 666655 89999999999999999999999999998
Q ss_pred Ccc
Q 028806 154 DIL 156 (203)
Q Consensus 154 ~~~ 156 (203)
+..
T Consensus 321 trk 323 (412)
T KOG3881|consen 321 TRK 323 (412)
T ss_pred cch
Confidence 843
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-16 Score=118.08 Aligned_cols=156 Identities=15% Similarity=0.230 Sum_probs=131.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC--------------------------------------CccceEEE
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--------------------------------------SEEELTSV 43 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--------------------------------------~~~~v~~~ 43 (203)
.++.+|++|+.|+.-|.|-.+|..++.+...+.. ....|..+
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rL 215 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARL 215 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhh
Confidence 4677899999999999999999888766544311 12345667
Q ss_pred EEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC
Q 028806 44 VLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (203)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 122 (203)
.|.|..-+|++++..|.++.-|+.+ +..+..+.. ..+.+..+ -+|-+..+-+|...|+|.+|...+.+++..+.+|.
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~-GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVST-GKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeech-hhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence 7888888889999999999999975 677777776 67777777 79999999999999999999999999999999996
Q ss_pred CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 123 ~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+ +|.+|++.++|+|++|.+.|+.++|||+++..+-+.
T Consensus 294 g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 294 G-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred C-CcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence 6 999999999999999999999999999999875543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=115.78 Aligned_cols=109 Identities=26% Similarity=0.316 Sum_probs=93.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK--------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-- 70 (203)
++|.|-...|++++.||+|.+|+++. -+++.++.+|.++|.|++..+++..+++|+.||+|+.|.+....
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 46778888999999999999999932 15678899999999999999999999999999999999765221
Q ss_pred -------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc
Q 028806 71 -------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 71 -------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~ 110 (203)
.....+.+ |...++.+ +++....|++++.||++++|...
T Consensus 380 ~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeeccC
Confidence 23446788 99999999 78888889999999999999864
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=106.98 Aligned_cols=150 Identities=14% Similarity=0.229 Sum_probs=116.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeec--c
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVG--L 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~ 79 (203)
+-++|.+++-|.+..|||++++. ....+-.|...|..++|...+ ..|++.+.||.+++||++.. ..-..+.. .
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l-eHSTIIYE~p~ 240 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL-EHSTIIYEDPS 240 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc-ccceEEecCCC
Confidence 45789999999999999999862 355667899999999999865 57889999999999999853 33333322 0
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCC-CcEEEEEccC-CceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 028806 80 SPNSVDAL-LKL-DEDRVITGSEN-GLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~d-~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~ 154 (203)
...+...+ |++ +.+++++-..| ..|.+.|++. ..++..++.|.. .|..++|.|.. .+|++++.|....+||+.+
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEeccc
Confidence 12345556 655 56677765544 5699999984 678899999955 89999999954 6899999999999999987
Q ss_pred ccc
Q 028806 155 ILK 157 (203)
Q Consensus 155 ~~~ 157 (203)
...
T Consensus 320 ~~~ 322 (364)
T KOG0290|consen 320 MPR 322 (364)
T ss_pred ccc
Confidence 665
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=109.37 Aligned_cols=142 Identities=12% Similarity=0.152 Sum_probs=118.9
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeec
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|||- .+.++.++....+-||.-....++..+-+|.+.|+.+.|.++|+.|++|.. +-.|.+||++..+.++-.+..
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 468885 458899999889999988888888899999999999999999999999986 678999999988888777776
Q ss_pred cCCC-ceeEE-E--eeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 79 LSPN-SVDAL-L--KLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 79 ~~~~-~v~~~-~--~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
|.. .-..+ | .|++++|++|+.+|.|++||+.. +.....+..+.. .+..++++|-=.++++++..
T Consensus 293 -hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 293 -HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred -hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 665 22333 5 78999999999999999999987 776777777755 78999999997778877643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=113.20 Aligned_cols=146 Identities=20% Similarity=0.242 Sum_probs=118.5
Q ss_pred CEEEEEcC-CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 8 MKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
++++++.. -..|.+|.+..........--.++|.+++-+|.|.+|+.|+-.+.|++|.+.+ +..+..+.. |-..|+|
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a-HYQ~ITc 128 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA-HYQSITC 128 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh-hccceeE
Confidence 35555532 34688888865433332222457899999999999999998999999999974 788888888 9999999
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEcc---------CCceeeeeccCCCCceEEEEEeCCC--CeEEEEeCCCcEEEEeCCC
Q 028806 87 L-LKLDEDRVITGSENGLISLVGIL---------PNRIIQPIAEHSEYPIESLALSHDR--KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~i~~~d~~---------~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~iwd~~~ 154 (203)
+ |+-+|.+|++|+.||.|.+|.+. +-+++..+..|+- +|+.+...+.| .+|++++.|.++++||+..
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-SITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc-eeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 9 99999999999999999999873 2356788888966 89999887754 6899999999999999988
Q ss_pred cc
Q 028806 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
+.
T Consensus 208 g~ 209 (476)
T KOG0646|consen 208 GV 209 (476)
T ss_pred ce
Confidence 74
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=110.78 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=118.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++.+|+.+++++++.|+.+++|+ ..++..+.. -..++.++.|+|.| .++.|...|...+.|..+ ..+-.+.. .
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~~~~-d 446 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTET--QDLVTIHT-D 446 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEeccc--ceeEEEEe-c
Confidence 35688899999999999999999 445554433 25678999999999 999999999999999875 33444554 5
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
..++.++ |+|+|.+|+.|+.|+.|++|-+.. +........+...+|+.+.|++|+++|.+-+.|-.|..|..
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 7788999 999999999999999999999864 44444444444468999999999999999999999999943
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-14 Score=102.51 Aligned_cols=153 Identities=15% Similarity=0.214 Sum_probs=111.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC----CeEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCc-----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF----- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~----- 69 (203)
+.|.+-|+.+|+|+.|.+|+|||... ..+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.-...
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence 46888999999999999999999653 245667788999999999976 5789999999999999975211
Q ss_pred cc---cceeeeccCCCceeEE-Eee--CCCEEEEEcCCCcEEEEEccC--------------------------------
Q 028806 70 KD---CSDRFVGLSPNSVDAL-LKL--DEDRVITGSENGLISLVGILP-------------------------------- 111 (203)
Q Consensus 70 ~~---~~~~~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~i~~~d~~~-------------------------------- 111 (203)
+. ...++.. ....|+.+ |.| -|-.+++++.||.|+||+...
T Consensus 99 ~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 99 GRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred cceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 11 1223444 55677778 766 466777888888888876421
Q ss_pred -------------------------------C----ceeeeeccCCCCceEEEEEeCCC----CeEEEEeCCCcEEEEeC
Q 028806 112 -------------------------------N----RIIQPIAEHSEYPIESLALSHDR----KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 112 -------------------------------~----~~~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~i~iwd~ 152 (203)
+ ..+.++..|+. +|+.++|.|+- ..||+++.|| |+||.+
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 0 01122234544 89999999952 4688999999 999999
Q ss_pred CCcc
Q 028806 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
....
T Consensus 256 ~~~~ 259 (361)
T KOG2445|consen 256 KVAR 259 (361)
T ss_pred eecc
Confidence 7544
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-15 Score=106.59 Aligned_cols=150 Identities=11% Similarity=0.113 Sum_probs=121.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--cccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~ 75 (203)
.+|++|+..+|.+.....|.||..... +...++..|...|+.+.|+|..+.|++++.|...++|.....+ .+.-.
T Consensus 16 hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptlv 95 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV 95 (361)
T ss_pred eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecccee
Confidence 379999999999999999999998754 5677888999999999999999999999999999999984322 12223
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee---eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+.. +....+++ |+|.++.|++|+..+.|.||-++..+-- +.+...-...|.++.|+|++-+|++|+.|+..+||.
T Consensus 96 LlR-iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 96 LLR-INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred EEE-eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence 334 67788999 9999999999999999999988653321 111111123689999999999999999999999996
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-15 Score=110.81 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=114.5
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe---EEEe------------------ecCCccceEEEEEeeC-CCEEEEecCCCeEEE
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNT---VQTR------------------SEFSEEELTSVVLMKN-GRKVVCGSQSGTVLL 63 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~---~~~~------------------~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~ 63 (203)
.|+++|.|+.+..|.|||+.--. +... -.+|...|..++|+.. .+.|++|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 46899999999999999986210 0011 1257777888888864 468899999999999
Q ss_pred EEcCCccccceeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCC-eEE
Q 028806 64 YSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRK-FLG 139 (203)
Q Consensus 64 wd~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~-~l~ 139 (203)
||+.+ +.+...+.. |...|.++ |+| .+.+|++|+.|++|.+.|.+. +..-..++.. + .|-.++|+|... .++
T Consensus 271 WD~~~-g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-g-~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 271 WDVDT-GKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-G-EVEKVAWDPHSENSFF 346 (463)
T ss_pred EEcCC-CCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-c-ceEEEEecCCCceeEE
Confidence 99985 688888888 99999999 877 577899999999999999984 2222334333 2 689999999764 566
Q ss_pred EEeCCCcEEEEeCCCcc
Q 028806 140 SISHDSMLKLWDLDDIL 156 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~ 156 (203)
++..||.++-+|+|+..
T Consensus 347 ~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPG 363 (463)
T ss_pred EecCCceEEeeecCCCC
Confidence 66789999999999875
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-15 Score=117.23 Aligned_cols=154 Identities=14% Similarity=0.223 Sum_probs=115.8
Q ss_pred EEEEEcCCCeEEEEEcCCC---eEEE-ee---------------------------------cCCccceEEEEEeeCCCE
Q 028806 9 KLLGTSGDGTLSVCNLRKN---TVQT-RS---------------------------------EFSEEELTSVVLMKNGRK 51 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~---~~~~-~~---------------------------------~~~~~~v~~~~~~~~~~~ 51 (203)
.+++++.|++|++|++..+ ...+ .+ -.....+++++.+|++++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 4788999999999998752 1110 00 012346899999999999
Q ss_pred EEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-Ee-e--CCCEEEEEcCCCcEEEEEccC-CceeeeeccC-----
Q 028806 52 VVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LK-L--DEDRVITGSENGLISLVGILP-NRIIQPIAEH----- 121 (203)
Q Consensus 52 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~-~--~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~----- 121 (203)
|++|..-|++++|++.. -.....+.. |...|.|+ |+ | ..++|++++.|+.|+|||+.. ..+++++.+|
T Consensus 474 LAsGDr~GnlrVy~Lq~-l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQE-LEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ecccCccCceEEEEehh-hhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 99999999999999975 345556677 99999999 74 4 457899999999999999742 1111222111
Q ss_pred ---------------------------------------C----CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 122 ---------------------------------------S----EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 122 ---------------------------------------~----~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+ ...++.|+..|...++++++.|+.|+||++.++.+.
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 0 014778888899999999999999999999999988
Q ss_pred CCCCCC
Q 028806 159 SGNNIS 164 (203)
Q Consensus 159 ~~~~~~ 164 (203)
..++..
T Consensus 632 k~FKgs 637 (1080)
T KOG1408|consen 632 KSFKGS 637 (1080)
T ss_pred eeeccc
Confidence 777654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=106.76 Aligned_cols=155 Identities=26% Similarity=0.396 Sum_probs=125.6
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccce-eee
Q 028806 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSD-RFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~-~~~ 77 (203)
++|+|+++.+++++. ++.+++|+...+..+..+..|...+.+++|+|++. .+++++.|+.+++||.. .+..+. .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~~~~ 239 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLS 239 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEeeecC
Confidence 468999998888885 99999999998888888888999999999999988 55555899999999887 345555 466
Q ss_pred ccCCCceeE-EEeeCCCEEEEEcCCCcEEEEEccCCce-eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 78 GLSPNSVDA-LLKLDEDRVITGSENGLISLVGILPNRI-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 78 ~~~~~~v~~-~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
. |.... . .|+|++..+++++.++.+++|++..... +..+..|.. .+.++.|+|++..+++++.|+.+.+|++.+.
T Consensus 240 ~-~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 240 G-HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred C-CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 6 66554 3 4899998899999999999999986654 444455634 8999999998888888888888999988776
Q ss_pred ccCC
Q 028806 156 LKGS 159 (203)
Q Consensus 156 ~~~~ 159 (203)
....
T Consensus 317 ~~~~ 320 (466)
T COG2319 317 KLLS 320 (466)
T ss_pred ceEE
Confidence 6443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=125.04 Aligned_cols=155 Identities=16% Similarity=0.221 Sum_probs=116.8
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEee--cCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRS--EFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|.|++.+. .||+|+.+|.|.|||+...+.-... ....+.|.+++|+.. .+.|++++.+|.+.|||++.. +.+-.+
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~l 200 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKL 200 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-Cccccc
Confidence 46888654 9999999999999999864332222 124567999999874 467888889999999999864 444444
Q ss_pred eccCCC--ceeEE-EeeCCC-EEEEEcCC---CcEEEEEccC-CceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcE
Q 028806 77 VGLSPN--SVDAL-LKLDED-RVITGSEN---GLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSML 147 (203)
Q Consensus 77 ~~~~~~--~v~~~-~~~~~~-~l~~~~~d---~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i 147 (203)
.. +.. .+..+ |+|+.. .|++++.| -.|.+||+|. ..+++++++|.. .|.++.|++.+ ++|++++.|+.|
T Consensus 201 s~-~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 201 SD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred cc-CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCe
Confidence 43 333 35566 999764 45555554 3599999985 457788888965 79999999966 889999999999
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
.+|+..+++.-
T Consensus 279 i~wN~~tgEvl 289 (1049)
T KOG0307|consen 279 ICWNPNTGEVL 289 (1049)
T ss_pred eEecCCCceEe
Confidence 99999996544
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=103.75 Aligned_cols=151 Identities=16% Similarity=0.297 Sum_probs=114.2
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEE--eecCCc-cceEEEEEeeCCCEEEEecC----CCeEEEEEcCCccccceeeecc
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSE-EELTSVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
...+.+|+.||+|++||++...... ..+.+. .+..+++.+..++.+++|.. +-.+.+||++...+.+..+...
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS 163 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES 163 (376)
T ss_pred CCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh
Confidence 4568899999999999999754332 333443 46778887777788888764 5689999999776655555433
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeC
Q 028806 80 SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~ 152 (203)
|...|+++ |+| +.++|++|+.||.|.|||+.... .+.++.. ...|.++.|..++ ..|.+.+..+...+|++
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--GSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcc--cceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 99999999 998 56889999999999999986432 2333433 2369999999887 45888889999999999
Q ss_pred CCcccCC
Q 028806 153 DDILKGS 159 (203)
Q Consensus 153 ~~~~~~~ 159 (203)
..+.+..
T Consensus 242 e~~~~~~ 248 (376)
T KOG1188|consen 242 EDGSEET 248 (376)
T ss_pred cCCChhh
Confidence 8777443
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.7e-15 Score=111.99 Aligned_cols=94 Identities=14% Similarity=0.246 Sum_probs=83.4
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 115 (203)
.+.|...+|+|||++|++.+.||.++|||+.+ ...+..++. .-+...|+ |+|||++|++|+.|-.|.||.+..++.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 35688999999999999999999999999974 466666777 77788888 9999999999999999999999999999
Q ss_pred eeeccCCCCceEEEEEeC
Q 028806 116 QPIAEHSEYPIESLALSH 133 (203)
Q Consensus 116 ~~~~~~~~~~i~~i~~~~ 133 (203)
..-.+|.. +|..++|.|
T Consensus 368 ARGqGHkS-WVs~VaFDp 384 (636)
T KOG2394|consen 368 ARGQGHKS-WVSVVAFDP 384 (636)
T ss_pred Eecccccc-ceeeEeecc
Confidence 99999955 899999983
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-14 Score=101.28 Aligned_cols=144 Identities=16% Similarity=0.243 Sum_probs=115.2
Q ss_pred EEEEEcCCCeEEEEEcCCC---eEEEeec--CCccceEEEEEeeCC----CEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 9 KLLGTSGDGTLSVCNLRKN---TVQTRSE--FSEEELTSVVLMKNG----RKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~---~~~~~~~--~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
.+++.+ .+.+.+|..... ..++... .+......++|+-+. .+++.++.-|.|++.|+. .+.+...+.+
T Consensus 57 vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~-~~~~~~~~~g- 133 (385)
T KOG1034|consen 57 VFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV-SGQCSKNYRG- 133 (385)
T ss_pred eEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc-hhhhccceec-
Confidence 344444 467888887642 3333332 356677888887643 478888899999999997 4677888899
Q ss_pred CCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeee---ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 80 SPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
|...|..+ ++|. .+++++++.|..|++|++++..++..+ .+|.+ .|.++.|+++|.+|++++.|.+|++|++..
T Consensus 134 hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC-cEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 99999999 8885 578999999999999999999998876 45655 799999999999999999999999999974
Q ss_pred cc
Q 028806 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
.+
T Consensus 213 ~~ 214 (385)
T KOG1034|consen 213 KE 214 (385)
T ss_pred hH
Confidence 43
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-14 Score=103.56 Aligned_cols=111 Identities=15% Similarity=0.236 Sum_probs=93.6
Q ss_pred eEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee
Q 028806 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 118 (203)
..++.|++.|.+|++|+.+|.|.+||+.+. ..-+.+.+ |..+|.++ |+++|+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsa-H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSA-HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhc-cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 788999999999999999999999999863 56667788 99999999 9999999999999999999999999999988
Q ss_pred ccCCCCceEEEEEeCCCCe-EEEEeCCCcEEEEeCCC
Q 028806 119 AEHSEYPIESLALSHDRKF-LGSISHDSMLKLWDLDD 154 (203)
Q Consensus 119 ~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~iwd~~~ 154 (203)
+-. . +|+.+.|+|..+. .++.-.+..-.+-++..
T Consensus 104 rf~-s-pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 104 RFD-S-PVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred Ecc-C-ccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 876 3 8999999996543 33333455566666654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-15 Score=116.06 Aligned_cols=148 Identities=13% Similarity=0.198 Sum_probs=126.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
+.|+|...+|++++. ..|+|||+....++..+......|..++++|.|..|+.++.|+.+..||+..+..+.+++.. |
T Consensus 572 v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H 649 (733)
T KOG0650|consen 572 VKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-H 649 (733)
T ss_pred EEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-h
Confidence 368898888888877 78999999887777777766788999999999999999999999999999877788888888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEcc------CC---ceeeeeccCCC---CceEEEEEeCCCCeEEEEeCCCcE
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGIL------PN---RIIQPIAEHSE---YPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~------~~---~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
...++++ |++.-.++++|+.||.+.|+.-. .. -++..+++|.. ..|..+.|+|...+|++++.||+|
T Consensus 650 ~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 650 EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceE
Confidence 9999999 99999999999999999887532 11 24577788753 147788899999999999999999
Q ss_pred EEE
Q 028806 148 KLW 150 (203)
Q Consensus 148 ~iw 150 (203)
++|
T Consensus 730 rlf 732 (733)
T KOG0650|consen 730 RLF 732 (733)
T ss_pred Eee
Confidence 998
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-13 Score=97.76 Aligned_cols=148 Identities=17% Similarity=0.219 Sum_probs=111.0
Q ss_pred CEEEEEcCCCeEEEEEcCC-CeEEEeecCC--ccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccc-cceeeeccCCC
Q 028806 8 MKLLGTSGDGTLSVCNLRK-NTVQTRSEFS--EEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKD-CSDRFVGLSPN 82 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~-~~~~~~~~~~~ 82 (203)
..|++. ..+.|+||...+ .+.+..++.. ...+.++.-+....+|+. |-.-|.|.+-|+..... .-..+.. |..
T Consensus 105 ~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~s 182 (346)
T KOG2111|consen 105 DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA-HDS 182 (346)
T ss_pred CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc-ccC
Confidence 344444 347899999884 4555544422 233544443334455555 34579999999974322 2356777 999
Q ss_pred ceeEE-EeeCCCEEEEEcCCCc-EEEEEccCCceeeeeccCCC-CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 83 SVDAL-LKLDEDRVITGSENGL-ISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.|.|+ .+-+|..+++++..|+ |+|||..+|..+..++...+ ..|++|+|+|+..+|++++..|++.||.++....
T Consensus 183 ~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 99999 8999999999999997 89999999999999876543 3799999999999999999999999999976543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=111.76 Aligned_cols=149 Identities=19% Similarity=0.165 Sum_probs=112.7
Q ss_pred CEEEEEcCCCeEEEEEcCCCeE------EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee--eecc
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTV------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR--FVGL 79 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~ 79 (203)
..|+.+..+|.|.++|...-.. +.....|...|..+.|.|....|++++.|.++++||+... .+... +.+
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-~l~G~~~~~G- 142 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-RLVGGRLNLG- 142 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-eeecceeecc-
Confidence 4678899999999999865322 2444578999999999997788999999999999999753 44443 778
Q ss_pred CCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCc--------------------ee-------eeeccCCCCceEE--
Q 028806 80 SPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR--------------------II-------QPIAEHSEYPIES-- 128 (203)
Q Consensus 80 ~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~--------------------~~-------~~~~~~~~~~i~~-- 128 (203)
|...+.++ |.| +...+++|+.||.|.|||++... +. ....++.. .|.+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~-ti~ssv 221 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN-TIFSSV 221 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccC-ceeeee
Confidence 99999998 877 45678899999999999986322 00 01112211 3555
Q ss_pred -EEEeCCCCeEEEEeC-CCcEEEEeCCCcccCC
Q 028806 129 -LALSHDRKFLGSISH-DSMLKLWDLDDILKGS 159 (203)
Q Consensus 129 -i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~ 159 (203)
+.+..|...||+++. |+.|+|||++......
T Consensus 222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred EEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 666778889998886 9999999999876543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-14 Score=110.01 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=100.6
Q ss_pred CcccccCCEEEEEcCC---CeEEEEEcCCCeE--EEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTSGD---GTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~ 74 (203)
++|||+|+.|++++.+ ..|++|++.+++. +..+.+ ....++|+|+|+.|+++. .++.+.+|.+........
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 4799999999887643 4799999988754 223333 344689999999888764 577666664432233445
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.. +...+... |+|+|+.|+.++ .++...||++... .....+ .+ . . ....|+|+|++|++.+.+ .+.+||
T Consensus 286 ~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~-~-~~~~~SpDG~~ia~~~~~-~i~~~D 359 (429)
T PRK01742 286 QLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-R-G-YSAQISADGKTLVMINGD-NVVKQD 359 (429)
T ss_pred eecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-C-C-CCccCCCCCCEEEEEcCC-CEEEEE
Confidence 5665 55566667 999999877655 5678888876532 222223 33 2 2 457899999999888765 466699
Q ss_pred CCCccc
Q 028806 152 LDDILK 157 (203)
Q Consensus 152 ~~~~~~ 157 (203)
+.++..
T Consensus 360 l~~g~~ 365 (429)
T PRK01742 360 LTSGST 365 (429)
T ss_pred CCCCCe
Confidence 987653
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-13 Score=103.58 Aligned_cols=150 Identities=14% Similarity=0.258 Sum_probs=99.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc---------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--------- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--------- 71 (203)
|+|.++|. +++|..+|.|.||+..+.+..+....|.+.|.++....+|.+|- |+.|..|..||-.....
T Consensus 252 v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 252 VTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred EEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhc
Confidence 45777764 67788889999999887777666668888888888888876555 88888888887421100
Q ss_pred -ccee-----------------------------eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEE------------
Q 028806 72 -CSDR-----------------------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG------------ 108 (203)
Q Consensus 72 -~~~~-----------------------------~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d------------ 108 (203)
.+++ ..+ |....+.+ .+|+.+.+++++.|+.+++|+
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~g-h~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d 408 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQG-HGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIED 408 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEe-cccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecC
Confidence 0000 012 33334444 355555666666666666655
Q ss_pred --------------------------ccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 109 --------------------------ILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 109 --------------------------~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.++...+..-.. ..++.++.|+|+|.+||.|+.|+.|+||-+...
T Consensus 409 ~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 409 PAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred ceeEeeccCcceEEEeeccceEEEEecccceeEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 333222222222 238999999999999999999999999987544
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-13 Score=97.93 Aligned_cols=144 Identities=14% Similarity=0.207 Sum_probs=108.7
Q ss_pred CCEEEEEcCCCeEEEEEcCC---------CeEEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCccc----
Q 028806 7 AMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKD---- 71 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~---- 71 (203)
|+.+|+++.|+++.||.-.. .....++....+.|+.+.|.|. |-.|++++.||.++||+......
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 78999999999999997521 1234466667788999999984 56889999999999997742100
Q ss_pred --------------------------------------------------------------cceeeeccCCCceeEE-E
Q 028806 72 --------------------------------------------------------------CSDRFVGLSPNSVDAL-L 88 (203)
Q Consensus 72 --------------------------------------------------------------~~~~~~~~~~~~v~~~-~ 88 (203)
.+..+.. +..+|+.+ |
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d-~~dpI~di~w 231 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD-HTDPIRDISW 231 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC-CCCcceeeee
Confidence 0001123 56788888 8
Q ss_pred eeC----CCEEEEEcCCCcEEEEEccCC--------------------ceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 89 KLD----EDRVITGSENGLISLVGILPN--------------------RIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 89 ~~~----~~~l~~~~~d~~i~~~d~~~~--------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
.|. -..|++++.|| |+||.+... +.+..+..|.. .|+.+.|+-.|..|++.+.|
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCC
Confidence 774 35788999999 999998731 13344667744 89999999999999999999
Q ss_pred CcEEEEeCC
Q 028806 145 SMLKLWDLD 153 (203)
Q Consensus 145 ~~i~iwd~~ 153 (203)
|.+++|...
T Consensus 310 G~VRLWkan 318 (361)
T KOG2445|consen 310 GCVRLWKAN 318 (361)
T ss_pred ceeeehhhh
Confidence 999999754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=108.94 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=92.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.|+|+|.-|++++.||.|++|. ++|-+..++.....+|+|++|.|+.+.++.+.. +.+.+=.+.. ...+-.... |.
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~-n~k~i~WkA-HD 186 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAA-NSKIIRWRA-HD 186 (737)
T ss_pred ccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccc-ccceeEEec-cC
Confidence 5999999999999999999999 445454555566788999999998877766543 4566655543 233445677 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCC
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~ 134 (203)
+-|.++ |++..++|++|+.|...++||-. |..+..-..| +.+|++++|+|+
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~-ey~ITSva~npd 238 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE-EYAITSVAFNPE 238 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChh-ccceeeeeeccc
Confidence 999999 99999999999999999999953 4444333333 223444444443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-13 Score=105.23 Aligned_cols=153 Identities=17% Similarity=0.093 Sum_probs=102.2
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeee
Q 028806 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+|||+|+.|+..+.. ..|++||+.+++... +......+...+|+|||+.|+ +.+.++...+|.+.........+.
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 699999999877642 469999999886543 333344567889999998876 456777767776543333445555
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEc--cCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC---cEEEE
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGI--LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLKLW 150 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~iw 150 (203)
. +....... |+|+|+.|+..+. .+...+|.+ .++...... .... ......|+|+|++|+..+.++ .|.+|
T Consensus 281 ~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~-~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~ 357 (427)
T PRK02889 281 Q-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGS-YNTSPRISPDGKLLAYISRVGGAFKLYVQ 357 (427)
T ss_pred C-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCC-CcCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 4 44444555 9999999887654 455666654 444433222 2212 344678999999998776544 69999
Q ss_pred eCCCcccC
Q 028806 151 DLDDILKG 158 (203)
Q Consensus 151 d~~~~~~~ 158 (203)
|+.++...
T Consensus 358 d~~~g~~~ 365 (427)
T PRK02889 358 DLATGQVT 365 (427)
T ss_pred ECCCCCeE
Confidence 99876543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=119.65 Aligned_cols=154 Identities=9% Similarity=0.128 Sum_probs=125.9
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEeecCCc--cceEEEEEeeCC-CEEEEecCC---CeEEEEEcCCccccc
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKNG-RKVVCGSQS---GTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~d---~~i~~wd~~~~~~~~ 73 (203)
|+|+..- ..|++++.+|.+.|||++..+.+..+..+. ..+..++|+|+. ..+++++.| -.|.+||++.....+
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 3566544 357888899999999999887666555443 347789999976 456666654 479999999877888
Q ss_pred eeeeccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEE
Q 028806 74 DRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLW 150 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iw 150 (203)
+.+.+ |...|.++ |++.+ .++++++.|+.|.+|+.++++.+..+..... .+..+.|.|... .++.++.||.|-||
T Consensus 247 k~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 247 KILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeee
Confidence 89999 99999999 87755 8889999999999999999999999988644 899999999765 77888899999999
Q ss_pred eCCCcc
Q 028806 151 DLDDIL 156 (203)
Q Consensus 151 d~~~~~ 156 (203)
.+.+..
T Consensus 325 sl~~~~ 330 (1049)
T KOG0307|consen 325 SLQGTD 330 (1049)
T ss_pred eeecCC
Confidence 987765
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-14 Score=113.28 Aligned_cols=154 Identities=21% Similarity=0.178 Sum_probs=129.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
++++.-++++|+--+.|.+|.....+....+.+|.+.|.++.|+-+|+++++.+.|.++++|++.+.........+ |..
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-Hsa 219 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSA 219 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccc
Confidence 4556668888888999999998743333367899999999999999999999999999999999865444446677 899
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 83 SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.++.+ |.|. .+++++.|.+.++|+. .+..+..+..|....|+.++..++...+++++.|+.+++|++.+...+..
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~ 295 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGH 295 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccc
Confidence 99988 8887 9999999999999974 46667788888777899999999999999999999999999877665533
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=108.96 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=117.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee-cCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCc--------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-EFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF-------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~-------- 69 (203)
|+|+.+|.+|++|+.|-.+.|||....+++..+ ++|...|.++.|-| +.+.+++|..|..|++||+...
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~ 135 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG 135 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC
Confidence 579999999999999999999999877766555 58999999999998 4578899999999999999731
Q ss_pred -cccceeeeccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCc-------eeeeec-cCCC-CceEEEEEeCCC-C
Q 028806 70 -KDCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNR-------IIQPIA-EHSE-YPIESLALSHDR-K 136 (203)
Q Consensus 70 -~~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~~-------~~~~~~-~~~~-~~i~~i~~~~~~-~ 136 (203)
......+.. |...|..+ -.|++ +.+.+++.||+|+-||++... +...+. .+.. -...++.++|.. .
T Consensus 136 ~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~ 214 (758)
T KOG1310|consen 136 MEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY 214 (758)
T ss_pred ccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence 122333455 66677777 46666 788999999999999998521 111111 1101 146789999965 5
Q ss_pred eEEEEeCCCcEEEEeCCCcc
Q 028806 137 FLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~ 156 (203)
+|++|+.|--.++||.+...
T Consensus 215 ~laVGgsdpfarLYD~Rr~l 234 (758)
T KOG1310|consen 215 YLAVGGSDPFARLYDRRRVL 234 (758)
T ss_pred eEEecCCCchhhhhhhhhhc
Confidence 78899999999999965443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-13 Score=107.00 Aligned_cols=143 Identities=20% Similarity=0.302 Sum_probs=124.1
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
+.|+.|+..|.+.+|++++++.+.++.++...|+++.=+|--..++.|..+|+|.+++++. .+.+..|+. ..+.|+++
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-dkil~sFk~-d~g~Vtsl 250 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-DKILMSFKQ-DWGRVTSL 250 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc-CcEEEEEEc-cccceeEE
Confidence 5688999999999999999999999999999999999888888999999999999999985 577888885 46999999
Q ss_pred -EeeCCCEEE-EEcCCCcEEEEEccCCceeeeec-cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 88 -LKLDEDRVI-TGSENGLISLVGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 88 -~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
|..||+.++ +|+..|.+.+||++..+.+..++ .|.+ .|....|-|....|++++.|+.+++|=..
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG-SVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC-CcccceecCCCceEeeccCCCceeEEEee
Confidence 988887655 56667999999999887776665 6644 78999999999999999999998888555
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-13 Score=107.08 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=102.0
Q ss_pred CcccccCCEEEEEc-CCCeEEEE--EcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTS-GDGTLSVC--NLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~vw--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~ 76 (203)
++|+|||+.|+++. .+|.+.|| ++.++.. ..+..+...+..+.|+|+++.|+.++ .++...+|++...+.....+
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 36999999888764 57765554 6665554 45556666788899999999877554 57888888875433333333
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. +.. ..+ |+|+|++|++++.++ +.+||+.+++........ ....+.|+|+|++|++++.++.+.+|.+.
T Consensus 332 -~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 332 -G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3 333 345 899999999887765 566999888765332222 24567899999999999988888888753
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-13 Score=100.82 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=120.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC------CeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 73 (203)
|.||.++++|++|+.|..+++|.+.. .+++.... .|.+.|.|++|....++|++|..+++|...|+.+ .+.+
T Consensus 62 lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt-~qsi 140 (609)
T KOG4227|consen 62 LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET-KQSI 140 (609)
T ss_pred eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc-ceee
Confidence 46899999999999999999999853 45555444 4568999999999999999999999999999985 3444
Q ss_pred eeeec-cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-eee-eeccCCCCceEEEEEeCCC-CeEEEEeCCCcEE
Q 028806 74 DRFVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-IIQ-PIAEHSEYPIESLALSHDR-KFLGSISHDSMLK 148 (203)
Q Consensus 74 ~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~-~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~ 148 (203)
..+.. ...+.|+.+ .+|..+.+++.+.++.|.+||.+... .+. .+.+......+.+.|+|.. .+|++.+..+-+-
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 44432 023578888 89999999999999999999998654 221 1222223368899999965 5777888888999
Q ss_pred EEeCCCcc
Q 028806 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+||++...
T Consensus 221 ~~D~R~~~ 228 (609)
T KOG4227|consen 221 VFDRRMQA 228 (609)
T ss_pred ceeecccc
Confidence 99987653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-12 Score=100.22 Aligned_cols=150 Identities=26% Similarity=0.439 Sum_probs=123.2
Q ss_pred cccCC-EEEEEcC-CCeEEEEEcCC-CeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeecc
Q 028806 4 AADAM-KLLGTSG-DGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 4 sp~~~-~l~~~~~-d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++++. .++..+. ++.+.+|+... ......+..|...|..++|+|++..+++++. ++.+++|++.. ...+..+..
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 196 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAG- 196 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEeecc-
Confidence 56666 4444444 89999999998 7777888899999999999999998888885 99999999974 466777787
Q ss_pred CCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceee-eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 80 SPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...+.++ |+|++. .+++++.++.|++||...+..+. .+..|.. .. ...|+|++.++++++.|+.+++|+++...
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 88999999 899988 55555899999999988777777 6777754 33 33899999888899999999999998766
Q ss_pred c
Q 028806 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 275 ~ 275 (466)
T COG2319 275 S 275 (466)
T ss_pred c
Confidence 5
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-14 Score=111.17 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=115.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|-|||..|+.+.. ..+.+||...|..++++++|...|.+++|+.+|+.+++|+.|..|.+|.-...+. + -.. |
T Consensus 18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-L--kYS-H 92 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-L--KYS-H 92 (1081)
T ss_pred eEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-e--eec-c
Confidence 578999998777654 5799999999999999999999999999999999999999999999998653321 1 133 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
...|.|+ |+|-...+++++-. ..-+|..... .+...+.. ..|.+.+|..||++++.|-.+|+|.+-+-
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss--~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSS--SRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhh--eeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 8999999 99999888887764 3557876542 23223222 36889999999999999999999998754
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=105.25 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=105.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC--EEEEecCC---------------------
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR--KVVCGSQS--------------------- 58 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d--------------------- 58 (203)
...|.|..|++|+.||+|+||.+.++.++.++.- .+.|.+++|+|.+. .|+++...
T Consensus 407 Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~el 485 (733)
T KOG0650|consen 407 SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKEL 485 (733)
T ss_pred EecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhh
Confidence 4578899999999999999999999998877653 34577777777543 22222111
Q ss_pred ------------------------------------------------------------CeEEEEEcCCccccceeeec
Q 028806 59 ------------------------------------------------------------GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 59 ------------------------------------------------------------~~i~~wd~~~~~~~~~~~~~ 78 (203)
..|.|+++.. ......|..
T Consensus 486 l~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK-~~sQ~PF~k 564 (733)
T KOG0650|consen 486 LASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK-RKSQSPFRK 564 (733)
T ss_pred hhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc-ccccCchhh
Confidence 1222222221 111112222
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+.+.++ |+|.-.+|++++.. .|++||+..+..++.+..... .|..|+.+|.|..|+.++.|+.+..||+.-.
T Consensus 565 -skG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 565 -SKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred -cCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 34456667 99999898888764 699999988777777765544 7999999999999999999999999998655
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=105.96 Aligned_cols=150 Identities=13% Similarity=0.221 Sum_probs=107.8
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEee----cCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCcc---------
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRS----EFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFK--------- 70 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~----~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~--------- 70 (203)
|.+--|+.|-.-|.|.+.+....+....+ ......++++.|-|.+ ..++++-.+|.+++||.....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 34555666766788888876542211111 1124679999999954 566677789999999774210
Q ss_pred ------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEE
Q 028806 71 ------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 71 ------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~ 131 (203)
.++..+.- ....+... |+|||++|++.+.||.++|+|..+.+.+..++..-+ ...|++|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~-~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-GLLCvcW 340 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHI-GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-GLLCVCW 340 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEe-ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-ceEEEEE
Confidence 01111111 23456666 899999999999999999999998887777665544 6899999
Q ss_pred eCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 132 SHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+|||+||++|+.|..|.||.+....
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccce
Confidence 9999999999999999999987654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=104.19 Aligned_cols=131 Identities=10% Similarity=0.158 Sum_probs=106.9
Q ss_pred CcccccCCE-EEEEcCCCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMK-LLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~-l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
|.|||..++ |.+++.+|.|.+||+....++. -.+.|..+...|+|+|.. .+|++.+.|..|++||.+. ......+.
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~ 248 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLT 248 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc-ccccceee
Confidence 357777664 5678899999999998765543 345789999999999955 5678899999999999973 45555555
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
...+...+ |.++|.+|+.|+..|.|..||++. ..++..+..|.. .|++++|-|..
T Consensus 249 --y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 --YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-SVTRVAFQPSP 305 (673)
T ss_pred --ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-ceeEEEeeecc
Confidence 46788889 999999999999999999999986 457888888855 79999998875
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-12 Score=97.93 Aligned_cols=151 Identities=11% Similarity=0.122 Sum_probs=103.7
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcC-CCeE--EEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc---
Q 028806 1 MTFAADAMKLLGT-SGDGTLSVCNLR-KNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC--- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~vw~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~--- 72 (203)
|+++|++++|+++ ..++.|.+|++. ++.. +.... .......++++|++++|++++. ++.|.+|++...+..
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 4689999988665 457889999986 3432 22222 2335678999999999888764 789999999643322
Q ss_pred ceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceee-----eeccCCCCceEEEEEeCCCCeEEEEeC-C
Q 028806 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQ-----PIAEHSEYPIESLALSHDRKFLGSISH-D 144 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~-----~~~~~~~~~i~~i~~~~~~~~l~~~~~-d 144 (203)
+..+.. ......+ ++|+++++++++. ++.|.+||+.+...+. ......+.....+.|+|++++|+++.. +
T Consensus 119 ~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 119 IQIIEG--LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred eeeccC--CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC
Confidence 222222 2234455 8999999876664 6899999997633221 111111224678999999999988875 8
Q ss_pred CcEEEEeCCC
Q 028806 145 SMLKLWDLDD 154 (203)
Q Consensus 145 ~~i~iwd~~~ 154 (203)
+.|.+|++..
T Consensus 197 ~~v~v~~~~~ 206 (330)
T PRK11028 197 SSVDVWQLKD 206 (330)
T ss_pred CEEEEEEEeC
Confidence 9999999973
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=101.80 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=115.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeE-EEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCcc--c--ccee
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK--D--CSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~--~--~~~~ 75 (203)
.|+.+...++.+..=|...+||++++.. ...+.-|...|.+++++|- ..+|++++.|++++|||++... . .+..
T Consensus 286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst 365 (498)
T KOG4328|consen 286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST 365 (498)
T ss_pred cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence 4666667777777667999999997543 5666778889999999995 4678999999999999997522 1 1222
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc----CCceeeeeccCCC--C--ceEEEEEeCCCCeEEEEeCCCc
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL----PNRIIQPIAEHSE--Y--PIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~----~~~~~~~~~~~~~--~--~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
.. |...|.+. |+|.+..|++-+.|..|+|||.. .-.+..++..... . ......|.|+..++++|-.-..
T Consensus 366 -~~-HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ 443 (498)
T KOG4328|consen 366 -LP-HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP 443 (498)
T ss_pred -cc-ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcc
Confidence 33 78889999 99998889999999999999973 2233333321111 1 2345789999999999999999
Q ss_pred EEEEeCCCcc
Q 028806 147 LKLWDLDDIL 156 (203)
Q Consensus 147 i~iwd~~~~~ 156 (203)
|-|+|-..++
T Consensus 444 IDv~~~~~~q 453 (498)
T KOG4328|consen 444 IDVFDGNGGQ 453 (498)
T ss_pred eeEEcCCCCE
Confidence 9999987776
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-12 Score=89.40 Aligned_cols=146 Identities=16% Similarity=0.207 Sum_probs=110.1
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
..|..+-|+.++.|+.++-||+++|+..+++++|...|.++.--.....+++|+.||++++||+++ ++++..+.. ...
T Consensus 122 ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~-yk~ 199 (325)
T KOG0649|consen 122 LDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEP-YKN 199 (325)
T ss_pred eccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEecc-ccC
Confidence 457777788888999999999999999999999999999999856667899999999999999986 455555543 221
Q ss_pred ----------ceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 83 ----------SVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 83 ----------~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.|.++ .-+..++++|+. -.+.+|.+++.++..++.-. . ++..+.|.. ..+++++..+.+.-|.+
T Consensus 200 ~~~lRp~~g~wigal-a~~edWlvCGgG-p~lslwhLrsse~t~vfpip-a-~v~~v~F~~--d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 200 PNLLRPDWGKWIGAL-AVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIP-A-RVHLVDFVD--DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred hhhcCcccCceeEEE-eccCceEEecCC-CceeEEeccCCCceEEEecc-c-ceeEeeeec--ceEEEeccccceeeeee
Confidence 12222 345556666554 46899999998888777654 2 577778854 46777777888888887
Q ss_pred CCcc
Q 028806 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
..-.
T Consensus 274 ~Gvl 277 (325)
T KOG0649|consen 274 NGVL 277 (325)
T ss_pred ccEE
Confidence 6544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=102.33 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=103.6
Q ss_pred cccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCe--EEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGT--VLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~~wd~~~~~~~~~~ 75 (203)
+|||||+.|+..+. +..|++|++.++... .+..+.+.+...+|+|+|+.|+ +.+.++. |++||+.. .....
T Consensus 208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~ 284 (435)
T PRK05137 208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--GTTTR 284 (435)
T ss_pred EECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC--CceEE
Confidence 69999999888753 468999999887653 3444556677899999998775 4455554 77777753 33445
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC---CcEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SMLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~ 148 (203)
+.. +....... |+|+|+.|+..+. +| .|+++|+..+.... +..+.. .+....|+|+|++|+....+ ..|.
T Consensus 285 Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~-~~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 285 LTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGG-RYSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred ccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCC-cccCeEECCCCCEEEEEEcCCCceEEE
Confidence 555 55555556 9999999887764 33 58888877665543 332322 46678899999999877643 3688
Q ss_pred EEeCCCcc
Q 028806 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+|++.+..
T Consensus 362 ~~d~~~~~ 369 (435)
T PRK05137 362 VMKPDGSG 369 (435)
T ss_pred EEECCCCc
Confidence 88875543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.4e-14 Score=106.89 Aligned_cols=125 Identities=12% Similarity=0.169 Sum_probs=103.9
Q ss_pred EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee-eeccCCCceeEE-Eee--CCCEEEEEcCCCcEE
Q 028806 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVGLSPNSVDAL-LKL--DEDRVITGSENGLIS 105 (203)
Q Consensus 30 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~i~ 105 (203)
.+.+++|.+.|.++.|+.+|.+|++|+.|-.+.|||... .+.+.. -++ |...|.++ |-| ....+++|..|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~Tg-HtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSISTG-HTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchh-cceeeeeecc-cccceeEEeeeccCCCeEEEeccCcceEE
Confidence 357789999999999999999999999999999999974 444444 466 89999999 866 567888999999999
Q ss_pred EEEccC----------CceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCccc
Q 028806 106 LVGILP----------NRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 106 ~~d~~~----------~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
++|+.. ...+..+..|.. .|..++-.|++ ..+.+++.||+|+-+|++....
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhh-hhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 999974 234555677866 78899999998 6788999999999999987543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-12 Score=98.60 Aligned_cols=149 Identities=11% Similarity=0.188 Sum_probs=101.2
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCeEEE-------eecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCc-c
Q 028806 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQT-------RSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYF-K 70 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~vw~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~-~ 70 (203)
++++|++++++++ ..++.|.+|++.+...+. .+. .......++|+|+++++++++. ++.|.+|++... +
T Consensus 131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~ 209 (330)
T PRK11028 131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG 209 (330)
T ss_pred eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence 3689999988554 567999999997632221 111 2344678999999999988876 899999999632 1
Q ss_pred --ccceeeeccCC------CceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCce----eeeeccCCCCceEEEEEeCCCC
Q 028806 71 --DCSDRFVGLSP------NSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRI----IQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 71 --~~~~~~~~~~~------~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~----~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
..+..+.. .. .....+ ++|++++++++.. ++.|.+|++..... +...... . ....+.++|+|+
T Consensus 210 ~~~~~~~~~~-~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~-~p~~~~~~~dg~ 286 (330)
T PRK11028 210 EIECVQTLDM-MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-T-QPRGFNIDHSGK 286 (330)
T ss_pred CEEEEEEEec-CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-c-cCCceEECCCCC
Confidence 11222221 11 112245 8999999999865 68899999865332 2222222 1 346789999999
Q ss_pred eEEEEeC-CCcEEEEeCC
Q 028806 137 FLGSISH-DSMLKLWDLD 153 (203)
Q Consensus 137 ~l~~~~~-d~~i~iwd~~ 153 (203)
+|+++.. ++.|.+|++.
T Consensus 287 ~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 287 YLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEEccCCcEEEEEEc
Confidence 9998774 8899999874
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-13 Score=96.81 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=121.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-C--eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-N--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS---- 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~---- 73 (203)
|.|+|..+.|++++.|..-+||.... + ++...+..+...++++.|+|.++.|++|+....|.||-+... ...
T Consensus 61 vdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E-NdWWVsK 139 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE-NDWWVSK 139 (361)
T ss_pred EeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc-cceehhh
Confidence 57999999999999999999999843 3 344555667888999999999999999999999999987532 222
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc-----C-------------CceeeeeccCCCCceEEEEEeCC
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-----P-------------NRIIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~-----~-------------~~~~~~~~~~~~~~i~~i~~~~~ 134 (203)
++-+. ....|.++ |+|++-++++|+.|+..+|+..- + |+.+.++... .+.+..+.|+|+
T Consensus 140 hikkP-irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~s 217 (361)
T KOG1523|consen 140 HIKKP-IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSPS 217 (361)
T ss_pred hhCCc-cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCCC
Confidence 12233 56678999 99999999999999999998642 1 2233333222 347999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCccc
Q 028806 135 RKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|..|+-.+.|+.+.+-|.....+
T Consensus 218 G~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred CCEeeEecCCCceEEeecCCCch
Confidence 99999999999999999877753
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-12 Score=100.83 Aligned_cols=150 Identities=16% Similarity=0.161 Sum_probs=100.0
Q ss_pred cccccCCEEEEE-cCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeee
Q 028806 2 TFAADAMKLLGT-SGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~ 77 (203)
+|||||+.|+.. ..+| .|++||+.++.... +..+...+....|+|+++.|+..+. .+...+|.+...+.....+.
T Consensus 249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 699999988765 3344 58999998876543 4444556788999999998876665 34445554322222334444
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCc---EEEE
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM---LKLW 150 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~---i~iw 150 (203)
. ........ |+|+|++|+..+.+ ..|.+||+.++.... +... . ......|+|||++|+.++.++. +.++
T Consensus 328 ~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~-~~~~p~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 328 W-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-F-LDETPSIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred c-CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-C-CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3 33344455 89999999876543 358889998876543 3322 1 2456789999999998887654 6777
Q ss_pred eCCCcc
Q 028806 151 DLDDIL 156 (203)
Q Consensus 151 d~~~~~ 156 (203)
++....
T Consensus 404 ~~~G~~ 409 (429)
T PRK03629 404 STDGRF 409 (429)
T ss_pred ECCCCC
Confidence 775443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=106.94 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=102.5
Q ss_pred eecCCccceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEE
Q 028806 32 RSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLIS 105 (203)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~ 105 (203)
.+.+|...|.+++.+|+++++++++.. ..|++|...+. .....+.. |.-.|+.+ |+|+|++|++++.|+++.
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~-HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEG-HSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecc-cceEEEEEEECCCCcEEEEeecCceEE
Confidence 556799999999999999999998764 46999998754 45567888 99999999 999999999999999999
Q ss_pred EEEccCCc----eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 106 LVGILPNR----IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 106 ~~d~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+|...... .....+.|+. -|++..|+|++.+++|++.|..+++|.....
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtR-IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTR-IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eeeeecccchhhhhccccccce-EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99875432 1233667855 7999999999999999999999999988766
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-11 Score=90.67 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=110.7
Q ss_pred ccccc--CCEEEEEc--CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCe-EEEEEcCCccccceee
Q 028806 2 TFAAD--AMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp~--~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~ 76 (203)
++||+ +.+||.-+ ..|.|.+||..+-+.+..+..|.+.+.+++|+++|.+|++++..|+ |+||.+.. +..+..|
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eF 212 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEF 212 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeee
Confidence 44444 44777643 3689999999999999999999999999999999999999999886 78999974 5666666
Q ss_pred eccCC--CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce--------------------ee-----------------
Q 028806 77 VGLSP--NSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--------------------IQ----------------- 116 (203)
Q Consensus 77 ~~~~~--~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~--------------------~~----------------- 116 (203)
.. .. ..|.++ |+|++.+|.+.+..++|+++-+..... +.
T Consensus 213 RR-G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FA 291 (391)
T KOG2110|consen 213 RR-GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFA 291 (391)
T ss_pred eC-CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhcccee
Confidence 54 32 357778 999999999999999999998753110 00
Q ss_pred eeccCCCCce-EEEEEe--CCCCeEEEEeCCCcEEEEeCCCc
Q 028806 117 PIAEHSEYPI-ESLALS--HDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 117 ~~~~~~~~~i-~~i~~~--~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+.. .... ..+.+. +...++..++.||.++.|.+.-.
T Consensus 292 t~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 292 TAKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred EEEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 00000 0111 223344 46688889999999999988654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-12 Score=98.89 Aligned_cols=151 Identities=16% Similarity=0.147 Sum_probs=100.2
Q ss_pred CcccccCCEEEEEc---CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCC--eEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~~wd~~~~~~~~~ 74 (203)
.+|||||+.|+..+ .+..|++|++.+++... +......+..++|+|||+.|+.. +.++ .|++||+.. +. ..
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~-~~ 280 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IR 280 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CC-EE
Confidence 36999999988754 34579999998875432 22223345568999999988764 3344 588889864 33 33
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCC-Cc--EEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC---CcE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN-GL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~~--i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i 147 (203)
.+.. ....+... |+|+|+.|+..+.. +. |+++++.++... .+..... ......|+|+|++|+..+.+ ..|
T Consensus 281 ~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 281 QVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred EccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC-CccCEEECCCCCEEEEEEccCCCceE
Confidence 4444 44455566 99999998877653 44 555566665543 3333322 45678999999998876643 358
Q ss_pred EEEeCCCccc
Q 028806 148 KLWDLDDILK 157 (203)
Q Consensus 148 ~iwd~~~~~~ 157 (203)
.+||+.++..
T Consensus 358 ~~~dl~~g~~ 367 (429)
T PRK03629 358 AKQDLATGGV 367 (429)
T ss_pred EEEECCCCCe
Confidence 8999887653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.5e-12 Score=98.70 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=102.6
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCC--eEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~~wd~~~~~~~~~ 74 (203)
.+|+|+|+.|++.+. ...|++|++.+++... +....+....++|+|+|+.|+ +.+.++ .|++||+.. +. ..
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~-~~ 285 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS-RQ-LT 285 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC-CC-eE
Confidence 369999999988764 3469999998876533 333344456789999998775 444444 689999864 33 34
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcC-CCc--EEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC---cE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NGL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i 147 (203)
.+.. +....... |+|+|+.|+..+. .+. |+++++.+++... +..+.. ....++|+|+|++|+..+.++ .|
T Consensus 286 ~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~-~~~~~~~SpDG~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 286 RLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN-YNARASVSPDGKKIAMVHGSGGQYRI 362 (433)
T ss_pred ECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCC-CccCEEECCCCCEEEEEECCCCceeE
Confidence 4554 44444556 9999999887764 444 6666776665433 222212 345689999999998765433 59
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
.+||+.++...
T Consensus 363 ~v~d~~~g~~~ 373 (433)
T PRK04922 363 AVMDLSTGSVR 373 (433)
T ss_pred EEEECCCCCeE
Confidence 99999776544
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-13 Score=102.95 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=121.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|.|-|-.-+|++++..|.++--|+.+|+.+..+....+.+..+.-+|-+..+-+|..+|+|.+|.-. ...++..+.+ |
T Consensus 215 LeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~-skePLvKiLc-H 292 (545)
T KOG1272|consen 215 LEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN-SKEPLVKILC-H 292 (545)
T ss_pred hcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC-CcchHHHHHh-c
Confidence 4577888889999999999999999999998888878888899999988888899999999999986 4677777777 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.++|.++ +.++|.|+++.+.|+.++|||++....+.++... - +...+++|..| +++++....+.||.
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~-~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H-PASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C-Ccccccccccc--ceeeecCCeeeeeh
Confidence 9999999 8999999999999999999999987766666552 2 56778887665 34445566889994
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-13 Score=103.31 Aligned_cols=124 Identities=18% Similarity=0.252 Sum_probs=105.1
Q ss_pred eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC-------ccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCc
Q 028806 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-------FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGL 103 (203)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-------~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~ 103 (203)
++..|...|+.++|+|....|++++.++.+.+|.+.. .-.++.+|.+ |.++|.|+ ..+++..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccCce
Confidence 5556788899999999999999999999999999932 1135667888 99999999 7899999999999999
Q ss_pred EEEEEccCC----------ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 104 ISLVGILPN----------RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 104 i~~~d~~~~----------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|+.|++... .....+.+|++ .|+.+++++....|++++.||+++.|+.....+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 999965421 23456788977 899999999999999999999999999877666
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=90.11 Aligned_cols=110 Identities=9% Similarity=0.133 Sum_probs=81.1
Q ss_pred CcccccCCEEEEE--cCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~ 75 (203)
++|+|+|+.+|+. ..++.|.+|++. ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+.. ...+..
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~ 140 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST 140 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence 5799999986554 456799999997 55555553 456788999999999998874 46799999973 344444
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceeeee
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPI 118 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~ 118 (203)
+. +. .+..+ |+|+|++++++.. |..++||+.. |+.+...
T Consensus 141 ~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 141 FE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred cc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 43 23 35666 9999999998874 5678899874 6655443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=96.92 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=99.1
Q ss_pred ccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCcc--------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028806 37 EEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFK--------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 37 ~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~--------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~ 106 (203)
..++.++.|.++.. .+++|+.|..|++|-+.... ..+..+.. |...++++ |+|+|.++++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~-H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSR-HTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccC-CcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 46799999998776 99999999999999885321 11234455 88999999 9999999999999999999
Q ss_pred EEcc--------C--------CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 107 VGIL--------P--------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 107 ~d~~--------~--------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
|-.. + ......+.+|.. .|+.++|+|+++++++++.|..+++||+..++...
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCCceeeeeeccceEEEEEeccceeEe
Confidence 9765 2 123455677755 79999999999999999999999999999987553
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-12 Score=104.98 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=114.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CccceEEEEEe-eCCCEEEEecCCCeEEEEEcCCccc--cceeee
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLM-KNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~ 77 (203)
.|..+..+|++++.-..|+|||.........+.. ....|+++.-+ +.|+.++.|-.||.|++||.+.... .+....
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 5666666777777779999999998877776653 34456666543 3578999999999999999986432 344455
Q ss_pred ccCCCc--eeEE-EeeCCCE-EEEEcCCCcEEEEEccCCc--eeeeeccCC--CCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 78 GLSPNS--VDAL-LKLDEDR-VITGSENGLISLVGILPNR--IIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 78 ~~~~~~--v~~~-~~~~~~~-l~~~~~d~~i~~~d~~~~~--~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
. |... |..+ +.+.|-. |++|+.+|.|++||++... ....+..|. ++..+++..++....+|+|+. +.|+|
T Consensus 1252 ~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1252 E-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred c-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE
Confidence 5 6555 7777 7665544 9999999999999998732 223333433 224899999999999999998 99999
Q ss_pred EeCCCcccC
Q 028806 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
|++...+..
T Consensus 1330 y~~~G~~l~ 1338 (1387)
T KOG1517|consen 1330 YSLSGEQLN 1338 (1387)
T ss_pred EecChhhhc
Confidence 999765543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=97.51 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=102.9
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCC--eEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~~wd~~~~~~~~~~ 75 (203)
+|+|+|++|+.+... ..|++|++.+++... +..+...+.+++|+|+++.|+. .+.++ .|++|++.. .....
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~--~~~~~ 272 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG--KQLTR 272 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC--CCEEE
Confidence 699999999887643 479999998875533 3334455677899999987764 44444 588888764 23334
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC---cEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~ 148 (203)
+.. +....... |+|+|+.|+..+. .+ .|+++++.+++... +..+.. .+..+.|+|++++|+.++.++ .|.
T Consensus 273 l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~-~~~~~~~spdg~~i~~~~~~~~~~~i~ 349 (417)
T TIGR02800 273 LTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGG-YNASPSWSPDGDLIAFVHREGGGFNIA 349 (417)
T ss_pred CCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCC-CccCeEECCCCCEEEEEEccCCceEEE
Confidence 444 44444455 8999998887654 33 57788887766443 333323 567889999999999888665 799
Q ss_pred EEeCCCcc
Q 028806 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+||+.+..
T Consensus 350 ~~d~~~~~ 357 (417)
T TIGR02800 350 VMDLDGGG 357 (417)
T ss_pred EEeCCCCC
Confidence 99987754
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.2e-12 Score=100.27 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=117.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEE----eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC---ccccce
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY---FKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~ 74 (203)
.+++.|.+.+.. .+..+.+|......... .-..|...+++.+++|.+++++++..||.|.+|.--. .....+
T Consensus 167 ~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 167 VDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccce
Confidence 345555554444 34568888887643111 1124666789999999999999999999999996432 123455
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+.. |...|.++ |+++|.+|++|+..|.+.+|.+.+++ .+-++.- +++|..+.++||+.+.+....|+.|.+....
T Consensus 246 ~lHW-H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRL-gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 246 LLHW-HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRL-GSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EEEe-cccccceeEEecCCceEeecccceEEEEEeecCCC-ccccccc-CCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 6677 88999999 99999999999999999999999988 3334443 4489999999999999999999999999887
Q ss_pred CcccC
Q 028806 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 323 dl~~k 327 (792)
T KOG1963|consen 323 DLEIK 327 (792)
T ss_pred chhhh
Confidence 76554
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=100.14 Aligned_cols=143 Identities=18% Similarity=0.238 Sum_probs=116.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
..++.++.||.+.+.+ ..++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-. +-...++.. ...+|+|+
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q-~~~~v~c~ 151 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQ-NEESIRCA 151 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhh-cCceeEEE
Confidence 4678888999999887 4456667788999999999999999999999999999999853 444444554 67889999
Q ss_pred -EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 88 -LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 88 -~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|.|+.+.++.+..+ .+.+=.+.....+..++.|.+ -|.++.|++....+++|+.|-..+|||.-...
T Consensus 152 ~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~ 219 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQGG-HISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN 219 (737)
T ss_pred EECCCCCceEEecCC-eEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccCcc
Confidence 99988877766544 466666666666777899954 89999999999999999999999999975543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=97.10 Aligned_cols=148 Identities=15% Similarity=0.150 Sum_probs=99.0
Q ss_pred CcccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCe--EEEEEcCCccccce
Q 028806 1 MTFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGT--VLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~-~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~~wd~~~~~~~~~ 74 (203)
++|+|+|+.|+. .+.++ .|++|++.++... .+..+......++|+|+++.|+.++. .+. |+++++.. ....
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~ 329 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAE 329 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeE
Confidence 369999997754 44444 6999999887653 45555555677899999998887653 444 55666543 2233
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC---CcE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i 147 (203)
.+.. .......+ |+|+|++|+..+.++ .|.+||+.+++.. .+... . ......|+|||++|+..+.+ +.|
T Consensus 330 ~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 330 RLTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred Eeec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCCCEEEEEEecCCceEE
Confidence 3333 33333445 899999998765432 5899999887765 33322 2 34567999999988876642 458
Q ss_pred EEEeCCCc
Q 028806 148 KLWDLDDI 155 (203)
Q Consensus 148 ~iwd~~~~ 155 (203)
.++++.+.
T Consensus 406 ~~~~~~g~ 413 (433)
T PRK04922 406 AAVSTDGR 413 (433)
T ss_pred EEEECCCC
Confidence 88888554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-12 Score=100.79 Aligned_cols=157 Identities=16% Similarity=0.165 Sum_probs=112.2
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeE--EE----eecCCccceEEEEEeeCC--CEEEEecCCCeEEEEEcCCcccc
Q 028806 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTV--QT----RSEFSEEELTSVVLMKNG--RKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~vw~~~~~~~--~~----~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
.|+|. ..+|+.|..+|.|.+||++.+.. .. ..-.|..+++.+.|..+. .-|++++.||.|..|+++....+
T Consensus 249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred EeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccc
Confidence 56774 45778889999999999987543 22 223578899999998644 44899999999999988632100
Q ss_pred --------------------------------------------------------------ceeeeccCCCceeEE-Ee
Q 028806 73 --------------------------------------------------------------SDRFVGLSPNSVDAL-LK 89 (203)
Q Consensus 73 --------------------------------------------------------------~~~~~~~~~~~v~~~-~~ 89 (203)
...+.. |.++|+++ ++
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~-h~g~v~~v~~n 407 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT-HIGPVYAVSRN 407 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc-cCcceEeeecC
Confidence 001112 45667777 77
Q ss_pred eCCCEEEEEcCCCcEEEEEcc-CCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEEeCCCcccCCC
Q 028806 90 LDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 90 ~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
|=+..++..+.|..+++|... ...++..+..+.. .+++++|||... .++++..+|.|.+||+........
T Consensus 408 PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 408 PFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred CCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 766555555558999999977 5667777777755 699999999764 566777899999999976655443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=91.19 Aligned_cols=152 Identities=10% Similarity=0.066 Sum_probs=102.6
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
|+|++||..+++++. +..|.|||..++..+.......+.+.-+.|+||+.+|+.+..|+..++|..........-..+
T Consensus 201 mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg- 279 (445)
T KOG2139|consen 201 MQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG- 279 (445)
T ss_pred EEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc-
Confidence 579999999988875 678999999998765544344567899999999999999999999999965432222222232
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-Cc-----------ee---eee------ccC--CCCceEEEEEeCCC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NR-----------II---QPI------AEH--SEYPIESLALSHDR 135 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-~~-----------~~---~~~------~~~--~~~~i~~i~~~~~~ 135 (203)
.+.|... |+|+|.+|+.++.... ++|.+.. ++ .+ ..+ .+. -...+.+++|.|.|
T Consensus 280 -sgrvqtacWspcGsfLLf~~sgsp-~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 280 -SGRVQTACWSPCGSFLLFACSGSP-RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred -CCceeeeeecCCCCEEEEEEcCCc-eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence 3455555 9999998887665432 3454421 00 00 000 110 01368899999999
Q ss_pred CeEEEEeCCC--------cEEEEeCCCc
Q 028806 136 KFLGSISHDS--------MLKLWDLDDI 155 (203)
Q Consensus 136 ~~l~~~~~d~--------~i~iwd~~~~ 155 (203)
.+|++.-..+ .|.+||.+..
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 9999876433 3667776544
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-13 Score=110.20 Aligned_cols=115 Identities=17% Similarity=0.321 Sum_probs=105.0
Q ss_pred eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc
Q 028806 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~ 110 (203)
.+.+|...|+|+.|...|.++++|+.|..++||.+.+ ..++....+ |.+.++.+ .+.....+++++.|..|++|-+.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCCC-CccccchhccchhhhhhhhcccCceEEEEecC
Confidence 3457888999999999999999999999999999875 688899999 99999999 67788889999999999999999
Q ss_pred CCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 111 PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
++.++..+.+|++ +|++++|+|-. +.+.||++++||.+
T Consensus 263 ~~~pvsvLrghtg-avtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTG-AVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred CCchHHHHhcccc-ceeeeccCccc----cCCCCCceEecccc
Confidence 9999999999977 89999999975 66789999999998
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.5e-12 Score=103.35 Aligned_cols=148 Identities=19% Similarity=0.239 Sum_probs=112.6
Q ss_pred cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccc--eEEEEEeeCCC-EEEEecCCCeEEEEEcCCc-cccceeeec
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEE--LTSVVLMKNGR-KVVCGSQSGTVLLYSWGYF-KDCSDRFVG 78 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~-~~~~~~~~~ 78 (203)
.|+.|++|..||.|++||.+.. ..+...+.|... |..+.+.+.|- .|++|+.+|.|++||++.. ....-.+..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 4789999999999999998753 245566677766 99999998774 4999999999999999863 111112222
Q ss_pred cCC--C-ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC------CCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 79 LSP--N-SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------EYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 79 ~~~--~-~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
+. + .++++ .++....+++|+. +.|+||++. |+.+..++.+. ...+.|++|+|-.-.||+|+.|..|.
T Consensus 1300 -~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1300 -HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred -ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 22 3 48888 7899999999998 899999975 44444443322 23689999999999999999999999
Q ss_pred EEeCCCcc
Q 028806 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
||......
T Consensus 1377 iYs~~k~~ 1384 (1387)
T KOG1517|consen 1377 IYSCEKPR 1384 (1387)
T ss_pred EeecCCcC
Confidence 99876543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-11 Score=96.51 Aligned_cols=148 Identities=12% Similarity=0.093 Sum_probs=115.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec---CCccceEEEEEeeCC-----CEEEEecCCCeEEEEEcCCcccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNG-----RKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
.+|..||++++.|..+|+|.+-+... +....++ +..++|++++|+|.. ..+++.....++.+|.+. +..
T Consensus 138 CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~ 214 (1081)
T KOG1538|consen 138 CSWTNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQ 214 (1081)
T ss_pred eeecCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--cee
Confidence 36899999999999999999987543 3322333 467899999999854 467788888888888875 444
Q ss_pred ceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+..-.. -.-...|+ +.++|.+++.|+.++.+++|- +.|-.+.++-.. +..|+.++..|++++++.|+.||+|..|+
T Consensus 215 Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 215 IGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred eccccc-CCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 443333 33345667 899999999999999999996 557677666554 45899999999999999999999999998
Q ss_pred CCC
Q 028806 152 LDD 154 (203)
Q Consensus 152 ~~~ 154 (203)
+..
T Consensus 292 l~f 294 (1081)
T KOG1538|consen 292 LIF 294 (1081)
T ss_pred hHH
Confidence 643
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-11 Score=94.28 Aligned_cols=153 Identities=16% Similarity=0.051 Sum_probs=96.7
Q ss_pred cccccCCEEEEEcC-CC----eEEEEEcCC---CeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEE--cCCcc
Q 028806 2 TFAADAMKLLGTSG-DG----TLSVCNLRK---NTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYS--WGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~----~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd--~~~~~ 70 (203)
+|||||+.|+..+. .| .+.+|++.. +................+|+|||+.|+..+ .++...+|. +...+
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 69999998877543 22 334467654 233223322223446789999999877655 456555554 43222
Q ss_pred ccceeeeccCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC---
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH--- 143 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--- 143 (203)
.....+.. ....+... |+|+|+.|+..... ..|.+||+.+++........ . .+....|+|||++|+....
T Consensus 317 ~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~-~-~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 317 QSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP-E-NKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred cceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC-C-CccceEECCCCCEEEEEECCCC
Confidence 23344444 44455566 99999999876543 46999999888765433222 2 4678999999998875442
Q ss_pred CCcEEEEeCCCccc
Q 028806 144 DSMLKLWDLDDILK 157 (203)
Q Consensus 144 d~~i~iwd~~~~~~ 157 (203)
...|+++++.++..
T Consensus 394 ~~~L~~vdl~~g~~ 407 (428)
T PRK01029 394 ESELYLISLITKKT 407 (428)
T ss_pred CceEEEEECCCCCE
Confidence 35688899876654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9e-12 Score=91.70 Aligned_cols=150 Identities=15% Similarity=0.177 Sum_probs=109.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCcc---c----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFK---D---- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~---~---- 71 (203)
++|++.-..++++..|-.|++|+-.. .....++. ....|.+++|-|.+ ..|++++. +-|.+|...... .
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRM 181 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccccccc
Confidence 46787666778889999999999765 33334432 34579999999965 55666665 459999875211 1
Q ss_pred ----cceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC
Q 028806 72 ----CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 72 ----~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
..+.+......+|+++ |.++|..+++++. +..|.|||..++..+.......+ .+.-+.|+||+.+|+.+..|+
T Consensus 182 ~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-g~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 182 MSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-GFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred ccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC-ceeeEEEcCCCCEEEEecccc
Confidence 1112221123678999 9999999999886 67899999999877665533323 688899999999999999999
Q ss_pred cEEEEeCC
Q 028806 146 MLKLWDLD 153 (203)
Q Consensus 146 ~i~iwd~~ 153 (203)
..++|+..
T Consensus 261 vfrlw~e~ 268 (445)
T KOG2139|consen 261 VFRLWQEN 268 (445)
T ss_pred eeeeehhc
Confidence 99999543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-10 Score=89.86 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=103.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeeeccC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
.|+|||+++++++.||.|.++|+.+.+.+.++... ....+++++++|+++++++ ..+.+.++|..+ .+.++.+.. .
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~-~ 119 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPT-G 119 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE---
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeeccc-c
Confidence 58999999999999999999999999999888764 4468899999999998876 589999999875 355555543 2
Q ss_pred -------CCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCCcee--eeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEE
Q 028806 81 -------PNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLK 148 (203)
Q Consensus 81 -------~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~ 148 (203)
...+..+ .+|....++.. -..+.|.+.|......+ ..+... . ......|+|+++|++++. .+..|-
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g-~-~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG-R-FPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---T-TEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-c-cccccccCcccceeeecccccceeE
Confidence 2345667 57777755544 44588888887665433 233332 2 578899999999877654 667888
Q ss_pred EEeCCCccc
Q 028806 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
++|..+...
T Consensus 198 viD~~~~k~ 206 (369)
T PF02239_consen 198 VIDTKTGKL 206 (369)
T ss_dssp EEETTTTEE
T ss_pred EEeeccceE
Confidence 998877643
|
... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=96.04 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=95.6
Q ss_pred CcccccCCEEEE-EcCCCeEEEEE--cCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLG-TSGDGTLSVCN--LRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~-~~~d~~i~vw~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~ 76 (203)
.+|||||+.|+. .+.++...||. +.++. ...+..+........|+|||+.|+..+. .+...+|.+...+.....+
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 369999998864 56677655555 44444 3455555555677899999998876554 4666677654322233333
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC---cEEE
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---MLKL 149 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~i 149 (203)
.. ........ |+|+|++|+..+.++ .|.+||+.+++... +... . ....+.|+|+|++|+.++.++ .+.+
T Consensus 324 t~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~-~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 324 TF-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-T-RDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ec-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-C-CccCceECCCCCEEEEEEecCCCEEEEE
Confidence 32 22223345 899999999877654 59999998877553 3322 2 346789999999988777443 3555
Q ss_pred EeCC
Q 028806 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
.++.
T Consensus 400 ~~~~ 403 (427)
T PRK02889 400 VSSD 403 (427)
T ss_pred EECC
Confidence 5553
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-12 Score=93.40 Aligned_cols=132 Identities=13% Similarity=0.173 Sum_probs=109.7
Q ss_pred ccccc--CCEEEEEcCCCeEEEEEcCCC-eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 2 TFAAD--AMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~--~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
.|-|. ...+|+++.-+.+++||.+.+ +++..+...+.+++++...|++++++++...+.+..||++........+.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 45555 678999999999999999864 567788877889999999999999999999999999999864444445777
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
-.+.++++ .+|.++++++++-|+.|+|+|+.+.+.+....... .++++.+.++-+
T Consensus 289 -~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs--~lt~il~~~~~n 344 (412)
T KOG3881|consen 289 -ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS--RLTFILLRDDVN 344 (412)
T ss_pred -ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc--cccEEEecCCcc
Confidence 88899999 89999999999999999999999977776655442 577888766543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.5e-11 Score=93.92 Aligned_cols=149 Identities=17% Similarity=0.095 Sum_probs=100.3
Q ss_pred cccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~ 75 (203)
+|||+|+.|+. .+.++ .|++|++.++.. ..+..+........|+|+++.|+..+. ++ .|+++|+.. ...+.
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~ 328 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRR 328 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEE
Confidence 69999998754 44444 478889887765 445555666778899999998887653 33 677778653 33444
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC------C
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------S 145 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~ 145 (203)
+.. ....+... |+|+|+.|+....+ ..|.+|++..+.. ..+... . .+..+.|+|||+.|+..+.+ .
T Consensus 329 lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 543 44445556 99999999887643 3588888765443 334322 2 46778999999998765532 3
Q ss_pred cEEEEeCCCccc
Q 028806 146 MLKLWDLDDILK 157 (203)
Q Consensus 146 ~i~iwd~~~~~~ 157 (203)
.|+++++.+...
T Consensus 405 ~L~~~dl~g~~~ 416 (435)
T PRK05137 405 KLYTVDLTGRNE 416 (435)
T ss_pred eEEEEECCCCce
Confidence 578888865443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-11 Score=99.94 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=111.1
Q ss_pred cccCCEEEEEcCCCeEEEEEcCC-----C--eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-c----
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRK-----N--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-D---- 71 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~-----~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~---- 71 (203)
++.+.++++|+.||+|++|+.+. + +...+......++..+...+.+..+++++.||.|++.++.... .
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence 34558999999999999999864 1 1222333346788999999999999999999999999987421 1
Q ss_pred -cceeeeccCCCceeEE--E-eeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEeCCC
Q 028806 72 -CSDRFVGLSPNSVDAL--L-KLDE-DRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 72 -~~~~~~~~~~~~v~~~--~-~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
+......-..+.+..+ | ...+ ..++.+...+.|..||++......+++... .+.|++++.+|.+++++.|+..|
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc
Confidence 1111111023344444 3 2233 378888888999999998766554443221 12799999999999999999999
Q ss_pred cEEEEeCCCcccCCC
Q 028806 146 MLKLWDLDDILKGSG 160 (203)
Q Consensus 146 ~i~iwd~~~~~~~~~ 160 (203)
.+.+||++=..+...
T Consensus 1218 ~l~lWDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1218 QLVLWDLRFRVPILS 1232 (1431)
T ss_pred eEEEEEeecCceeec
Confidence 999999986655543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=97.61 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=120.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC--C--eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRK--N--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
++||+++++|++..||.|.+|.--. + .....+..|...|.+++|+++|.+|++|+..+.+-+|.+.+.+ +.|-
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~---kqfL 288 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK---KQFL 288 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC---cccc
Confidence 6899999999999999999997543 1 2234566788999999999999999999999999999998644 3333
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC----------CCceEEEEEeCCCCeEEEEeCCCc
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS----------EYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
.+-..++..+ ++|++.+.+....|+.|.+....+.....++.+-. ..-.+.++++|.-+.++..+..++
T Consensus 289 PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~ 368 (792)
T KOG1963|consen 289 PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH 368 (792)
T ss_pred cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence 3256788888 89999999999999999998875544333332221 112466889997778888899999
Q ss_pred EEEEeCCCcccC
Q 028806 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
|.+||+-+....
T Consensus 369 vQ~ydl~td~~i 380 (792)
T KOG1963|consen 369 VQFYDLYTDSTI 380 (792)
T ss_pred EEEEecccccee
Confidence 999999776554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-11 Score=92.77 Aligned_cols=150 Identities=17% Similarity=0.073 Sum_probs=100.1
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCC--eEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i~~wd~~~~~~~~~~ 75 (203)
+|||+|+.|+..+.+ ..|.+|++.+++... +....+.+....|+|+|+.|+. .+.++ .|++||+.. .....
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~ 281 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS--RQLSR 281 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC--CCeEE
Confidence 699999999876543 469999998876533 3333344557899999998774 44444 688888864 23344
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC-C--cEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-S--MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~ 148 (203)
+.. +....... |+|+|+.|+..+. ++ .|+++++.+++........ . ......|+|+|++|+..... + .|.
T Consensus 282 lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~-~~~~~~~Spdg~~i~~~~~~~~~~~l~ 358 (430)
T PRK00178 282 VTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-N-YNARPRLSADGKTLVMVHRQDGNFHVA 358 (430)
T ss_pred ccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-C-CccceEECCCCCEEEEEEccCCceEEE
Confidence 544 44444555 8999998877654 33 5777787777654332221 2 23457899999999877643 3 588
Q ss_pred EEeCCCccc
Q 028806 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
+||+.++..
T Consensus 359 ~~dl~tg~~ 367 (430)
T PRK00178 359 AQDLQRGSV 367 (430)
T ss_pred EEECCCCCE
Confidence 899887654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-13 Score=106.07 Aligned_cols=151 Identities=12% Similarity=0.190 Sum_probs=119.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.|...|.+|++|+.|..++||...+..++..+.+|.+.|+.++.+.+...+++++.|..|++|.+.. +.++..+.+ |.
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrg-ht 274 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRG-HT 274 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHhc-cc
Confidence 3667789999999999999999999999999999999999999998888899999999999999984 678888899 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEcc--------------------------------------------------
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGIL-------------------------------------------------- 110 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~-------------------------------------------------- 110 (203)
+.|+++ |+|-. +.+.||++++||.+
T Consensus 275 gavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~ 350 (1113)
T KOG0644|consen 275 GAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW 350 (1113)
T ss_pred cceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh
Confidence 999999 87743 34445555555543
Q ss_pred ---------------------------------CCceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCcc
Q 028806 111 ---------------------------------PNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 111 ---------------------------------~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+|.....+.+|.+ .++.+.++|-. +...+++.||...|||+-.+.
T Consensus 351 ~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 351 RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 3333333334444 67788888854 455688899999999998776
Q ss_pred cCC
Q 028806 157 KGS 159 (203)
Q Consensus 157 ~~~ 159 (203)
+..
T Consensus 430 pik 432 (1113)
T KOG0644|consen 430 PIK 432 (1113)
T ss_pred cce
Confidence 653
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.6e-12 Score=93.33 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=93.3
Q ss_pred EEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec
Q 028806 41 TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA 119 (203)
Q Consensus 41 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 119 (203)
..++|+++|..|++++.||.+|+|++... ..+..... |...|.++ |+|+|++|++.+.+ ..+||+.+++..++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~-~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIA-HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHh-hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 57899999999999999999999998643 34444555 78899999 99999999999999 89999998772111111
Q ss_pred ----------------------------c-------------CC------------CCceEEEEEeCCCCeEEEEeCCCc
Q 028806 120 ----------------------------E-------------HS------------EYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 120 ----------------------------~-------------~~------------~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
. +. ...|++++.+++|++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 0 00 016899999999999999999999
Q ss_pred EEEEeCCCcccCCC
Q 028806 147 LKLWDLDDILKGSG 160 (203)
Q Consensus 147 i~iwd~~~~~~~~~ 160 (203)
|.|++..+++.-+-
T Consensus 305 Vai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQY 318 (398)
T ss_pred EEEEEeceeeeeEe
Confidence 99999988875543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=94.46 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=113.4
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-----cCC---
Q 028806 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-----LSP--- 81 (203)
Q Consensus 10 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-----~~~--- 81 (203)
|+.++....|+-+++..|+.+..+....+.++++..++-..+|++|+.+|.|.+||.+.. ..+..+.. .+.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k-srv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK-SRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh-hhheeeecccccCCCcccc
Confidence 333334467899999999998888877789999999999999999999999999999753 33333321 022
Q ss_pred --CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC--CeEEEEeCCCcEEEEeCCCcc
Q 028806 82 --NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR--KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 --~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..|+++ |+.+|-.+++|+..|.|.|||+++.+++..-......+|..+.|.+.+ ..|++. ....++|||-.++.
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK 305 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC
Confidence 248889 888899999999999999999999888765443334589999998863 444443 45689999988877
Q ss_pred cCCC
Q 028806 157 KGSG 160 (203)
Q Consensus 157 ~~~~ 160 (203)
+...
T Consensus 306 ~~as 309 (703)
T KOG2321|consen 306 PMAS 309 (703)
T ss_pred ceee
Confidence 6543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-10 Score=91.97 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=96.5
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCCe--EEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGT--VLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--i~~wd~~~~~~~~~~ 75 (203)
+|||||+.|+..+.+ ..|++|++.+++... +..........+|+|+|+.|+. .+.++. |+++|+.. .....
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t--g~~~~ 300 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT--KALTR 300 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC--CCeEE
Confidence 699999998876532 368899998876432 2222333457899999998765 455564 77777753 33444
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC-CC--cEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DS--MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~ 148 (203)
+.. +....... |+|+|+.|+..+. ++ .|+++|+.+++..... .... .....+|+|+|++|+..+. ++ .|.
T Consensus 301 lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 301 ITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGE-QNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred Ccc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCC-CCcCeeECCCCCEEEEEEecCCceEEE
Confidence 544 44444555 9999998877654 33 4666777777654322 1212 2345789999999887664 33 466
Q ss_pred EEeCCCccc
Q 028806 149 LWDLDDILK 157 (203)
Q Consensus 149 iwd~~~~~~ 157 (203)
++|+.++..
T Consensus 378 ~~dl~~g~~ 386 (448)
T PRK04792 378 RQDLETGAM 386 (448)
T ss_pred EEECCCCCe
Confidence 678777654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-10 Score=89.71 Aligned_cols=130 Identities=13% Similarity=0.205 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE--ecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCC
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC--GSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDED 93 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~ 93 (203)
.+++++++........+. ..++|+++.|+|+++.+++ |-.-..+.+||++ +.++..+ ..++-.++ |+|.|+
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df---~egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF---PEGPRNTAFFNPHGN 324 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC---CCCCccceEECCCCC
Confidence 468888887545544444 3789999999999977654 4456789999986 4555444 34566667 899999
Q ss_pred EEEEEcC---CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC------CCcEEEEeCCCc
Q 028806 94 RVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH------DSMLKLWDLDDI 155 (203)
Q Consensus 94 ~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------d~~i~iwd~~~~ 155 (203)
+|+.++- .|.|-|||+.+.+++..+... ..+-+.|+|||++++|++. |+.++||+....
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 9998764 588999999998888888776 2456799999999998874 688999997654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.7e-11 Score=92.19 Aligned_cols=154 Identities=12% Similarity=0.195 Sum_probs=118.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec------CCcc-----ceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE------FSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 70 (203)
..++-..+|++|+.+|.|..||.++...+..+. .|.+ .|+++.|+.+|-.+++|...|.+.+||++...
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 456777899999999999999998765544443 2333 39999999999999999999999999999765
Q ss_pred ccceeeeccCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
..+..-.. ..-++..+ |.+. ++.++ ......++|||-.+|++...+... . .+..+++-|++-.++++-.+..+
T Consensus 262 pl~~kdh~-~e~pi~~l~~~~~~~q~~v~-S~Dk~~~kiWd~~~Gk~~asiEpt-~-~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 262 PLLVKDHG-YELPIKKLDWQDTDQQNKVV-SMDKRILKIWDECTGKPMASIEPT-S-DLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred ceeecccC-CccceeeecccccCCCceEE-ecchHHhhhcccccCCceeecccc-C-CcCceeeecCCceEEEecCCCcc
Confidence 54444344 45677777 7443 33444 445568999999999998887654 3 58999999999999999999999
Q ss_pred EEEeCCCcccCC
Q 028806 148 KLWDLDDILKGS 159 (203)
Q Consensus 148 ~iwd~~~~~~~~ 159 (203)
..|-+...-+..
T Consensus 338 ~~yyiP~LGPaP 349 (703)
T KOG2321|consen 338 HTYYIPSLGPAP 349 (703)
T ss_pred eeEEccccCCCc
Confidence 888887765543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=83.83 Aligned_cols=148 Identities=15% Similarity=0.139 Sum_probs=99.9
Q ss_pred cccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCE-EEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
.|..+.-+++ ....++.|.+|++...+-...+.....++.++.|+|+|+. |.++..+-.|.+|.+.+.. ...+..
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~~~~~- 131 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GYLLPH- 131 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eEEecc-
Confidence 3555555443 4466889999999998888888888899999999999955 5566679999999997532 222222
Q ss_pred CCCceeEE-EeeCCCEEEEEcCC------------------------------------CcEEEEEccCCceeeeeccCC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSEN------------------------------------GLISLVGILPNRIIQPIAEHS 122 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d------------------------------------~~i~~~d~~~~~~~~~~~~~~ 122 (203)
....+..+ |+|+|++.+.++.. ..+.+||---.-.+..+ +.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~ 209 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ER 209 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--ee
Confidence 33445555 78888877655431 12334431111111122 22
Q ss_pred CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 123 EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 123 ~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
+-.+..++|+|.+++|++|+.|+.+++.+--+
T Consensus 210 ~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 210 GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred ccceeEEEeccccceEEeeccchhhhhhceee
Confidence 22588999999999999999999998876433
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-11 Score=88.05 Aligned_cols=126 Identities=10% Similarity=0.065 Sum_probs=103.0
Q ss_pred eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC-----ccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEE
Q 028806 32 RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLIS 105 (203)
Q Consensus 32 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~ 105 (203)
.+.+|.+.|..|.|+.++++|++|+.|..+++|.+.. ..+++.....-|...|.|+ |....+++++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 4457889999999999999999999999999999852 1123332222156789999 988899999999999999
Q ss_pred EEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 106 LVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 106 ~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.|+++.+.+..+.... .+.|+.+..+|..+.|++.+.++.|.+||.+..+.
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 99999988877664332 23799999999999999999999999999987763
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=83.72 Aligned_cols=145 Identities=11% Similarity=0.100 Sum_probs=106.6
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEee---cCCccceEEEEEeeC-CCEEEEecCC-CeEEEEEcCCccccce
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKN-GRKVVCGSQS-GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~d-~~i~~wd~~~~~~~~~ 74 (203)
++|...+ +.+|+.+.||.+|+||++....-..+ .....+...++|+++ -+++++-..| ..|.+.|++....++.
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva 281 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA 281 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee
Confidence 4677655 46789999999999999875432222 223567888999984 4677776554 5799999998888899
Q ss_pred eeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCC------ceeeeeccCCCCceEEEEEeCC-CCeEEEEeCCC
Q 028806 75 RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN------RIIQPIAEHSEYPIESLALSHD-RKFLGSISHDS 145 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~ 145 (203)
.+.. |.+.|..+ |.| ....|++++.|..+.+||+.+. .++..+.. +..|..+.|++. ..+++.+. ++
T Consensus 282 ~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--~~EVNqi~Ws~~~~Dwiai~~-~k 357 (364)
T KOG0290|consen 282 RLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--GGEVNQIQWSSSQPDWIAICF-GK 357 (364)
T ss_pred hhhc-CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--cceeeeeeecccCCCEEEEEe-cC
Confidence 9999 99999999 877 5678999999999999999742 13333333 337999999974 46776665 44
Q ss_pred cEEE
Q 028806 146 MLKL 149 (203)
Q Consensus 146 ~i~i 149 (203)
++.+
T Consensus 358 klei 361 (364)
T KOG0290|consen 358 KLEI 361 (364)
T ss_pred eeeE
Confidence 4444
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.5e-10 Score=80.37 Aligned_cols=97 Identities=11% Similarity=0.216 Sum_probs=80.5
Q ss_pred cCCCeEEEEEcCCCeE--EEeecCCccceEEEEEeeCCCEEEEecCCCe-EEEEEcCCccccceeeec-cCCCceeEE-E
Q 028806 14 SGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGYFKDCSDRFVG-LSPNSVDAL-L 88 (203)
Q Consensus 14 ~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~-~~~~~v~~~-~ 88 (203)
-.-|.|+|-++...+. ...+..|.+.|.|++.+.+|..++|++..|+ |++||..+ +..+..+.. .....++++ |
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEe
Confidence 3458899999876544 4678899999999999999999999999886 78999985 556665543 134568999 9
Q ss_pred eeCCCEEEEEcCCCcEEEEEccC
Q 028806 89 KLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 89 ~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
+|+..+|++++..|+|+++.++.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999999875
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=92.62 Aligned_cols=155 Identities=12% Similarity=0.049 Sum_probs=112.9
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCC--------eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028806 2 TFAAD-AMKLLGTSGDGTLSVCNLRKN--------TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
+|.|. -..++.|+..|.|..-+-... +.......|.++|+.+.++|-+..++.++.|.++++|.......+
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 45443 356888999999887443321 112344567899999999998776665555999999998633455
Q ss_pred ceeeeccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCC--ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 73 SDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
+..+.. +...++++ |+|.. ..++++..+|.|.+||+... .++.+...... ....+.|+++|+.|+.|...|.+.
T Consensus 434 l~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~-~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 434 LLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP-ALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred chhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccc-ccceeecCCCCcEEEEecCCCcEE
Confidence 555665 67778999 99965 56777788999999999753 34444444423 677888999999999999999999
Q ss_pred EEeCCCcccC
Q 028806 149 LWDLDDILKG 158 (203)
Q Consensus 149 iwd~~~~~~~ 158 (203)
+|++....-.
T Consensus 512 ~~~l~~~l~~ 521 (555)
T KOG1587|consen 512 ILKLSESLAV 521 (555)
T ss_pred EEEcCchhhc
Confidence 9999754433
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.4e-10 Score=86.82 Aligned_cols=155 Identities=13% Similarity=0.011 Sum_probs=92.3
Q ss_pred cccccCCE--EE-EEcCC--CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC----eEEEEEcCCc-c
Q 028806 2 TFAADAMK--LL-GTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG----TVLLYSWGYF-K 70 (203)
Q Consensus 2 ~~sp~~~~--l~-~~~~d--~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~~wd~~~~-~ 70 (203)
+|||||+. ++ +...+ ..|++.++.+++... +....+.....+|+|||+.|+..+. .| .+..|++... .
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 59999975 32 33333 468888888775432 2223444556899999988876543 22 2334665431 1
Q ss_pred ccceeeeccCCCceeEE-EeeCCCEEEEEc-CCCcEEEE--EccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCC-
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLV--GILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD- 144 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~--d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d- 144 (203)
.....+........... |+|+|+.|+..+ .+|...+| ++.. +.....+..+.. .+....|+|||++|+..+.+
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-NSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC-CccceeECCCCCEEEEEEcCC
Confidence 12223332022233455 999999888765 45654455 4432 223333443323 56788999999998876643
Q ss_pred --CcEEEEeCCCcccC
Q 028806 145 --SMLKLWDLDDILKG 158 (203)
Q Consensus 145 --~~i~iwd~~~~~~~ 158 (203)
..|.+||+.++...
T Consensus 349 g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 349 GVRQICVYDLATGRDY 364 (428)
T ss_pred CCcEEEEEECCCCCeE
Confidence 46999999877654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-10 Score=84.36 Aligned_cols=157 Identities=16% Similarity=0.212 Sum_probs=107.9
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeE----EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceee
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF 76 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~ 76 (203)
..+|.+++||.+..+....++++..... +... .-...-+.+.|..+...+..+..-|.++-+|+-... .....+
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~ 147 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI 147 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh
Confidence 4678899999998888877888765332 2111 122334455555555555555444444444442211 344556
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+ |...+..+ ++||+++|+++..|..|++-.....-.+..+ -+|+. -|..++.-++ ..|++++.|++|++||+.+
T Consensus 148 lG-hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e-FVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 148 LG-HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE-FVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hh-hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh-heeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 67 88899999 9999999999999999998766544444444 45766 5888888776 4589999999999999999
Q ss_pred cccCCCCC
Q 028806 155 ILKGSGNN 162 (203)
Q Consensus 155 ~~~~~~~~ 162 (203)
+.+-+.+.
T Consensus 225 gk~L~t~d 232 (390)
T KOG3914|consen 225 GKLLDTCD 232 (390)
T ss_pred CCcccccc
Confidence 98765543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=83.47 Aligned_cols=152 Identities=12% Similarity=0.041 Sum_probs=111.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcccccee-e
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDR-F 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~ 76 (203)
+.|++.+..++++..+|.+.+-+.....+ ++..+.|...++-..|+. +.+.+++|+.|+.+..||++.++..+.. .
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 35788888899988889998666555433 347788999999999886 4478899999999999999854444332 4
Q ss_pred eccCCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEcc-CCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 028806 77 VGLSPNSVDAL-LK-LDEDRVITGSENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~-~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iwd~ 152 (203)
+. |...|.++ .+ |.+.+|++|+.|-.|++||.+ -++++..-... + .|+.+.++|.-. .|+.++.-+-.+|-+.
T Consensus 207 kv-H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-G-GVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 207 KV-HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-G-GVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ee-eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-c-ceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 55 78888888 44 578899999999999999998 46777655444 3 799999999543 2333333334566655
Q ss_pred CCc
Q 028806 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
...
T Consensus 284 ~~~ 286 (339)
T KOG0280|consen 284 SDK 286 (339)
T ss_pred ccc
Confidence 433
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-09 Score=82.29 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=101.2
Q ss_pred CEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 8 MKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+++ ++-..++.|.|.|..+.+.+..+......-..+.++||++++++++.|+.|.++|+.+ .+.+..+.. ......
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~--G~~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKV--GGNPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE---SSEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEec--CCCcce
Confidence 444 4556789999999999999988886555445678999999999999999999999985 467777765 344566
Q ss_pred E-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCC------CCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028806 87 L-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHS------EYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
+ ++++|+++++++. .+.+.++|.++.+.++.+.... ..++..+.-+|....++..- ..+.|.+.|....
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 7 8999999998874 7899999999999888775431 22577888888887555554 4577877786654
|
... |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-09 Score=85.31 Aligned_cols=148 Identities=13% Similarity=0.161 Sum_probs=123.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 83 (203)
+.-.++-|...|.|.+|+...++....+. .|.++|.++.++.+...|.+++.|..+..|+.. .......+.. ....
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~~~~-~~~~ 146 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRIWKE-QKPL 146 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeeeecc-CCCc
Confidence 44577888889999999999998877775 688999999999999999999999999999987 4567777777 7777
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCC-----CCeEEE-EeCCCcEEEEeCCCcc
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD-----RKFLGS-ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~l~~-~~~d~~i~iwd~~~~~ 156 (203)
+.++ .+|++..+++++. .|++||+++.+.+..+.+|.. +|+++.|.-+ |.++++ ...+.-|.+|-+....
T Consensus 147 ~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred cceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 8888 7999999998874 699999999999999999965 9999999876 666554 4467778999876643
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
..
T Consensus 224 kk 225 (541)
T KOG4547|consen 224 KK 225 (541)
T ss_pred cc
Confidence 33
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-10 Score=91.75 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=114.0
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-ceE---EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELT---SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~---~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
+.+.++.+..++.+-+|+...+.....+..... ... -+.++++.-++++|+.-+.|.+|+.... ..-..+.+ |.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~~l~G-He 175 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPIRLKG-HE 175 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-CCcceecc-cC
Confidence 456778888889999999888776666554322 111 2234556668888999999999999732 22236788 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee-eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+.+..+ ++-+|.++++.+.|+.+++|.+.+++... ..-+|+. .|+.++|.|+ .+++++.|.+.++|+....
T Consensus 176 G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~~ 248 (967)
T KOG0974|consen 176 GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNGT 248 (967)
T ss_pred CceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc-eeEEEEeccc--eeEEeccceEEEEEecccc
Confidence 999999 99999999999999999999999987765 5667855 8999999999 9999999999999965433
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-09 Score=83.50 Aligned_cols=154 Identities=19% Similarity=0.149 Sum_probs=119.3
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecC---CccceEEEEEe------e--------------CCCEEEEecCCCe
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLM------K--------------NGRKVVCGSQSGT 60 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~~~l~~~~~d~~ 60 (203)
.|-+.++|....||.+++|+...++....+.. -.+..++..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45567899999999999999999887766643 12334444443 1 1235667778899
Q ss_pred EEEEEcCCccccceeee-ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE
Q 028806 61 VLLYSWGYFKDCSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 61 i~~wd~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
|.+|++.. ++.-..+. +-|.+.|.++ ++.+-..|.+++.|+.+..|++.+...+..+.+... .+.+++.+||+..|
T Consensus 82 v~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecC-CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCCEE
Confidence 99999964 44444443 2277889988 788889999999999999999999999999988755 78999999999999
Q ss_pred EEEeCCCcEEEEeCCCcccCCCC
Q 028806 139 GSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
++++ +.|++||+.+.+.-..+
T Consensus 160 ~~as--~~ik~~~~~~kevv~~f 180 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITF 180 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEe
Confidence 9886 78999999988755443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-09 Score=77.74 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=102.1
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecCC------ccceEEEEEeeCCCEEEEecCCCeEEEEEcCC-ccccceeeeccCCC
Q 028806 10 LLGTSGDGTLSVCNLRKNTVQTRSEFS------EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FKDCSDRFVGLSPN 82 (203)
Q Consensus 10 l~~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~ 82 (203)
++-+...|.|.++..........+.+- .....++.|++.+..++++..+|.+.+-+... .-+.++.++. |.-
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~ 166 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEF 166 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cce
Confidence 444555677777765543322233221 11245778999999999999999988544321 1123346677 888
Q ss_pred ceeEE-Ee-eCCCEEEEEcCCCcEEEEEcc-CCceeee-eccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCccc
Q 028806 83 SVDAL-LK-LDEDRVITGSENGLISLVGIL-PNRIIQP-IAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 83 ~v~~~-~~-~~~~~l~~~~~d~~i~~~d~~-~~~~~~~-~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
..+.. |+ .+.+.+++|+.|+.+..||++ .++.+.. .+.|+. .|.+|.-+| .+.+|++|+.|..|++||.+++.+
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 88888 74 356789999999999999999 5555544 455644 688888777 568999999999999999997643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-09 Score=85.09 Aligned_cols=147 Identities=17% Similarity=0.164 Sum_probs=94.7
Q ss_pred cccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~ 75 (203)
+|||+|+.|+. ...++ .|++||+.++... .+..+........|+|+++.++..+. ++ .|+++++.. +. ...
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~ 325 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AER 325 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 69999998874 44444 6888899887653 35555555667899999998776553 33 566777653 22 333
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC---CcEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SMLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~ 148 (203)
+.. ........ |+|+|++|+..... + .|.+||+.+++... +... . ......|+|+|+.|+..+.+ ..|.
T Consensus 326 lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~-~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 326 VTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-S-LDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred eec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-C-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 332 22222334 89999999877653 2 58889988876543 3221 1 22356899999998876643 3477
Q ss_pred EEeCCCc
Q 028806 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
++++...
T Consensus 402 ~~~~~g~ 408 (430)
T PRK00178 402 LVSINGR 408 (430)
T ss_pred EEECCCC
Confidence 7777543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-09 Score=84.35 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=96.4
Q ss_pred CcccccCCEEEEE-cCC--CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGT-SGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d--~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~ 74 (203)
++|+|+|+.|+.. +.+ ..|++|++.++... .+..+........|+|+++.|+..+. .+ .|+++++.. ....
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~ 315 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVR 315 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEE
Confidence 3699999977653 433 35889998877543 34444444557789999998876554 33 577777753 2233
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC---cE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i 147 (203)
.+.. +......+ |+|+|++++.++.++ .|.+||+.++... .+... . ......|+|++++|+..+.++ .+
T Consensus 316 ~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~-~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 316 RLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-G-LDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred Eeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEeCCCcEEE
Confidence 4443 44445555 899999999887765 7889998876543 33322 2 245568999999988777543 35
Q ss_pred EEEeCCC
Q 028806 148 KLWDLDD 154 (203)
Q Consensus 148 ~iwd~~~ 154 (203)
++.+...
T Consensus 392 ~~~~~~g 398 (417)
T TIGR02800 392 GLVSTDG 398 (417)
T ss_pred EEEECCC
Confidence 5555443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-08 Score=72.52 Aligned_cols=163 Identities=14% Similarity=0.208 Sum_probs=107.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-------CccceEEEEEeeC------CCEEEEecCCCeEEEEEcC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-------SEEELTSVVLMKN------GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~~------~~~l~~~~~d~~i~~wd~~ 67 (203)
++||||+.+||.+...|+|+++|+....+ ..+.. ....|..+.|.+. ...|++....|.++-|-+.
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence 58999999999999999999999986433 23322 1245667777642 2256666778888877763
Q ss_pred C----ccccceee--eccCCCceeEE-EeeCCCEEEEEcCC----C-------cEEEEEccCCceee-------------
Q 028806 68 Y----FKDCSDRF--VGLSPNSVDAL-LKLDEDRVITGSEN----G-------LISLVGILPNRIIQ------------- 116 (203)
Q Consensus 68 ~----~~~~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~~d----~-------~i~~~d~~~~~~~~------------- 116 (203)
. .......| ...+...|.++ ++|..++|++|+.. + -+..|-+-++.+..
T Consensus 128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~ 207 (282)
T PF15492_consen 128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITAS 207 (282)
T ss_pred cccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccc
Confidence 2 11112222 22135577777 89998888876531 1 25556553221100
Q ss_pred ---------------eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCCCC
Q 028806 117 ---------------PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNIS 164 (203)
Q Consensus 117 ---------------~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 164 (203)
.........|..|.++|||+.||+...+|.|.+|++.+..++..+..+
T Consensus 208 ~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 208 SKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 001111236899999999999999999999999999999988777654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-09 Score=85.06 Aligned_cols=147 Identities=15% Similarity=0.144 Sum_probs=92.0
Q ss_pred cccccCCEEEE-EcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~ 75 (203)
+|+|||+.|+. ...++ .|+++++.+++.. .+..+.......+|+|+++.|+..+. ++ .|+++++.. +. ...
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~ 344 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSR 344 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 69999998865 44555 4888888877653 44445555678899999998876553 34 466666643 22 333
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC-CC--cEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DS--MLK 148 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~ 148 (203)
+.. ........ |+|+|++|+..+.. + .|.++|+.+++... +... . ......|+|+|+.|+..+. ++ .|+
T Consensus 345 Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~-~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 345 LTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-R-LDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred Eec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-C-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 322 22222334 89999999876653 3 46667887776543 3322 1 2234589999998876653 33 367
Q ss_pred EEeCCCc
Q 028806 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
++++...
T Consensus 421 ~~~~~G~ 427 (448)
T PRK04792 421 AVSIDGR 427 (448)
T ss_pred EEECCCC
Confidence 7776433
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-08 Score=77.84 Aligned_cols=144 Identities=11% Similarity=0.093 Sum_probs=116.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCC-eEEEEEcCCccccceeeeccCCCce
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
+|.+++..++ |...|.+...+..++. ++...|.-..+..+++-++.|..|| .+-+||... ..+..+.. .-+.|
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~-~lg~I 404 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEK-DLGNI 404 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeC-Cccce
Confidence 6788888877 7888888766655443 4566788888888888999999999 899999874 45566666 77889
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC----cEEEEeCCCcc
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS----MLKLWDLDDIL 156 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~iwd~~~~~ 156 (203)
.++ .+|+|++++++.....|.++|+.+|.....-+...+ -|..+.|+|+++++|-+--+| .|+++|+.++.
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~-lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG-LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc-eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 999 899999999999999999999999987766555533 699999999999999776554 68999988754
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-08 Score=77.23 Aligned_cols=151 Identities=13% Similarity=0.209 Sum_probs=97.5
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcCCCe--EE--Eeec-CCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccc
Q 028806 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNT--VQ--TRSE-FSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~vw~~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~ 73 (203)
+.|+|+++++++.. ....|++|++.... +. ..+. ......+.++|+|+++++++.. .++.|.+|++......+
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 35899999887753 34679999987643 31 2222 3456689999999999887665 47889999987222111
Q ss_pred ---eeeecc-----CCCceeEE-EeeCCCEEEEEcC-CCcEEEEEcc--CCce--eeeeccCCCCceEEEEEeCCCCeEE
Q 028806 74 ---DRFVGL-----SPNSVDAL-LKLDEDRVITGSE-NGLISLVGIL--PNRI--IQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 74 ---~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~--~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
+.+... .......+ ++|+|++|+++.. ...|.+|++. ++.. +..+... +...+.++++|+|++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEE
Confidence 112110 11245566 8999999998875 5679999983 3433 3333332 22478999999999999
Q ss_pred EEe-CCCcEEEEeC
Q 028806 140 SIS-HDSMLKLWDL 152 (203)
Q Consensus 140 ~~~-~d~~i~iwd~ 152 (203)
++. .++.|.+|++
T Consensus 308 Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 308 VANQDSNTVSVFDI 321 (345)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEecCCCeEEEEEE
Confidence 887 5678999976
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.7e-11 Score=83.23 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=62.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 66 (203)
.+-||++.+|+++.|+.||||+.++.+++..++.|...|.+++|+|+...++.++.|++|.+|++
T Consensus 258 rIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 258 RIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 45689999999999999999999999999999999999999999999999999999999999986
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-08 Score=79.04 Aligned_cols=148 Identities=17% Similarity=0.137 Sum_probs=96.3
Q ss_pred cccccCCE-EEEEcC---CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCC--CeEEEEEcCCccccce
Q 028806 2 TFAADAMK-LLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQS--GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~-l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~~wd~~~~~~~~~ 74 (203)
.|||+|+. ++..+. ...|+++|+.+++...... ..+......|+|||+.++. .+.+ ..|+++++.. ....
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~--g~~~ 270 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT--KTLT 270 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC--CcEE
Confidence 59999985 654433 3579999998886544333 4455667889999987764 3333 4677778753 2344
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCC-C--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC------
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN-G--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------ 144 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------ 144 (203)
.+.. ........ |+|+|+.|+..+.. + .|.++++.+++........ . ....|+|+|++|+.....
T Consensus 271 ~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 271 QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCCCCEEEEEEcCCCcccC
Confidence 4544 33322233 99999988877642 3 5788888877664433222 1 124899999998876643
Q ss_pred ---CcEEEEeCCCccc
Q 028806 145 ---SMLKLWDLDDILK 157 (203)
Q Consensus 145 ---~~i~iwd~~~~~~ 157 (203)
..|.+.|+.++..
T Consensus 346 ~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 346 KNTFNLYLISTNSDYI 361 (419)
T ss_pred CCCcEEEEEECCCCCe
Confidence 3688888877654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=80.11 Aligned_cols=146 Identities=14% Similarity=0.250 Sum_probs=107.3
Q ss_pred EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc----cccceeeeccCCCceeE
Q 028806 11 LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 11 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~v~~ 86 (203)
++.+.+-.|-+-++.++.. +.+. ..+-|.++.|...+++++.|..+|.|..+|++.. +.+.+.+. |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhh
Confidence 3444556677777776632 2333 4566888889888999999999999999999753 33444444 7888888
Q ss_pred E--EeeCCCEEEEEcCCCcEEEEEccCCce---eeeeccCCCC-ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 87 L--LKLDEDRVITGSENGLISLVGILPNRI---IQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 87 ~--~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+ .--++.+|++.+.+|+|++||++.-++ +.++.+|-.. .-.-+...+....+++++.|...+||.++.+..-..
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 8 344788999999999999999987666 7888887432 111234566777888999999999999997765443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.9e-10 Score=95.36 Aligned_cols=154 Identities=13% Similarity=0.059 Sum_probs=118.4
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
+|...+.++|+.||.|++|....++.+..++ .....|+.+.|+.+|+.+..+..||.+.+|.+. ..+....+. |..
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~~s~qc-hnk 2293 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPYTSWQC-HNK 2293 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Ccceecccc-CCc
Confidence 5667788999999999999998877665554 234889999999999999999999999999986 345555566 666
Q ss_pred ceeEE-EeeCCCEEEEEc---CCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 83 SVDAL-LKLDEDRVITGS---ENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~---~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
..... |-. ..+++++ .++.+.+||..- +..-..-.+|.+ .++++++.|..+.|++|+.+|.|++||++..+.
T Consensus 2294 ~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2294 ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 65555 432 4555554 367899999532 221122267755 789999999999999999999999999999988
Q ss_pred CCCCCC
Q 028806 158 GSGNNI 163 (203)
Q Consensus 158 ~~~~~~ 163 (203)
++.+..
T Consensus 2371 ~h~~~~ 2376 (2439)
T KOG1064|consen 2371 RHTFQA 2376 (2439)
T ss_pred HHHhhh
Confidence 877655
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-07 Score=72.76 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=102.4
Q ss_pred CcccccCCEEEEEcC----CCeEEEEEcCC--CeE--EEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSG----DGTLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~----d~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~ 71 (203)
|+++|++++|++... .+.|..|.+.. +.+ +............++++|++++|+++.. .|.+.++++...+.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 468899999988765 57899998875 333 3333323455678999999999998875 89999999975433
Q ss_pred ccee---ee----c----c-CCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCc--e--eeeeccCCCCceEEEEEeC
Q 028806 72 CSDR---FV----G----L-SPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNR--I--IQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 72 ~~~~---~~----~----~-~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~--~--~~~~~~~~~~~i~~i~~~~ 133 (203)
.... +. + + ...-..++ ++|+++++++... ...|.+|++.... . ...+....+...+.++|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 3222 11 0 0 11224455 8999999888654 4569999987654 3 2233333344678999999
Q ss_pred CCCeEEEEe-CCCcEEEEeCC
Q 028806 134 DRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 134 ~~~~l~~~~-~d~~i~iwd~~ 153 (203)
+++++++.. .++.|.++++.
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred CcCEEEEecCCCCcEEEEeec
Confidence 999887766 67889999887
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-10 Score=96.44 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=116.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec---CCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+.|+.+|+....+..||.+.+|.+. +++....+.|........|-. ..+++++ .++.+.+||........-.-+
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~ 2333 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHT 2333 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeee
Confidence 4688999999999999999999987 556667778888888888875 5666654 468999999864332222236
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
. |.+.++++ +-|....|++|+.+|.|.+||++..+.+..++. ++ ...++++++..|.|+||++....
T Consensus 2334 ~-H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2334 C-HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred e-cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccc
Confidence 6 99999999 899999999999999999999998777765543 44 56789999999999999998876
Q ss_pred cCCCCC
Q 028806 157 KGSGNN 162 (203)
Q Consensus 157 ~~~~~~ 162 (203)
..+.++
T Consensus 2402 ll~~~p 2407 (2439)
T KOG1064|consen 2402 LLHTFP 2407 (2439)
T ss_pred hhhcCc
Confidence 555443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-08 Score=84.42 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=102.8
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecC---------------CccceEEEEEeeCCCEEE-EecCCCeEEE
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---------------SEEELTSVVLMKNGRKVV-CGSQSGTVLL 63 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~-~~~~d~~i~~ 63 (203)
|+|+| ++.++++...++.|++|+..++.... +.+ .-.....|+++|++..|+ +-..++.|++
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv 766 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRA 766 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEE
Confidence 46778 45566666778899999988765421 111 012356799999998554 5556789999
Q ss_pred EEcCCcccccee------------eec-------cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-
Q 028806 64 YSWGYFKDCSDR------------FVG-------LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS- 122 (203)
Q Consensus 64 wd~~~~~~~~~~------------~~~-------~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~- 122 (203)
||+.+....+.. +-. ..-.....+ ++++|.++++-..++.|++||..++..........
T Consensus 767 ~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~ 846 (1057)
T PLN02919 767 LDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA 846 (1057)
T ss_pred EECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc
Confidence 998643211100 000 000123455 78999988888889999999998766543221100
Q ss_pred -----------CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 123 -----------EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 123 -----------~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
-.....|+++++|+.+++-+.++.|++||+.+...
T Consensus 847 G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 847 GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 01467899999999888888899999999988654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-09 Score=78.41 Aligned_cols=135 Identities=10% Similarity=0.109 Sum_probs=96.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccccceeeeccC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
.|||+|+++|++++- .+.|-|..+-+..+.+.. -..|..+.|..+..++++ ...++.|.+|++... +-...+.. .
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde-g 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE-G 90 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc-C
Confidence 689999999999875 777888776555443332 356778899988876665 456889999999632 22234444 4
Q ss_pred CCceeEE-EeeCCCEEEE-EcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 81 PNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..++..+ |+|+|+.|+. ..-+-.|.+|.+.+.+.... + |....+..++|+|+|++.+.++
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~-~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-P-HPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-c-ccccCceeEEECCCCceeeeee
Confidence 5667777 9999976665 45588899999988665432 2 2222578899999999987665
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.6e-09 Score=75.64 Aligned_cols=157 Identities=14% Similarity=0.158 Sum_probs=109.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-e--EEEeecCC-----ccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-T--VQTRSEFS-----EEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~-~--~~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
|.++.|+..++++ .|=.|.+|++.-. + .+..++.+ ..-|++..|+|.. +.|+.++..|+|++.|++....
T Consensus 170 IS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 170 ISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 3567777777776 4577999998632 1 22233333 2457888999954 6788888899999999984322
Q ss_pred cce---ee------------eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc-cCCceeeeeccCCC-----------
Q 028806 72 CSD---RF------------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI-LPNRIIQPIAEHSE----------- 123 (203)
Q Consensus 72 ~~~---~~------------~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~-~~~~~~~~~~~~~~----------- 123 (203)
+.. .+ .. -...|..+ |++.|++|++-..- +|++||+ ...+++.+++.|..
T Consensus 249 Cd~hsKlfEepedp~~rsffse-iIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSE-IISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred hcchhhhhccccCCcchhhHHH-HhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 111 11 11 12356677 99999999986654 6999999 45677777766531
Q ss_pred ---CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 124 ---YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 124 ---~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
..-..++|+.++.++++|+....+++|++..+..+..
T Consensus 327 D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 327 DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred cchhheeEEEEcCCcceEecccccceEEEecCCCCcceee
Confidence 1234678999999999999999999999877766543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-07 Score=70.32 Aligned_cols=154 Identities=13% Similarity=0.160 Sum_probs=106.2
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCC--CeEE--EeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc
Q 028806 1 MTFAADAMKLLGTSG---DGTLSVCNLRK--NTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~vw~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~ 72 (203)
|+|+|++++|.++.. .|.|-.|.+.. |++. ........+.+.+++++++++|+++.. .|.|.++-++..+..
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 579999999988754 47777777764 5442 222223344588999999999998875 589999998654433
Q ss_pred cee--eeccCCCc----------eeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeee--ccCCCCceEEEEEeCCCC
Q 028806 73 SDR--FVGLSPNS----------VDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPI--AEHSEYPIESLALSHDRK 136 (203)
Q Consensus 73 ~~~--~~~~~~~~----------v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~--~~~~~~~i~~i~~~~~~~ 136 (203)
... +.. |.+. +... +.|+++++++.+- .-.|.+|++..|.....- ....+..-+.|.|+|+++
T Consensus 125 ~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k 203 (346)
T COG2706 125 QPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK 203 (346)
T ss_pred ccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc
Confidence 221 111 3322 4555 8999999998764 235889999877643221 112233568999999999
Q ss_pred eEEEEe-CCCcEEEEeCCCc
Q 028806 137 FLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 137 ~l~~~~-~d~~i~iwd~~~~ 155 (203)
+....+ .+++|.+|.....
T Consensus 204 ~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEEEEeccCCEEEEEEEcCC
Confidence 987766 6899999998774
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-09 Score=55.00 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=35.6
Q ss_pred CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 112 NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 112 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
++++.++.+|.. +|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999966 899999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=78.16 Aligned_cols=128 Identities=18% Similarity=0.306 Sum_probs=98.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC-----eEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcccc---
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKN-----TVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDC--- 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~--- 72 (203)
.|...++++..|.++|.|.++|++.. .+...+ -|.+.|+++.... ++.+|++++.+|.|.+||++.. ++
T Consensus 259 Qf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~ 336 (425)
T KOG2695|consen 259 QFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKS 336 (425)
T ss_pred HhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccc
Confidence 35556789999999999999999864 233333 4788899998776 7889999999999999999853 34
Q ss_pred ceeeeccCCCceeEE---EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC---CceEEEEEe
Q 028806 73 SDRFVGLSPNSVDAL---LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE---YPIESLALS 132 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~---~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~~i~~i~~~ 132 (203)
+..+.+ |.+...-+ ..+....+++++.|...++|.+..|..+.+++.... ..+.+++|.
T Consensus 337 V~qYeG-HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 337 VMQYEG-HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeeeec-ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 677778 77655555 477788899999999999999999998888765422 134455553
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-09 Score=54.63 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=36.1
Q ss_pred eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEE
Q 028806 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 65 (203)
+++..+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-08 Score=74.03 Aligned_cols=97 Identities=19% Similarity=0.239 Sum_probs=73.4
Q ss_pred EcCCCeEEEEEcC--CCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-Ee
Q 028806 13 TSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LK 89 (203)
Q Consensus 13 ~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~ 89 (203)
|...|.|.+..+. .-.++.++.+|...+.+++|.|....|+++..|..+.+||+.........+.+ |...+..+ .-
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g-h~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG-HNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc-chhhhhhhhhh
Confidence 3334444443332 23456677899999999999999999999999999999999754444455666 77888888 45
Q ss_pred eCCCEEEEEcCCCcEEEEEcc
Q 028806 90 LDEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 90 ~~~~~l~~~~~d~~i~~~d~~ 110 (203)
+--+.+++++.||.|-+|++.
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhheeeeeccCCCeEEEEecc
Confidence 556778899999999999984
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=80.05 Aligned_cols=151 Identities=11% Similarity=0.140 Sum_probs=110.7
Q ss_pred cCCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-
Q 028806 6 DAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
+.+.+++++.|.+|++|.++. ..+..+.+.|..+|.++.|..+.++++++ |+-|.+||.-. +..+..+.
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFi-gr~Laq~~d 822 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFI-GRLLAQMED 822 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccc-cchhHhhhc
Confidence 456788999999999999874 23566778899999999999998887765 78899999753 44443221
Q ss_pred cc---CCCceeEEEeeCCCEEEEE-cCCCcEEEEEccCCceeeeeccC----CCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 78 GL---SPNSVDALLKLDEDRVITG-SENGLISLVGILPNRIIQPIAEH----SEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 78 ~~---~~~~v~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.. ..+.|.++-+-+...++.+ +...+|+++|.+.++....++.- ...-+.+++..|.|++++.+-..|.|.+
T Consensus 823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~ 902 (1034)
T KOG4190|consen 823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI 902 (1034)
T ss_pred CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence 10 1233444434455566666 56789999999987765554322 1235789999999999999999999999
Q ss_pred EeCCCcccCC
Q 028806 150 WDLDDILKGS 159 (203)
Q Consensus 150 wd~~~~~~~~ 159 (203)
.|.+++....
T Consensus 903 LDaR~G~vIN 912 (1034)
T KOG4190|consen 903 LDARNGKVIN 912 (1034)
T ss_pred EecCCCceec
Confidence 9999997554
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-07 Score=72.79 Aligned_cols=134 Identities=16% Similarity=0.107 Sum_probs=102.3
Q ss_pred cccCCEEEEEcCCC-eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 4 AADAMKLLGTSGDG-TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 4 sp~~~~l~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
..+++-++.|..|| .|-|++..+++. ..+...-+.|.++..+++|++++.+.....+.+.|+.+. .....-+. ..+
T Consensus 368 ~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng-nv~~idkS-~~~ 444 (668)
T COG4946 368 QVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG-NVRLIDKS-EYG 444 (668)
T ss_pred ccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC-CeeEeccc-ccc
Confidence 34556778888888 899999998865 445556788999999999999999999999999999863 33333333 566
Q ss_pred ceeEE-EeeCCCEEEEEcCCC----cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 83 SVDAL-LKLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
.|... |+|++++|+.+--+| .|++||+..++........ . .-.+-+|.|++++|..-+
T Consensus 445 lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t-a-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 445 LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT-A-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc-c-cccCcccCCCCcEEEEEe
Confidence 78888 999999999876654 6999999988776544322 2 246789999999987554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-07 Score=73.33 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=91.9
Q ss_pred cccccCCEEEEE-cC--CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGT-SG--DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~ 75 (203)
.|||||+.|+.. +. +..|.++++.++.. ..+..+........|+|||+.|+..+. .+ .|++.|+.. +.. +.
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~r 315 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQ 315 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-Ee
Confidence 589999877654 32 35688888887764 344444433455689999987776553 33 577777753 232 22
Q ss_pred eeccCCCceeEEEeeCCCEEEEEcCC---------CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC--
Q 028806 76 FVGLSPNSVDALLKLDEDRVITGSEN---------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-- 144 (203)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-- 144 (203)
+.. ... ....|+|+|++|+..... ..|.+.|+.++.... +... . ......|+|||+.|+.....
T Consensus 316 lt~-~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~-~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 316 VVF-HGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-G-VNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred Ccc-CCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-C-CcCCeEECCCCCEEEEEEccCC
Confidence 322 111 122489999999876653 368888988776543 4333 2 23458899999988766532
Q ss_pred -CcEEEEeCCCc
Q 028806 145 -SMLKLWDLDDI 155 (203)
Q Consensus 145 -~~i~iwd~~~~ 155 (203)
..|.+.++...
T Consensus 391 ~~~L~~~~l~g~ 402 (419)
T PRK04043 391 QSALGIIRLNYN 402 (419)
T ss_pred cEEEEEEecCCC
Confidence 24677777654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-08 Score=81.41 Aligned_cols=162 Identities=11% Similarity=0.126 Sum_probs=112.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC--e-----EEEeecCC-ccceE-EEEEee--CCCEEEEecCCCeEEEEEcCCcc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKN--T-----VQTRSEFS-EEELT-SVVLMK--NGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~--~-----~~~~~~~~-~~~v~-~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~ 70 (203)
.+.+.+..+|.++.||.|++..+.-. . .......+ .+.+. ..++.. ....|+.+...+.|..||++...
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 34567889999999999999998752 1 11111111 22233 333433 22367888888999999998533
Q ss_pred ccce-eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC---CeEEEEe--C
Q 028806 71 DCSD-RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR---KFLGSIS--H 143 (203)
Q Consensus 71 ~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~--~ 143 (203)
..+. .... ..+.|+++ .+|.+.+++.|+..|.+.+||++-+.++..+......+|..+..+|-. ...++++ .
T Consensus 1185 ~~w~lk~~~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1185 DAWRLKNQL-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred hHHhhhcCc-cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence 2222 1222 45678888 799999999999999999999999888877765545578888877733 4555554 4
Q ss_pred CCcEEEEeCCCcccCCCCCCC
Q 028806 144 DSMLKLWDLDDILKGSGNNIS 164 (203)
Q Consensus 144 d~~i~iwd~~~~~~~~~~~~~ 164 (203)
.+.|.+|++.++..+...+..
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred CCceeeeecccCcceEEEEcC
Confidence 678999999999777666654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-09 Score=82.10 Aligned_cols=149 Identities=16% Similarity=0.212 Sum_probs=111.0
Q ss_pred cccccC-CEEEEEcCCCeEEEEEcCCC------eEEEeec------CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028806 2 TFAADA-MKLLGTSGDGTLSVCNLRKN------TVQTRSE------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 2 ~~sp~~-~~l~~~~~d~~i~vw~~~~~------~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 68 (203)
+..|-. ..+++++.|-.+++||.+.- ..+..+. .....|++++++.++.-|.++-.|-.|++|.-..
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 345544 47889999999999998641 1112221 2245699999998777777777788899994432
Q ss_pred c-c----------ccce-eeeccCCC--ceeEE--EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEe
Q 028806 69 F-K----------DCSD-RFVGLSPN--SVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 69 ~-~----------~~~~-~~~~~~~~--~v~~~--~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~ 132 (203)
. + ..+. .+++ |.+ .|..+ |-|...++++|+.-|.|.||+-.+++.+..+.+... -|.|+.-+
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKG-HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpH 445 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKG-HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPH 445 (559)
T ss_pred ccCCCCCCCcchhhccchhhcc-cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCC
Confidence 1 1 1122 2555 543 36666 589999999999999999999999999988887755 78999999
Q ss_pred CCCCeEEEEeCCCcEEEEeC
Q 028806 133 HDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 133 ~~~~~l~~~~~d~~i~iwd~ 152 (203)
|--..||+++-|..|+||-.
T Consensus 446 P~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred CCCchhhccCCccceeeecC
Confidence 99999999999999999975
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.4e-09 Score=82.37 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=115.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---------------EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEE
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---------------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 65 (203)
++|+....+|++|+.||.++|.-+.+.. .-+++++|...|.-+.|+.+.+.|.++..+|.|.+|-
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence 3688899999999999999999876421 1246789999999999999999999999999999998
Q ss_pred cCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeeccCCCCceEEEEEeCCCCeEEEEeC
Q 028806 66 WGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 143 (203)
+-.+.-+...+..+..+.|.++ |+.+|..|...-.||.|.+=.+...+.- +.+.+. ....+.|++|.+.++.+-.
T Consensus 100 lykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~---~l~hv~ws~D~~~~Lf~~a 176 (1189)
T KOG2041|consen 100 LYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ---LLAHVLWSEDLEQALFKKA 176 (1189)
T ss_pred eecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh---eccceeecccHHHHHhhhc
Confidence 8643333333333356678888 9999999999999999887776543322 222222 3457889999888888888
Q ss_pred CCcEEEEeCCC
Q 028806 144 DSMLKLWDLDD 154 (203)
Q Consensus 144 d~~i~iwd~~~ 154 (203)
.|.+.++|-..
T Consensus 177 nge~hlydnqg 187 (1189)
T KOG2041|consen 177 NGETHLYDNQG 187 (1189)
T ss_pred CCcEEEecccc
Confidence 89999998644
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-07 Score=65.40 Aligned_cols=148 Identities=10% Similarity=-0.020 Sum_probs=98.5
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-ccCCCceeEE-
Q 028806 10 LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GLSPNSVDAL- 87 (203)
Q Consensus 10 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~v~~~- 87 (203)
+..++.|.++++.++..+.....+-...-.+.++.++++++++++.+....|.+|.+....+.+.... ......-.+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 34456667777776654322211111112378899999999999999999999999976554443321 1022222334
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCce-e----eeeccCCCCceEEEEEeCCCC--eEEEEeCCCcEEEEeCCCcccC
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRI-I----QPIAEHSEYPIESLALSHDRK--FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~-~----~~~~~~~~~~i~~i~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|+.....++++..||.+.|||++.... . .+-..| .+++..+.|++-|. +|+..-.-+.+.+.|++++...
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~h-nGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHH-NGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCC-CCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 888889999999999999999986432 1 222334 45899999998664 3444445678999999988654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-06 Score=66.58 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=103.2
Q ss_pred CcccccCCEEEEEc-C-CCeEEEEEcCCCeEEEeecCCcc-------------------------------ceEEE----
Q 028806 1 MTFAADAMKLLGTS-G-DGTLSVCNLRKNTVQTRSEFSEE-------------------------------ELTSV---- 43 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~-d~~i~vw~~~~~~~~~~~~~~~~-------------------------------~v~~~---- 43 (203)
++++|||++|+... . +..|-|+|+.+++.+..+..... .+...
T Consensus 110 ~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 110 TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 36899999988765 3 68899999988776654421100 01111
Q ss_pred ----------EEee-CCCEEEEecCCCeEEEEEcCCc----cccceeeec------cCCCceeEE-EeeCCCEEEEEcC-
Q 028806 44 ----------VLMK-NGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVG------LSPNSVDAL-LKLDEDRVITGSE- 100 (203)
Q Consensus 44 ----------~~~~-~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~------~~~~~v~~~-~~~~~~~l~~~~~- 100 (203)
.+.+ ++++++++.. |+|++.|+... ...+..+.. ........+ ++|+++.+++...
T Consensus 190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 1123 6666666655 89999986421 122222211 012222336 7999999888432
Q ss_pred ---------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCcccCC
Q 028806 101 ---------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 101 ---------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~ 159 (203)
.+.|.++|..+++.+..+... . .+..++++||++ +|++.. .++.|.++|+.++....
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGKRLRKIELG-H-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CccccccCCCCEEEEEECCCCeEEEEEeCC-C-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 247999999999999888765 3 689999999999 777666 67889999998886543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=76.46 Aligned_cols=100 Identities=9% Similarity=0.094 Sum_probs=74.6
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEEeeCCCEEE
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVI 96 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 96 (203)
..+.+|....+.. ..+-+|-+.++.++|+||.++++++..|..|++-.+......-.-+.+ |...|..+.--++..|+
T Consensus 132 ~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG-H~eFVS~isl~~~~~Ll 209 (390)
T KOG3914|consen 132 YSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG-HKEFVSTISLTDNYLLL 209 (390)
T ss_pred eeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc-cHhheeeeeeccCceee
Confidence 3444555444322 344578899999999999999999999999999877632222223456 88888888545566799
Q ss_pred EEcCCCcEEEEEccCCceeeee
Q 028806 97 TGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 97 ~~~~d~~i~~~d~~~~~~~~~~ 118 (203)
+++.|++|++||+.+|+.+.++
T Consensus 210 S~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ecCCCCcEEEEecccCCccccc
Confidence 9999999999999999876554
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-07 Score=75.72 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=114.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC------------CEEEEecCCCeEEEEEcCCc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG------------RKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~i~~wd~~~~ 69 (203)
.|+|.| +||.|+. ..|.|.|..+-+.++.++.|...|+.+.|.|-. -.++++...|.|.+||...
T Consensus 22 Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~- 98 (1062)
T KOG1912|consen 22 DWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL- 98 (1062)
T ss_pred ccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh-
Confidence 577766 6777765 689999999999999999999999999998731 2566777889999999974
Q ss_pred cccceeeeccCCCceeEE-Ee---eCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeC
Q 028806 70 KDCSDRFVGLSPNSVDAL-LK---LDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISH 143 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~---~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~ 143 (203)
...+..+.. +..++..+ |- ++. ..+++......|.+|+..+|+.......... ...|+.+.| +.+++...+.
T Consensus 99 ~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 99 ASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred hhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCCCCcceEEEEcc
Confidence 344445565 67777777 53 344 5666777778899999999999888766644 677899999 6678888787
Q ss_pred CCcEEEEeCCCc
Q 028806 144 DSMLKLWDLDDI 155 (203)
Q Consensus 144 d~~i~iwd~~~~ 155 (203)
.|.+.+-+.-..
T Consensus 177 ~g~vl~~~~l~~ 188 (1062)
T KOG1912|consen 177 KGFVLSCKDLGL 188 (1062)
T ss_pred CceEEEEeccCC
Confidence 888877766443
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=78.07 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=118.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCccccc--ee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKDCS--DR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~--~~ 75 (203)
|-|+..|..|++|+.|..|.+||...+.....+. +|...|....|.|. -..+++++.||.+++=.+...+.+. ..
T Consensus 148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r 227 (559)
T KOG1334|consen 148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR 227 (559)
T ss_pred eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence 3578889999999999999999998877665554 67778888888884 3678999999999998776444332 33
Q ss_pred eeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeec--cCCCC---ceEEEEEeCCCC-eEEEEeCCCcE
Q 028806 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIA--EHSEY---PIESLALSHDRK-FLGSISHDSML 147 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~---~i~~i~~~~~~~-~l~~~~~d~~i 147 (203)
+.. |.+++..+ .-|. ...|++++.|+.+.-+|++.+.+...+. .+... ..+.++.+|-.. .+++++.|.-+
T Consensus 228 l~~-h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~ 306 (559)
T KOG1334|consen 228 LAP-HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFA 306 (559)
T ss_pred ccc-ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhh
Confidence 445 88888888 5554 4568899999999999998876543332 22121 467888999654 78999999999
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++||.+.....
T Consensus 307 RvYD~R~~~~e 317 (559)
T KOG1334|consen 307 RVYDQRRIDKE 317 (559)
T ss_pred hhhcccchhhc
Confidence 99998876554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-06 Score=64.55 Aligned_cols=150 Identities=11% Similarity=0.148 Sum_probs=101.4
Q ss_pred cccccCCEEEEEcC-CCeEEEEEcCCCeEEE----eecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~ 75 (203)
.|.|++++|++... --.|.+|++..+.+.. .+ ......+.|.|+|++++.++.+. +++|.+|........+..
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 47899999988753 3469999998765422 22 34567889999999999887775 899999999753222222
Q ss_pred eec--------cCCCceeEE-EeeCCCEEEEEcCC-CcEEEEEccC--Ccee--eeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 76 FVG--------LSPNSVDAL-LKLDEDRVITGSEN-GLISLVGILP--NRII--QPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 76 ~~~--------~~~~~v~~~-~~~~~~~l~~~~~d-~~i~~~d~~~--~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
+.. ........+ .+|+|++|+++... ..|.++.+.. ++.. .....+ +...+...|+|.+++|+++
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCCCCEEEEE
Confidence 221 012345566 79999999998763 3677777654 3322 112222 2235789999999999988
Q ss_pred eCC-CcEEEEeCC
Q 028806 142 SHD-SMLKLWDLD 153 (203)
Q Consensus 142 ~~d-~~i~iwd~~ 153 (203)
..+ ..|.+|.+.
T Consensus 309 ~q~sd~i~vf~~d 321 (346)
T COG2706 309 NQKSDNITVFERD 321 (346)
T ss_pred ccCCCcEEEEEEc
Confidence 854 568888664
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.8e-08 Score=68.34 Aligned_cols=111 Identities=27% Similarity=0.466 Sum_probs=82.8
Q ss_pred CCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEE--eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCc
Q 028806 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALL--KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP 125 (203)
Q Consensus 48 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 125 (203)
-+..+++|+.+|.|++|.....+.....+.. ....+-+.+ -.++.+..+++.+|.|+.|++..++.+.....|...+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc-ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 3567899999999999998754555444444 455555553 3456688899999999999999888887777775346
Q ss_pred eEEEEEeCCCCeEEEE--eCCCcEEEEeCCCcccCC
Q 028806 126 IESLALSHDRKFLGSI--SHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 126 i~~i~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~ 159 (203)
+.....+..+..|+.+ +.|..++.|++.......
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~ 183 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES 183 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence 6667777777888887 889999999987665443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-08 Score=71.04 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=91.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCe-EEEeecCCccceEEEEEeeCCCEEEEecC-----CCeEEEEEcCCccccceeeeccC
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++.++++..||.+.+++.+.-. ....+........+.++...++.+.++.. -+..+.|+++..+..+.....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-- 178 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-- 178 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc--
Confidence 5678888999999999876511 11111111111222333344555444322 235667776532222211121
Q ss_pred CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCc-eeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCC
Q 028806 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNR-IIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...+.++ -+| +.+.+++|+.+|.+.+||.+... +...+..|.. +|+.+.|+| ++..|++++.||.+-.||..+
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~-~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA-EIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh-hhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2337777 466 45667788889999999998763 4556778854 899999999 668999999999999999885
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=70.04 Aligned_cols=150 Identities=14% Similarity=0.252 Sum_probs=100.1
Q ss_pred CcccccCC--EEEEEcCCCeEEEEEcCCCeEE-----------------------------------Eee-cCCccceEE
Q 028806 1 MTFAADAM--KLLGTSGDGTLSVCNLRKNTVQ-----------------------------------TRS-EFSEEELTS 42 (203)
Q Consensus 1 l~~sp~~~--~l~~~~~d~~i~vw~~~~~~~~-----------------------------------~~~-~~~~~~v~~ 42 (203)
+.|.++++ .++..+.|.+|++|-+...... +.+ ..|...|.+
T Consensus 90 Irw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 90 IRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS 169 (433)
T ss_pred ceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee
Confidence 35666654 4566678899999987531100 000 236677899
Q ss_pred EEEeeCCCEEEEecCCCeEEEEEcCCccccceee--eccC-----CCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCc
Q 028806 43 VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGLS-----PNSVDAL-LKLD-EDRVITGSENGLISLVGILPNR 113 (203)
Q Consensus 43 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~-----~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~ 113 (203)
|.++.|...++++. |=.|.+|.+....+....+ +. + ...|++. |+|. .+.++.++..|.|++.|++...
T Consensus 170 IS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 170 ISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred eeecCccceEeecc-ceeeeeccccccCCceeEEEccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence 99999999888865 6789999986544433332 22 1 1346667 8884 6788888999999999998432
Q ss_pred e----eeeeccCCC-----------CceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 114 I----IQPIAEHSE-----------YPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 114 ~----~~~~~~~~~-----------~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. .+.+....+ ..|..+.|+++|+|+++-.. -+|++||+.
T Consensus 248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 1 111111100 25888999999999998764 479999983
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-08 Score=69.58 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=79.2
Q ss_pred cceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCce
Q 028806 38 EELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 38 ~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
..|.+++-+|. .+.+++|+.+|.+-+||+++...+...+.. |+.+++.+ |+| ++..|++++.||.+..||..+ ..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a-hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~ 257 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA-HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TF 257 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH-hhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ce
Confidence 34888888884 466778889999999999976566667777 99999999 988 578899999999999999753 22
Q ss_pred eeeecc---C-----CC-------------CceEEE-EEeCCCCeEEEEeCCCcEEEEe
Q 028806 115 IQPIAE---H-----SE-------------YPIESL-ALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 115 ~~~~~~---~-----~~-------------~~i~~i-~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+..-.. + .+ ....++ .|.--|..|++|+.-+.|++++
T Consensus 258 l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 258 LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 211000 0 00 011111 2444677888888888888864
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-07 Score=68.04 Aligned_cols=160 Identities=12% Similarity=0.179 Sum_probs=114.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC----CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEE--------------
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL-------------- 63 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~-------------- 63 (203)
.++++...|+.|-..|++.-+.+.. ....+....|..++..+.|+....++++.+.|..+.-
T Consensus 75 ~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 75 EYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred eeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe
Confidence 4567778888888889988887653 2233444567777877777766666666655543221
Q ss_pred -------------------------EEcC-CccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-ee
Q 028806 64 -------------------------YSWG-YFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-II 115 (203)
Q Consensus 64 -------------------------wd~~-~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~-~~ 115 (203)
-.+. +.-..+.++.+ |...+.++ |.|....+++|..|..+.+||+.-++ ..
T Consensus 155 ~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~ 233 (404)
T KOG1409|consen 155 ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA 233 (404)
T ss_pred eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCcEEEeccccCceEEEeccCCccee
Confidence 1000 01123445667 88899999 89999999999999999999987543 33
Q ss_pred eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCCCCC
Q 028806 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSGNNI 163 (203)
Q Consensus 116 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 163 (203)
..+.+|.. .|..+...+--+.|++++.||.|.+|+..........+.
T Consensus 234 ~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl 280 (404)
T KOG1409|consen 234 YELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWL 280 (404)
T ss_pred eeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCcccc
Confidence 45667755 788888888888999999999999999987776665554
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=76.95 Aligned_cols=142 Identities=12% Similarity=0.125 Sum_probs=103.5
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC---------CCeEEEEEcCCcccccee
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~~~~~~~~ 75 (203)
.+++.+.+|...|+|.+-|..+.+.+.++..|.+.|..+ .-.|+.|++++. |..|+|||+++- +.+..
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~P 261 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSP 261 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee--eccCCeEEEeecccccccccccchhhhhhhhhh-hccCC
Confidence 356889999999999999999999999999999988655 457899998875 456889999853 33333
Q ss_pred eeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccC-Cce-eeeeccCC-CCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 76 FVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILP-NRI-IQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~-~~~-~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
+.- +.++ .-+ |+|. ...+++++..|...+.|..+ +.+ ......+. +..+..+.++++++.++.+..+|.|.+|
T Consensus 262 I~~-~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 262 IQF-PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLW 339 (1118)
T ss_pred ccc-ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeee
Confidence 332 3333 333 7775 45677788888898888322 222 22221221 2248999999999999999999999999
Q ss_pred e
Q 028806 151 D 151 (203)
Q Consensus 151 d 151 (203)
-
T Consensus 340 a 340 (1118)
T KOG1275|consen 340 A 340 (1118)
T ss_pred c
Confidence 7
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-06 Score=62.93 Aligned_cols=147 Identities=10% Similarity=0.023 Sum_probs=96.6
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEE-EeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceeeeccCCC--c
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN--S 83 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~ 83 (203)
-+||.|+..|...+|.+.+.+.. .....+...|.-+.-..+ ...+..++.|.++++.++.. +.....+ |.. .
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~-~s~~~~~---h~~~~~ 160 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG-DSNKFAV---HNQNLT 160 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEec-Cccccee---eccccc
Confidence 47888888999999999865432 233333322221111111 22355667888888888863 2222222 332 2
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCC-c-eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPN-R-IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+.++ +++++.++++.+....|.+|.+... + .+.+....+...-.+..|+.....+|++..||.+.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 5666 7999999999999999999988642 2 233233332224578899999999999999999999999887543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=72.76 Aligned_cols=135 Identities=12% Similarity=0.081 Sum_probs=94.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-----------CCeEEEEEcCCc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-----------SGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~~wd~~~~ 69 (203)
+.|||.|.+|++-..-| |.+|--..-..++.+. | ..|..+.|||..++|++-+. ...++|||+.+
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t- 291 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT- 291 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-
Confidence 46999999999987754 8899765544444443 3 34888999999999998543 25799999985
Q ss_pred cccceeeecc-CCCceeEE--EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 70 KDCSDRFVGL-SPNSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 70 ~~~~~~~~~~-~~~~v~~~--~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
+...+.|... ....++.+ ||.++++++.-..+ .|.||+..+..++-.-...-. .|....|+|.++.||--
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~-gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKIS-GIRDFSWSPTSNLLAYW 364 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCc-cccCcccCCCcceEEEE
Confidence 5666655430 23456667 79999999977764 588998665333321111112 58888999998888743
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.2e-06 Score=60.25 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=101.0
Q ss_pred cccccCCEEEEEc-----CCCeEEEEEcC-CCeEEEeecCCccceEEEEEeeCCCEEEEecC-------CC---------
Q 028806 2 TFAADAMKLLGTS-----GDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-------SG--------- 59 (203)
Q Consensus 2 ~~sp~~~~l~~~~-----~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~--------- 59 (203)
.|||||++|++.- ..|.|-|||.. +-+.+..+..+.-....+.+.|++..|+++.. .|
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 5899999998863 35889999998 56777788877777788999999988877532 12
Q ss_pred --eEEEEEcCCcccccee--e--eccCCCceeEE-EeeCCCEEEEEcCCCc-------EEEEEccCCceeeeeccCC---
Q 028806 60 --TVLLYSWGYFKDCSDR--F--VGLSPNSVDAL-LKLDEDRVITGSENGL-------ISLVGILPNRIIQPIAEHS--- 122 (203)
Q Consensus 60 --~i~~wd~~~~~~~~~~--~--~~~~~~~v~~~-~~~~~~~l~~~~~d~~-------i~~~d~~~~~~~~~~~~~~--- 122 (203)
++.+.|..+ +..+.. + .- |...++.+ +.++|..++..-..|. |.++. .+..+..+....
T Consensus 137 ~psL~~ld~~s-G~ll~q~~Lp~~~-~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 137 QPSLVYLDARS-GALLEQVELPPDL-HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQW 212 (305)
T ss_pred CCceEEEecCC-CceeeeeecCccc-cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHH
Confidence 233333332 333333 2 22 44567777 7778776665544332 33333 233233332211
Q ss_pred ---CCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcccCCC
Q 028806 123 ---EYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 123 ---~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~ 160 (203)
..-|-+|++++++.++++.+ ..+.+.+||..++.....
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 12588999999998886666 778899999998876544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-06 Score=66.39 Aligned_cols=148 Identities=12% Similarity=0.132 Sum_probs=100.0
Q ss_pred CcccccCCEEEEEc-----------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec--CCCeEEEEEcC
Q 028806 1 MTFAADAMKLLGTS-----------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~-----------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~ 67 (203)
+.|++.|++|+.-. ...+++++++....+.... .-.++|...+|.|.++.+++.+ ....+.++|++
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccc
Confidence 35788888765421 1356788888744332222 4578999999999888776554 67889999987
Q ss_pred CccccceeeeccCCCceeEEEeeCCCEEEEEcC---CCcEEEEEccCCcee-eeeccCCCCceEEEEEeCCCCeEEEEe-
Q 028806 68 YFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE---NGLISLVGILPNRII-QPIAEHSEYPIESLALSHDRKFLGSIS- 142 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~- 142 (203)
. .....+.. ...-+-+|+|.+++++.++- .|.+-+||....-.. ..+.+. ...-+.|+|+++++.+..
T Consensus 307 ~--Nl~~~~Pe--~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 307 G--NLRFYFPE--QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred c--ceEEecCC--cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEEEecCC
Confidence 3 33333322 22233348999999998765 478999997654333 355544 345678999999988765
Q ss_pred -----CCCcEEEEeCCCcc
Q 028806 143 -----HDSMLKLWDLDDIL 156 (203)
Q Consensus 143 -----~d~~i~iwd~~~~~ 156 (203)
.|..|.|||+....
T Consensus 380 s~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 380 SEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CcccccCcceEEEEecCch
Confidence 37789999986543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-05 Score=69.60 Aligned_cols=154 Identities=14% Similarity=0.052 Sum_probs=96.7
Q ss_pred CcccccCCEEEEEc-CCCeEEEEEcCCCeEEEeecCC-----------------ccceEEEEEee-CCCEEEEecCCCeE
Q 028806 1 MTFAADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEFS-----------------EEELTSVVLMK-NGRKVVCGSQSGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~d~~i 61 (203)
|+++++++.|+++. ..+.|+++|+.++.. .++.+. -...+.++++| ++..+++...++.|
T Consensus 629 Iavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I 707 (1057)
T PLN02919 629 LAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQI 707 (1057)
T ss_pred EEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeE
Confidence 35677777665543 456799999877643 222110 11246799999 55666676778899
Q ss_pred EEEEcCCccccceeeec--------------cCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCCceeeeecc-----
Q 028806 62 LLYSWGYFKDCSDRFVG--------------LSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAE----- 120 (203)
Q Consensus 62 ~~wd~~~~~~~~~~~~~--------------~~~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~----- 120 (203)
++|+.... .+..+.+ ........+ ++|++..|+++ ..++.|++||+.++.......+
T Consensus 708 ~v~d~~~g--~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 708 WEYNISDG--VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred EEEECCCC--eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 99998532 1122211 001234456 89999865554 5578999999987653211100
Q ss_pred --------CC-------CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 121 --------HS-------EYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 121 --------~~-------~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.. ......++++++|..+++-..++.|++||..++..
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v 837 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV 837 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 00 01235889999999888888899999999876543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-06 Score=69.87 Aligned_cols=140 Identities=12% Similarity=0.261 Sum_probs=100.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC-----CCEEEEecCCCeEEEEEcCCccccce-eeecc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN-----GRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~ 79 (203)
+|.++++|+.||+|.|..+-+.+....+.- ..++.+++++|+ .+.+++|+..| +.++.-+-.+.... .+..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~- 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE- 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec-
Confidence 689999999999999999988766555543 467899999997 56899999888 77776432222222 2444
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC-----ceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-----PIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
..++|.++ | .|++|+-++..| |+|||+.+++.+..++..... --..+.|.++.+.+ . |...+|+|..++
T Consensus 159 ~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-I-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-I-GWGDSVKICSIK 233 (846)
T ss_pred CccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-E-ecCCeEEEEEEe
Confidence 67888888 5 578999999988 899999988777665433221 12356787765443 3 344578888887
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-05 Score=57.78 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=88.7
Q ss_pred CcccccCCEEEEEcCC--------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGD--------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d--------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~ 71 (203)
+++.|+|++.++.... |.|..++.. ++...... .-...+.|+|+|+++.|+ +-+..+.|..|++.....
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEecccccc
Confidence 3578899877765443 557777766 55433332 345578999999998776 556688899999864332
Q ss_pred cc---eee---eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEe-CCCCeEEEE
Q 028806 72 CS---DRF---VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (203)
Q Consensus 72 ~~---~~~---~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~ 141 (203)
.+ ..+ .. ..+....+ +..+|++.++....+.|.+++.+ |+.+..+..... .+++++|. ++...|+..
T Consensus 169 ~~~~~~~~~~~~~-~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 169 ELSNRRVFIDFPG-GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp CEEEEEEEEE-SS-SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEE
T ss_pred ceeeeeeEEEcCC-CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEE
Confidence 11 122 11 11235566 78899888887788999999987 888887776634 78999994 565655543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.7e-06 Score=64.66 Aligned_cols=76 Identities=20% Similarity=0.188 Sum_probs=61.2
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
....+.++ ++|+...++.|+.||.|.+||...+..... .. ......++|+|+|..+++|+..|.|.+||+.-....
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka-~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KA-EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--ee-cccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 45567777 899999999999999999999876643322 22 235788999999999999999999999998765544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-07 Score=74.68 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=109.0
Q ss_pred cccccC--CEEEEEcCCCeEEEEEcCC---CeEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCcccccee
Q 028806 2 TFAADA--MKLLGTSGDGTLSVCNLRK---NTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~--~~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
.|||.. .+-++......-.+|++.. ......+-+|...|+.+-|+|+. ..+++++.|..+..||++....++..
T Consensus 74 qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 74 QWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred ecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 466543 2333333445566888763 23445666899999999999966 56789999999999999876666555
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCC-CCeEEEEeCCCcEEEEeC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHD-RKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~iwd~ 152 (203)
+.. -......+ |+.....+++.+....|.+||++-| .++..+++|.. .|..+.|+.- ...+.+++.|++++.||.
T Consensus 154 ~~~-w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 154 TSS-WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-SVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred eec-ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccce-eeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 554 33444556 8776666666677788999999865 56777888754 7888888763 346778889999999997
Q ss_pred CCcc
Q 028806 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
....
T Consensus 232 ~kSt 235 (1081)
T KOG0309|consen 232 SKST 235 (1081)
T ss_pred cccc
Confidence 6543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.2e-06 Score=63.48 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=89.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.++.+|.++.||..+++.+...... ....+. ..+..+++++.+|.++.+|..+. ..+-.... .......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~-~~~~~~s 314 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSG-SELWKNDE-LKYRQLT 314 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCC-cEEEcccc-ccCCccc
Confidence 456777778899999999999877665421 111222 34667888888999999999753 33322211 1111111
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceE-EEEEeCCCCeEEEEeCCCcEEEE
Q 028806 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE-SLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 87 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
.....+..+++++.+|.|+++|..+|+.+..+..+.. .+. +..+. + ..|+.++.||.|+.|
T Consensus 315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~-~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS-GIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-ccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 1122467889999999999999999999988876543 222 22332 3 458888899999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.2e-06 Score=65.72 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=91.0
Q ss_pred cccccCCEEEEEc---CC-CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCCe--EEEEEcCCccccce
Q 028806 2 TFAADAMKLLGTS---GD-GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGT--VLLYSWGYFKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~l~~~~---~d-~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~--i~~wd~~~~~~~~~ 74 (203)
+|+|+++.++... .. ..+.++++.+++....+. ..+.-...+|+|||++|+.+ ..|+. |+++|+. +....
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~--~~~~~ 275 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD--GKNLP 275 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC--CCcce
Confidence 5889998765542 22 458999998875544333 22334457899999887654 45665 5555654 33344
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC-CCc--E
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH-DSM--L 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~--i 147 (203)
.+.. ..+.-..- |+|+|++|+..+. .| .|.+++++.+.. ..+..... .-....|+|+|.+|+..+. +|. |
T Consensus 276 ~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~-~~~~p~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 276 RLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG-GNSNPVWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred eccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC-CCcCccCCCCCCEEEEEeccCCceee
Confidence 4543 22222233 8999999998765 34 366777665544 33333322 2237789999999987774 344 6
Q ss_pred EEEeCCCcc
Q 028806 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
.+.++.+..
T Consensus 353 ~~~~~~~~~ 361 (425)
T COG0823 353 DKNDLASGG 361 (425)
T ss_pred EEeccCCCC
Confidence 666665544
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.2e-06 Score=66.72 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=59.2
Q ss_pred CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
...+.+.+++++|+...|+.|+.||+|.+||.... +..+.. ..-.+..+ |+|+|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG---VTLLAK-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC---eeeeee-ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 35678999999999999999999999999998632 222333 34445666 999999999999999999999854
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-07 Score=73.12 Aligned_cols=152 Identities=11% Similarity=0.097 Sum_probs=102.4
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCe-EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|.|+|+.. .+++++-|..+..||++... +......-......++|+-....+...+....|++||++....++..+++
T Consensus 120 ~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~ 199 (1081)
T KOG0309|consen 120 INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG 199 (1081)
T ss_pred cccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc
Confidence 35777664 67889999999999998753 33333333455678899874444455566778999999988888888898
Q ss_pred cCCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC--CeEEEEeCCCcEEEEeCC
Q 028806 79 LSPNSVDAL-LK-LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR--KFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~iwd~~ 153 (203)
|...+..+ |. -....+++++.||+|++||-............+..+|+--.+.|-| .++.-.-.+..+.+++.+
T Consensus 200 -~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 200 -HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCE 277 (1081)
T ss_pred -cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeecccc
Confidence 88888888 63 3556788999999999999765433333333334577777777743 333322223344444433
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.8e-05 Score=55.21 Aligned_cols=155 Identities=8% Similarity=0.061 Sum_probs=97.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEee---cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++.+++|+.||.. .|..|.|-..+.. ..+... +.....=+.++|+||+..|+.+...|+|++||+. +..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~--g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM--GSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc--cceeEE
Confidence 3567889888775 6688888877653 222222 2333456789999999999999999999999985 233333
Q ss_pred eec------cCCCceeEE-Ee-eC-----CCEEEEEcCCCcEEEEEccCC-----ce--eeeeccCCCCceEEEEEeCCC
Q 028806 76 FVG------LSPNSVDAL-LK-LD-----EDRVITGSENGLISLVGILPN-----RI--IQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 76 ~~~------~~~~~v~~~-~~-~~-----~~~l~~~~~d~~i~~~d~~~~-----~~--~~~~~~~~~~~i~~i~~~~~~ 135 (203)
+.. .....|..+ |- +. ...|++....|.++-|-+..+ +. ...+..|-...|.++.++|.-
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 322 012345555 41 21 235667777888887765322 22 233333433479999999998
Q ss_pred CeEEEEeCC-C----------cEEEEeCCCcccC
Q 028806 136 KFLGSISHD-S----------MLKLWDLDDILKG 158 (203)
Q Consensus 136 ~~l~~~~~d-~----------~i~iwd~~~~~~~ 158 (203)
+.|++|+.. . -+..|.+-+..+-
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY 193 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCc
Confidence 888877631 1 2566666555443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-06 Score=67.49 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=96.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+++++.|+..|.|++.+..... .+...|... ...|.++++|+.||.+.+..+.+. .....+. ...++.+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~-~~~~~~d--f~rpiks 117 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD-DEITQYD--FKRPIKS 117 (846)
T ss_pred cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCC-ccceeEe--cCCccee
Confidence 5688999999999999977543 333334332 567999999999999999988754 3333333 3456777
Q ss_pred E-EeeC-----CCEEEEEcCCCcEEEEEccC-Cceee-eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 87 L-LKLD-----EDRVITGSENGLISLVGILP-NRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 87 ~-~~~~-----~~~l~~~~~d~~i~~~d~~~-~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+ ++|+ .+.+++|+..| +.++.-+- |.... .+... .++|.++.| .|+++|.++.+| |+|||+.+.+.-
T Consensus 118 ial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~-eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l 192 (846)
T KOG2066|consen 118 IALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG-EGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRL 192 (846)
T ss_pred EEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC-ccceEEEEe--cCcEEEEecCCC-cEEEecccccee
Confidence 7 7886 57789999988 77765331 11111 23333 348999999 677999888666 899999877654
Q ss_pred C
Q 028806 159 S 159 (203)
Q Consensus 159 ~ 159 (203)
.
T Consensus 193 ~ 193 (846)
T KOG2066|consen 193 T 193 (846)
T ss_pred e
Confidence 3
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.6e-05 Score=58.82 Aligned_cols=101 Identities=8% Similarity=-0.081 Sum_probs=74.8
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC----------CCeEEEEEcCCccccceeeeccCCC----
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGYFKDCSDRFVGLSPN---- 82 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~~wd~~~~~~~~~~~~~~~~~---- 82 (203)
+.|.|+|..+.+.+.++.....+- .+ ++|+++.|+++.. +..|.+||+.+. ..+..+.. ...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~-p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIEL-PEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cEEeEEcc-CCCchhh
Confidence 899999999999988887543332 34 8999998877655 689999999853 44444432 111
Q ss_pred ---ceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccC
Q 028806 83 ---SVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 83 ---~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~ 121 (203)
....+ ++|+|+++++... +..|.++|+.+++.+.++...
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 11133 7999999998873 688999999999988887654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-05 Score=69.10 Aligned_cols=150 Identities=13% Similarity=0.124 Sum_probs=97.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-------------C--eEE--------EeecC----------------------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-------------N--TVQ--------TRSEF---------------------- 35 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-------------~--~~~--------~~~~~---------------------- 35 (203)
++||||+..|+..+.+++|.+.+-.= + +.+ ..+.+
T Consensus 126 ~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 126 ASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred EEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence 47999999999998888887765320 0 000 01100
Q ss_pred --CccceEEEEEeeCCCEEEEecC---C---CeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcC---CCc
Q 028806 36 --SEEELTSVVLMKNGRKVVCGSQ---S---GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGL 103 (203)
Q Consensus 36 --~~~~v~~~~~~~~~~~l~~~~~---d---~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~ 103 (203)
....-..|+|-.||.+|++.+- . ..++||+-. +....+... -.+--.++ |.|.|++|++... ...
T Consensus 206 ~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 206 LSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred cccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEecccc-CCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 1123457889999999998764 2 578999854 333322222 23333455 8999999998765 345
Q ss_pred EEEEEccCCceeeeecc---CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 104 ISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 104 i~~~d~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|.+|. ++|.....+.. +....|..+.|++++..||....|. |.+|-..+.
T Consensus 283 VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 283 VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 66665 45655444432 2234799999999999999977655 999976654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-05 Score=55.69 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=92.9
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC--
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-- 82 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-- 82 (203)
+++..+++++.++.|+.||..+|+.+...... ..+.... ...+..+++++.++.++.+|..+.......... ...
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~ 110 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT-SSPPA 110 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE--SSCTC
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccccccccceeeeEecccCCcceeeeeccc-ccccc
Confidence 35677888889999999999999988777642 2211112 234556666667889999998764333332232 211
Q ss_pred ceeE-E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC---c------eEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 83 SVDA-L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY---P------IESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 83 ~v~~-~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~------i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.. . ....+..++++..++.|..+|+.+|+.+......... . +..-....++ .++.+..++.+..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence 1111 1 3445888899988999999999999998777654321 1 1122222244 666667677544449
Q ss_pred CCCcc
Q 028806 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
+.++.
T Consensus 190 ~~tg~ 194 (238)
T PF13360_consen 190 LATGE 194 (238)
T ss_dssp TTTTE
T ss_pred CCCCC
Confidence 88887
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.2e-08 Score=78.60 Aligned_cols=145 Identities=16% Similarity=0.160 Sum_probs=102.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+-+.++|+.|+..|.|+++++.+|.......+|.+.|+.+.-+.+|..+++.+.-. -..+|++.......+.|..
T Consensus 1107 ~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred EEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc
Confidence 47888899999999999999999999998888999999999999888998877665433 4678998765555555543
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC---CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
-.++ |+..-..-+.|+..-...+||++++..+.++-... ...-.++.|+|+...++- || .+||++.
T Consensus 1187 -----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1187 -----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRI 1256 (1516)
T ss_pred -----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeecc
Confidence 2344 65544444555555678899999988776632211 113356778887766642 33 3555554
Q ss_pred c
Q 028806 155 I 155 (203)
Q Consensus 155 ~ 155 (203)
.
T Consensus 1257 ~ 1257 (1516)
T KOG1832|consen 1257 P 1257 (1516)
T ss_pred H
Confidence 4
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-06 Score=66.23 Aligned_cols=124 Identities=10% Similarity=0.115 Sum_probs=85.7
Q ss_pred CcccccCCEEE--EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLL--GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~--~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~ 75 (203)
+.|+|+++-++ .|-.=..+.|+|++.. ++..+ .+++-+++-|+|.|++++.++. -|.+.+||+.+ ..++..
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccc
Confidence 46999997554 4455678899998753 44433 4566788999999999998776 47999999985 566666
Q ss_pred eeccCCCceeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCCceEEEEEeC
Q 028806 76 FVGLSPNSVDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~ 133 (203)
+.. .....+-|+|+|.+|++++. |+.++||+. +|..+....-.. ..+.+.|-|
T Consensus 352 ~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s--EL~qv~W~P 410 (566)
T KOG2315|consen 352 FKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS--ELLQVEWRP 410 (566)
T ss_pred ccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH--hHhheeeee
Confidence 654 33333339999999999875 567899996 455553322211 256667765
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.4e-06 Score=62.64 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=62.0
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
|+|||..+ ++..++.+..|.|.|+++...+.....+ ..+++++|.-+. ++++.|..+|.|.+||++....++..+.
T Consensus 199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~ 276 (463)
T KOG1645|consen 199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELV 276 (463)
T ss_pred hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhh
Confidence 57899776 7888999999999999998888877776 789999998765 5677777899999999986555544443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.2e-06 Score=64.11 Aligned_cols=159 Identities=9% Similarity=0.042 Sum_probs=106.3
Q ss_pred cccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCccceEEEEEe-eCC---CEEEE-ecCCCeEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-KNG---RKVVC-GSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~-~~~---~~l~~-~~~d~~i~~wd~~~~~~~~~~ 75 (203)
+.+-++.++++... |..++++|+.+-..+..++... ..-.+.|. ..| ..+++ .-.++.+.++|-.....+...
T Consensus 60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~ 138 (558)
T KOG0882|consen 60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY 138 (558)
T ss_pred hccccceeEeeccCcccceeEEEeeccchhhhccccc-CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce
Confidence 45667777888666 9999999988644432222111 11112222 122 13333 335789999997654434444
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC------CceeeeeccCC--------CCceEEEEEeCCCCeEEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP------NRIIQPIAEHS--------EYPIESLALSHDRKFLGS 140 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~------~~~~~~~~~~~--------~~~i~~i~~~~~~~~l~~ 140 (203)
+...|..+|.++ +.+.+..+++....|.|.-|.... .+....++..+ .....++.|+|++..+.+
T Consensus 139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 554488999999 899999999999999999998762 11111111110 124678999999999999
Q ss_pred EeCCCcEEEEeCCCcccCCCC
Q 028806 141 ISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~~~~~ 161 (203)
-+.|..|+++.+.++...+..
T Consensus 219 l~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 219 LNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cCcccEEEEEEeccchhhhhh
Confidence 999999999999998876553
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.3e-05 Score=55.97 Aligned_cols=139 Identities=17% Similarity=0.102 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCeEEEeecCC--ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEEeeCCC
Q 028806 16 DGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDED 93 (203)
Q Consensus 16 d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 93 (203)
+|+|..||..+++.+...... .....+. ..+++..+++++.++.++.||..+ +..+..+.. .. .+.......+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~-~~~~~~~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL-PG-PISGAPVVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC-SS-CGGSGEEEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec-cc-cccceeeeccc
Confidence 689999999999988877531 1222211 334566777778899999999875 444444432 12 21111233556
Q ss_pred EEEEEcCCCcEEEEEccCCceeeee-ccCCC-C-ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 94 RVITGSENGLISLVGILPNRIIQPI-AEHSE-Y-PIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 94 ~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~-~-~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+++++.++.|..+|..+|+.+... ..... . ....+.....+..++.+..++.|..+|++++...
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEE
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEE
Confidence 6677778889999999999998874 32211 0 1122333334788888888999999999988763
|
... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.3e-06 Score=65.64 Aligned_cols=137 Identities=20% Similarity=0.193 Sum_probs=82.9
Q ss_pred cccccCCEEEEE-cCCCe--EEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeee
Q 028806 2 TFAADAMKLLGT-SGDGT--LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~--i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+|||||++|+.+ ..||. |+++|+.++.. ..+....+.-..-.|+|+|++++..+ ..|.-.||-+...+.....+.
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 699999987655 45554 66667776653 33554444445778999999887655 455545554433344445554
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCC-Cc--EEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSEN-GL--ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d-~~--i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
. ....-... ++|+|.+|+..+.. |. |.++++.++..+..+... . ......|.|+++.++..+
T Consensus 323 ~-~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~-~-~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 323 F-SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST-Y-LNESPSWAPNGRMIMFSS 388 (425)
T ss_pred c-cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc-c-cCCCCCcCCCCceEEEec
Confidence 4 33332233 89999999987753 43 666777666544444332 1 344566777777666444
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.7e-05 Score=63.04 Aligned_cols=147 Identities=10% Similarity=0.078 Sum_probs=97.6
Q ss_pred ccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC------------------------
Q 028806 3 FAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------------------------ 57 (203)
Q Consensus 3 ~sp~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------ 57 (203)
++|||+.+... -..+.+.++|..+.+....+.-. .....++++|++.++++++.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 45677655333 33567888888887776665532 24466778888888776651
Q ss_pred ----------------CCeEEEEEcCC----ccccceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCce-
Q 028806 58 ----------------SGTVLLYSWGY----FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRI- 114 (203)
Q Consensus 58 ----------------d~~i~~wd~~~----~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~- 114 (203)
++.|.+.|..+ .......+. -......+ ++|+|+++++++. +..|.|+|+...+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 23466666653 112233333 23445667 8999999988775 78999999987542
Q ss_pred -----------eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 115 -----------IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 115 -----------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
..+.....+ + ...+|.++|....+...|..|..|++..
T Consensus 357 ~~~~~~~~~~vvaevevGlG-P-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELGLG-P-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeeccCCC-c-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 334443322 3 4678999998888888999999999876
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-05 Score=68.40 Aligned_cols=147 Identities=13% Similarity=0.140 Sum_probs=97.0
Q ss_pred CcccccCCEEEEEcC------CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSG------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~ 71 (203)
|+|-.||+++|+.+- -..++||+-+ |.+..+.+.-.+--.+++|-|.|+++++... ...|.+|.-+ |.
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GL 291 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GL 291 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--Cc
Confidence 468899999988753 2579999955 6665555544444457899999999998764 3456677643 22
Q ss_pred cceeee----ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCCceEEEEEeCCC-CeEEEEeC
Q 028806 72 CSDRFV----GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDR-KFLGSISH 143 (203)
Q Consensus 72 ~~~~~~----~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~ 143 (203)
....|. . ....+..+ |++++..|+....+. |++|-..+.. ..+.+.......+..+.|+|.. ..|...+.
T Consensus 292 rhgeF~l~~~~-~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 292 RHGEFTLRFDP-EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred EeeeEecCCCC-CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEec
Confidence 222222 2 34578888 999999999977665 9999987754 2233333222245569999965 44666666
Q ss_pred CCcEEEEeC
Q 028806 144 DSMLKLWDL 152 (203)
Q Consensus 144 d~~i~iwd~ 152 (203)
++.+..+++
T Consensus 370 ~g~~~~~~~ 378 (928)
T PF04762_consen 370 NGQYEIYDF 378 (928)
T ss_pred CCcEEEEEE
Confidence 677655543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.2e-06 Score=60.95 Aligned_cols=118 Identities=10% Similarity=0.166 Sum_probs=79.1
Q ss_pred CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee--eccCC-----CceeEE-EeeC-CCEEEEEcCCCcEEE
Q 028806 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGLSP-----NSVDAL-LKLD-EDRVITGSENGLISL 106 (203)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~-----~~v~~~-~~~~-~~~l~~~~~d~~i~~ 106 (203)
|...|.++.++.|...++++. +-.|.+|.+.........+ ++ +. ..|++. |+|. .+.+..++..|.|++
T Consensus 171 H~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 171 HPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred ceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 555678888888888777754 6789999886543333322 22 22 246666 8884 567778888999999
Q ss_pred EEccCCc------eeeeeccC---------CCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 107 VGILPNR------IIQPIAEH---------SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~------~~~~~~~~---------~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.|++... .+...... --..|..+.|+++|+++++-.. -+++|||++...
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9998421 11111100 0136888999999999998764 479999987654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.7e-05 Score=54.94 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=96.2
Q ss_pred Ccccc-cCCEEEEEcCCCe-EEEEEcCCCeEEEeecCCccce--EEEEEeeCCCEEEEecC-----CCeEEEEEcCCccc
Q 028806 1 MTFAA-DAMKLLGTSGDGT-LSVCNLRKNTVQTRSEFSEEEL--TSVVLMKNGRKVVCGSQ-----SGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~~~~ 71 (203)
++.+| ....++.+-+-|+ +.+||..+++....+.....+- -.-.|++||++|++.-. .|.|-|||....-.
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 35678 4556677766554 7799999998887776544432 24579999999998644 47899999974344
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcC------------------CCcEEEEEccCCceeeeecc----CCCCceEE
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE------------------NGLISLVGILPNRIIQPIAE----HSEYPIES 128 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~----~~~~~i~~ 128 (203)
.+..+.. +.-....+ +.|+|+.|+++.. +-.+.+.|..+|+.+..... | ...|..
T Consensus 90 ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~-~lSiRH 167 (305)
T PF07433_consen 90 RIGEFPS-HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH-QLSIRH 167 (305)
T ss_pred EEeEecC-CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc-ccceee
Confidence 4555655 44444455 8999988887642 22455667778887766432 4 237999
Q ss_pred EEEeCCCCeEEEEeC
Q 028806 129 LALSHDRKFLGSISH 143 (203)
Q Consensus 129 i~~~~~~~~l~~~~~ 143 (203)
+++.++|..++..-.
T Consensus 168 La~~~~G~V~~a~Q~ 182 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQY 182 (305)
T ss_pred EEecCCCcEEEEEec
Confidence 999999876665443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.3e-05 Score=58.56 Aligned_cols=144 Identities=15% Similarity=0.076 Sum_probs=94.1
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCcee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 85 (203)
.+..+++++.++.|..+|..+|+.+............+. .++..+++++.++.++.+|..+. +.+-.... ...+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG-~~~W~~~~--~~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDG-KELWRAKL--SSEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCC-cEeeeecc--Cceee
Confidence 356778888889999999999988876654332222222 25677888888999999998754 43333322 12222
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCce-----EEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.-.-.+..++.++.++.|+.+|..+|+.+..+..... .+ .+.... + ..++.+..++.+..+|++++..
T Consensus 139 ~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 139 SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCE
Confidence 22111345777788899999999999998877654421 11 111121 2 4677777889999999988754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.7e-05 Score=60.18 Aligned_cols=136 Identities=14% Similarity=0.171 Sum_probs=80.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|.++|+|++++++ .+|...|+.....+... .+.-...+|.+.+ .+++-...++|.++.-- .......+..
T Consensus 38 ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~-~~~~~k~i~~-- 107 (443)
T PF04053_consen 38 LSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNF-KNEVVKSIKL-- 107 (443)
T ss_dssp EEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETT-EE-TT-------
T ss_pred EEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcC-ccccceEEcC--
Confidence 4689999999885 45888888855444332 2334457888854 46666668889997322 1223233433
Q ss_pred CCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 81 PNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 81 ~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...+..+|. |.+|...+.+ .|.+||..+++.+..+... +|..+.|++++.+++..+.+ .+.|++..
T Consensus 108 ~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 108 PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 334566655 7777776555 7999999999999988754 58999999999999988754 67887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.4e-05 Score=62.45 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=66.2
Q ss_pred CCeEEEEEcCC-----CeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccc-----------cceeeec
Q 028806 16 DGTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD-----------CSDRFVG 78 (203)
Q Consensus 16 d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~-----------~~~~~~~ 78 (203)
++.|.|+|..+ ...+..+.. ....+.+.++|||+++++++. +.++.|+|+..... .......
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 35688888776 344444443 455788999999999887765 88999999975322 1222222
Q ss_pred cCCCceeEEEeeCCCEEEEEcCCCcEEEEEccC
Q 028806 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
..+++..-|.++|+...+...|..|..|++..
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 34555555888998777788899999999875
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.5e-05 Score=64.35 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=95.4
Q ss_pred CCEEEEE-cCCCeEEEEEcCCCeEEEeecCCccc-eEEEEEee-----CCCEEEEecCCCeEEEEEcCCcccccee--ee
Q 028806 7 AMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFKDCSDR--FV 77 (203)
Q Consensus 7 ~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~ 77 (203)
.++|+.- .....|+-.|+..|+.+.....+... |..++-.. .....+.|-.+..+..||.+..+..+.. ..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 34578999999999999888876643 55543221 1234556667788999999865432211 11
Q ss_pred cc-CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 78 GL-SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~-~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.+ ......|+......+|++|+.+|.|++||--..+....+++- +.+|..|..+.||++|+..| +..|.++++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGL-GDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCC-CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 10 234456666666678999999999999994322333345554 34999999999999988766 456777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00032 Score=51.29 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=89.7
Q ss_pred ccc-ccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-----CccceEEEEEeeCCCEEEEecCC--------CeEEEEEcC
Q 028806 2 TFA-ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----SEEELTSVVLMKNGRKVVCGSQS--------GTVLLYSWG 67 (203)
Q Consensus 2 ~~s-p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~wd~~ 67 (203)
++. +++.++++ .. +.+.++|..+++....... .....+.+++.|+|++.++.... +.++.++..
T Consensus 46 ~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 46 AFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp EEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred EEEccCCEEEEE-Ec-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 344 45544444 44 4456669888755433322 34568899999999977765443 456666654
Q ss_pred CccccceeeeccCCCceeEE-EeeCCCEEEE-EcCCCcEEEEEccCCce-------eeeeccCCCCceEEEEEeCCCCeE
Q 028806 68 YFKDCSDRFVGLSPNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRI-------IQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~-~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
+. +..+.. .......+ |+|+++.|+. -+..+.|..|++..... ...+.... ...-.+++..+|++.
T Consensus 124 --~~-~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 124 --GK-VTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLW 198 (246)
T ss_dssp --SE-EEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EE
T ss_pred --Ce-EEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEE
Confidence 22 233333 34455677 8999998764 45678899999863221 11122221 136789999999988
Q ss_pred EEEeCCCcEEEEeCCC
Q 028806 139 GSISHDSMLKLWDLDD 154 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~ 154 (203)
++....+.|.+++...
T Consensus 199 va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 199 VADWGGGRIVVFDPDG 214 (246)
T ss_dssp EEEETTTEEEEEETTS
T ss_pred EEEcCCCEEEEECCCc
Confidence 8777889999999763
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-05 Score=62.00 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=79.3
Q ss_pred CccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEc---CCCcEEEEE
Q 028806 36 SEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGS---ENGLISLVG 108 (203)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~---~d~~i~~~d 108 (203)
....|...+|-|.|..+++.+. ..++.+|.+.........+..........+ |+|.|++++.+. ..|.+.+||
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 3567889999999988876543 457888888632211111111022345667 899999988764 578899999
Q ss_pred ccCCceee-eeccCCCCceEEEEEeCCCCeEEEEeC------CCcEEEEeCCCcc
Q 028806 109 ILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISH------DSMLKLWDLDDIL 156 (203)
Q Consensus 109 ~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~------d~~i~iwd~~~~~ 156 (203)
+.-..... ....|. ..+.+.|.|.|+|+++++. |..-++|++....
T Consensus 524 ~~~a~~k~~~~~eh~--~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 524 TDYADLKDTASPEHF--AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred cchhhhhhccCcccc--ccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 87433222 223342 4678999999999998874 4457888876654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-05 Score=58.46 Aligned_cols=153 Identities=17% Similarity=0.149 Sum_probs=102.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCc-----cceEEEEEeeCC-CEEEEecCCCeEEEEEcCCcccc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSE-----EELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~-----~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
.|+.|...++++ .|=.|.+|++.-. -.+..++.|. .-|++..|+|.. +.+..++..|.|++-|++....+
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 466677777775 4567899998632 2233444443 457888899954 56777888999999999843211
Q ss_pred ce---e------------eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCC-----------C
Q 028806 73 SD---R------------FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSE-----------Y 124 (203)
Q Consensus 73 ~~---~------------~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~-----------~ 124 (203)
.. . +.. -...|..+ |+++|++|++-+.. +|++||++.. .++.++..|.. .
T Consensus 258 dn~~klfe~~~D~v~~~ff~e-ivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEE-IVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred cCchhhhhhccCcccchhHHH-HhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 11 0 111 22456667 89999999886654 6999998753 56777755421 1
Q ss_pred ce---EEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 125 PI---ESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 125 ~i---~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+| ..+.|+.+...+++|+..+..-+|-..+...
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~ 371 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGF 371 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeeccccCCC
Confidence 23 3578899999999999998888887555433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.8e-05 Score=64.25 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=91.7
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCC
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN 101 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d 101 (203)
.....++.|+....++++|+.||.+++..+.+.. ..-+++.+ |...|..+ |+.+.+.+-++..+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccccCCC
Confidence 4568899999999999999999999999875321 12245678 88999999 99999999999999
Q ss_pred CcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 102 GLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 102 ~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
|.|-+|-+-.|.-...+ .....+-|.+|+|+.+|+.++..-.||.|.+=.+..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc
Confidence 99999998877644333 222233688999999999999888888886655443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00029 Score=44.28 Aligned_cols=101 Identities=15% Similarity=0.233 Sum_probs=69.7
Q ss_pred eEEEEEee---CC-CEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028806 40 LTSVVLMK---NG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 40 v~~~~~~~---~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 115 (203)
|++|++.. +| +.|++|+.|..|++|+- ...+..+.. ...+.++..-.+..++.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e--~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITE--TDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEec--ccceEEEEEcCCCEEEEEecCCEEEEEeC--ccee
Confidence 56666654 32 68999999999999984 355666653 66788885555578999999999999984 2334
Q ss_pred eeeccCCCCceEEEEEeC-C--C-CeEEEEeCCCcEEE
Q 028806 116 QPIAEHSEYPIESLALSH-D--R-KFLGSISHDSMLKL 149 (203)
Q Consensus 116 ~~~~~~~~~~i~~i~~~~-~--~-~~l~~~~~d~~i~i 149 (203)
..++... .+.++.+.. + | ..|++|-.+|.|-+
T Consensus 75 WRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 4444432 466665543 3 3 36888888888753
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.7e-06 Score=66.91 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=88.3
Q ss_pred EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc------cceeeeccCCCceeEE-EeeCCCEEEEEcCCC
Q 028806 30 QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD------CSDRFVGLSPNSVDAL-LKLDEDRVITGSENG 102 (203)
Q Consensus 30 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~ 102 (203)
+..+.+|...|+.++-..+.+.+++++.|.++++|.++..+. +..++.. |..+|..+ |-.+.++++++ ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeeec--cC
Confidence 456678888888888777888999999999999999975432 3345667 88999999 87777776654 67
Q ss_pred cEEEEEccCCceeeeecc-CCCCceEEEEEeCC--CCeEEEE-eCCCcEEEEeCCCcc
Q 028806 103 LISLVGILPNRIIQPIAE-HSEYPIESLALSHD--RKFLGSI-SHDSMLKLWDLDDIL 156 (203)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~-~~~~~i~~i~~~~~--~~~l~~~-~~d~~i~iwd~~~~~ 156 (203)
.|++||.--++++..+.. ...+.+..+..-|+ ...++.+ +...+++++|.+...
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc
Confidence 899999887777654322 11223444444443 3444444 578899999988764
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.2e-06 Score=65.60 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=69.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceE-EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+.|+|.-.+||++..+|.|-+..+. .+.+.++..+...++ +++|.|||+.+++|-.||+|++.|+............
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s- 103 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS- 103 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc-
Confidence 4689999999999999999998887 677788886777777 9999999999999999999999999864433332222
Q ss_pred CCCceeEE-Ee
Q 028806 80 SPNSVDAL-LK 89 (203)
Q Consensus 80 ~~~~v~~~-~~ 89 (203)
....+.++ |.
T Consensus 104 ~e~~is~~~w~ 114 (665)
T KOG4640|consen 104 VETDISKGIWD 114 (665)
T ss_pred cccchheeecc
Confidence 45566666 54
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00014 Score=60.20 Aligned_cols=154 Identities=15% Similarity=0.188 Sum_probs=98.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-eEEEEEeeCCCEEEEecCCC-----eEEEEEcCCc-----c
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYF-----K 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~-----~ 70 (203)
.|++.+..++.|+.+|.|.+++-. -+.+..++.+... |..+-...+.++|++.+.|. .+++|++... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 478889999999999998888733 2344566666555 44444334446777766553 5899999632 1
Q ss_pred ccc---eeee---ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc---CCceeeeeccCCCCceEEEEEeCCCCeEEE
Q 028806 71 DCS---DRFV---GLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL---PNRIIQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 71 ~~~---~~~~---~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~---~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
.++ ..+. +....++.++ .+.+-..+++|-.+|.|..+.-. ..-....+......+|+.+++..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 1111 0023456666 68888999999999999888522 111122222222348999999999887554
Q ss_pred EeCCCcEEEEeCCCcc
Q 028806 141 ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (203)
+.+-..|.+|.+.+..
T Consensus 189 v~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRT 204 (933)
T ss_pred EEecceeEEEEecCCC
Confidence 5556678999887544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7e-05 Score=62.06 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=60.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 67 (203)
++|+|..-.|+.|-..|.+.+|...+.+.......|..+|..+.|+++|..++++..-|.+.+|.+.
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5799988889999999999999998877777777899999999999999999999999999999775
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00079 Score=48.70 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=94.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
.+++.|+..+.+.-.|..+|.....-.. ..+|.+-+.- -|.+++.|...|.+++.+..+ +.....+.....-.+...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccceE
Confidence 3567788888888999999887754332 3445444433 467899999999999999986 444444443022334444
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
..+++..|+.++.|+..+..|.++..++...+.... -..+-++.|-...|..+...|.+.-
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~-~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG-TFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCc-eeccceecCCCceEEEEeccceEEE
Confidence 788999999999999999999999888877766532 3334566673344444444555433
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00097 Score=52.11 Aligned_cols=153 Identities=13% Similarity=0.094 Sum_probs=106.4
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccce--
Q 028806 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSD-- 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~-- 74 (203)
++++|+++.+..+.. ++++.+.|..++...........+ ..+++.|++..++... .++.+.+.|.... ...+
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~ 198 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGS 198 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccc
Confidence 468899987766544 689999999988887775543344 8899999999777665 6889999997532 2221
Q ss_pred ---eeeccCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEe-CCC
Q 028806 75 ---RFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSIS-HDS 145 (203)
Q Consensus 75 ---~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~-~d~ 145 (203)
.+.. ... ...+ ++|+|.+++..... +.+...|..++..... ...... ....+..+|+|.++.+.. ..+
T Consensus 199 ~~~~~~~-~~~-P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~ 275 (381)
T COG3391 199 VGSLVGV-GTG-PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGG 275 (381)
T ss_pred ccccccc-CCC-CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCC
Confidence 1221 222 3344 79999988776654 5899999888776655 333322 346789999999888774 447
Q ss_pred cEEEEeCCCcccC
Q 028806 146 MLKLWDLDDILKG 158 (203)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (203)
.+.+.|..+....
T Consensus 276 ~V~vid~~~~~v~ 288 (381)
T COG3391 276 TVSVIDGATDRVV 288 (381)
T ss_pred eEEEEeCCCCcee
Confidence 8888887775443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00061 Score=53.46 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=87.1
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.++.+|.+..+|..+++.+....... ...+. ..+..++.++.++.+..+|..+....+..-.. ......+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~s 330 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-LHRLLTA 330 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-CCCcccC
Confidence 4566667788999999999998776543211 11222 24567777888999999998754332221111 1111111
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEE-EEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-LALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 87 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.. ..+.+++.++.+|.|+++|..+|+.+........ .+.+ ..+ .+..|+.++.+|.|+.+++
T Consensus 331 p~-v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~-~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 331 PV-LYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS-GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CE-EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 11 1356788899999999999999998877754322 2322 222 2457888899999998865
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00017 Score=56.86 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=96.0
Q ss_pred cCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC-------EEEEecCCCeEEEEEcCCccc-cceee
Q 028806 6 DAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-------KVVCGSQSGTVLLYSWGYFKD-CSDRF 76 (203)
Q Consensus 6 ~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~~wd~~~~~~-~~~~~ 76 (203)
+.++|+ .+.....|+-.|++.|+.+.....+.. |.-+.+.|+.. .-+.|-.+..|.-||.+..+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444443 445556788899999999888877665 66677777643 223455678899999985443 12211
Q ss_pred ec--c-CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VG--L-SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~--~-~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ + ......|.......+|++|+.+|.|++||--.......+++. +.+|..|..+.+|.+|+..+ +..|.+-++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgL-G~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGL-GDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhccccc-CCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 21 0 123344444556678999999999999996322334446666 44899999999999987665 5566666653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.6e-05 Score=62.39 Aligned_cols=103 Identities=8% Similarity=0.033 Sum_probs=76.0
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe---------cCCCeEEEEEcCCcccc-ceeeec
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG---------SQSGTVLLYSWGYFKDC-SDRFVG 78 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---------~~d~~i~~wd~~~~~~~-~~~~~~ 78 (203)
++|.|...|+|.|+|+.++.....+-.|.+.|.++.|.....++-.+ +.-+.+.+-|++++... .+.+..
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 57889999999999999998888888899999999998665544322 12235667777753211 111222
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
....+|+.+ .+..+.|++..-.+-.+-+||+++
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 145688888 899999999999998899999854
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.3e-05 Score=61.69 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=81.4
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee----ee
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----FV 77 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~----~~ 77 (203)
++..+++++.|+.-|.+++|+-..+.... ...+..+.+..+..+++..+++.|+..|.|.++-+......-.. +.
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d 120 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD 120 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence 45678899999999999999977765432 22233455666778888888999999999999988653222111 12
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
..|...|+++ |++++..+++|...|.|.+-.+.+
T Consensus 121 ~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 121 KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1257789999 999999999999999998876655
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=9e-05 Score=59.94 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=81.0
Q ss_pred cceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028806 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 115 (203)
..|.--++...+.+++.|+.-|.+++|.-.. +.... ...+ ..+.+..+ .++...++++|+..|.|.++.+..+.+.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~-~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHT-GEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCc-hhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 3444445566788999999999999998753 23222 2222 12222233 6889999999999999999988754321
Q ss_pred ---eeeccCC--CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 116 ---QPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 116 ---~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
..-..+. ...|++++|++++..+++|...|+|..-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1112221 34899999999999999999999999988877
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.99 E-value=3e-05 Score=38.22 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=32.8
Q ss_pred eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEE
Q 028806 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 65 (203)
++...+..|...|.++.|++.+..+++++.++.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667888999999999999999999999999995
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.3e-05 Score=38.09 Aligned_cols=38 Identities=39% Similarity=0.788 Sum_probs=31.9
Q ss_pred ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 113 RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 113 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+++..+..|.. .|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTG-PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCC-ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556666744 799999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=60.64 Aligned_cols=139 Identities=18% Similarity=0.228 Sum_probs=100.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.|+....+..+|+.+.+..+...-..+.|.-+. .+++.+.+|...|+|.+-|.++ -+.++.+.. |.+.+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~a-Hs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS-FETIHTFDA-HSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCc-Cceeeeeec-cccceee
Confidence 34566666667788889888776555443333454443 4678999999999999999974 578889998 8887765
Q ss_pred EEeeCCCEEEEEcC---------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeC
Q 028806 87 LLKLDEDRVITGSE---------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 87 ~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~ 152 (203)
+ +-.|+.|++++. |..|+|||++..+.+..+..+.+ + .-+.|+|.- ..+++++..|...+-|.
T Consensus 223 f-Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~-P-~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 223 F-DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG-P-QFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred e-eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC-c-hhhhhcccccceEEEEecccceeeccc
Confidence 5 668889998864 45689999998887777766644 2 346777743 45677777777777773
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.4e-06 Score=68.10 Aligned_cols=150 Identities=16% Similarity=0.228 Sum_probs=91.7
Q ss_pred Ccccc-cCCEEEEEc----CCCeEEEEEcCCC--eEE--EeecC-CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028806 1 MTFAA-DAMKLLGTS----GDGTLSVCNLRKN--TVQ--TRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 1 l~~sp-~~~~l~~~~----~d~~i~vw~~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 70 (203)
++|++ |.+.||+|- .|..+.|||+.++ .+. ..+.. ......+++|..+.+++.+|.....+.++|++...
T Consensus 108 lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~ 187 (783)
T KOG1008|consen 108 LAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL 187 (783)
T ss_pred cccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh
Confidence 35655 455666663 3567999999875 111 11211 23345688898888888898888899999997322
Q ss_pred ccceeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEE-ccCC-ceeeeeccCCC---CceEEEEEeCCCC-eEEEEe
Q 028806 71 DCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVG-ILPN-RIIQPIAEHSE---YPIESLALSHDRK-FLGSIS 142 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d-~~~~-~~~~~~~~~~~---~~i~~i~~~~~~~-~l~~~~ 142 (203)
.....+ .+..+..+ ..| .++++++-. +|.|.+|| .+.- .++.++...+. ..+..++|.|... .+++..
T Consensus 188 ~~~~sv---nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~ 263 (783)
T KOG1008|consen 188 DSVSSV---NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS 263 (783)
T ss_pred hhhhhh---hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc
Confidence 222222 23344455 566 566666544 99999999 3332 23333322211 1488999999653 444554
Q ss_pred -CCCcEEEEeCCC
Q 028806 143 -HDSMLKLWDLDD 154 (203)
Q Consensus 143 -~d~~i~iwd~~~ 154 (203)
..++|+++|+..
T Consensus 264 RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 264 RDSITIRLYDICV 276 (783)
T ss_pred cCcceEEEecccc
Confidence 567899998754
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.2e-05 Score=59.49 Aligned_cols=94 Identities=12% Similarity=0.096 Sum_probs=72.8
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCcee-EE-EeeCCCEEEEEcCCCcEEEEEccCCce
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD-AL-LKLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~-~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
...+..+.|+|.-..+|++..+|.+.++.+. ..+ +.++.. +..+++ ++ |.|+|+.|++|-.||+|++.|++.+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qR-lwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQR-LWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cce-eEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 3457789999999999999999999998886 333 344553 444555 88 999999999999999999999999887
Q ss_pred eeeeccCCCCceEEEEEeC
Q 028806 115 IQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 115 ~~~~~~~~~~~i~~i~~~~ 133 (203)
+.........+|.++.|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7663322233788888864
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0024 Score=53.27 Aligned_cols=151 Identities=14% Similarity=0.183 Sum_probs=95.2
Q ss_pred CEEEEEcCCC-----eEEEEEcCC------CeEE---Eee--cC--CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028806 8 MKLLGTSGDG-----TLSVCNLRK------NTVQ---TRS--EF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 8 ~~l~~~~~d~-----~i~vw~~~~------~~~~---~~~--~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
++|++.+.|+ .|+||++.. +.++ +.+ .. ...++.+++.+.+-..+|+|-.+|.|.++.-.-.
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 5677765553 589999863 2233 111 11 3567899999999889999999999999853211
Q ss_pred c--ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEeCCC
Q 028806 70 K--DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 70 ~--~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
. .....+......+|+.+ +..++..++.+..-..|.+|.+....+... +..+ +.+..|..+++....+++++ +.
T Consensus 158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAG-SE 235 (933)
T ss_pred hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEec-Cc
Confidence 1 11111111146789999 666666644444445688999874333333 4444 55788888887655455544 45
Q ss_pred cEEEEeCCCcccCCC
Q 028806 146 MLKLWDLDDILKGSG 160 (203)
Q Consensus 146 ~i~iwd~~~~~~~~~ 160 (203)
.+.+|+.....+.-.
T Consensus 236 ~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 236 FLYFYDSDGRGPCFA 250 (933)
T ss_pred eEEEEcCCCcceeee
Confidence 799999876655433
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.002 Score=50.61 Aligned_cols=142 Identities=12% Similarity=0.041 Sum_probs=88.8
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc----------ceE-EEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE----------ELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~----------~v~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
+..+++++.++.|.-+|..+|+.+........ .+. .+.. .+..++.++.++.++.+|..+....+ .
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W-~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAW-Q 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcc-c
Confidence 55777778889999999999988876643220 000 1111 35567778889999999987644333 3
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCce-----EEEEEeCCCCeEEEEeCCCcEEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
... . ..+.+- .- .+..++.++.++.|..+|..+|+.+........ .+ .+... .+..++.++.++.+..
T Consensus 146 ~~~-~-~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v--~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 146 TKV-A-GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPAT--AFGGAIVGGDNGRVSA 219 (394)
T ss_pred ccC-C-CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEE--ECCEEEEEcCCCEEEE
Confidence 332 2 222221 11 245677788889999999999998877754311 10 11111 1234666777888888
Q ss_pred EeCCCccc
Q 028806 150 WDLDDILK 157 (203)
Q Consensus 150 wd~~~~~~ 157 (203)
+|..++..
T Consensus 220 ~d~~~G~~ 227 (394)
T PRK11138 220 VLMEQGQL 227 (394)
T ss_pred EEccCChh
Confidence 88877654
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00053 Score=53.02 Aligned_cols=92 Identities=9% Similarity=0.069 Sum_probs=58.6
Q ss_pred cccCCEEEEEc---------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028806 4 AADAMKLLGTS---------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 4 sp~~~~l~~~~---------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
|||+++++... ..+.+.|+|+.+++...... ....+....|+|+|+.++... ++.|++++.... . ..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~-~-~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG-Q-ET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS-E-EE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCC-C-eE
Confidence 78999887742 24678999999986654333 356788899999999988875 578999987532 1 11
Q ss_pred eeeccC-----------------CCceeEE-EeeCCCEEEEEc
Q 028806 75 RFVGLS-----------------PNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 75 ~~~~~~-----------------~~~v~~~-~~~~~~~l~~~~ 99 (203)
.+..-. -..-..+ |+|++++|+...
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 121100 1123456 899999888653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.2e-05 Score=56.48 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=67.2
Q ss_pred ceeeeccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEE
Q 028806 73 SDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKL 149 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i 149 (203)
.+.+.. +...|..+ |+|..+ ++..++.+..|+|.|+++......+..+ . .+++++|.-+.. +|+.|-..|.|.|
T Consensus 186 sq~lp~-~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~-~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 186 SQILPG-EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-N-QIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hhcccc-cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-C-CceeeeeccCCcceeEEeccCceEEE
Confidence 334455 67788999 898777 6778899999999999999999888888 4 799999998764 5667778999999
Q ss_pred EeCCCccc
Q 028806 150 WDLDDILK 157 (203)
Q Consensus 150 wd~~~~~~ 157 (203)
||++....
T Consensus 263 yD~R~~~~ 270 (463)
T KOG1645|consen 263 YDMRQPEG 270 (463)
T ss_pred EEccCCCc
Confidence 99987653
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0062 Score=47.67 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=100.2
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCccccceeee
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~ 77 (203)
++++.++.+ +....++.|.+.|..+......+.... ....++++|++..++++.. ++++.+.|..+. .......
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEEEEe
Confidence 456777744 444456899999987766665554322 5678999999988877665 678888887643 3333333
Q ss_pred ccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceee-----eeccCCCCceEEEEEeCCCCeEEEEeCC---CcE
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQ-----PIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~-----~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i 147 (203)
. ...+ ..+ +.|+|+.++... .++.|.+.|........ ..... . .-..+.++|++.++.+.... +.+
T Consensus 158 v-G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~-~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 158 V-GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-T-GPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred c-CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-C-CCceEEECCCCCEEEEEeccCCCceE
Confidence 3 3344 445 899999777766 67889999976654442 12222 1 34678999999977665543 588
Q ss_pred EEEeCCCcc
Q 028806 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
...|..+..
T Consensus 234 ~~id~~~~~ 242 (381)
T COG3391 234 LKIDTATGN 242 (381)
T ss_pred EEEeCCCce
Confidence 888887754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0038 Score=53.93 Aligned_cols=149 Identities=11% Similarity=0.130 Sum_probs=92.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC----c---------
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY----F--------- 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~----~--------- 69 (203)
|..+.+.|+.+...|.|.+-|..+.... ....-...|.+++|+||+..++..+..+++.+-.-.. .
T Consensus 76 fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~ 154 (1265)
T KOG1920|consen 76 FLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDER 154 (1265)
T ss_pred EecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccccc
Confidence 4556777888888899998887765432 2223356799999999999998888877776643210 0
Q ss_pred ---------cccceeeec---------------------cCCCceeEE-EeeCCCEEEEE-----cCCCcEEEEEccCCc
Q 028806 70 ---------KDCSDRFVG---------------------LSPNSVDAL-LKLDEDRVITG-----SENGLISLVGILPNR 113 (203)
Q Consensus 70 ---------~~~~~~~~~---------------------~~~~~v~~~-~~~~~~~l~~~-----~~d~~i~~~d~~~~~ 113 (203)
++.-..|.+ .+... ..+ |--+|.++++. ...+.|+|||-+ |.
T Consensus 155 ~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~-~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~ 232 (1265)
T KOG1920|consen 155 KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHK-TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA 232 (1265)
T ss_pred ccccceecccccceeeecchhhhcccccccccccccchhhccCC-ceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch
Confidence 011111211 00111 235 78899998873 233789999966 43
Q ss_pred eeeeeccCCCCceEEEEEeCCCCeEEEEe---CCCcEEEEeCCCc
Q 028806 114 IIQPIAEHSEYPIESLALSHDRKFLGSIS---HDSMLKLWDLDDI 155 (203)
Q Consensus 114 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~iwd~~~~ 155 (203)
.-.+- ....+-=.+++|-|.|..+++.. .|+.|.+|.-.+.
T Consensus 233 Lns~s-e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 233 LNSTS-EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred hhccc-CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence 22211 11111235799999999988765 4567999875433
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.011 Score=45.08 Aligned_cols=141 Identities=12% Similarity=0.104 Sum_probs=84.5
Q ss_pred CCEEEEEcC----------CCeEEEEEcCCC----eEEEee--cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028806 7 AMKLLGTSG----------DGTLSVCNLRKN----TVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 7 ~~~l~~~~~----------d~~i~vw~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 70 (203)
..+|++|+. .|.|.++.+... ..+..+ ....++|++++-- ++. |+++. .+.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 356776642 288999999873 122211 2346778888755 444 44443 4789999997543
Q ss_pred ccceeeeccCCC--ceeEEEeeCCCEEEEEcCCCcEEEEEccC-Cceeeee-ccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 71 DCSDRFVGLSPN--SVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 71 ~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
.+..... ... .+.++ ...+++|++|.....+.++.... ...+..+ +......++++.+-+++..++.+..+|.
T Consensus 119 -~l~~~~~-~~~~~~i~sl-~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 119 -TLLKKAF-YDSPFYITSL-SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp -SEEEEEE-E-BSSSEEEE-EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred -cchhhhe-ecceEEEEEE-eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 1222222 222 34444 44567999999888888875543 2323222 2222236888888877678899999999
Q ss_pred EEEEeCC
Q 028806 147 LKLWDLD 153 (203)
Q Consensus 147 i~iwd~~ 153 (203)
|.++...
T Consensus 196 l~~l~~~ 202 (321)
T PF03178_consen 196 LFVLRYN 202 (321)
T ss_dssp EEEEEE-
T ss_pred EEEEEEC
Confidence 9999874
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0016 Score=53.62 Aligned_cols=144 Identities=14% Similarity=0.057 Sum_probs=79.9
Q ss_pred cccccCCEEEEEc------CCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC------------CeE
Q 028806 2 TFAADAMKLLGTS------GDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS------------GTV 61 (203)
Q Consensus 2 ~~sp~~~~l~~~~------~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i 61 (203)
++||+|+.+++.. .|. .|.+++... .. ..+... .....-.|+|+|..+++.... +.+
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql 432 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL 432 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence 5789999887665 233 555556432 22 223222 237788999998877766432 223
Q ss_pred EEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEE---EEccCCceee----eeccCCCCceEEEEEeC
Q 028806 62 LLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL---VGILPNRIIQ----PIAEHSEYPIESLALSH 133 (203)
Q Consensus 62 ~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~---~d~~~~~~~~----~~~~~~~~~i~~i~~~~ 133 (203)
.+.++.. +.... . ....|..+ |+|||..++... ++.|++ -....|.... .+.......+.++.|..
T Consensus 433 ~~~~vd~-ge~~~---~-~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 433 ARTPVDA-SAVAS---R-VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred EEEeccC-chhhh---c-cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 3333321 11111 2 34568889 999999988766 467766 3333443111 12221122357899999
Q ss_pred CCCeEEEEeCCCc--EEEEeCCCc
Q 028806 134 DRKFLGSISHDSM--LKLWDLDDI 155 (203)
Q Consensus 134 ~~~~l~~~~~d~~--i~iwd~~~~ 155 (203)
++.++ ++..++. +...++...
T Consensus 507 ~~~L~-V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 507 GDSLV-VGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred CCEEE-EEecCCCCceEEEecCCc
Confidence 98855 4444333 444445433
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00057 Score=53.53 Aligned_cols=125 Identities=19% Similarity=0.146 Sum_probs=88.3
Q ss_pred EEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEc
Q 028806 21 VCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 21 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~ 99 (203)
+|+..+......+....-++..+.|+|.|.+|++.... .|.+|.-.... .+..+. ...|..+ |+|.+++|.+=.
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~-~l~~~~---~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA-KLVRFR---HPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchh-heeeee---cCCceecccCcccceeeeec
Confidence 44444433333444455678899999999999987765 48999876443 343443 3467888 999999998754
Q ss_pred CC---------------CcEEEEEccCCceeeeeccCCCCc--eE-EEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 100 EN---------------GLISLVGILPNRIIQPIAEHSEYP--IE-SLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 100 ~d---------------~~i~~~d~~~~~~~~~~~~~~~~~--i~-~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.. ..+.+||+.+|.++..+..... + .+ -+.|+.+..|+|-. ....++|+++
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q-~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ-PYLGWPVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCC-cccccceeeeeecchhhhhh-ccCeEEEEec
Confidence 33 2489999999999988876644 3 34 57899998887754 3457999996
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.3e-05 Score=61.98 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=92.5
Q ss_pred EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCC-C-cEEEE
Q 028806 31 TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN-G-LISLV 107 (203)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~-~i~~~ 107 (203)
..+..+....+|++|+.+.++|++|+..|.|++|++.+ +.......+ |..+++.+ -+.+|..+++.+.- . ...+|
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccc-cccccccccccCCcceeeeeccccCchHHHh
Confidence 45566778899999999999999999999999999974 667777888 99999988 67788887765543 2 46789
Q ss_pred EccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 108 GILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 108 d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
++.+ +....++. .-.++.|+..-+.-+.|+......+||+.+..+-+.
T Consensus 1173 ~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred ccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 9764 33444443 346788887665556666556789999988865543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0058 Score=46.20 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=81.7
Q ss_pred ccccCCEEEEEcC-----------CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCC-c
Q 028806 3 FAADAMKLLGTSG-----------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGY-F 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~-----------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~-~ 69 (203)
..|+|.+.+.... -|.|+.++. .+..+..+..+-...+.|+|+||++.|+.+.. .+.|..|++.. .
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 4566766655433 133444443 45555555555566788999999988887765 47888887752 1
Q ss_pred ccc----ceeeeccCCCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCCCceEEEEEe-CCCCeEEEEe
Q 028806 70 KDC----SDRFVGLSPNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSIS 142 (203)
Q Consensus 70 ~~~----~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~ 142 (203)
... ...+.....+..-.+ ...+|.+.+++...| .|.+|+.. |+.+..+..... .+++++|- |+.+.|+..+
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 111 011111022333333 566777776555554 89999987 888888877743 57788885 4455554443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.009 Score=47.23 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=83.3
Q ss_pred cccccCCEEEEE-cCC----CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC-----------CeEEEEE
Q 028806 2 TFAADAMKLLGT-SGD----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----------GTVLLYS 65 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~~wd 65 (203)
.+||+|++||.+ +.. ..|+++|+.+++.+...-. ......+.|.++++.|+....+ ..|++|.
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 579999998875 222 4599999999977643211 1222349999998887665432 2477788
Q ss_pred cCCcccc-ceeeeccCCCce--eEE-EeeCCCEEEEEcC---C-CcEEEEEccCC----ceeeeeccCCCCceEEEEEeC
Q 028806 66 WGYFKDC-SDRFVGLSPNSV--DAL-LKLDEDRVITGSE---N-GLISLVGILPN----RIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 66 ~~~~~~~-~~~~~~~~~~~v--~~~-~~~~~~~l~~~~~---d-~~i~~~d~~~~----~~~~~~~~~~~~~i~~i~~~~ 133 (203)
+.+.... ...+.. ..... ..+ .++++++++.... + ..+.+.++..+ .....+..... .+....-+.
T Consensus 209 ~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~-~~~~~v~~~ 286 (414)
T PF02897_consen 209 LGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED-GVEYYVDHH 286 (414)
T ss_dssp TTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS-S-EEEEEEE
T ss_pred CCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC-ceEEEEEcc
Confidence 7653222 223333 33333 344 6899999875433 2 35778887764 22233333223 333333233
Q ss_pred CCCeEEEEe---CCCcEEEEeCCCccc
Q 028806 134 DRKFLGSIS---HDSMLKLWDLDDILK 157 (203)
Q Consensus 134 ~~~~l~~~~---~d~~i~iwd~~~~~~ 157 (203)
.+.+++... ..+.|...++.....
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred CCEEEEeeCCCCCCcEEEEeccccccc
Confidence 444444332 345677777766554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0022 Score=55.35 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=70.9
Q ss_pred CcccccCCEEEEE-----cCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec---CCCeEEEEEcCCc--c
Q 028806 1 MTFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYF--K 70 (203)
Q Consensus 1 l~~sp~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~--~ 70 (203)
|.|--||+++|+. .....|+|||-. +.+-..-......-.+++|-|.|..+++.. .++.|.+|.-+.. +
T Consensus 201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 3577789988873 233789999976 444333333344456799999999988754 3557888875411 1
Q ss_pred ccceeeeccCCCceeEE-EeeCCCEEEE---EcCCCcEEEEEccCC
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLDEDRVIT---GSENGLISLVGILPN 112 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~---~~~d~~i~~~d~~~~ 112 (203)
...-.+.. ....+..+ |+.++..|+. ......|++|-+.+.
T Consensus 280 ~f~l~~p~-de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 280 EFVLPFPL-DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccCCcc-cccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 11112222 33447888 9999998887 344455999987654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0058 Score=44.42 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
|.+++.|...|.+++.+..+|...+.+.....-=......+++..+..++.|++++..|..+. .++-..+. ......+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~-~cVykskc-gG~~f~s 140 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKC-GGGTFVS 140 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc-ceEEeccc-CCceecc
Confidence 567888999999999999999777666543322223345678999999999999999998753 44444333 2211111
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 87 L-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
. ..|-...|+.+...|.|.--...+
T Consensus 141 P~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 141 PVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred ceecCCCceEEEEeccceEEEEccCC
Confidence 1 355334455555555554444333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00035 Score=58.18 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=80.9
Q ss_pred EEEEEeeCCCEEEEecC----CCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028806 41 TSVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 41 ~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 115 (203)
+-..|+|...+|++++. .|.|.||-= + +++-.... .+-.++++ |+|..-.|+.|-.-|.+.+|...+.+..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-t-GEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-T-GEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-C-CCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 34579998888877653 578888843 2 33333222 12234556 8999888888888999999998776665
Q ss_pred eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 116 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.....| ..+|..+.|+|+|..|+++..-|.+.+|....
T Consensus 95 tv~~th-~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 95 TVVETH-PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeccCC-CCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 555566 45899999999999999999999999998763
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.022 Score=42.37 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=87.8
Q ss_pred cccCCEEEEEcCCCeEEEEEcCC-CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce--------
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-------- 74 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-------- 74 (203)
...++.|+.|+.+| |.+++... ........ ...|..+...|.-+.|++-+ |+.++++++........
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 34678899998888 99999833 22222222 23499999999877777665 49999999864221110
Q ss_pred ------eeeccCCCceeEEEe----eCCCEEEEEcCCCcEEEEEccCC-----ceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 75 ------RFVGLSPNSVDALLK----LDEDRVITGSENGLISLVGILPN-----RIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 75 ------~~~~~~~~~v~~~~~----~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
.+. ....+.. |. +.+...++......|.+|..... +....+... + .+.+++|. ++.|+
T Consensus 80 ~~~~~~~~~--~~~~v~~-f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~-~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 80 SRSLPTKLP--ETKGVSF-FAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-D-PPSSIAFL--GNKIC 152 (275)
T ss_pred ccccccccc--ccCCeeE-EeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-C-CcEEEEEe--CCEEE
Confidence 111 1111111 23 34444444555558888877542 455566555 3 68899998 55677
Q ss_pred EEeCCCcEEEEeCCCcccC
Q 028806 140 SISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~ 158 (203)
.+. .+...+.|+.++...
T Consensus 153 v~~-~~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 153 VGT-SKGFYLIDLNTGSPS 170 (275)
T ss_pred EEe-CCceEEEecCCCCce
Confidence 766 445888898866544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00083 Score=52.00 Aligned_cols=146 Identities=13% Similarity=0.093 Sum_probs=100.9
Q ss_pred cCCEEEEEcCCCeEEEEEcCC--C-eEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeecc-C
Q 028806 6 DAMKLLGTSGDGTLSVCNLRK--N-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL-S 80 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~-~ 80 (203)
..+++.+++.||.++.|--.. + +.+..+..|-..|.+++.+-++.++.+.+. |..++++|+.+. ..+..++.. -
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~-DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF-DMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc-chhhhcccccC
Confidence 456889999999999998543 2 344555678888999999999999999777 999999999742 333222220 1
Q ss_pred CCceeEEEeeCC----CEEEEEcCCCcEEEEEccCCc-e-eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 81 PNSVDALLKLDE----DRVITGSENGLISLVGILPNR-I-IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~~~~~~----~~l~~~~~d~~i~~~d~~~~~-~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.+.+.. +...| ...++.-.++.+.++|-.... + ...-..|.. +|.++.++|-+..+++....|.|.-|....
T Consensus 98 Pg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s-PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 98 PGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS-PVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred CCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC-ceEEEEeeccccceeeccccceeEeecCCC
Confidence 222222 22233 222233457899999976433 2 233344544 999999999999999999999999999874
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.027 Score=44.86 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=73.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc--------c--ccceee
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--------K--DCSDRF 76 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--------~--~~~~~~ 76 (203)
|.+|+..+. +.|.+||+.+++.+..+... +|..+.|++++.+++..+.+ .+++++.... + .....+
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 555666554 48999999999999988753 48999999999999988755 6778776421 0 022222
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.. -...|.+. |.-+ .++..+.. .|+. +-.|+.- ++..- +.+++-+.+.|..+.+.....++.|..+.+..
T Consensus 193 ~E-~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~l-d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 193 HE-ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHL-DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EE-E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE--SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EE-ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEc-CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 21 13455555 5444 45544444 5554 4444332 22222 23677788888878888888888888887643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.013 Score=36.92 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=61.3
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL 87 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
+.|++|+.|..|++|.-. ..+..+.. ...|+++.-... ..|+.+..+|+|-+|+-. .+.++ .+. ...+.++
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR-iKS--K~~~~~~ 86 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR-IKS--KNQVTSM 86 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee-ecc--CCCeEEE
Confidence 579999999999999844 45566654 456777776654 678999999999999863 24443 333 3345666
Q ss_pred --EeeCC---CEEEEEcCCCcEE
Q 028806 88 --LKLDE---DRVITGSENGLIS 105 (203)
Q Consensus 88 --~~~~~---~~l~~~~~d~~i~ 105 (203)
+..++ .-|++|-.+|.|-
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeEE
Confidence 33332 3578888888763
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0086 Score=49.44 Aligned_cols=104 Identities=20% Similarity=0.174 Sum_probs=61.4
Q ss_pred cceEEEEEeeCCCEEEEec------CCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCC---------
Q 028806 38 EELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN--------- 101 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d--------- 101 (203)
..+.+.+++|+|..++... .+..-.+|-....+.. ..+.. .. ..... |+|+|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3577889999999887654 2443344433222333 33332 22 35555 89998887776532
Q ss_pred ---CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 102 ---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 102 ---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
+.+.+.++..+.... .. ...|..+.|+|||..|+... ++.|++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RV-PGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---cc-CCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 223333443333322 11 22699999999999888766 467766
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.025 Score=43.18 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=79.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCe-EEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cCCCc
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNT-VQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNS 83 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~ 83 (203)
+.+|+++.. +.|.+|++...+ ...... .....+.++... ++++++|.....+.++.+......+..+.. .....
T Consensus 98 ~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 98 NGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp TTEEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred CCEEEEeec-CEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 334555444 789999998776 443222 123355555544 669999998888888866532332333322 02334
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccC-------Cc--eeeeeccCCCCceEEE---EEeC--CCC------eEEEEe
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILP-------NR--IIQPIAEHSEYPIESL---ALSH--DRK------FLGSIS 142 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-------~~--~~~~~~~~~~~~i~~i---~~~~--~~~------~l~~~~ 142 (203)
+.++ +-++++.++.+..+|.|.++.... +. ......-|.+..|+++ .+.| .+. .++.++
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T 254 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGT 254 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEE
T ss_pred EEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEe
Confidence 5666 555667999999999999987752 22 2222223333367777 5555 222 377888
Q ss_pred CCCcEEEE
Q 028806 143 HDSMLKLW 150 (203)
Q Consensus 143 ~d~~i~iw 150 (203)
.+|.|.+.
T Consensus 255 ~~G~Ig~l 262 (321)
T PF03178_consen 255 VDGSIGVL 262 (321)
T ss_dssp TTS-EEEE
T ss_pred cCCEEEEE
Confidence 89998743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.016 Score=47.76 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=71.8
Q ss_pred cceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-eeeeccCCCceeEE-E--eeCCCEEEEEcCCCcEEEEEcc---
Q 028806 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS-DRFVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGIL--- 110 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~v~~~-~--~~~~~~l~~~~~d~~i~~~d~~--- 110 (203)
..+.-+.-+.-++..++-+....+.|||........ ..+ . ....|..+ | .|+++.+++.+-.+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~-~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-S-EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-c-CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344444445545555555556789999997432111 122 3 46788999 6 6899999999999999988642
Q ss_pred --C----Cceeee--eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 111 --P----NRIIQP--IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 111 --~----~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. ..++.. +..++..+|....|.++|..++.+ ++.+.|++-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 112222 344444589999999999776654 357888763
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0023 Score=54.69 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC--C
Q 028806 48 NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE--Y 124 (203)
Q Consensus 48 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~ 124 (203)
.+..++.|+..|.+...|+...-.+...-.. ..++|+++ |+.+|..++.|-.+|.|.+||+..+++++.+..+.. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~-v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNER-VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCc-cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3456788888899998888632111122222 46789999 899999999999999999999999988888766532 1
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.|..+.+..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3444455556667777777775 5543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.02 Score=42.30 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=87.9
Q ss_pred cccccCCEEEEEcC-----CCeEEEEEcCCC-eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEE-----------
Q 028806 2 TFAADAMKLLGTSG-----DGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY----------- 64 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-----d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w----------- 64 (203)
.|||||.+|+..-. -|.|-|||.+.+ +.+..+..|.-....+.|.+||+.++.+.. -|..-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh
Confidence 48999999887643 378999998854 445677777777889999999999987643 23322
Q ss_pred ---------EcCCcccccee--eec-cCCCceeEE-EeeCCCEEEEEcCCCc-----EEEEEccCCceeeeeccCCC---
Q 028806 65 ---------SWGYFKDCSDR--FVG-LSPNSVDAL-LKLDEDRVITGSENGL-----ISLVGILPNRIIQPIAEHSE--- 123 (203)
Q Consensus 65 ---------d~~~~~~~~~~--~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~~~--- 123 (203)
|..+ +..+++ +.. .+...++.+ ..++|+.++-+-..|. -.+=-...++++.-+....+
T Consensus 198 sMePSlvlld~at-G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~ 276 (366)
T COG3490 198 SMEPSLVLLDAAT-GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA 276 (366)
T ss_pred hcCccEEEEeccc-cchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence 2111 122111 110 022334555 4555555444332221 11111223444433332211
Q ss_pred ---CceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcccCC
Q 028806 124 ---YPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 124 ---~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~ 159 (203)
.-|-+|+.+.+..+++..+ ..+...+||..++....
T Consensus 277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 1366778776666655444 56678999999887553
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.049 Score=44.17 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=87.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-----eE-EEEEeeCCCEEEEec---------CCCeEEEEEcCCcccc
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-----LT-SVVLMKNGRKVVCGS---------QSGTVLLYSWGYFKDC 72 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~l~~~~---------~d~~i~~wd~~~~~~~ 72 (203)
..++.++.++.|+.+|..+++.+......... +. ...+. + ..++.++ .++.++.+|..+....
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57777888999999999999988776543221 11 11222 2 3444443 3578888888754333
Q ss_pred ceeeeccCC-------------------CceeE-E-EeeCCCEEEEEcCCC------------------cEEEEEccCCc
Q 028806 73 SDRFVGLSP-------------------NSVDA-L-LKLDEDRVITGSENG------------------LISLVGILPNR 113 (203)
Q Consensus 73 ~~~~~~~~~-------------------~~v~~-~-~~~~~~~l~~~~~d~------------------~i~~~d~~~~~ 113 (203)
. .+..... ..+++ . +.+.+..++.++.++ .|.-+|+.+|+
T Consensus 189 W-~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 189 W-RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred e-EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 3 2221000 11111 1 344567777777654 68889999999
Q ss_pred eeeeeccCCCCceE------EEEEe----CCCC---eEEEEeCCCcEEEEeCCCcccC
Q 028806 114 IIQPIAEHSEYPIE------SLALS----HDRK---FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 114 ~~~~~~~~~~~~i~------~i~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+..++.... ... ...+. -++. .++.++.+|.+..+|.++++..
T Consensus 268 ~~W~~~~~~~-~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~ 324 (488)
T cd00216 268 VKWFYQTTPH-DLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLI 324 (488)
T ss_pred EEEEeeCCCC-CCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEe
Confidence 8877643211 111 11111 1333 5677788999999999998754
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=8.6e-05 Score=59.60 Aligned_cols=140 Identities=12% Similarity=0.216 Sum_probs=91.4
Q ss_pred CEEEEEcCCCeEEEEEcCCCeE--EEeecCCccceEEEEEee-CCCEEEEecC----CCeEEEEEcCCcc-ccce--eee
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMK-NGRKVVCGSQ----SGTVLLYSWGYFK-DCSD--RFV 77 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----d~~i~~wd~~~~~-~~~~--~~~ 77 (203)
-.++.|..+|.|.+-..+...- .....++..+.++++|++ |.+.|+.|-. +..+.+||+...- .+.. .|.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 4567888889999888775322 234456677899999998 5667776643 5689999996420 1111 111
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEe
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd 151 (203)
+.......++ |-.+.+++++|...+.+.++|++.. .....+.. . .+..+...| .+.|+++-. |+.|.+||
T Consensus 151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k-~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--K-YVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--h-hcccceecCCCCCceeccc-cCceeecc
Confidence 1011223344 6677888889999999999999832 22222222 2 356677788 777887766 99999999
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.049 Score=42.83 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=86.5
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEe--ecC------CccceEEEEEee-----CC---CEEEEecCCCeEEEEEcCC-
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTR--SEF------SEEELTSVVLMK-----NG---RKVVCGSQSGTVLLYSWGY- 68 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~---~~l~~~~~d~~i~~wd~~~- 68 (203)
|-.++|.|..+|.+.|.|++.+..+.. +.. ....++++.|.. |+ -.+++|...|.+.+|.+.-
T Consensus 96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 456899999999999999998877654 222 234678888873 22 3678888899999998852
Q ss_pred c-cccce----eeeccCCCceeEE--EeeC-C-------------------CEEEEEcCCCcEEEEEccCCceeeeeccC
Q 028806 69 F-KDCSD----RFVGLSPNSVDAL--LKLD-E-------------------DRVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 69 ~-~~~~~----~~~~~~~~~v~~~--~~~~-~-------------------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 121 (203)
. +.... .... +..++..+ ++.+ | +.++..+.+..++++.+.+.+........
T Consensus 176 ~~g~f~v~~~~~~~~-~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~ 254 (395)
T PF08596_consen 176 SNGRFSVQFAGATTN-HDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDD 254 (395)
T ss_dssp GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS
T ss_pred CCCceEEEEeecccc-CCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecc
Confidence 1 11111 1112 44555555 3221 1 23445555667999998776655444322
Q ss_pred CCCceEEEEEe-----CCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 122 SEYPIESLALS-----HDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 122 ~~~~i~~i~~~-----~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
...+..+.+- ..+..|++-..+|.|++|.+...++...
T Consensus 255 -~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 255 -PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKS 297 (395)
T ss_dssp --EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEE
T ss_pred -ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhc
Confidence 1133344553 3556788888999999999988876543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.036 Score=44.91 Aligned_cols=149 Identities=13% Similarity=0.042 Sum_probs=87.9
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc------ceE--EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE------ELT--SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+..++.++.++.|.-+|..+++.+........ .+. .+... ++..++.++.++.|+.+|..+. +.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG-~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETG-KQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCC-CEeeeecC
Confidence 34566777789999999999988776643221 010 11111 2267778888999999999764 44333332
Q ss_pred cCCCc--eeEE-Eee--CCCEEEEEc---------CCCcEEEEEccCCceeeeeccCCC-------------------Cc
Q 028806 79 LSPNS--VDAL-LKL--DEDRVITGS---------ENGLISLVGILPNRIIQPIAEHSE-------------------YP 125 (203)
Q Consensus 79 ~~~~~--v~~~-~~~--~~~~l~~~~---------~d~~i~~~d~~~~~~~~~~~~~~~-------------------~~ 125 (203)
.... -..+ .+| .+..++.++ .++.|..+|..+|+.+..+..... ..
T Consensus 139 -~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 -NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred -CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 1110 0111 111 124455543 357888999999998877644211 01
Q ss_pred e-EEEEEeCCCCeEEEEeCCC------------------cEEEEeCCCcccC
Q 028806 126 I-ESLALSHDRKFLGSISHDS------------------MLKLWDLDDILKG 158 (203)
Q Consensus 126 i-~~i~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~ 158 (203)
+ ...++.+.+..++.++.++ .|.-+|+.+++..
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 1 1345555566777776554 6888888887754
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.002 Score=54.95 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=68.0
Q ss_pred CEEEEEcCCCeEEEEEcCCC-eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 8 MKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
..++.|+..|.+-..|..++ .....-+...++|++++|+.+|..++.|-.+|.|.+||+.. +..++.+.. +..+...
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e-~~ap~t~ 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITE-HGAPVTG 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-Ccceeeeee-cCCccce
Confidence 35677777788877776653 11112223457899999999999999999999999999975 466777766 6666665
Q ss_pred E----EeeCCCEEEEEcCCCc
Q 028806 87 L----LKLDEDRVITGSENGL 103 (203)
Q Consensus 87 ~----~~~~~~~l~~~~~d~~ 103 (203)
+ +..++..++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 5 3455667888877776
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.069 Score=39.16 Aligned_cols=150 Identities=12% Similarity=0.117 Sum_probs=86.7
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-----
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS----- 73 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~----- 73 (203)
|+|+|+.+ ++++....+.|..++.. |+.+..+.-. ..-.-.|++..++.++++.-.++.+.++++......+
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~ 105 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADV 105 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhc
Confidence 57899866 55667778888888864 6777666532 3457788888888777777678999999984322211
Q ss_pred eeee--c--cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---Cceeee-----ec---cCCCCceEEEEEeCCCC-
Q 028806 74 DRFV--G--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---NRIIQP-----IA---EHSEYPIESLALSHDRK- 136 (203)
Q Consensus 74 ~~~~--~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~-----~~---~~~~~~i~~i~~~~~~~- 136 (203)
..+. . .+...+-.+ |.|.++.++.+-......+|.+.. ...+.. +. .. ...+.+++++|...
T Consensus 106 ~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~S~l~~~p~t~~ 184 (248)
T PF06977_consen 106 QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF-VRDLSGLSYDPRTGH 184 (248)
T ss_dssp EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT---SS---EEEEETTTTE
T ss_pred eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce-eccccceEEcCCCCe
Confidence 1121 1 023346777 899888888888777777777654 211111 11 11 12578899999654
Q ss_pred eEEEEeCCCcEEEEeC
Q 028806 137 FLGSISHDSMLKLWDL 152 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~ 152 (203)
+++....+..|..+|.
T Consensus 185 lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 185 LLILSDESRLLLELDR 200 (248)
T ss_dssp EEEEETTTTEEEEE-T
T ss_pred EEEEECCCCeEEEECC
Confidence 4555556777777774
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.033 Score=45.16 Aligned_cols=113 Identities=9% Similarity=0.027 Sum_probs=67.8
Q ss_pred cceEEEEEeeCC----CEEEEecCCCeEEEEEcCCccc----cceeeec-----cCCCceeEEEeeCCCEEEEEcCCCcE
Q 028806 38 EELTSVVLMKNG----RKVVCGSQSGTVLLYSWGYFKD----CSDRFVG-----LSPNSVDALLKLDEDRVITGSENGLI 104 (203)
Q Consensus 38 ~~v~~~~~~~~~----~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~-----~~~~~v~~~~~~~~~~l~~~~~d~~i 104 (203)
..|..+.|.|-+ ..|...-....|.||.+..... .+..-.. ...-+-.|+|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 458899999842 2344445567899999853211 1111111 00123345699998888876655443
Q ss_pred EEEEccCC--ceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 105 SLVGILPN--RIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 105 ~~~d~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
.+++++.. +...-+... + -|.|.+|.+||+.|+++- ..=+-++||-
T Consensus 137 V~~sV~~d~srVkaDi~~~-G-~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTS-G-LIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EeeeeeeCCceEEEeccCC-c-eEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 46666543 233334443 3 799999999998877654 3335688874
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.06 Score=41.76 Aligned_cols=137 Identities=10% Similarity=0.035 Sum_probs=71.1
Q ss_pred cccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+|.++|+.|+.++. ...+++.|+.+++..+.-.+.........++|+.+.++.......|+..|+.+. +....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~-e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL-EERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC-cEEEEEEC
Confidence 47889976655543 456888888888776544433233335667788888776655568888888753 22223332
Q ss_pred cCCCceeEE-E--eeCCCEEEEEc----------------------CCCcEEEEEccCCceeeeeccCCCCceEEEEEeC
Q 028806 79 LSPNSVDAL-L--KLDEDRVITGS----------------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 79 ~~~~~v~~~-~--~~~~~~l~~~~----------------------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~ 133 (203)
....+... | +.++..++-.- -.+.|...|+.+|+....+... . .+..+.|+|
T Consensus 121 -p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~-wlgH~~fsP 197 (386)
T PF14583_consen 121 -PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-D-WLGHVQFSP 197 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S--EEEEEEET
T ss_pred -CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-c-cccCcccCC
Confidence 33333222 3 44555544221 1234666778888776666654 3 688899999
Q ss_pred CCCeEEEEe
Q 028806 134 DRKFLGSIS 142 (203)
Q Consensus 134 ~~~~l~~~~ 142 (203)
....+++-|
T Consensus 198 ~dp~li~fC 206 (386)
T PF14583_consen 198 TDPTLIMFC 206 (386)
T ss_dssp TEEEEEEEE
T ss_pred CCCCEEEEe
Confidence 766555544
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.066 Score=42.40 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.9
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
++..|+.||++++||.-..+|.+.+...
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 7999999999999999888899887753
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.093 Score=40.03 Aligned_cols=151 Identities=11% Similarity=0.051 Sum_probs=88.8
Q ss_pred cccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCCcc-c------eEEEEEeeCCCEEEEec--CCCeEE
Q 028806 2 TFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFSEE-E------LTSVVLMKNGRKVVCGS--QSGTVL 62 (203)
Q Consensus 2 ~~sp~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~-~------v~~~~~~~~~~~l~~~~--~d~~i~ 62 (203)
..||+++.++++. +.-.|.+||..+-.+...+.-... + ...++++.+++++++.. -...|.
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVt 121 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVT 121 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEE
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEE
Confidence 4689999887653 234689999999877765543222 1 12356677777776643 345677
Q ss_pred EEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcCCCcEEEEEcc-CCceeee----eccCCCCceEEEEEeCCCCe
Q 028806 63 LYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGIL-PNRIIQP----IAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 63 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~----~~~~~~~~i~~i~~~~~~~~ 137 (203)
|.|+.. ++.+..+.. ..+..++-.....+.+.|.||.+....+. .|+.... +....+..+..-++...+..
T Consensus 122 VVDl~~-~kvv~ei~~---PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 122 VVDLAA-KKVVGEIDT---PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEETTT-TEEEEEEEG---TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred EEECCC-CceeeeecC---CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence 888763 444444432 22333332123568889999999988887 4554422 11111212223455556666
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 028806 138 LGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (203)
++..+.+|.|+-.|+....
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEBTTSEEEEEEETTSS
T ss_pred EEEEecCCEEEEEeccCCc
Confidence 6667889999888886654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0033 Score=44.60 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCeEEEEEcCCC-eEEEeecCCccceEE-EEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC-Cc
Q 028806 7 AMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTS-VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-NS 83 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~ 83 (203)
+..+++|+.+|.|.+|..... ............|-+ +.-..++.+..+++.+|.|+.|.+.. ...+...-. |. .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~-h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQ-HNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecc-ccCCC
Confidence 356788899999999987631 111111111122222 22233556788899999999999863 333333222 33 22
Q ss_pred eeEE-EeeCCCEEEEE--cCCCcEEEEEc
Q 028806 84 VDAL-LKLDEDRVITG--SENGLISLVGI 109 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~--~~d~~i~~~d~ 109 (203)
...+ ....+..+.++ +.+..++.|++
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcch
Confidence 2222 33344444444 44444555544
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.01 Score=50.25 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=67.6
Q ss_pred EEEEEcCCCeEEEEEcCCC--eEEEe-ec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCc
Q 028806 9 KLLGTSGDGTLSVCNLRKN--TVQTR-SE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS 83 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~--~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 83 (203)
..+.|-.++.|..||.+-. +++.. .. .......|++-+.+| +||+|+.+|.|++||-. +......+.+ -..+
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~-lG~p 620 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPG-LGDP 620 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCC-CCCC
Confidence 3456667788999998752 23321 11 123456777766665 78899999999999953 4455556666 6789
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~ 109 (203)
|..+ .+.+|++|++.|... |.|++.
T Consensus 621 I~~iDvt~DGkwilaTc~ty-LlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTADGKWILATCKTY-LLLIDT 646 (794)
T ss_pred eeEEEecCCCcEEEEeecce-EEEEEE
Confidence 9999 899999998877664 445554
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.084 Score=39.23 Aligned_cols=154 Identities=10% Similarity=0.140 Sum_probs=96.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce----e
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD----R 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~----~ 75 (203)
++|+|+.+.|++......-.|+-...|+.+.++.-. -.-...|.+..++.++++--.++.++++.+......+. .
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~ 170 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQK 170 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceE
Confidence 579999999988877777777776778887776521 12244577777888877777788888887754322111 1
Q ss_pred e-----eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-e--eeeeccCCC------CceEEEEEeCCC-CeEE
Q 028806 76 F-----VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR-I--IQPIAEHSE------YPIESLALSHDR-KFLG 139 (203)
Q Consensus 76 ~-----~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~-~--~~~~~~~~~------~~i~~i~~~~~~-~~l~ 139 (203)
+ .. .....-.+ |.|....++.+-...-+.||....+. . ......++. ..|.++.|++.. ..|+
T Consensus 171 i~L~~~~k-~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 171 IPLGTTNK-KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred EeccccCC-CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEE
Confidence 1 11 12345566 88988888888888777777665322 1 111111110 147778888754 4455
Q ss_pred EEeCCCcEEEEeCCCc
Q 028806 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
-+..++.+.-.|....
T Consensus 250 LS~ESr~l~Evd~~G~ 265 (316)
T COG3204 250 LSDESRRLLEVDLSGE 265 (316)
T ss_pred EecCCceEEEEecCCC
Confidence 5556677776666544
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.069 Score=39.58 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=83.1
Q ss_pred CcccccCC-EEEEEcCCCe-EEEEEcCCCeEEEeecCCccc--eEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccc
Q 028806 1 MTFAADAM-KLLGTSGDGT-LSVCNLRKNTVQTRSEFSEEE--LTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~ 71 (203)
|+|+|-.. -++.+-+-|+ ..++|..+.+...++...+.+ .-.-.|+|||.+|+..-.| |.|-+||.+..-.
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 35566543 3445544444 457777665544443322211 1223689999999876443 7899999975444
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcC------C------------CcEEEEEccCCceeeeeccCC---CCceEEE
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSE------N------------GLISLVGILPNRIIQPIAEHS---EYPIESL 129 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~------d------------~~i~~~d~~~~~~~~~~~~~~---~~~i~~i 129 (203)
.+-.+.. |.-....+ +.+||+.++.+.. + -.+.+.|..+|+.+....... .-.|..+
T Consensus 153 rvgE~~t-~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 153 RVGEFST-HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred eeccccc-CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 4555665 55555566 8999999987654 1 124445545565543332210 1268888
Q ss_pred EEeCCCCeEEEEeC
Q 028806 130 ALSHDRKFLGSISH 143 (203)
Q Consensus 130 ~~~~~~~~l~~~~~ 143 (203)
...+||+.++.+-.
T Consensus 232 d~g~dgtvwfgcQy 245 (366)
T COG3490 232 DIGRDGTVWFGCQY 245 (366)
T ss_pred eeCCCCcEEEEEEe
Confidence 88888877665543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.092 Score=40.95 Aligned_cols=137 Identities=9% Similarity=-0.003 Sum_probs=71.3
Q ss_pred CcccccCCEEEEEc-----------CCC-eEEEEEcCC--CeE--EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEE
Q 028806 1 MTFAADAMKLLGTS-----------GDG-TLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLY 64 (203)
Q Consensus 1 l~~sp~~~~l~~~~-----------~d~-~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 64 (203)
|+|.++|+++++-. ..+ .|.++.-.. ++. ...+...-.....+++.+++ +++ +......++.
T Consensus 19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~~~~ 96 (367)
T TIGR02604 19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDILFLR 96 (367)
T ss_pred eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEEEEe
Confidence 57889999877743 223 676665432 321 22332223456789998888 444 4444333333
Q ss_pred EcCCccc---cce----eeeccC----CCceeEE-EeeCCCEEEEEcCC-------------------CcEEEEEccCCc
Q 028806 65 SWGYFKD---CSD----RFVGLS----PNSVDAL-LKLDEDRVITGSEN-------------------GLISLVGILPNR 113 (203)
Q Consensus 65 d~~~~~~---~~~----~~~~~~----~~~v~~~-~~~~~~~l~~~~~d-------------------~~i~~~d~~~~~ 113 (203)
|....+. ..+ .+.. . ......+ +.|+|.+.++.+.. +.|..++...++
T Consensus 97 d~~gdg~ad~~~~~l~~~~~~-~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~ 175 (367)
T TIGR02604 97 DKDGDDKADGEREVLLSGFGG-QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK 175 (367)
T ss_pred CCCCCCCCCCccEEEEEccCC-CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence 5432110 111 1211 1 1234456 78998776654421 345555555443
Q ss_pred eeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 114 IIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 114 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
.. .+..... ....++|+|+|+++++-.
T Consensus 176 ~e-~~a~G~r-np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 176 LR-VVAHGFQ-NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EE-EEecCcC-CCccceECCCCCEEEEcc
Confidence 32 2322212 457899999998876644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.11 Score=39.54 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=40.8
Q ss_pred cEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCcccCC
Q 028806 103 LISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 103 ~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~ 159 (203)
.|.++|+.+++.+..+... . ++.+|..+.+.. +|++.+ .++.|.+||..++....
T Consensus 270 eVWv~D~~t~krv~Ri~l~-~-~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE-H-PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-E-EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred EEEEEECCCCeEEEEEeCC-C-ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 3778888888888888754 2 688999999775 565544 57899999999987654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.048 Score=43.60 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=89.9
Q ss_pred cCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC--------CEEEEecCCCeEEEEEcCCccccceee
Q 028806 6 DAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG--------RKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 6 ~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
+..+|+ .|.....++-.|+..|+.+.....|..- -+.|.|.. ..|+ |-.+..|.-.|.+..+..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence 344443 3445567888888888888777766554 46677643 2344 4445556666666544333322
Q ss_pred ec--c-CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VG--L-SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~--~-~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.. + ......+.......+|++++..|.|++||.-.-.....+++..+ +|..+..+.+|.+|++.| ...|.+-|++
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 21 0 12233344455667999999999999999543334444555534 899999999999887766 4577777765
Q ss_pred C
Q 028806 154 D 154 (203)
Q Consensus 154 ~ 154 (203)
-
T Consensus 633 i 633 (776)
T COG5167 633 I 633 (776)
T ss_pred c
Confidence 3
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.098 Score=38.38 Aligned_cols=147 Identities=11% Similarity=0.086 Sum_probs=77.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC------eEEEeec-----CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC--
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKN------TVQTRSE-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-- 68 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~------~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-- 68 (203)
++.-++.++++.-+++.+.++.+... .....+. .+...+-.++|.|.++.|+.+-...-..+|.+..
T Consensus 71 ~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 71 TYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp EE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred EEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 34445666666666889998888421 1111121 2445689999999888888777766666776653
Q ss_pred ccccceee-----e--ccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCC--------CceEEEEE
Q 028806 69 FKDCSDRF-----V--GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSE--------YPIESLAL 131 (203)
Q Consensus 69 ~~~~~~~~-----~--~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--------~~i~~i~~ 131 (203)
....+... . ......+..+ ++|. +++++.+.....|..+| ..|+.+..+....+ ..--.|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEE
Confidence 11111111 0 0023346677 7775 56666777788888899 66777655543321 14678999
Q ss_pred eCCCCeEEEEeCCCcEEEE
Q 028806 132 SHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iw 150 (203)
.++|+..++ +.-+..++|
T Consensus 230 d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 230 DPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -TT--EEEE-ETTTEEEEE
T ss_pred CCCCCEEEE-cCCceEEEe
Confidence 999865554 455555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.12 Score=39.06 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=71.0
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee----eec
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR----FVG 78 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~----~~~ 78 (203)
-+++|++++++..-..+.-|+.-...-...-.....+|..+.|.|++.+.+.+ ..|.|++=+.......... +..
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc
Confidence 46789988888775556677754321222222345789999999998776654 7788887762211121111 111
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC--CCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
....+..+ +.+++...++|+ .|.+ +.....|+.-+..+... ...++.|.|.+..+-+ ..+.+|.|.-|
T Consensus 231 -~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 231 -NGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQDGVLLRY 301 (302)
T ss_dssp ---S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-STTEEEEE
T ss_pred -CceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCCcEEEEe
Confidence 22335666 777766666554 4544 45555666554443311 2257888887664444 44568877655
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0055 Score=32.39 Aligned_cols=28 Identities=7% Similarity=0.198 Sum_probs=26.9
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.|.+++|+|...+||.+..+|.|.++.+
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 6999999999999999999999999998
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.07 Score=41.98 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=71.5
Q ss_pred ceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc------------------------------------------ceee
Q 028806 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC------------------------------------------SDRF 76 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~------------------------------------------~~~~ 76 (203)
.|+.+.|.+...-|+++...|.|-+|.+...+.. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4677888888788888888888888766421100 0001
Q ss_pred eccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeee--cc-----CCCCceEEEEEeC-----CC---CeEEEE
Q 028806 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI--AE-----HSEYPIESLALSH-----DR---KFLGSI 141 (203)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~-----~~~~~i~~i~~~~-----~~---~~l~~~ 141 (203)
.. ..++|+++...+=.+++.|..+|.+.|.|+|....+..- .. .....|+++.|.. |+ -.|++|
T Consensus 83 ~~-~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DA-KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ----S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred ec-cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 12 345677775556778999999999999999876655442 22 1122577888863 33 357788
Q ss_pred eCCCcEEEEeCC
Q 028806 142 SHDSMLKLWDLD 153 (203)
Q Consensus 142 ~~d~~i~iwd~~ 153 (203)
...|.+.+|.+-
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 889999999884
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.11 Score=37.42 Aligned_cols=128 Identities=13% Similarity=0.031 Sum_probs=74.1
Q ss_pred ccccCCEEEEEcCC---------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCcc--
Q 028806 3 FAADAMKLLGTSGD---------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFK-- 70 (203)
Q Consensus 3 ~sp~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~-- 70 (203)
.+|+|++.+-...| |.++.|-... .+..+...-..-+.++|+.+.+.++... .+-+|.-||.....
T Consensus 116 vdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~ 193 (310)
T KOG4499|consen 116 VDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD 193 (310)
T ss_pred cCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCccc
Confidence 47888885433222 3444444321 1111222223345788998887776554 46677778743211
Q ss_pred ----ccceeeecc--CCCc-eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC
Q 028806 71 ----DCSDRFVGL--SPNS-VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 71 ----~~~~~~~~~--~~~~-v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~ 133 (203)
..+..+... .... .-.+ ...+|++.++.-..++|...|+.+|+.+.++...+. .|++++|--
T Consensus 194 ~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~-qitsccFgG 263 (310)
T KOG4499|consen 194 LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP-QITSCCFGG 263 (310)
T ss_pred ccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC-ceEEEEecC
Confidence 111111110 0011 1112 355677788888888999999999999999988866 899999954
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0071 Score=31.96 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=28.3
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 67 (203)
...|..++|+|...+++.++.+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4568999999999999999999999999984
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.14 Score=37.71 Aligned_cols=139 Identities=16% Similarity=0.073 Sum_probs=80.2
Q ss_pred cccccCCEEEEEc---CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEE-cCCccccceeee
Q 028806 2 TFAADAMKLLGTS---GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS-WGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd-~~~~~~~~~~~~ 77 (203)
++|++++.++... ....|+++..... ....+. ...+....|++++...+....+...+++. ..........+.
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~ 106 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD 106 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec
Confidence 6789998776655 3345555554332 222222 23678889999977766666566666663 221111111222
Q ss_pred ccCC-CceeEE-EeeCCCEEEEEc---CCCcEEEEEcc---CC------ceeeeeccCCCCceEEEEEeCCCCeEEEEeC
Q 028806 78 GLSP-NSVDAL-LKLDEDRVITGS---ENGLISLVGIL---PN------RIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 78 ~~~~-~~v~~~-~~~~~~~l~~~~---~d~~i~~~d~~---~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 143 (203)
.... ..|..+ ++|+|..++... .++.|.+--+. .+ ..+...... ...+..+.|.+++.+++.+..
T Consensus 107 ~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 107 WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcceeeeecCCCEEEEEeCC
Confidence 1011 278889 999999988766 24667766543 23 111222222 226899999999987776654
Q ss_pred C
Q 028806 144 D 144 (203)
Q Consensus 144 d 144 (203)
.
T Consensus 186 ~ 186 (253)
T PF10647_consen 186 A 186 (253)
T ss_pred C
Confidence 3
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.083 Score=43.62 Aligned_cols=144 Identities=8% Similarity=0.065 Sum_probs=72.4
Q ss_pred cCCEEEEEcCCC-----eEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCCC-------------------
Q 028806 6 DAMKLLGTSGDG-----TLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSG------------------- 59 (203)
Q Consensus 6 ~~~~l~~~~~d~-----~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------- 59 (203)
+++..+.|+.++ ++..||..+..-.. .+.........+ .-++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence 456667776643 47788887653321 222111111112 23677777776542
Q ss_pred ----eEEEEEcCCccccceeeeccCCCce-eEEEeeCCCEEEEEcCC------CcEEEEEccC-Ccee--eeeccCCCCc
Q 028806 60 ----TVLLYSWGYFKDCSDRFVGLSPNSV-DALLKLDEDRVITGSEN------GLISLVGILP-NRII--QPIAEHSEYP 125 (203)
Q Consensus 60 ----~i~~wd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~l~~~~~d------~~i~~~d~~~-~~~~--~~~~~~~~~~ 125 (203)
.+..||..+ ..+..+........ .++..-++.+.+.|+.+ ..+..||..+ .+-. ..+..... .
T Consensus 429 ~~~~~ve~YDP~t--d~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVN--NIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-A 505 (557)
T ss_pred cccceEEEECCCC--CeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-c
Confidence 466777653 22322221001111 12234466777777653 2367899886 4432 33332211 1
Q ss_pred eEEEEEeCCCCeEEEEeCCC--cEEEEeCCCcc
Q 028806 126 IESLALSHDRKFLGSISHDS--MLKLWDLDDIL 156 (203)
Q Consensus 126 i~~i~~~~~~~~l~~~~~d~--~i~iwd~~~~~ 156 (203)
...+.+ ++...++|+.++ .+..||..+.+
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 222222 778888888887 66777766543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.11 Score=40.29 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=74.0
Q ss_pred CcccccCCEEEEE--cCC---CeEEEEEcCCCeEEEeecC-Cccc---eEEEEEe-eCCC-EEEEecCCCeEEEEEcCCc
Q 028806 1 MTFAADAMKLLGT--SGD---GTLSVCNLRKNTVQTRSEF-SEEE---LTSVVLM-KNGR-KVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~--~~d---~~i~vw~~~~~~~~~~~~~-~~~~---v~~~~~~-~~~~-~l~~~~~d~~i~~wd~~~~ 69 (203)
+.|.++++.|+.. .++ ..+.++|..++.....++. .... .....|. +++. +|.....+|.-.+|-+...
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 3577888744332 222 2356667766533222211 1111 2244444 5554 4445556776666555444
Q ss_pred cccceeeeccCCCceeEE--EeeCCCEEEE-EcC----CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 70 KDCSDRFVGLSPNSVDAL--LKLDEDRVIT-GSE----NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~--~~~~~~~l~~-~~~----d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
+.....+.. ....|..+ ++++++.|+. +.. ...|...++..+.....+..... ....+.|+|++++++..+
T Consensus 269 ~~~~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 269 GGKPRQLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-DHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSEEEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-TTEEEEE-TTSSEEEEEE
T ss_pred ccceecccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-CceEEEECCCCCEEEEEE
Confidence 444556665 56677666 6888777664 443 23455555552345555655533 225899999999887544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.31 Score=40.06 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCcEEEEEccCCceeeeeccCC
Q 028806 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHS 122 (203)
Q Consensus 91 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 122 (203)
.+.+++.++.+|.++.+|.++|+.+...+...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 55677778889999999999999998887653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.13 Score=40.71 Aligned_cols=111 Identities=16% Similarity=0.099 Sum_probs=66.5
Q ss_pred EEEEEeeCCCEEEEe-cCC----CeEEEEEcCCccccce-eeeccCCCceeEE-EeeCCCEEEEEcCCC-----------
Q 028806 41 TSVVLMKNGRKVVCG-SQS----GTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKLDEDRVITGSENG----------- 102 (203)
Q Consensus 41 ~~~~~~~~~~~l~~~-~~d----~~i~~wd~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~d~----------- 102 (203)
....++|++++++.+ +.. ..++++|+.+. ..+. .+.. . ....+ |.++++.|+....+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~--~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN--P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE--E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc--c-ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 356788999988754 233 36999999864 3332 2222 1 11226 899988877654322
Q ss_pred cEEEEEccCCcee--eeeccCCCCc-eEEEEEeCCCCeEEEEe---CC-CcEEEEeCCCc
Q 028806 103 LISLVGILPNRII--QPIAEHSEYP-IESLALSHDRKFLGSIS---HD-SMLKLWDLDDI 155 (203)
Q Consensus 103 ~i~~~d~~~~~~~--~~~~~~~~~~-i~~i~~~~~~~~l~~~~---~d-~~i~iwd~~~~ 155 (203)
.|+.|.+.+.... ..+......- ...+..++++++|+... .+ ..+++.++...
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 3777777765432 3344432222 56788999999977544 23 45788888764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.3 Score=37.08 Aligned_cols=146 Identities=16% Similarity=0.102 Sum_probs=78.3
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 78 (203)
.|.++...| .+--..+.|.-|+..++... .+. ....+.++..-..+..|+++.. -+.+++.... ..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~-~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTG-GKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCC-ceeEEecccc
Confidence 356666644 34445677888887765432 222 2233445544444455555543 3555565432 22122211
Q ss_pred --cCCCceeEE-EeeCCCEEEEEcC-----------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC-
Q 028806 79 --LSPNSVDAL-LKLDEDRVITGSE-----------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH- 143 (203)
Q Consensus 79 --~~~~~v~~~-~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~- 143 (203)
........+ ..|+|.+.+.... -|.|+.++. .+..+..+..+-. .-+.|+||||++.|+.+.+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~-~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT-IPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE-ecCceEECCCCCEEEEEeCC
Confidence 011233444 6788877665333 133444443 4566655555322 3468999999988776664
Q ss_pred CCcEEEEeCCC
Q 028806 144 DSMLKLWDLDD 154 (203)
Q Consensus 144 d~~i~iwd~~~ 154 (203)
.+.|.-|++..
T Consensus 184 ~~~i~r~~~d~ 194 (307)
T COG3386 184 ANRIHRYDLDP 194 (307)
T ss_pred CCeEEEEecCc
Confidence 47888888763
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.31 Score=40.33 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=68.3
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCCC-----eEEEEEcCCccccc
Q 028806 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~ 73 (203)
++..++.|+.+ ..+..||..++.-. .+..- ..+.......-++...+.|+.++ .+..||..+ ..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~--~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGD--DKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCC--CeE
Confidence 34555666643 34677887765432 11111 11111122233677777777653 478888763 233
Q ss_pred eeeeccCCCcee--EEEeeCCCEEEEEcCCC-----------------------cEEEEEccCCceeeeeccCCCCceEE
Q 028806 74 DRFVGLSPNSVD--ALLKLDEDRVITGSENG-----------------------LISLVGILPNRIIQPIAEHSEYPIES 128 (203)
Q Consensus 74 ~~~~~~~~~~v~--~~~~~~~~~l~~~~~d~-----------------------~i~~~d~~~~~~~~~~~~~~~~~i~~ 128 (203)
..+.. -..+.. ++..-++.+.+.|+.++ .+..||+.+.+-...-..... ....
T Consensus 380 ~~~~~-mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~ 457 (557)
T PHA02713 380 KMLPD-MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRP 457 (557)
T ss_pred EECCC-CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-cccC
Confidence 33222 111111 12344677777776542 467788776543221111111 1111
Q ss_pred EEEeCCCCeEEEEeCC------CcEEEEeCCC
Q 028806 129 LALSHDRKFLGSISHD------SMLKLWDLDD 154 (203)
Q Consensus 129 i~~~~~~~~l~~~~~d------~~i~iwd~~~ 154 (203)
.+..-++...+.|+.+ ..+..||..+
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 1222356666666643 2356777765
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.32 Score=39.96 Aligned_cols=142 Identities=12% Similarity=0.017 Sum_probs=67.9
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCC------CeEEEEEcCCcccc
Q 028806 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDC 72 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~ 72 (203)
+++.++.|+.+ ..+..||..+++-.. .+....... ++ ..-++..++.|+.. ..+..||..+ ..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t--~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNT--NK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCC--Ce
Confidence 45566666654 346777876653321 111111111 12 22356666776632 3578888753 22
Q ss_pred ceeeeccCCCc--eeEEEeeCCCEEEEEcCC--------CcEEEEEccCCceeee--eccCCCCceEEEEEeCCCCeEEE
Q 028806 73 SDRFVGLSPNS--VDALLKLDEDRVITGSEN--------GLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 73 ~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
+..... ...+ -.++...++..++.|+.. ..+.+||+.+++-... +... ......+. .++..++.
T Consensus 418 W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~iyv~ 493 (534)
T PHA03098 418 WSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI--FNNKIYVV 493 (534)
T ss_pred eeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE--ECCEEEEE
Confidence 322221 1111 112234456666666542 2378889877643322 1111 11111222 26666667
Q ss_pred EeCC-----CcEEEEeCCCc
Q 028806 141 ISHD-----SMLKLWDLDDI 155 (203)
Q Consensus 141 ~~~d-----~~i~iwd~~~~ 155 (203)
|+.+ ..+.+||..+.
T Consensus 494 GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCcCCcccceeEEEeCCCC
Confidence 7643 46788887654
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.022 Score=29.31 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=25.8
Q ss_pred ceEEEEEeCCC---CeEEEEeCCCcEEEEeCCCc
Q 028806 125 PIESLALSHDR---KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 125 ~i~~i~~~~~~---~~l~~~~~d~~i~iwd~~~~ 155 (203)
+|.++.|+|+. .+|+.+-.-+.|.|+|+++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 68999999854 47888778899999999953
|
It contains a characteristic DLL sequence motif. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.57 Score=39.85 Aligned_cols=104 Identities=10% Similarity=-0.014 Sum_probs=61.1
Q ss_pred cccccCCEEEEEcC-----CCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCCCEEEEecCC------CeEEEEEcCCc
Q 028806 2 TFAADAMKLLGTSG-----DGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYF 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-----d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~ 69 (203)
.|||+|++|+.+.. ...|++.++.++..+. .+.. . -..++|.++++.|+.+..+ ..|+++++.+.
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 58999998887633 2458899998875322 2221 1 1458999999877665432 36777777653
Q ss_pred c-ccceeeeccCCCcee-EEE-eeCCCEEEEEcC---CCcEEEEEc
Q 028806 70 K-DCSDRFVGLSPNSVD-ALL-KLDEDRVITGSE---NGLISLVGI 109 (203)
Q Consensus 70 ~-~~~~~~~~~~~~~v~-~~~-~~~~~~l~~~~~---d~~i~~~d~ 109 (203)
. .....+.. ...... ..+ +.++.+++..+. ++.+.+++.
T Consensus 210 ~~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 210 ASQDELVYEE-KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred hhHCeEEEee-CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 2 12223332 223333 224 447887665443 456888884
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.026 Score=49.01 Aligned_cols=137 Identities=16% Similarity=0.037 Sum_probs=84.2
Q ss_pred ccccCCEEEE--EcCCCeEEEEEcCCCe--------EEE---eecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCC
Q 028806 3 FAADAMKLLG--TSGDGTLSVCNLRKNT--------VQT---RSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~--~~~d~~i~vw~~~~~~--------~~~---~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~ 68 (203)
.++|+...++ .+.+-.|.+||+.+-. ++. ..........++.|+|.-. ..+++..|+.|++..+..
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 3456554333 3334478889986421 111 1111223456778888532 345666788999888764
Q ss_pred ccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC---CCCceEEEEEeCCCCeEEEEe
Q 028806 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH---SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~ 142 (203)
....+..+. .....+++ |+|.|+.++.|-..|++.-|-.. .+....+.+. ..+.|.+|+|-....+|++-+
T Consensus 188 ~~~~v~s~p--~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 188 LAQNVTSFP--VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred hhhhhcccC--cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 434444444 34566777 99999999999999999888643 3433333322 124799999988877776543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.32 Score=36.32 Aligned_cols=119 Identities=9% Similarity=0.036 Sum_probs=76.2
Q ss_pred cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC
Q 028806 34 EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (203)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~ 112 (203)
.+....+.++.|+|+.+.|++........++-. +.+..+.++.-......-.+ +-.++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt-~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELT-KEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEe-cCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344556999999999998888777666655533 45677766543122333445 5556666666666788888776654
Q ss_pred ceeee-----ec----cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 113 RIIQP-----IA----EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 113 ~~~~~-----~~----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
..+.. +. .+.......++|.|.+..|+.+-.-.=+.||.+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 22111 11 1112246789999998888888777777777665
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.46 Score=35.06 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=82.4
Q ss_pred ccccCCEEEEEcCCC--eEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 3 FAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
|..++.++-+.+.-| .|+.+++.+++......-.. .---.++.. +.+...-.=.++...+||..+ -+.+..+.-
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~t-l~~~~~~~y- 128 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNT-LKKIGTFPY- 128 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTT-TEEEEEEE--
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEcccc-ceEEEEEec-
Confidence 445666666666544 79999999998765443222 111233333 222333334578999999875 345555543
Q ss_pred CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+.=+.+ ..++..|+.+.....|+++|..+.+....+..... ..+..+.|. +|...|=.-....|...|..++
T Consensus 129 -~~EGWGL-t~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 129 -PGEGWGL-TSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp -SSS--EE-EECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred -CCcceEE-EcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 3344555 36777788877788899999888776655543311 134556665 4544444444555666666665
Q ss_pred ccC
Q 028806 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
...
T Consensus 206 ~V~ 208 (264)
T PF05096_consen 206 KVV 208 (264)
T ss_dssp BEE
T ss_pred eEE
Confidence 543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.67 Score=38.53 Aligned_cols=145 Identities=12% Similarity=0.031 Sum_probs=77.4
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEEEeecCCccceEEEEE-eeCCCEEEEecCCC-----eEEEEEcCCccccc
Q 028806 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEEELTSVVL-MKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~ 73 (203)
++...++|+.+ .++..||..+++-.. +..-..+-..+.. .-+|...++|+.|| ++..||..+ ..+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~--~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT--NKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC--Ccc
Confidence 45667788887 357788877665322 1111111111111 23677888888886 477777653 333
Q ss_pred eeeeccCCCceeEE--EeeCCCEEEEEcCCC------cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC
Q 028806 74 DRFVGLSPNSVDAL--LKLDEDRVITGSENG------LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 74 ~~~~~~~~~~v~~~--~~~~~~~l~~~~~d~------~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
..... ........ ..-+|.+.++|+.++ .+..||..++.-...-.......-..++ .-++.+.+.|+.|+
T Consensus 409 ~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 409 TPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDG 486 (571)
T ss_pred cccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccC
Confidence 33322 22222222 456788888887543 4678888776544322222111111222 22667777777665
Q ss_pred c-----EEEEeCCCc
Q 028806 146 M-----LKLWDLDDI 155 (203)
Q Consensus 146 ~-----i~iwd~~~~ 155 (203)
. +..||..+.
T Consensus 487 ~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 487 TSALSSVERYDPETN 501 (571)
T ss_pred CCccceEEEEcCCCC
Confidence 3 666776654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.8 Score=37.65 Aligned_cols=144 Identities=9% Similarity=-0.058 Sum_probs=66.7
Q ss_pred CCEEEEEcCCC------eEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccce
Q 028806 7 AMKLLGTSGDG------TLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 7 ~~~l~~~~~d~------~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~ 74 (203)
+..++.|+.++ .+..||..+..... +.... .+.......-++..++.|+.+ ..+..||..+ ..+.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGE--SKWR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCC--Ccee
Confidence 34455555432 46778877654422 21111 111111222356677777764 3466777653 2233
Q ss_pred eeeccCCCce--eEEEeeCCCEEEEEcCC------CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC--
Q 028806 75 RFVGLSPNSV--DALLKLDEDRVITGSEN------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-- 144 (203)
Q Consensus 75 ~~~~~~~~~v--~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-- 144 (203)
.... ...+. .++...++...+.|+.. ..+..||+.+++-...-.......-.+++ ..++..++.|+.+
T Consensus 372 ~~~~-lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPP-LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYI 449 (534)
T ss_pred eCCC-cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccCC
Confidence 2221 11111 11234466667777632 35788998765433211111010111222 2355566666532
Q ss_pred ------CcEEEEeCCCc
Q 028806 145 ------SMLKLWDLDDI 155 (203)
Q Consensus 145 ------~~i~iwd~~~~ 155 (203)
..+.+||..+.
T Consensus 450 ~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 450 DNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCCcccceEEEecCCCC
Confidence 13788887654
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.28 Score=38.83 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=57.3
Q ss_pred CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCc-eeEE--EeeCC----------------C-E
Q 028806 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS-VDAL--LKLDE----------------D-R 94 (203)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-v~~~--~~~~~----------------~-~ 94 (203)
.....+.++..+|.+++.++...-|.|.++|+.. +..++.+++ .... +.-+ ..... . +
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKG-YRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKG-YRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-Chhhhhhcc-CccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3445578899999999999988889999999974 567777777 3332 2111 11111 1 2
Q ss_pred EEEEcCCCcEEEEEccCCceeeeeccC
Q 028806 95 VITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 95 l~~~~~d~~i~~~d~~~~~~~~~~~~~ 121 (203)
++.+-..|.|-||.++.|..+..+...
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 334556788888988888777666554
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.16 Score=36.64 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=48.4
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeee-------ecc------CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRIIQP-------IAE------HSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-------~~~------~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+...+.++++.+.+|.+++||+.+++.+.. +.. .....|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 466888999999999999999998764422 111 1123688999999998877765 5788998864
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.63 Score=35.29 Aligned_cols=108 Identities=14% Similarity=0.137 Sum_probs=57.0
Q ss_pred CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc-cCCc
Q 028806 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI-LPNR 113 (203)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~-~~~~ 113 (203)
..+.+..+.-++++++++++..-..+.-|+-. ..............+..+ |.|++.+.+.+ ..|.|++=+. ...+
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 34568888888999999988776666677743 233443332135678889 99998776655 7788887762 2222
Q ss_pred eeee--ecc-CCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 114 IIQP--IAE-HSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 114 ~~~~--~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
.... ... .....+..++|.+++...++++ .|.+
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l 255 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL 255 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE
Confidence 1111 111 1123588999999877777665 4443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.58 Score=34.52 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=65.6
Q ss_pred ceEEEEEeeCCCEEEEec---CCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEE-ccCCc
Q 028806 39 ELTSVVLMKNGRKVVCGS---QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG-ILPNR 113 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d-~~~~~ 113 (203)
.+.+.++++++..++... ....++++... +.....+.+ ..+... |++++...+....+....++. ..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g---~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG---GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC---CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688899999998776655 33455555443 222222232 245555 888977777766666666663 23332
Q ss_pred ee-eeeccCCCC-ceEEEEEeCCCCeEEEEe---CCCcEEEEeC
Q 028806 114 II-QPIAEHSEY-PIESLALSHDRKFLGSIS---HDSMLKLWDL 152 (203)
Q Consensus 114 ~~-~~~~~~~~~-~i~~i~~~~~~~~l~~~~---~d~~i~iwd~ 152 (203)
.. ..+...... .|..+.++|||..++... .++.|.+=-+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 22 112222111 699999999999877655 3466766654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.7 Score=36.63 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=48.0
Q ss_pred CCeEEEEEcCCCeEEEeecCCc--cceEEEEEeeC--CCEEEEe-cCCCeEEEEEcCCccc----cceee----------
Q 028806 16 DGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKN--GRKVVCG-SQSGTVLLYSWGYFKD----CSDRF---------- 76 (203)
Q Consensus 16 d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~--~~~l~~~-~~d~~i~~wd~~~~~~----~~~~~---------- 76 (203)
-.++.+||+.+.+.++++.-.. .....|.|..+ ..+=+++ .-.++|..|--...+. .+-.+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 4679999999999999887543 24556777654 3333333 2344444443211110 00011
Q ss_pred -------eccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccC
Q 028806 77 -------VGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILP 111 (203)
Q Consensus 77 -------~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~ 111 (203)
.. -..-++.+ .|.|.++|+.++. .|.|+.||+..
T Consensus 301 p~ml~~~~~-~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 301 PEMLKPFGA-VPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -GGGGGG-E-E------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccc-CCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 11 12346777 7999999998876 89999999975
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.81 Score=35.73 Aligned_cols=122 Identities=9% Similarity=-0.048 Sum_probs=61.1
Q ss_pred eEEEEEcCCCeEEEeecCCccceEEEEEeeCC-CEEEEecC---CC-eEEEEEcCCccccceeeeccCCCceeE-E--Ee
Q 028806 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQ---SG-TVLLYSWGYFKDCSDRFVGLSPNSVDA-L--LK 89 (203)
Q Consensus 18 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~---d~-~i~~wd~~~~~~~~~~~~~~~~~~v~~-~--~~ 89 (203)
.|...++.+|+....+. ....+..+.|+|.. ..|+.|-. +. .-+||-++..+.....+.. +.....+ - |.
T Consensus 169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-RMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-
T ss_pred eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-CCCCccccccccc
Confidence 46666777776544443 45667889999854 44444432 22 2477877665555555544 3322222 2 79
Q ss_pred eCCCEEEEEcC-----CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 90 LDEDRVITGSE-----NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 90 ~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
|+|..|..-+. +..|.-+|+.+++........ +...+.-+++|++++-=+.|
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCC
Confidence 99998776432 445777888887665433332 35566678898887754443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.96 Score=35.90 Aligned_cols=150 Identities=11% Similarity=0.092 Sum_probs=74.3
Q ss_pred ccCCEEEEEc--C----CCeEEEEEcCCCeEEEeecCCc---cceEEEEEeeCCCEEEEecC------------------
Q 028806 5 ADAMKLLGTS--G----DGTLSVCNLRKNTVQTRSEFSE---EELTSVVLMKNGRKVVCGSQ------------------ 57 (203)
Q Consensus 5 p~~~~l~~~~--~----d~~i~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~------------------ 57 (203)
|+|+.++++- . -|.+.++|-.+-+.....+... .--..+-|.|..+.++++..
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 6777777652 2 2567788877766665554322 23456778888888888532
Q ss_pred --CCeEEEEEcCCccccceeeeccCCC--ceeEE-E--eeCCCEEEEEcC-CCcEEEEEc-cCCc----eeeeeccCC--
Q 028806 58 --SGTVLLYSWGYFKDCSDRFVGLSPN--SVDAL-L--KLDEDRVITGSE-NGLISLVGI-LPNR----IIQPIAEHS-- 122 (203)
Q Consensus 58 --d~~i~~wd~~~~~~~~~~~~~~~~~--~v~~~-~--~~~~~~l~~~~~-d~~i~~~d~-~~~~----~~~~~~~~~-- 122 (203)
-.++.+||+.. .+.++++.- ... ....+ | .|+..+-++++. ...|..|-- ..++ .+..+....
T Consensus 219 ~yG~~l~vWD~~~-r~~~Q~idL-g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 219 KYGHSLHVWDWST-RKLLQTIDL-GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp -S--EEEEEETTT-TEEEEEEES--TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccCeEEEEECCC-CcEeeEEec-CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 25899999974 566777654 322 23334 4 566665444443 444555443 3332 111221100
Q ss_pred --------------CCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcc
Q 028806 123 --------------EYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDIL 156 (203)
Q Consensus 123 --------------~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (203)
..-|+.|.+|.|.++|..++ .+|.|+.||+....
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 01368899999999998777 78999999997754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.16 Score=36.65 Aligned_cols=71 Identities=30% Similarity=0.335 Sum_probs=50.3
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEee-------c-------CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRS-------E-------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
..++.+|++.+.+|.+++||+.+.+.+..- . .....|..+.++.+|.-+++-+ +|..+.|+...
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L- 96 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL- 96 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc-
Confidence 456788988899999999999987654211 1 2446688888888888777665 47788888752
Q ss_pred cccceeee
Q 028806 70 KDCSDRFV 77 (203)
Q Consensus 70 ~~~~~~~~ 77 (203)
.++..+.
T Consensus 97 -~~W~~vs 103 (219)
T PF07569_consen 97 -GCWIRVS 103 (219)
T ss_pred -ceeEEec
Confidence 4444443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.22 Score=40.07 Aligned_cols=95 Identities=14% Similarity=0.220 Sum_probs=63.5
Q ss_pred EEEcCCCeEEEEEcCC-Ce-EEEeecCC----ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce
Q 028806 11 LGTSGDGTLSVCNLRK-NT-VQTRSEFS----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 11 ~~~~~d~~i~vw~~~~-~~-~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
+.|-.++.|.-||.+- +. .+...+.| .....|.+-..+| ++++|+.+|.|++||- ........+.+ -..+|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPg-LG~~I 474 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPG-LGDAI 474 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccc-cCCce
Confidence 4455678899999873 22 22222222 1234555555444 7889999999999997 34455566777 77889
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~ 109 (203)
..+ .+.+|++|+..|... +.+.++
T Consensus 475 ~hVdvtadGKwil~Tc~ty-LlLi~t 499 (644)
T KOG2395|consen 475 KHVDVTADGKWILATCKTY-LLLIDT 499 (644)
T ss_pred eeEEeeccCcEEEEecccE-EEEEEE
Confidence 999 899999988776553 445554
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.6 Score=36.05 Aligned_cols=149 Identities=15% Similarity=0.082 Sum_probs=85.6
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCc----cceEEEEEeeCCCEEEEec------CCCeEEEEEcCCccccceeee
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE----EELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~~~~~~~ 77 (203)
..|+.++.++.|.-+|..+|+.+....... ..+.+.-.--++ .++++. .+|.|..+|..+.....+ +.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~-~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR-RY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEe-cc
Confidence 456777888999999999998887654211 111111111134 344433 267888888865432221 11
Q ss_pred cc------------------------------CCCceeEE--EeeCCCEEEEEcCC-----C-----------cEEEEEc
Q 028806 78 GL------------------------------SPNSVDAL--LKLDEDRVITGSEN-----G-----------LISLVGI 109 (203)
Q Consensus 78 ~~------------------------------~~~~v~~~--~~~~~~~l~~~~~d-----~-----------~i~~~d~ 109 (203)
.. ....++.. +.|...+++.+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 10 01223332 45555666655422 2 5667888
Q ss_pred cCCceeeeeccCCC--------CceEEEEEeCCCC---eEEEEeCCCcEEEEeCCCcccC
Q 028806 110 LPNRIIQPIAEHSE--------YPIESLALSHDRK---FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 110 ~~~~~~~~~~~~~~--------~~i~~i~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
++|+....++.... ....-+.+..+|+ .++.+..+|.+++.|-++++..
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 99998876654221 1111223334665 6778889999999999998764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.0033 Score=49.54 Aligned_cols=132 Identities=11% Similarity=0.151 Sum_probs=85.7
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeeccC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
.|-|.+.-++.+..+..+..||-.. +....+. .......++|..++..++ .+-..+.+++||+... .-+.+.. .
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~e--ytqqLE~-g 115 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE--YTQQLES-G 115 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhh--hHHHHhc-c
Confidence 3556666677777777777777443 2222222 234566788888776654 4556789999999742 2223332 2
Q ss_pred CCceeEE--EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 81 PNSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 81 ~~~v~~~--~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
...-.++ |++....++.+...|.+.+|+..+.+.+...-.|.. ++.+++|.+.+..+.
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R-Rgtq~av~lEd~vil 175 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR-RGTQIAVTLEDYVIL 175 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc-ceeEEEecccceeee
Confidence 2222233 788888899999999999999887666554444644 789999999865443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.9 Score=37.99 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=59.9
Q ss_pred EEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEe--eCCCEEEEecCCCeEEEEEcC-----Cccc---cceee--e
Q 028806 11 LGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLM--KNGRKVVCGSQSGTVLLYSWG-----YFKD---CSDRF--V 77 (203)
Q Consensus 11 ~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~wd~~-----~~~~---~~~~~--~ 77 (203)
++-+....+.|||...+.....-. .....|..+.|. |+++.+++.+..+.|.+|--. +... .+..+ .
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~ 124 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS 124 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence 333344679999998876433222 346789999996 588888888888888887431 1111 22222 2
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEE
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVG 108 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d 108 (203)
.....+|... |-++|..++.++. .+.|++
T Consensus 125 ~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 125 SHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred cCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence 2023567777 8888876665443 466766
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.6 Score=35.54 Aligned_cols=139 Identities=10% Similarity=-0.105 Sum_probs=65.5
Q ss_pred cCCEEEEEcCC--CeEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEEEecCCC---eEEEEEcCCccccceeeecc
Q 028806 6 DAMKLLGTSGD--GTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~ 79 (203)
++...+.|+.+ ..+..|+..++.-.. +..-. .........-+++..+.|+.++ .+..||..+ ..+.....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~--~~W~~~~~- 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH--DQWQFGPS- 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC--CEEEeCCC-
Confidence 45555666643 357778876553322 11111 1111122233677777777543 466787653 23332221
Q ss_pred CCCce--eEEEeeCCCEEEEEcCCCcEEEEEccCCceee--eeccCCCCceEEEEEeCCCCeEEEEeCC-----CcEEEE
Q 028806 80 SPNSV--DALLKLDEDRVITGSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSISHD-----SMLKLW 150 (203)
Q Consensus 80 ~~~~v--~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~iw 150 (203)
-..+. .++...++.+.+.|+ .+.+||..+++-.. .+... .... +++ .-+++..+.|+.+ ..+..|
T Consensus 394 m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~-r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Y 467 (480)
T PHA02790 394 TYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP-RDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVY 467 (480)
T ss_pred CCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCC-cccc-EEE-EECCEEEEECCcCCCcccceEEEE
Confidence 11111 122344566666653 46788887654332 22211 1112 222 2366777777743 346666
Q ss_pred eCCC
Q 028806 151 DLDD 154 (203)
Q Consensus 151 d~~~ 154 (203)
|..+
T Consensus 468 d~~~ 471 (480)
T PHA02790 468 NNRT 471 (480)
T ss_pred ECCC
Confidence 6654
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.29 Score=41.63 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=48.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC----------CeE--E-Eee--------cCCccceEEEEEeeC---CCEEEEec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK----------NTV--Q-TRS--------EFSEEELTSVVLMKN---GRKVVCGS 56 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~----------~~~--~-~~~--------~~~~~~v~~~~~~~~---~~~l~~~~ 56 (203)
|.+||.|.+|+..+..| |.|..+.. ++. . +++ ..+...|..+.|+|. +..|++-.
T Consensus 90 i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLt 168 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLT 168 (717)
T ss_pred EEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEe
Confidence 35789999998888755 44444421 111 1 111 123457889999996 47888888
Q ss_pred CCCeEEEEEcCCcccccee
Q 028806 57 QSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 57 ~d~~i~~wd~~~~~~~~~~ 75 (203)
.|+.+++||+.....+...
T Consensus 169 sdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 169 SDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred cCCEEEEEecCCCCCCeEE
Confidence 9999999999754444433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.2 Score=35.57 Aligned_cols=133 Identities=12% Similarity=0.078 Sum_probs=74.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc---eeeecc
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS---DRFVGL 79 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~ 79 (203)
|.+..+.+.+.|.+.=|-.... -++..--...++|.++.|++|.+.+++--.+.+|.++......... ...+.
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~- 110 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT- 110 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc-
Confidence 3344444444455555554432 1111112345689999999999999999999999999874211111 11122
Q ss_pred CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
....|...+..+..-++.....| +-+|..... +.+.....+.- .|.-..|.|+-+.++-+
T Consensus 111 k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~-nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 111 KNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNL-NVNWYMYCPETAVILLS 171 (657)
T ss_pred CcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhccc-CccEEEEccccceEeee
Confidence 23335555334446666666655 556654432 23334444533 67778888887754433
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.24 Score=39.30 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=88.3
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEE-Eee-cC-Cc---cceE-EEEEeeCCCEEEEecCCCeEEEE-EcCCccc-cc
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-TRS-EF-SE---EELT-SVVLMKNGRKVVCGSQSGTVLLY-SWGYFKD-CS 73 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~-~~~-~~-~~---~~v~-~~~~~~~~~~l~~~~~d~~i~~w-d~~~~~~-~~ 73 (203)
..|+|+.+..-+. .++.|+++.+.... +.+ .. .. ..|+ .+..-..+..+.+.+.||-|.-| |++..+. .+
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l 306 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHL 306 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcc
Confidence 4689998877665 67888887653221 111 11 11 1121 11122345667788888888776 5543222 11
Q ss_pred ---eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 74 ---DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 74 ---~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
+.++- ....+..+ -..+.+.+++-...|.+.++.....+.+..-+.- + .+..++++|++.+|++-. .|.|++
T Consensus 307 ~h~R~f~l-~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-~-~~~~~~~Sp~~~~Ll~e~-~gki~~ 382 (733)
T COG4590 307 NHIRNFKL-APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-Q-APQLVAMSPNQAYLLSED-QGKIRL 382 (733)
T ss_pred eeeecccc-CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-c-CcceeeeCcccchheeec-CCceEE
Confidence 12221 22333333 2334456777788888887764443333222222 3 466789999999988754 578999
Q ss_pred EeCCCcccCCC
Q 028806 150 WDLDDILKGSG 160 (203)
Q Consensus 150 wd~~~~~~~~~ 160 (203)
+.+++..++-.
T Consensus 383 ~~l~Nr~Peis 393 (733)
T COG4590 383 AQLENRNPEIS 393 (733)
T ss_pred EEecCCCCCcc
Confidence 99998877744
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.087 Score=44.95 Aligned_cols=139 Identities=15% Similarity=0.119 Sum_probs=79.2
Q ss_pred CeEEEEEcC--CCeE-----EEeecCCccceEEEEEee---CCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce--
Q 028806 17 GTLSVCNLR--KNTV-----QTRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV-- 84 (203)
Q Consensus 17 ~~i~vw~~~--~~~~-----~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v-- 84 (203)
|.+.||++. .|+. +...+.....+.-+.|.| +.-++..+..++.+++..+... ....+.+ |...+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra--~~~l~rs-Hs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA--LRSLFRS-HSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH--HHHHHHh-cCCCccc
Confidence 567899876 2332 222233334455556654 5556666677888888766432 2233333 43222
Q ss_pred --------eEE--EeeCCCEEEEEcCCCcEEEEEcc-CC----ceeeeeccCCCCceEEEEEeCC-------C--CeEEE
Q 028806 85 --------DAL--LKLDEDRVITGSENGLISLVGIL-PN----RIIQPIAEHSEYPIESLALSHD-------R--KFLGS 140 (203)
Q Consensus 85 --------~~~--~~~~~~~l~~~~~d~~i~~~d~~-~~----~~~~~~~~~~~~~i~~i~~~~~-------~--~~l~~ 140 (203)
.-+ .+|||+.++.++.||.+++|.+. +| .++..++.|.+.+-.|.-++.+ + .++++
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 222 59999999999999999998764 23 3445556665333333223322 1 23344
Q ss_pred Ee-CCCcEEEEeCCCcccC
Q 028806 141 IS-HDSMLKLWDLDDILKG 158 (203)
Q Consensus 141 ~~-~d~~i~iwd~~~~~~~ 158 (203)
++ .+..+++|.....++-
T Consensus 310 ttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cccCCcceeEeeccchhhh
Confidence 44 4667999986655443
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.21 Score=25.70 Aligned_cols=31 Identities=6% Similarity=0.033 Sum_probs=25.4
Q ss_pred cceEEEEEeeCC---CEEEEecCCCeEEEEEcCC
Q 028806 38 EELTSVVLMKNG---RKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 38 ~~v~~~~~~~~~---~~l~~~~~d~~i~~wd~~~ 68 (203)
+.|+++.|+|.. .+|+.+-..+.+.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 4888888889999999984
|
It contains a characteristic DLL sequence motif. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.98 Score=33.49 Aligned_cols=101 Identities=13% Similarity=0.227 Sum_probs=59.1
Q ss_pred eCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee---------
Q 028806 47 KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ--------- 116 (203)
Q Consensus 47 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--------- 116 (203)
..++.|+.|+.+| ++++++.......... ....|..+ .-|+-+.+++-+. +.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---ecceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccccc
Confidence 3577899998888 8999984322332222 23347888 6676666666544 899999987543322
Q ss_pred ------eeccCCCCceEEEE--EeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028806 117 ------PIAEHSEYPIESLA--LSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 117 ------~~~~~~~~~i~~i~--~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+... . .+..++ -.+.+ .+|+++ ..+.|.+|.....
T Consensus 80 ~~~~~~~~~~~-~-~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~ 124 (275)
T PF00780_consen 80 SRSLPTKLPET-K-GVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDP 124 (275)
T ss_pred ccccccccccc-C-CeeEEeeccccccceEEEEE-ECCEEEEEEEECC
Confidence 11111 1 344444 12233 444444 4568998888663
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.5 Score=32.53 Aligned_cols=112 Identities=13% Similarity=-0.002 Sum_probs=68.3
Q ss_pred eEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEE-EEcCCCcEEEEEccCCcee
Q 028806 40 LTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNRII 115 (203)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~-~~~~d~~i~~~d~~~~~~~ 115 (203)
...+.|..++.++-+.+.-| .|+.+|+.+ ++......- ......= ...-+..|+ ..-.++...+||..+-+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l--~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPL--PPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE---TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEEC--CccccceeEEEECCEEEEEEecCCeEEEEccccceEE
Confidence 45677878888888887765 788888875 344333322 1122111 222233444 4455888999999998888
Q ss_pred eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 116 QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 116 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.++....+ -+.++ .++..|+.......|+++|..+....
T Consensus 124 ~~~~y~~E--GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 124 GTFPYPGE--GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp EEEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred EEEecCCc--ceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 88866533 35666 46777777777788999998877654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.8 Score=33.43 Aligned_cols=145 Identities=11% Similarity=0.008 Sum_probs=74.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe-EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 78 (203)
.+.|++.+++++.. |.+..-.-..++ -..........++++.+.++++.++++ ..|.+++=... .+........
T Consensus 179 ~~~~~g~~v~~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d-~G~sW~~~~~~~ 255 (334)
T PRK13684 179 RRSPDGKYVAVSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD-DLESWSKPIIPE 255 (334)
T ss_pred EECCCCeEEEEeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC-CCCccccccCCc
Confidence 34566655555543 544332111122 111122334578899999988877765 45665432222 2333332221
Q ss_pred c-CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc--CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 79 L-SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 79 ~-~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. ....+..+ +.|++..++ ++.+|.|. .....++.-..... ......+.+.|..+++.+++ +..|.|..|+-
T Consensus 256 ~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 256 ITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred cccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 0 11235666 677766554 45566554 34444444333322 11125778888777666554 55788877753
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.40 E-value=2.9 Score=35.83 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=48.6
Q ss_pred ceeEE-EeeCCCEEEEEcCCCcEEEEEcc----------CCcee---ee-------eccCCCCceEEEEEeCC---CCeE
Q 028806 83 SVDAL-LKLDEDRVITGSENGLISLVGIL----------PNRII---QP-------IAEHSEYPIESLALSHD---RKFL 138 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~d~~i~~~d~~----------~~~~~---~~-------~~~~~~~~i~~i~~~~~---~~~l 138 (203)
.|..+ ++|+|.+++..+..|.+ |..+. .|+.. .+ +..+....|..+.|+|. +.+|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 45666 79999999988887643 33331 11111 11 11122237889999996 5899
Q ss_pred EEEeCCCcEEEEeCCCcc
Q 028806 139 GSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~ 156 (203)
++-..|+.|++||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 999999999999996443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.39 E-value=2.8 Score=35.62 Aligned_cols=141 Identities=11% Similarity=0.021 Sum_probs=83.6
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeE------EEeec--C--------------CccceEEEEEee--CCCEEEEecCCCeEE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTV------QTRSE--F--------------SEEELTSVVLMK--NGRKVVCGSQSGTVL 62 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~------~~~~~--~--------------~~~~v~~~~~~~--~~~~l~~~~~d~~i~ 62 (203)
.++|+.+. .+.|.||++..-.. ...+. . -.-.|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666654 58899999864211 11110 0 011244444332 346788899999999
Q ss_pred EEEcCCcc----------c---------cceeeeccCCCceeEE-Ee--eCCCEEEEEcCCCcEEEEEccCCcee----e
Q 028806 63 LYSWGYFK----------D---------CSDRFVGLSPNSVDAL-LK--LDEDRVITGSENGLISLVGILPNRII----Q 116 (203)
Q Consensus 63 ~wd~~~~~----------~---------~~~~~~~~~~~~v~~~-~~--~~~~~l~~~~~d~~i~~~d~~~~~~~----~ 116 (203)
+|.+..-- . +...+. -....+.+ ++ ...++||+++....|.|+-+...... .
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 99763100 0 111111 23467778 66 67788888888888888876542111 1
Q ss_pred eeccCCCCceEEEEEeCCC---C---eEEEEeCCCcEEEEeC
Q 028806 117 PIAEHSEYPIESLALSHDR---K---FLGSISHDSMLKLWDL 152 (203)
Q Consensus 117 ~~~~~~~~~i~~i~~~~~~---~---~l~~~~~d~~i~iwd~ 152 (203)
... + ...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 206 s~~-~-~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQ-H-SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccc-c-ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111 2 2268889997743 2 6778888999988887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.61 Score=36.98 Aligned_cols=75 Identities=9% Similarity=0.160 Sum_probs=51.6
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCC-C----------------CeE-EEEeCC
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD-R----------------KFL-GSISHD 144 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~-~----------------~~l-~~~~~d 144 (203)
+.++ .+|.+.+.++...-|.|.++|+..+..+..+++-.+..+.-+..... . .+| +-+-.-
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 4556 68999999998888999999999998888887765432222221111 1 122 244468
Q ss_pred CcEEEEeCCCcccC
Q 028806 145 SMLKLWDLDDILKG 158 (203)
Q Consensus 145 ~~i~iwd~~~~~~~ 158 (203)
|.|.||.++++..-
T Consensus 390 g~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 390 GILEVWSMRQGPRV 403 (415)
T ss_pred CeEEEEecCCCCEE
Confidence 89999999887654
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.72 Score=40.71 Aligned_cols=115 Identities=8% Similarity=-0.056 Sum_probs=68.3
Q ss_pred cceEEEEEeeCCCEEEE--ecCCCeEEEEEcCCcccc----ceeeec-----cCCCceeEE-EeeCCCE-EEEEcCCCcE
Q 028806 38 EELTSVVLMKNGRKVVC--GSQSGTVLLYSWGYFKDC----SDRFVG-----LSPNSVDAL-LKLDEDR-VITGSENGLI 104 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~--~~~d~~i~~wd~~~~~~~----~~~~~~-----~~~~~v~~~-~~~~~~~-l~~~~~d~~i 104 (203)
.++..+...+|+...++ .+.+-.|+.||+...... ...+.. .......++ |+|.-.. .+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35566666777765444 334458999999642111 111111 011223444 7765433 3455568888
Q ss_pred EEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 105 SLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 105 ~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
++..+... .....+... ...++++|+|.|..++.|-..|++.-|...-
T Consensus 181 ~V~~~~~~~~~v~s~p~t--~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVT--NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhhcccCcc--cceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 87765432 222333332 2689999999999999999999999886543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.11 E-value=3.7 Score=35.97 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=83.0
Q ss_pred eEEEEEcCCCeEEEeecCC-c---cceEEEEEeeC-CCEEEEecC----------CCeEEEEEcCCccccceeeec-cCC
Q 028806 18 TLSVCNLRKNTVQTRSEFS-E---EELTSVVLMKN-GRKVVCGSQ----------SGTVLLYSWGYFKDCSDRFVG-LSP 81 (203)
Q Consensus 18 ~i~vw~~~~~~~~~~~~~~-~---~~v~~~~~~~~-~~~l~~~~~----------d~~i~~wd~~~~~~~~~~~~~-~~~ 81 (203)
.++++|-.+-+.+...+.. . ..+.++.|..| +.++++|.. .|.|.+|.+.. ...++.+.. .-.
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVK 829 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeec
Confidence 3667776655444332211 1 23455557776 566666642 47888888764 233333221 024
Q ss_pred CceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 82 NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+.++.--+|++++. -...|++|+..+.+.+..-..+.. ++..+...-.|..+++|..-+.|.+...+..+
T Consensus 830 Gav~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~-~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 830 GAVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISN-PIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred cceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccC-CeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 5566663335666554 445799999888766655555534 78888888899999999988888777665544
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=93.75 E-value=3.9 Score=35.36 Aligned_cols=110 Identities=8% Similarity=0.063 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc--------eEEEEEee----------------CCCEEEEecCCCeEE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE--------LTSVVLMK----------------NGRKVVCGSQSGTVL 62 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~d~~i~ 62 (203)
+..|+.++.++.|.-.|..+|+.+..+...... .+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777788899999999999988776532210 12233321 234778888899999
Q ss_pred EEEcCCccccceeeeccCCCce-------------eEE-Eee--CCCEEEEEcC----------CCcEEEEEccCCceee
Q 028806 63 LYSWGYFKDCSDRFVGLSPNSV-------------DAL-LKL--DEDRVITGSE----------NGLISLVGILPNRIIQ 116 (203)
Q Consensus 63 ~wd~~~~~~~~~~~~~~~~~~v-------------~~~-~~~--~~~~l~~~~~----------d~~i~~~d~~~~~~~~ 116 (203)
-.|..+. +.+..+.. .+.+ ..+ ..| .+..+++++. .|.|+-+|+.+|+.+.
T Consensus 274 ALDA~TG-k~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTG-KLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCC-CEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 9998764 43333221 1110 011 112 2345555542 5889999999998876
Q ss_pred eec
Q 028806 117 PIA 119 (203)
Q Consensus 117 ~~~ 119 (203)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=3.6 Score=34.35 Aligned_cols=144 Identities=11% Similarity=0.026 Sum_probs=75.5
Q ss_pred CCEEEEEcCC------CeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCC------CeEEEEEcCCcccc
Q 028806 7 AMKLLGTSGD------GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDC 72 (203)
Q Consensus 7 ~~~l~~~~~d------~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~ 72 (203)
+.+++.|+.. ..+..+|..++.... .+.... .-.+++.. ++...++|+.+ .++..||.... .
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~--~ 360 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN--Q 360 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC--c
Confidence 4566777766 357788887763322 222212 22333333 45777888888 35777887642 2
Q ss_pred ceeeeccCCCce-eEEEeeCCCEEEEEcCCCc-----EEEEEccCCceeeeeccCCCCceEEE-EEeCCCCeEEEEeCCC
Q 028806 73 SDRFVGLSPNSV-DALLKLDEDRVITGSENGL-----ISLVGILPNRIIQPIAEHSEYPIESL-ALSHDRKFLGSISHDS 145 (203)
Q Consensus 73 ~~~~~~~~~~~v-~~~~~~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~i~~i-~~~~~~~~l~~~~~d~ 145 (203)
+..+..-..... ..+..-+|.+.++|+.+|. |-.||..+.+-...-... . +.... .-.-+|...++||.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-~-~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-T-RRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC-c-ceeeeEEEEECCEEEEEcCcCC
Confidence 433322011111 1123557888888888864 667887665432221111 1 12222 2223677777777444
Q ss_pred ------cEEEEeCCCcc
Q 028806 146 ------MLKLWDLDDIL 156 (203)
Q Consensus 146 ------~i~iwd~~~~~ 156 (203)
.+..||..+..
T Consensus 439 ~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNT 455 (571)
T ss_pred CccccceEEEEcCCCCc
Confidence 46677765543
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.48 Score=23.75 Aligned_cols=31 Identities=35% Similarity=0.365 Sum_probs=23.5
Q ss_pred ccCCEEEEE-cCCCeEEEEEcCCCeEEEeecC
Q 028806 5 ADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEF 35 (203)
Q Consensus 5 p~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~ 35 (203)
|++++|+++ ..+++|.++|..++..+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 677766554 4578999999988887776664
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=93.51 E-value=3.2 Score=33.12 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=25.3
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.|.+++..+..+.|++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 489999999889999999999999999975
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.3 Score=36.37 Aligned_cols=108 Identities=10% Similarity=0.022 Sum_probs=63.0
Q ss_pred Cccccc----CCEEEEEcCCCeEEEEEcCC-----CeEEEeecCC---c--cceEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028806 1 MTFAAD----AMKLLGTSGDGTLSVCNLRK-----NTVQTRSEFS---E--EELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~----~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~---~--~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 66 (203)
+.|.|- ...|++.-....|.||.+.. ++.+..-..+ . --...+.|+|....|++-.....-.++++
T Consensus 62 lsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV 141 (671)
T PF15390_consen 62 LSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSV 141 (671)
T ss_pred eeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeee
Confidence 357764 22344445558899999852 2222211111 1 11245789999888877666555556666
Q ss_pred CCccccceeeeccCCCceeEE-EeeCCCEEEEEcCC-CcEEEEEc
Q 028806 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN-GLISLVGI 109 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~~i~~~d~ 109 (203)
+.....+..-.. ..+.|.|. |.+||+.|+++-.. =.-++||-
T Consensus 142 ~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 142 HCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 543333322223 46778777 99999998876543 23567874
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=93.31 E-value=3.8 Score=33.39 Aligned_cols=135 Identities=13% Similarity=0.044 Sum_probs=62.8
Q ss_pred CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCc---eeEE-EeeC
Q 028806 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNS---VDAL-LKLD 91 (203)
Q Consensus 16 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---v~~~-~~~~ 91 (203)
...+.++|.. |..+..+.........+...++|.+++... ..++.+|+. ++.+..... .... -..+ .-|+
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l-~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDL-PGGYYDFHHDIDELPN 200 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE---TTEE-B-S-EEE-TT
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--CCEEEeeec-CCcccccccccEECCC
Confidence 3455566643 444444433222221156678888887665 778888875 454444433 2221 2334 5778
Q ss_pred CCEEEEEcC-------------CCcEEEEEccCCceeeeecc--C-----------------------CC-CceEEEEEe
Q 028806 92 EDRVITGSE-------------NGLISLVGILPNRIIQPIAE--H-----------------------SE-YPIESLALS 132 (203)
Q Consensus 92 ~~~l~~~~~-------------d~~i~~~d~~~~~~~~~~~~--~-----------------------~~-~~i~~i~~~ 132 (203)
|++|+.+.. .-.|..+| .+|+.+..+.. | .+ ..+.++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 888887761 11244444 55554433210 0 00 257899999
Q ss_pred C-CCCeEEEEeCCCcEEEEeCCCccc
Q 028806 133 H-DRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 133 ~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+ ++.+|+++-.-..|...|.+++..
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcE
Confidence 9 555555555556788888666543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.7 Score=31.91 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=22.1
Q ss_pred ceEEEEEeeCC------CEEEEecCCCeEEEEEcC
Q 028806 39 ELTSVVLMKNG------RKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 39 ~v~~~~~~~~~------~~l~~~~~d~~i~~wd~~ 67 (203)
.+..++|+|.| -+|++.+.++.|.+|.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 67888898854 367778888888888754
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=93.12 E-value=5.1 Score=34.80 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=70.9
Q ss_pred ccceEEEEEee-CCCEEEEecCCCeEEEEEcCCc----cccceeeeccCCC----------ceeEE-EeeCCCEEEEEcC
Q 028806 37 EEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYF----KDCSDRFVGLSPN----------SVDAL-LKLDEDRVITGSE 100 (203)
Q Consensus 37 ~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~----------~v~~~-~~~~~~~l~~~~~ 100 (203)
..+...++|+| +...|++....|...||++... ...+..... ..+ ....+ |.++.+.|+.++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~-~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN-ISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccC-CCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 34677899998 4468999999999999999211 111111111 111 12244 7777777777665
Q ss_pred CCcEEEEEccCCceee-eeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 028806 101 NGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 101 d~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~ 154 (203)
. .+.++|+.+..... .....+...|..+.-+|.. .+++.. +...|...++..
T Consensus 224 ~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 224 S-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred C-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 4 57899998776533 3333223378888888873 233333 346788888876
|
These proteins are found in fungi. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.11 E-value=2.9 Score=37.68 Aligned_cols=139 Identities=12% Similarity=0.176 Sum_probs=78.4
Q ss_pred cCCCeEEEEEcCCCeEEEeecCCccceEEEEEe-e-------CCCEEEEecCCCeEEEEEcCCcc--ccceee------e
Q 028806 14 SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-K-------NGRKVVCGSQSGTVLLYSWGYFK--DCSDRF------V 77 (203)
Q Consensus 14 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~-~-------~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~------~ 77 (203)
+-|+.+.+|++.++.....+.+....|..+..- | .=+++.+...--.|.++-+.... .....+ .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 357899999999866666666555555555432 2 22333333333445555442111 111111 1
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEE--EEEccCC---c-e----------------eeeeccCCCCceEEEEEeCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLIS--LVGILPN---R-I----------------IQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~--~~d~~~~---~-~----------------~~~~~~~~~~~i~~i~~~~~ 134 (203)
. ..-.|.++ ...+|+.+++|-. |.|+ +|....+ + + +..+.+....+|..+.....
T Consensus 176 ~-dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 V-DGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred c-CCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 1 24457777 5667776666544 4333 1222211 1 1 11122122338999999888
Q ss_pred CCeEEEEeCCCcEEEEeCCC
Q 028806 135 RKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~ 154 (203)
...+.+-+..++|.+|++..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88999999999999999977
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.10 E-value=2.4 Score=32.71 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=30.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE---EEee----cCCccceEEEEEeeC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRS----EFSEEELTSVVLMKN 48 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~---~~~~----~~~~~~v~~~~~~~~ 48 (203)
|+|.|+|+++++ ...|.|++++ ..+.. +..+ ......+..++++|+
T Consensus 7 ~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 7 MAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred EEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 579999987776 4589999999 43332 2222 223457899999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=92.85 E-value=1.9 Score=35.64 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=42.6
Q ss_pred eCCCEEEEecCCCeEEEEEcCC---ccccceee-----------ecc---C-------CCceeEE-Eee----CCCEEEE
Q 028806 47 KNGRKVVCGSQSGTVLLYSWGY---FKDCSDRF-----------VGL---S-------PNSVDAL-LKL----DEDRVIT 97 (203)
Q Consensus 47 ~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~-----------~~~---~-------~~~v~~~-~~~----~~~~l~~ 97 (203)
++...++.+..||.+....... .+..+... .+. . ......+ .++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677888888899888887753 11111111 000 0 1222333 344 6789999
Q ss_pred EcCCCcEEEEEccCCceeeee
Q 028806 98 GSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 98 ~~~d~~i~~~d~~~~~~~~~~ 118 (203)
.+.|+.|++||+.++.++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999885543
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.84 E-value=2.7 Score=34.29 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=48.2
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEE---------ccCCceeeee----------ccCCCCceEEEEEeCCC---CeEEE
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVG---------ILPNRIIQPI----------AEHSEYPIESLALSHDR---KFLGS 140 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d---------~~~~~~~~~~----------~~~~~~~i~~i~~~~~~---~~l~~ 140 (203)
|..+ .++.|..++.++.+|.+.++= ++.|+..-+. ...+.-.+..++|+|+. .+|..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 4455 688999999999998665432 1234322111 11111146788999975 67888
Q ss_pred EeCCCcEEEEeCCCcc
Q 028806 141 ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (203)
-+.|..|++|++....
T Consensus 186 L~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEPT 201 (741)
T ss_pred EecCcEEEEEecCCcc
Confidence 8889999999987654
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=92.74 E-value=4.2 Score=32.44 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=84.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCe-----EEEeecCCccceEEEEEee-----CCCEEEEecCCCeEEEEEcCCcc-c---
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYFK-D--- 71 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~-~--- 71 (203)
+...|++|+..|.++||....+. .+... .-..+|..+..-. ....|++ -.-..+.+|.+.... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34589999999999999986432 22222 2346777776532 2234444 445678888773211 1
Q ss_pred ----cceeeeccCCC--ceeEE----E-eeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 72 ----CSDRFVGLSPN--SVDAL----L-KLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 72 ----~~~~~~~~~~~--~v~~~----~-~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
.+..+.. |.- ....+ | ... ..+|.+-+.||.+.+|+-+.-.....+... - -...+.|.+.-..++
T Consensus 114 g~~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-l-lPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 114 GNQYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF-L-LPGPLCYCPRTDSFV 190 (418)
T ss_pred CcEEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-C-CCcCeEEeecCCEEE
Confidence 1112222 211 11111 3 223 456778889999999986543322333322 1 123578888888899
Q ss_pred EEeCCCcEEEEeCCCcc
Q 028806 140 SISHDSMLKLWDLDDIL 156 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~ 156 (203)
+++.+..|..|......
T Consensus 191 t~sss~~l~~Yky~~La 207 (418)
T PF14727_consen 191 TASSSWTLECYKYQDLA 207 (418)
T ss_pred EecCceeEEEecHHHhh
Confidence 99988899998764433
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.66 E-value=1.6 Score=36.98 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCeEEEEEcCC-------C----e---------EEEeecCCccceEEEEEe--eCCCEEEEecCCCeEEEE
Q 028806 7 AMKLLGTSGDGTLSVCNLRK-------N----T---------VQTRSEFSEEELTSVVLM--KNGRKVVCGSQSGTVLLY 64 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~w 64 (203)
...|+.+..||.|.+|.+.+ . . +...+ .....+++++++ ...+++|+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 35788889999999997631 0 0 01111 124568999998 778889999888888888
Q ss_pred EcCCcc-c-cceeeeccCCCceeEE-Eee-----CCC-EEEEEcCCCcEEEEEc
Q 028806 65 SWGYFK-D-CSDRFVGLSPNSVDAL-LKL-----DED-RVITGSENGLISLVGI 109 (203)
Q Consensus 65 d~~~~~-~-~~~~~~~~~~~~v~~~-~~~-----~~~-~l~~~~~d~~i~~~d~ 109 (203)
-+.... + ....-.. +...|-++ |-+ .|. ++++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~-~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQ-HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccc-cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 665321 1 1111112 44566677 533 233 6778888999988887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.93 Score=32.91 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=38.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK 47 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~ 47 (203)
+...+|++.+++-..++|...|..+|+.+.+++-...+|++++|--
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 3445677777777778999999999999999998899999999964
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.8 Score=22.91 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=24.5
Q ss_pred eCCCEEEEEcC-CCcEEEEEccCCceeeeeccC
Q 028806 90 LDEDRVITGSE-NGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 90 ~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~ 121 (203)
|+++++++++. ++.|.++|..+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 56777777664 778999999888887777654
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.2 Score=36.86 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=41.8
Q ss_pred eCCCEEEEEcCCCcEEEEEccC----Cceeee-----------eccC----------CCCceEEEEEeC----CCCeEEE
Q 028806 90 LDEDRVITGSENGLISLVGILP----NRIIQP-----------IAEH----------SEYPIESLALSH----DRKFLGS 140 (203)
Q Consensus 90 ~~~~~l~~~~~d~~i~~~d~~~----~~~~~~-----------~~~~----------~~~~i~~i~~~~----~~~~l~~ 140 (203)
++...++.+..+|.+....... +..... +.+- .......+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3777888888888887776553 211111 0000 011345566666 6789999
Q ss_pred EeCCCcEEEEeCCCccc
Q 028806 141 ISHDSMLKLWDLDDILK 157 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~ 157 (203)
.+.|+.+++||+.++..
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999999887
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=91.76 E-value=6 Score=31.98 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=32.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeec-----CCccceEEEEEeeCC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSE-----FSEEELTSVVLMKNG 49 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~-----~~~~~v~~~~~~~~~ 49 (203)
|+|.|+|++|++--..|.|++++..++. .+..+. ........|+++|+-
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 5789999877776446999999865442 222121 135678999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=91.36 E-value=1 Score=22.29 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=19.7
Q ss_pred cCCccceEEEEEeeCCCEEEEecC-C--CeEEEE
Q 028806 34 EFSEEELTSVVLMKNGRKVVCGSQ-S--GTVLLY 64 (203)
Q Consensus 34 ~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~w 64 (203)
......-....|+|||+.|+.++. + |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334556778899999998876654 4 555444
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.29 E-value=9.2 Score=33.22 Aligned_cols=153 Identities=10% Similarity=-0.025 Sum_probs=86.5
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccce-------------EEEEEee--CCCEEEEecC----------CCeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEEL-------------TSVVLMK--NGRKVVCGSQ----------SGTV 61 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~i 61 (203)
+..|+.++.|+.|.-.|..+|+....+... +.| ..+.-.| .+..+++++. .|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 457888888999999999999888665321 111 0111111 1335555532 5889
Q ss_pred EEEEcCCccccceeeecc----------------CCCceeEE--EeeCCCEEEEEc------------------CCCcEE
Q 028806 62 LLYSWGYFKDCSDRFVGL----------------SPNSVDAL--LKLDEDRVITGS------------------ENGLIS 105 (203)
Q Consensus 62 ~~wd~~~~~~~~~~~~~~----------------~~~~v~~~--~~~~~~~l~~~~------------------~d~~i~ 105 (203)
+-+|+.+.+... .+... ....++.. +.+...+++.+. ..+.|.
T Consensus 339 ~A~Da~TGkl~W-~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 339 RAFDVNTGALVW-AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEECCCCcEee-EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 999997643322 22110 01122222 344444444322 124566
Q ss_pred EEEccCCceeeeecc-CCC-------CceEEEEEeC-CCC---eEEEEeCCCcEEEEeCCCcccCCCC
Q 028806 106 LVGILPNRIIQPIAE-HSE-------YPIESLALSH-DRK---FLGSISHDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 106 ~~d~~~~~~~~~~~~-~~~-------~~i~~i~~~~-~~~---~l~~~~~d~~i~iwd~~~~~~~~~~ 161 (203)
-.|+++|+....++. |.+ ....-+.+.. +|+ .++.++.+|.++++|-++++..-..
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 778889988877754 221 0111122322 553 6888889999999999998765443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=6.9 Score=31.10 Aligned_cols=108 Identities=8% Similarity=0.001 Sum_probs=58.5
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc-----ceeeecc-CCCceeEE-EeeCCCEEEEEcCCCcEEEEEc
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-----SDRFVGL-SPNSVDAL-LKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-----~~~~~~~-~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~ 109 (203)
...+..+.|.+++..++++ ..|.+..= .. .+.. +...... ....+..+ |.+++..+ .++..|.+... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d-~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s-~ 354 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYVS-KG-TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRS-T 354 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEEe-cC-CCCcccccceeecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEe-C
Confidence 4568899999998887766 45654432 22 1221 1222110 11246667 66666654 45566765444 3
Q ss_pred cCCceeeeeccCC--CCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 110 LPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 110 ~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
..|+.-....... ....+.+.|.++++.+++| .+|.|.-|
T Consensus 355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 3444433332111 2268899988776655554 57776654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.84 E-value=6.2 Score=30.43 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=51.3
Q ss_pred ceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceee----eccCCCceeEE-EeeC---CCEEEEEcC-C-------
Q 028806 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF----VGLSPNSVDAL-LKLD---EDRVITGSE-N------- 101 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~----~~~~~~~v~~~-~~~~---~~~l~~~~~-d------- 101 (203)
..+.|+|.|+++.+++ ...|.|++++..... ..+..+ .. .......+ ++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~-~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFAD-GERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTS-TTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceeccccccccc-ccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987776 459999999833211 111111 11 23445666 7773 344443332 1
Q ss_pred -CcEEEEEccCC-------cee-eeecc--CCCCceEEEEEeCCCCeEEEEeC
Q 028806 102 -GLISLVGILPN-------RII-QPIAE--HSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 102 -~~i~~~d~~~~-------~~~-~~~~~--~~~~~i~~i~~~~~~~~l~~~~~ 143 (203)
..|.-|.+..+ +.+ ..+.. ........|.|.|+|.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 13443444332 111 12222 11124577999999976665553
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=90.81 E-value=1.2 Score=22.04 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=18.3
Q ss_pred ceEEEEEeCCCCeEEEEe-CC--CcEEEE
Q 028806 125 PIESLALSHDRKFLGSIS-HD--SMLKLW 150 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~-~d--~~i~iw 150 (203)
......|+|||++|+.++ .+ |...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 567899999999888666 44 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=90.76 E-value=4 Score=28.15 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=25.6
Q ss_pred ceEEEEEeCCC------CeEEEEeCCCcEEEEeCCCcc
Q 028806 125 PIESLALSHDR------KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 125 ~i~~i~~~~~~------~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.+..++|||-| -.|++.+.++.|.||......
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~ 124 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP 124 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc
Confidence 68899999943 357888899999999876543
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.28 Score=42.08 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=63.2
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEE-----------EEeeCCCEEEEecCCCeEEEEEcCCcc----
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSV-----------VLMKNGRKVVCGSQSGTVLLYSWGYFK---- 70 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~d~~i~~wd~~~~~---- 70 (203)
+.-++.++-.+++|++..+.+... ..+..|..++..+ ..+|||..|+..+.||.+++|.+-..+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~ 272 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVH 272 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccH
Confidence 445677777888998887764321 2333454443322 268999999999999998888764322
Q ss_pred ccceeeeccCCCcee-EE-EeeCC---------CEEEEEc-CCCcEEEEEccCCcee
Q 028806 71 DCSDRFVGLSPNSVD-AL-LKLDE---------DRVITGS-ENGLISLVGILPNRII 115 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~-~~-~~~~~---------~~l~~~~-~d~~i~~~d~~~~~~~ 115 (203)
.++...+. |..... |. |+.+. .++++++ .++-+++|.....+++
T Consensus 273 rclhewkp-hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 273 RCLHEWKP-HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhhhccCC-CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 34445555 553322 22 33221 1233333 3556888886655554
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=90.64 E-value=7.5 Score=31.03 Aligned_cols=58 Identities=9% Similarity=0.087 Sum_probs=40.9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
.+++..+ .||++++++.-..+|.+.+....-.+.+..+..........|.|.-++..+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 3567778 899999999999999998887655555555544433355677787665433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=8.5 Score=31.39 Aligned_cols=102 Identities=11% Similarity=-0.042 Sum_probs=50.8
Q ss_pred CCEEEEEcCC-----CeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCC--CeEEEEEcCCccccceeee
Q 028806 7 AMKLLGTSGD-----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 7 ~~~l~~~~~d-----~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~ 77 (203)
+..+++|+.+ ..+..||..++.-.. .+....... ++ ..-++...+.|+.+ ..+..||... ..+..+.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~--n~W~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGD--AAWVNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCC--CeEEECC
Confidence 3445666643 246678877654322 221111111 12 23466677777753 3577787642 2233222
Q ss_pred ccCCCcee--EEEeeCCCEEEEEcCCC---cEEEEEccCCc
Q 028806 78 GLSPNSVD--ALLKLDEDRVITGSENG---LISLVGILPNR 113 (203)
Q Consensus 78 ~~~~~~v~--~~~~~~~~~l~~~~~d~---~i~~~d~~~~~ 113 (203)
. -..+.. ++..-+|...+.|+.++ .+..||..+.+
T Consensus 348 ~-l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 348 S-LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred C-CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 2 111111 12345677777777543 46678877654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.27 E-value=8.6 Score=29.71 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=58.5
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII 115 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 115 (203)
...+..+.+.|++.+++++. .|.+..- ....+.............+..+ +.+++..++++ ..|.+.+-....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 34678888888887666554 4544431 1112233333332034566777 78888876665 4566643223333322
Q ss_pred eeeccC---CCCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 116 QPIAEH---SEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 116 ~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
.....+ ....+..+.+.|++..+++ +.+|.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~ 283 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL 283 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE
Confidence 221111 1225788999998775554 4566554
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=89.10 E-value=4.8 Score=26.55 Aligned_cols=110 Identities=16% Similarity=0.118 Sum_probs=61.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCe--------EEEeecCCccceEEEEEee-----CCCEEEEecCCCeEEEEEcCCc
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNT--------VQTRSEFSEEELTSVVLMK-----NGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
|......|++++.-|.|.|++..... .+..+. -...|++|+-.+ ....|+.|+. ..+..||+...
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 44555678888888999999876321 222332 245577776544 2345666654 57999999754
Q ss_pred cccceeeeccCCCceeEE-E---eeCCCEEEEEcCCCcEEEEEccCCceeee
Q 028806 70 KDCSDRFVGLSPNSVDAL-L---KLDEDRVITGSENGLISLVGILPNRIIQP 117 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~---~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 117 (203)
..... +. -...+.++ + .....-++..+.+..|.-||.+-.+...+
T Consensus 84 ~d~Fy--ke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 84 SDLFY--KE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred chhhh--hh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 33322 11 23455555 3 22223344444556677777544444433
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=88.90 E-value=4.8 Score=35.15 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=41.2
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCC-----eEEEEEcCCccccceeee
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSG-----TVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~i~~wd~~~~~~~~~~~~ 77 (203)
+.|.+-|.........-..+..+|.+.+|+|||+.|+. .+..+ .|++-++.+.+.-+..+.
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee
Confidence 57888888765443331345778999999999999987 44333 588888876554433443
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=88.73 E-value=10 Score=29.75 Aligned_cols=102 Identities=16% Similarity=0.129 Sum_probs=53.0
Q ss_pred cceEEEEEeeCCCEEEEec-----------CCC-eEEEEEcCC-cccc--ceeeeccCCCceeEE-EeeCCCEEEEEcCC
Q 028806 38 EELTSVVLMKNGRKVVCGS-----------QSG-TVLLYSWGY-FKDC--SDRFVGLSPNSVDAL-LKLDEDRVITGSEN 101 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~~wd~~~-~~~~--~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d 101 (203)
.....|+|.++|+++++.. ..+ .|.+++-.. .+.. ...+.. .......+ +.+++ +++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEeCCC
Confidence 4466789999999877753 223 666665422 1221 233333 33344666 67777 4444444
Q ss_pred CcEEEEEccC-----Cce--e-eeeccC---CCCceEEEEEeCCCCeEEEEe
Q 028806 102 GLISLVGILP-----NRI--I-QPIAEH---SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 102 ~~i~~~d~~~-----~~~--~-~~~~~~---~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..+++.+... ++. + ..+... .......+.|.|+|.+.++.+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4333434321 111 1 112221 012467899999998766544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.54 E-value=3.9 Score=32.85 Aligned_cols=95 Identities=12% Similarity=0.115 Sum_probs=57.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
+.||+|.+.||+--.+.+|.+++....+.. .+.+.....|....|+.+ .-++.....| +.+|-+......++..
T Consensus 72 IkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlV 149 (657)
T KOG2377|consen 72 IKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLV 149 (657)
T ss_pred EEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhh
Confidence 469999999999999999999998543322 222334456888899865 4455444333 6667665444444444
Q ss_pred eccCCCce-eEEEeeCCCEEEEE
Q 028806 77 VGLSPNSV-DALLKLDEDRVITG 98 (203)
Q Consensus 77 ~~~~~~~v-~~~~~~~~~~l~~~ 98 (203)
+. +.-.| |-+|.++.+.++.+
T Consensus 150 ks-~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 150 KS-HNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hh-cccCccEEEEccccceEeee
Confidence 44 44333 23355555544433
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=87.90 E-value=1.8 Score=20.27 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=20.4
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEee
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRS 33 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~ 33 (203)
.++.++.++.+..+|..+|+.+...
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6777888999999999988876543
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=87.66 E-value=12 Score=29.31 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=76.6
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCc--cceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC-cee
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE--EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-SVD 85 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~v~ 85 (203)
.+..+..+|.|.-.|..++..+....... ..+..-.+..+|+ ++.++.++.++.+|..+ +..+-.... ... .+.
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~-~~~~~~~ 146 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNV-GGSPYYA 146 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEec-CCCeEEe
Confidence 45555678888888888887665443321 2333333334665 67777888888888853 444444443 221 011
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC--CCceEEEEEeCCCCeEEEEeC--CCcEEEEeCCCcccC
Q 028806 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS--EYPIESLALSHDRKFLGSISH--DSMLKLWDLDDILKG 158 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~ 158 (203)
...-.....++.++.++.+...+..+|..+....... ...+..-.. .....++.+.. ++.+.-.|..++...
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEe
Confidence 1111123344444467888888888887766643321 101111111 12233444443 456666777666544
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=87.55 E-value=8.5 Score=27.62 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=35.3
Q ss_pred CEEEEEcCCCeEEEEEcCC--CeEEEeecCCccceEEEEEeeCCCEEEEec
Q 028806 8 MKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKNGRKVVCGS 56 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 56 (203)
..|+.+.....|.+|++.+ .+.+..+..- +.|..+.++..|.+|++--
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEE
Confidence 4554445557899999883 3455566543 7899999999999999853
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=86.94 E-value=2.4 Score=20.91 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=23.2
Q ss_pred EEEEEcCCCcEEEEEccCCceeeeeccC
Q 028806 94 RVITGSENGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 94 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 121 (203)
.++.++.+|.|.-+|..+|+.+..+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566789999999999999998877654
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.91 E-value=11 Score=28.31 Aligned_cols=149 Identities=11% Similarity=-0.012 Sum_probs=86.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--c
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG--L 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~ 79 (203)
+-.|||..-+++...+.|--.|..+++....-.+.......|..-||+..-++-+.. -|.-.|-++ ..+..|.- .
T Consensus 68 apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt--~evt~f~lp~~ 144 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT--LEVTRFPLPLE 144 (353)
T ss_pred ccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcc--cceEEeecccc
Confidence 345677766777666777777777777655444555566777788888766654333 344444432 12222221 0
Q ss_pred -CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 80 -SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 -~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
........ |.+.|++.+++... .---.|.. ...+..+....+..-+.|+-.|+|..-++.-.+..|-..|..++
T Consensus 145 ~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 145 HADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred cCCCcccceeeCCCccEEEeeccc-cceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence 12334444 89999888887632 11111211 12344444443335677888999987777667777777776655
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=86.08 E-value=2.8 Score=20.64 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=22.5
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecC
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEF 35 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~ 35 (203)
.++.++.+|.|+-.|..+|+.+...+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456668999999999999999887754
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.78 E-value=3.6 Score=33.58 Aligned_cols=67 Identities=7% Similarity=0.034 Sum_probs=42.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEc---------CCCeEEEee----------c-CCccceEEEEEeeCC---CEEEEecCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNL---------RKNTVQTRS----------E-FSEEELTSVVLMKNG---RKVVCGSQS 58 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~---------~~~~~~~~~----------~-~~~~~v~~~~~~~~~---~~l~~~~~d 58 (203)
..|+.|..++-++.+|.+.++-. ..|+..-.. . ...-.+...+|+|+. ..|..-+.|
T Consensus 110 l~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sd 189 (741)
T KOG4460|consen 110 LLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSD 189 (741)
T ss_pred EecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecC
Confidence 35788888888888886554431 123211111 1 112245678899976 567777789
Q ss_pred CeEEEEEcCC
Q 028806 59 GTVLLYSWGY 68 (203)
Q Consensus 59 ~~i~~wd~~~ 68 (203)
..+++|++..
T Consensus 190 nviRiy~lS~ 199 (741)
T KOG4460|consen 190 NVIRIYSLSE 199 (741)
T ss_pred cEEEEEecCC
Confidence 9999999864
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=85.74 E-value=4 Score=29.23 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=35.7
Q ss_pred CEEEEEcCCCcEEEEEccC--CceeeeeccCCCCceEEEEEeCCCCeEEEEeC
Q 028806 93 DRVITGSENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 93 ~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 143 (203)
..|+.+...+.|-+|++.. .+.+..+..- + .|..+.++..|.||++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~-~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-G-RVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-h-heeEEEeccccceEEEEEe
Confidence 4454446677899999883 3455556544 3 7999999999999998653
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=85.57 E-value=14 Score=28.20 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCCEEEEecC-----CCeEEEEEcCCccccceeeeccC-CCceeEE-EeeCCCEEEEEcCCC----cEEEEEccCCc
Q 028806 48 NGRKVVCGSQ-----SGTVLLYSWGYFKDCSDRFVGLS-PNSVDAL-LKLDEDRVITGSENG----LISLVGILPNR 113 (203)
Q Consensus 48 ~~~~l~~~~~-----d~~i~~wd~~~~~~~~~~~~~~~-~~~v~~~-~~~~~~~l~~~~~d~----~i~~~d~~~~~ 113 (203)
++.+.+.|+. ...+..||+.+ ..+..+.... ....... ...++++.+.|+.++ .+.+||+.+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLET--QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCC--CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 5566666664 23577888763 3333332101 1111122 355677777777653 35678887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=85.39 E-value=15 Score=28.29 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=57.3
Q ss_pred EEEEEeeCCCEEEEecCC------CeEEEEEcCCccccceeeec--------------cCCCceeEE-EeeCCCEEEEEc
Q 028806 41 TSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCSDRFVG--------------LSPNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 41 ~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~--------------~~~~~v~~~-~~~~~~~l~~~~ 99 (203)
-+|++.+++.++++.-.+ ..|+.++.. +.....+.. .....+-.+ ++|+|..|+++.
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 477887788888876666 778888764 333333210 023345677 799999766654
Q ss_pred C-----CC--c-------EEE--EEccC-Cceeee--eccC------CCCceEEEEEeCCCCeEEE
Q 028806 100 E-----NG--L-------ISL--VGILP-NRIIQP--IAEH------SEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 100 ~-----d~--~-------i~~--~d~~~-~~~~~~--~~~~------~~~~i~~i~~~~~~~~l~~ 140 (203)
. ++ . +++ ||..+ +..... +... ....|..+.+-+++++|+.
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 3 22 1 444 55444 322222 2222 1347889999999987763
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.11 E-value=24 Score=30.39 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=33.3
Q ss_pred EEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028806 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 19 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 67 (203)
|+|+++. |+++..+......+..+.|+.+. .|++...+|++++|++.
T Consensus 66 I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 66 IRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL 112 (829)
T ss_pred EEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc
Confidence 6666654 45555554444578899998665 56666889999999985
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=85.03 E-value=14 Score=27.81 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=55.4
Q ss_pred CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec------CCCeEEEEEcCCccccceeeecc----CCCcee
Q 028806 16 DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS------QSGTVLLYSWGYFKDCSDRFVGL----SPNSVD 85 (203)
Q Consensus 16 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~~~~~~~~~----~~~~v~ 85 (203)
...|++||..+.+-...-.+-.+.|+.+.|..+.+.++.|. ....+..||+.. ..+..+... -.+++.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcEE
Confidence 45699999887665444445567899999986666666654 345688888863 344444330 135666
Q ss_pred EE-E-eeCCCEEE-EEc-CC--CcEEEEEcc
Q 028806 86 AL-L-KLDEDRVI-TGS-EN--GLISLVGIL 110 (203)
Q Consensus 86 ~~-~-~~~~~~l~-~~~-~d--~~i~~~d~~ 110 (203)
.+ + ..++..+. .|. .+ ..|..||-.
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 66 3 34444343 333 22 346667643
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=84.95 E-value=24 Score=30.36 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=69.8
Q ss_pred CcccccCCEEEEEcCC------CeEEEEEcCCC--eEEEeecCCccceE-EEEEeeCCCEEEEecC---CCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGD------GTLSVCNLRKN--TVQTRSEFSEEELT-SVVLMKNGRKVVCGSQ---SGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------~~i~vw~~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~~wd~~~ 68 (203)
++|++|++.|+.+..+ ..|+.+++.++ +....+........ .+..+.++++++..+. ++.+.+++...
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 4689999877665432 46788888876 33333333223333 2233337776654332 45788888532
Q ss_pred c-cccceeeeccCCCceeEEEeeCCCEEEEEcC----CCcEEEEEcc-CCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 69 F-KDCSDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 69 ~-~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~i~~~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
. +.....+.. .......+.+.. ..++..+. ...|...++. .++....+.......|..+.+. .+..+++..
T Consensus 257 ~~~~~~~~~~~-~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~ 333 (686)
T PRK10115 257 ADAEPFVFLPR-RKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEER 333 (686)
T ss_pred CCCCceEEEEC-CCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEE
Confidence 1 222222222 222223333333 33333332 2234444544 2222222333223357777776 324445555
Q ss_pred CCCcEEEEe
Q 028806 143 HDSMLKLWD 151 (203)
Q Consensus 143 ~d~~i~iwd 151 (203)
.++.-+++-
T Consensus 334 ~~g~~~l~~ 342 (686)
T PRK10115 334 QRGLTSLRQ 342 (686)
T ss_pred eCCEEEEEE
Confidence 566544443
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.93 E-value=15 Score=27.94 Aligned_cols=143 Identities=8% Similarity=0.029 Sum_probs=82.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeE---EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce--eeeccCC
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD--RFVGLSP 81 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~ 81 (203)
+++...+..+.-++|.|+.+... +..+.. .+-..+ |.-.|++..++..+.-+.+.|+.....+.- .... ..
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~lagrya~-~~ 171 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PG 171 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceeeeeecc-CC
Confidence 45666667777899999986532 222221 122233 344688988888666677889865433221 1111 12
Q ss_pred CceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 82 NSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 82 ~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.....+ .-.|++.+.++.++-+.+.|+... .+...-....+..++++..+++.-+++.. +..+.+-|..+..
T Consensus 172 ~d~~~v-~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 172 GDTHDV-AISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred CCceeE-EEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCC
Confidence 222222 446788888889999999998653 22222222222257888887776666544 3446666766555
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.42 E-value=26 Score=30.21 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=31.0
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
.+|+..+|+.-...|.|.+.+....++...+......+-..|+|..+.
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 688888888888889888888776666655543221123355665443
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=84.36 E-value=21 Score=29.11 Aligned_cols=145 Identities=9% Similarity=-0.090 Sum_probs=67.2
Q ss_pred CEEEEEcCC-----CeEEEEEcCCCeEEEeecC---CccceEEEEEeeCCCEEEEecCCC-----eEEEEEcCCccccce
Q 028806 8 MKLLGTSGD-----GTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCSD 74 (203)
Q Consensus 8 ~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~ 74 (203)
++++.|+.+ +.+.+||+.+.+-...-.. ...+....+..-++++++.|+.++ .+..||+.+ ..+.
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t--~~W~ 307 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD--KKWF 307 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCC--CEEE
Confidence 344555543 3577888877543221110 111111122223556666666543 466777653 2222
Q ss_pred eeeccC----CCc-eeEEEeeCCCEEEEEcCC----CcEEEEEccCCceeeeecc---CCCCceEEEEEeCCCCeEEEEe
Q 028806 75 RFVGLS----PNS-VDALLKLDEDRVITGSEN----GLISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 75 ~~~~~~----~~~-v~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
.+.. . ... -..+...++++++.++.+ ..+.+||+.+.+-...-.. .......++ ..-++++++.|+
T Consensus 308 ~~~~-~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG 385 (470)
T PLN02193 308 HCST-PGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGG 385 (470)
T ss_pred eCCC-CCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECC
Confidence 2211 0 000 111223466777776654 4588999887654322111 111111222 223566777777
Q ss_pred CC--------------CcEEEEeCCCcc
Q 028806 143 HD--------------SMLKLWDLDDIL 156 (203)
Q Consensus 143 ~d--------------~~i~iwd~~~~~ 156 (203)
.. ..+.+||+.+..
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCE
Confidence 42 246777776553
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=84.16 E-value=17 Score=28.01 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=18.7
Q ss_pred CeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecC
Q 028806 17 GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQ 57 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~ 57 (203)
..+.+||..+.+-.. .+.. ...........++++++.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~-~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPF-LGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCC-CcCCCceEEEECCEEEEEeee
Confidence 457788877653321 2211 111111222346667777664
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=83.90 E-value=17 Score=27.76 Aligned_cols=115 Identities=11% Similarity=0.080 Sum_probs=66.4
Q ss_pred ceEEEEEeeCCCEEEEecCCCeEEEEEcCC-----cc-ccceeeec----cCCCceeEE-EeeCC------------CEE
Q 028806 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-----FK-DCSDRFVG----LSPNSVDAL-LKLDE------------DRV 95 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----~~-~~~~~~~~----~~~~~v~~~-~~~~~------------~~l 95 (203)
.-+.|+++|.+.+-++....+...+||... .. ..+..+.. ......+.+ |+... ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 457899999888777777788999999851 11 11222221 011233444 54322 236
Q ss_pred EEEcCCCcEEEEEccCCce-----eeeeccCCCCceE-EEEEeC--CCCeEEEEe-CCCcEEEEeCC
Q 028806 96 ITGSENGLISLVGILPNRI-----IQPIAEHSEYPIE-SLALSH--DRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 96 ~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~~~i~-~i~~~~--~~~~l~~~~-~d~~i~iwd~~ 153 (203)
+.++++|+|.-|...-+.. ...+.......|+ .+++.. .+.+|+.+. ..++|.+||-.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 7889999999998543222 1222211122444 355543 356666555 78999999854
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=83.82 E-value=15 Score=27.05 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=62.2
Q ss_pred ccccCCEEEEEcC-C--CeEEEEEcCC----CeEEE---eecCCccceEEEEEeeCCCEEEEecCCC-eEEEEEcCCccc
Q 028806 3 FAADAMKLLGTSG-D--GTLSVCNLRK----NTVQT---RSEFSEEELTSVVLMKNGRKVVCGSQSG-TVLLYSWGYFKD 71 (203)
Q Consensus 3 ~sp~~~~l~~~~~-d--~~i~vw~~~~----~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~ 71 (203)
+-|||++|.+|+. + ..+++++... ..... .+. ....--.....|||+.|+.|+... +..+|.-.....
T Consensus 74 ~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 74 FLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence 5689999988865 2 3577777543 11110 111 122233455568999999988764 344444321111
Q ss_pred ccee--eec----cCCCcee-EE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc
Q 028806 72 CSDR--FVG----LSPNSVD-AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (203)
Q Consensus 72 ~~~~--~~~----~~~~~v~-~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 120 (203)
.... +.. ......+ .+ .-|+|++++.+..+. .|||..+.+.+..+..
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPD 207 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCC
Confidence 1111 110 0111222 22 489999999998764 3678877766655543
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=83.64 E-value=10 Score=25.03 Aligned_cols=106 Identities=10% Similarity=0.088 Sum_probs=60.5
Q ss_pred EEeeCCCEEEEecCCCeEEEEEcCCcc-------ccceeeeccCCCceeEE-E---ee--CCCEEEEEcCCCcEEEEEcc
Q 028806 44 VLMKNGRKVVCGSQSGTVLLYSWGYFK-------DCSDRFVGLSPNSVDAL-L---KL--DEDRVITGSENGLISLVGIL 110 (203)
Q Consensus 44 ~~~~~~~~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~v~~~-~---~~--~~~~l~~~~~d~~i~~~d~~ 110 (203)
.|......|++++.-+.|.+++..... ..+..+. -...|+++ . .| ....|+.|+.. .|..||+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 444444567777777888888764221 1223333 34566666 2 22 34556666654 58899998
Q ss_pred CCceeeeeccCCCCceEEEEEeC---CCCeEEEEeCCCcEEEEeCCC
Q 028806 111 PNRIIQPIAEHSEYPIESLALSH---DRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~d~~i~iwd~~~ 154 (203)
....+.--..+ + .+.++.+-. ...-|+..+.+..|.-||...
T Consensus 82 ~N~d~Fyke~~-D-Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDLFYKEVP-D-GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cCchhhhhhCc-c-ceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 77666443333 3 477776632 223455555567777777543
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=83.64 E-value=13 Score=28.23 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCcEEEEEccC--CceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCccc
Q 028806 91 DEDRVITGSENGLISLVGILP--NRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILK 157 (203)
Q Consensus 91 ~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~ 157 (203)
++++++.|+.+| |.+.++.. ++..+.+.. . +|.++...+..+.|++-+ ....++++++.....
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~~--~-~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~ 77 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLIGR--R-SVTQIWVLEENNVLLMISGKKPQLYSHPLSALVE 77 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEecCc--C-ceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhh
Confidence 346899999999 45555554 334444432 2 799999999888777666 334599999976664
|
Unpublished observations. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=82.67 E-value=8.4 Score=23.43 Aligned_cols=41 Identities=15% Similarity=0.025 Sum_probs=27.7
Q ss_pred CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 100 ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 100 ~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..|.+..||+.+++..-.+.+- . --..|++++|+.+|+.+-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L-~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGL-Y-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEE-S-SEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCC-C-ccCeEEEcCCCCEEEEEe
Confidence 4567888999888765555444 2 357899999999776654
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=82.08 E-value=4.9 Score=34.46 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=48.8
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+.++ -+|.+.-++.+..||.|.+|+..+.......... . |-..+.|...| |+++..|+.+.-|.-..--++
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~-~-p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqq 88 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA-K-PKENLVFTNHG--LVTATSDRRALAWKEDGVVQQ 88 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc-C-Cccceeeeccc--eEEEeccchhheeeccCcchh
Confidence 345566 5799999999999999999998765543333322 1 34556665554 666677888888865443333
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=81.71 E-value=18 Score=26.59 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=64.6
Q ss_pred EEEEcCCCeEEEeecC-CccceEEEEEeeCCCEEEEecC-C--CeEEEEEcCC-ccc-cce----eeeccCCCceeEEEe
Q 028806 20 SVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQ-S--GTVLLYSWGY-FKD-CSD----RFVGLSPNSVDALLK 89 (203)
Q Consensus 20 ~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~wd~~~-~~~-~~~----~~~~~~~~~v~~~~~ 89 (203)
.+||+.+++... +.. ...-..+-.+.++|++|++|+. + ..+++++... ... .+. .+.. ..--.+...-
T Consensus 49 ~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~L 126 (243)
T PF07250_consen 49 VEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATTL 126 (243)
T ss_pred EEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceEC
Confidence 467777664422 221 1112223346789999998875 2 3577777532 001 111 1111 1111122246
Q ss_pred eCCCEEEEEcCCCc-EEEEEccC-C-cee-ee-ecc---CCCCceE-EEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 90 LDEDRVITGSENGL-ISLVGILP-N-RII-QP-IAE---HSEYPIE-SLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 90 ~~~~~l~~~~~d~~-i~~~d~~~-~-~~~-~~-~~~---~~~~~i~-~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
|+|+.|+.|+.... .-+|.... . ... .. +.. ......+ .+...|+|+.++.+..+. .|||..+.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 78999999887643 33444321 1 111 11 110 0011111 356789999998887654 44565554
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.45 E-value=29 Score=31.16 Aligned_cols=105 Identities=24% Similarity=0.299 Sum_probs=64.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~- 78 (203)
|..|-..++++|-. ..+++|++...++++..+ .-...|..+.+ .+..+++|...-.+.++-.+.....+..+..
T Consensus 940 Ai~~f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 940 AICPFQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred EEeccCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 45566666666544 689999998766554433 22455667766 4567777776666666666544455555543
Q ss_pred cCCCceeEEEeeCCCEEEEEcCCCcEEEEEc
Q 028806 79 LSPNSVDALLKLDEDRVITGSENGLISLVGI 109 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~ 109 (203)
.....+++++.-+...++.+..-|.+.+.-+
T Consensus 1017 ~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1017 PVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CccceeeEEEEecCCceeeccccCcEEEEEC
Confidence 0122355555566677777777777766554
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=81.36 E-value=25 Score=27.83 Aligned_cols=144 Identities=13% Similarity=0.114 Sum_probs=81.0
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEe----eCCCE--EEEec-CC---CeEEEEEcCCccccce
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM----KNGRK--VVCGS-QS---GTVLLYSWGYFKDCSD 74 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---~~i~~wd~~~~~~~~~ 74 (203)
|...+|+.....+-+.+||+... .++.+.. ++++.+..- -.++. |+.++ .+ ..|++|.+......+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 44567788888899999998754 4455542 345544432 23433 33333 32 4799998863222333
Q ss_pred eeec------cCCCceeEE--E-ee-CCC-EEEEEcCCCcEEEEEcc---CC----ceeeeeccCCCCceEEEEEeCCCC
Q 028806 75 RFVG------LSPNSVDAL--L-KL-DED-RVITGSENGLISLVGIL---PN----RIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 75 ~~~~------~~~~~v~~~--~-~~-~~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
.+.. .....++.+ + +| +|. +++....+|.+..|-+. .+ +.+..+...+ .+..|.......
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g 220 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETG 220 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccC
Confidence 3221 011223444 3 44 455 44456678888888774 23 3456666553 588888888888
Q ss_pred eEEEEeCCCcEEEEeCC
Q 028806 137 FLGSISHDSMLKLWDLD 153 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~ 153 (203)
+|+.+-.+.-|.-|+.+
T Consensus 221 ~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEEEEETTTEEEEEESS
T ss_pred CEEEecCccEEEEEecC
Confidence 99999888777777765
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.28 E-value=6 Score=32.35 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcC
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 67 (203)
..+||+++..|-|++||--.-+....+.+....|..+..+.+|.++++.+. ..+.+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 458999999999999996544334455666778999999999998877654 467777764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 203 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.97 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.96 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.96 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.96 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.96 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.96 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.95 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.95 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.95 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.95 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.94 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.94 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.94 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.94 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.94 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.94 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.94 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.94 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.94 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.94 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.94 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.94 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.94 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.94 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.94 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.93 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.93 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.93 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.93 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.93 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.93 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.93 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.93 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.93 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.93 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.93 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.93 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.93 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.93 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.92 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.92 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.92 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.92 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.92 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.92 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.92 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.92 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.92 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.91 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.91 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.91 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.91 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.91 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.91 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.9 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.9 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.9 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.9 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.9 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.89 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.88 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.88 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.87 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.85 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.84 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.84 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.82 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.8 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.78 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.78 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.77 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.76 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.76 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.76 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.76 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.75 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.74 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.74 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.73 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.73 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.73 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.72 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.71 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.7 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.7 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.7 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.7 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.7 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.69 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.69 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.69 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.68 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.67 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.67 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.67 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.67 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.65 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.63 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.62 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.62 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.61 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.6 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.58 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.58 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.57 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.56 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.52 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.5 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.49 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.49 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.47 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.47 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.46 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.44 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.43 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.43 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.42 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.42 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.42 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.42 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.41 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.41 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.39 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.38 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.37 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.37 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.34 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.34 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.32 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.32 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.32 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.32 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.24 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.22 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.22 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.22 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.22 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.21 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.19 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.19 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.17 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.15 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.12 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.11 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.1 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.1 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.1 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.08 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.08 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.07 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.04 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.02 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.02 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.96 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.94 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.91 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.89 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.89 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.88 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.85 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.85 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.85 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.84 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.83 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.82 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.8 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.76 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.76 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.76 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.73 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.67 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.65 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.64 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.62 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.6 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.59 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.52 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.52 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.52 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.49 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.43 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.41 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.4 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.39 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.39 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.38 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.33 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.32 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.27 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.27 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.26 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.24 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.24 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.23 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.23 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.21 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.2 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.2 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.17 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.16 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.16 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.12 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.11 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.09 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.05 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.02 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.02 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.01 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.0 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.99 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.95 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.88 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.87 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.87 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.84 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.78 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.76 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.73 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.69 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.64 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.61 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.58 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.54 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.45 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.42 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.4 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.39 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.38 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.37 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.37 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.35 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.34 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.29 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.28 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.26 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.26 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.22 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.22 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.1 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.09 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.08 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.99 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.96 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.89 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.89 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.83 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.8 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.71 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.7 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.67 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.57 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.56 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.48 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.41 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.41 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.37 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.28 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.24 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.19 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.05 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.04 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.0 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.97 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.81 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.55 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.51 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.35 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 95.25 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 94.94 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.77 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 94.7 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 94.63 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.31 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.83 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.59 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 93.26 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 93.14 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 92.35 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 91.64 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 91.45 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 91.23 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 90.45 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.37 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 86.85 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 85.04 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 84.18 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 83.79 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 83.08 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 82.64 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 82.58 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 80.05 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=201.30 Aligned_cols=150 Identities=12% Similarity=0.238 Sum_probs=141.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+.. ......+.+ |
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~-h 247 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSG-H 247 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECC-C
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999974 566778888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...|.++ |+|++.+|++++.|+.|++||+.+++++..+..|.. .|.+++|+|++++|++++.|+.|++||+.
T Consensus 248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~-~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD-QVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999 999999999999999999999999999999999965 89999999999999999999999999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-31 Score=196.97 Aligned_cols=154 Identities=16% Similarity=0.243 Sum_probs=141.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++++.||+|++||+.++..+..+..|..+|.+++|+|++++|++++.|+.|++||+.+ +..+..+.+ |
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~-h 96 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-H 96 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC-CcEEEEEeC-C
Confidence 57999999999999999999999999999999999999999999999999999999999999999975 577788898 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...|.++ |+|++++|++++.|+.|++||++++ .....+.+|.. .|.+++|+| ++.+|++++.|+.|++||+++..+
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~ 175 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS-CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC
T ss_pred CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC-cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 9999999 9999999999999999999999987 45567888855 899999999 678999999999999999976554
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=195.59 Aligned_cols=156 Identities=15% Similarity=0.286 Sum_probs=145.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.++.|++|++.+++....+..+...|.+++|+|++++|++++.|+.|++||+.+ +..+..+.+ |
T Consensus 128 ~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~-h 205 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEG-H 205 (321)
T ss_dssp EEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC-C
T ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcc-c
Confidence 47999999999999999999999999988888888889999999999999999999999999999975 567788888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..++.++ |+|++++|++++.|+.|++||+++++....+.+|.. .|.+++|+|++.+|++++.|+.|++||++++.+..
T Consensus 206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 9999999 999999999999999999999999999999999965 89999999999999999999999999998876543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=195.59 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=133.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceeeec-
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~- 78 (203)
|+|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .+|++++.|++|++||++. +.....+..
T Consensus 133 v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~ 211 (344)
T 4gqb_B 133 VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCS 211 (344)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEECC--
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cceeeeeecc
Confidence 5799999999999999999999999999999999999999999999987 5789999999999999985 455554432
Q ss_pred cCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+...+.++ |+|+ +.+|++|+.|+.|++||+++++++..+.+|.. .|++++|+|++ ++|++++.|+.|+|||+.++
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 044567888 8884 57888999999999999999999999999966 89999999998 57999999999999999887
Q ss_pred ccC
Q 028806 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
+..
T Consensus 291 ~~~ 293 (344)
T 4gqb_B 291 ELF 293 (344)
T ss_dssp EEE
T ss_pred cEE
Confidence 643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=201.07 Aligned_cols=155 Identities=14% Similarity=0.270 Sum_probs=145.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|++|+|||+.+++....+.+|...|.+++|+|++.+|++++.|++|++||+.. ..++..+.+ |
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-~~~~~~~~~-h 191 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHG-H 191 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-SCEEECCCC-C
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEEcC-C
Confidence 47999999999999999999999999988899999999999999999999999999999999999974 577788888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...|.++ |+|++.+|++++.|+.|++||++++.++..+.+|.. .|.++.|+|++.+|++++.|+.|++||+++....
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 9999999 999999999999999999999999999999999965 8999999999999999999999999999887544
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=189.45 Aligned_cols=154 Identities=15% Similarity=0.285 Sum_probs=144.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++|++.+++....+..|...|.+++|+|++++|++++.|+.|++||+.. +..+..+.. |
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~-~ 106 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKG-H 106 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC-CcEEEEEcC-C
Confidence 47999999999999999999999999998899999999999999999999999999999999999975 567788888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+.++ |+|++++|++++.|+.|++||+++++.+..+..|.. +|.+++|+|++++|++++.|+.|++||++++..
T Consensus 107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 183 (312)
T 4ery_A 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Confidence 9999999 999999999999999999999999999999998855 899999999999999999999999999987654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=190.08 Aligned_cols=154 Identities=19% Similarity=0.290 Sum_probs=141.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+. +..+..+.+ |
T Consensus 71 ~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~-h 147 (319)
T 3frx_A 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLG-H 147 (319)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT--SCEEEEECC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEec-c
Confidence 4689999999999999999999999999999999999999999999999999999999999999996 466777888 9
Q ss_pred CCceeEE-EeeC------CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 81 PNSVDAL-LKLD------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 81 ~~~v~~~-~~~~------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...+.++ +.|. +..+++++.|+.|++||+++++....+.+|.. .|.+++|+|++++|++++.|+.|++||+.
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 9999999 8774 45899999999999999999999989999965 89999999999999999999999999998
Q ss_pred CcccC
Q 028806 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
+....
T Consensus 227 ~~~~~ 231 (319)
T 3frx_A 227 AKKAM 231 (319)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 87654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=189.27 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=139.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.........+.+ |
T Consensus 61 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~-h 139 (304)
T 2ynn_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-H 139 (304)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC-C
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc-c
Confidence 368999999999999999999999999999999999999999999999999999999999999999764455667888 9
Q ss_pred CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC--CCCeEEEEeCCCcEEEEeCCCcc
Q 028806 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...|.++ |+| ++.+|++++.|+.|++||++.+.....+..+....+..+.|+| ++.+|++++.|+.|++||++++.
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence 9999999 998 6789999999999999999887766666544344789999987 77899999999999999998876
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
..
T Consensus 220 ~~ 221 (304)
T 2ynn_A 220 CV 221 (304)
T ss_dssp EE
T ss_pred cc
Confidence 44
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=191.33 Aligned_cols=149 Identities=15% Similarity=0.260 Sum_probs=134.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-c
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-L 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~ 79 (203)
++|+|++++|++|+.|+.|++||+.++.....+.+|...|.+++|+|++++|++++.|+.|++||++. ...+..+.. .
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~ 268 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDN 268 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999975 344444432 0
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+...+.++ |+|++.+|++|+.|+.|++||+.+++.+..+.+|.. +|.+++|+|++.+|++++.|+.|++||
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC-cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 23468888 999999999999999999999999999999999965 899999999999999999999999997
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-29 Score=189.02 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=135.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~ 76 (203)
|+|+|++++|++++.|++|++|++..+ ..+..+.+|...|.+++|+|++++|++++.|+.|++||+.... .++..+
T Consensus 67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence 479999999999999999999999876 4567888999999999999999999999999999999997532 235566
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.. |...+.++ |+|++.+|++++.|+.|++|+++++. +...+.+|.. .|.+++|+|++++|++++.|+.|++|++.
T Consensus 147 ~~-h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 147 NS-HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp CC-CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cC-cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 77 88999999 99999999999999999999998875 4567888865 89999999999999999999999999974
Q ss_pred C
Q 028806 154 D 154 (203)
Q Consensus 154 ~ 154 (203)
.
T Consensus 225 ~ 225 (345)
T 3fm0_A 225 L 225 (345)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=188.52 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=130.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--- 70 (203)
|+|+|++++|++++.|++|++|++.. ...+..+.+|...|.+++|+|++++|++++.|++|++||+...+
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 47999999999999999999999853 35667888999999999999999999999999999999995322
Q ss_pred ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC--ceeeeeccCCCCceEEEEEeCC--CCeEEEEeCCC
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN--RIIQPIAEHSEYPIESLALSHD--RKFLGSISHDS 145 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~ 145 (203)
.++..+.. |...|.++ |+|++.+|++++.|+.|++|++.++ +++..+.+|.. .|.+++|+|+ +.+|++++.|+
T Consensus 144 ~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 144 ECISVLQE-HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp EEEEEECC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCSSSSCEEEEEETTS
T ss_pred EEEEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEEEEecCCCCeeEEEEEeCCC
Confidence 34566778 99999999 9999999999999999999999876 57788889965 8999999998 67899999999
Q ss_pred cEEEEeCCCc
Q 028806 146 MLKLWDLDDI 155 (203)
Q Consensus 146 ~i~iwd~~~~ 155 (203)
.|++|++++.
T Consensus 222 ~v~iw~~~~~ 231 (330)
T 2hes_X 222 TVRVWKYMGD 231 (330)
T ss_dssp CEEEEEEEEE
T ss_pred eEEEEEecCC
Confidence 9999998765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-29 Score=192.71 Aligned_cols=155 Identities=15% Similarity=0.240 Sum_probs=143.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.+|++++.|+.|++||+.. +.+...+.. |
T Consensus 198 v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~-h 275 (410)
T 1vyh_C 198 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELRE-H 275 (410)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECC-C
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecC-C
Confidence 46899999999999999999999999999999999999999999999999999999999999999975 567778888 9
Q ss_pred CCceeEE-EeeC--------------------CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 81 PNSVDAL-LKLD--------------------EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 81 ~~~v~~~-~~~~--------------------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
...+.++ |+|+ +.+|++|+.|+.|++||++++.++..+.+|.. .|.+++|+|++++|+
T Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~ 354 (410)
T 1vyh_C 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFIL 354 (410)
T ss_dssp SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEE
T ss_pred CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEE
Confidence 9999999 8886 67899999999999999999999999999965 899999999999999
Q ss_pred EEeCCCcEEEEeCCCcccC
Q 028806 140 SISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~~~~ 158 (203)
+++.|+.|++||+.++...
T Consensus 355 s~s~D~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 355 SCADDKTLRVWDYKNKRCM 373 (410)
T ss_dssp EEETTTEEEEECCTTSCCC
T ss_pred EEeCCCeEEEEECCCCceE
Confidence 9999999999999876543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=184.26 Aligned_cols=156 Identities=17% Similarity=0.283 Sum_probs=142.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.. +..+..+.. |
T Consensus 71 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~-~ 148 (312)
T 4ery_A 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPA-H 148 (312)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-CCEEEEECC-C
T ss_pred EEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CEEEEEecC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 567777888 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..++.++ |+|++.++++++.|+.|++||+++++.+..+..+...++..++|+|++++|++++.|+.|++||++++...
T Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 227 (312)
T 4ery_A 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 227 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence 8999999 99999999999999999999999998887765443447999999999999999999999999999887643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=189.81 Aligned_cols=153 Identities=14% Similarity=0.214 Sum_probs=134.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE---EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ---TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~ 76 (203)
|+|+|+|++|++|+.|++|+||++.++... ....+|...|.+++|+|++++|++++.|+.+++|++.... .++..+
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 101 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL 101 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc
Confidence 579999999999999999999999887543 2336799999999999999999999999999999987432 356678
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.+ |...|.++ |+|++++|++++.|+.|++||+.++. .+..+..|.. .|.+++|+|++.+|++++.|+.|++|++
T Consensus 102 ~~-h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~ 179 (345)
T 3fm0_A 102 EG-HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYRE 179 (345)
T ss_dssp CC-CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEE
T ss_pred cC-CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEe
Confidence 88 99999999 99999999999999999999998763 4566778855 8999999999999999999999999998
Q ss_pred CCc
Q 028806 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
++.
T Consensus 180 ~~~ 182 (345)
T 3fm0_A 180 EED 182 (345)
T ss_dssp ETT
T ss_pred cCC
Confidence 765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=190.43 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=121.0
Q ss_pred CcccccCCEEEEE--cCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-------
Q 028806 1 MTFAADAMKLLGT--SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD------- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------- 71 (203)
++|||||++|+++ +.|++|+|||+.+++.+..+. |...|.+++|+|++++|++++.++ +.+|+......
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~ 216 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDF 216 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCC
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecC
Confidence 4799999987654 478999999999998887775 566788888888888888877554 44444321100
Q ss_pred --------------------------------------------cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028806 72 --------------------------------------------CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 72 --------------------------------------------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~ 106 (203)
....+.. |...|+++ |+|+|++|++|+.|+.|+|
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMKGELAVLASNDNSIAL 295 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence 0011234 56678899 9999999999999999999
Q ss_pred EEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 107 VGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
||+++++++..+ .+|.. +|++++|+||+++|++++.|++|+||+++...
T Consensus 296 wd~~~~~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 296 VKLKDLSMSKIFKQAHSF-AITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EETTTTEEEEEETTSSSS-CEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred EECCCCcEEEEecCcccC-CEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 999999998875 78865 89999999999999999999999999996544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-28 Score=185.06 Aligned_cols=155 Identities=20% Similarity=0.296 Sum_probs=139.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---ccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---DCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~ 77 (203)
|+|+|++++|++++.|++|++||+.++..+..+..|...|.+++|+|++++|++++.|+.+++|++.... .....+.
T Consensus 61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 140 (340)
T 1got_B 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec
Confidence 4799999999999999999999999999888999999999999999999999999999999999997532 2345567
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+ |...+.++ |++++. +++++.|+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||++++.
T Consensus 141 ~-h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~ 217 (340)
T 1got_B 141 G-HTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217 (340)
T ss_dssp C-CSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred C-CCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCCe
Confidence 7 88999999 887764 88999999999999999999999999965 89999999999999999999999999998876
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
..
T Consensus 218 ~~ 219 (340)
T 1got_B 218 CR 219 (340)
T ss_dssp EE
T ss_pred eE
Confidence 44
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=187.67 Aligned_cols=152 Identities=19% Similarity=0.307 Sum_probs=133.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.. +.....+. +
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~--~ 205 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLS--I 205 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE--C
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEEEEE--c
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 44554554 4
Q ss_pred CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeee-------ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPI-------AEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~-------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
...+.++ |+| ++.+|++++.|+.|++||++++..+..+ .+|.. .|.+++|+|++++|++++.|+.|++||
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 5677888 888 8999999999999999999998877666 45644 899999999999999999999999999
Q ss_pred CCCcc
Q 028806 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
+++..
T Consensus 285 ~~~~~ 289 (393)
T 1erj_A 285 LQNAN 289 (393)
T ss_dssp C----
T ss_pred CCCCC
Confidence 98754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=185.32 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=130.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|+|+|++ .|++|+.||+|+|||+.+++.+ ..+.+|...|++++|+|++++|++++.|++|++||+.+ +.++..+
T Consensus 88 ~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~~~ 165 (344)
T 4gqb_B 88 LTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSY 165 (344)
T ss_dssp EEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred EEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEEEE
Confidence 4789985 6789999999999999887533 23458999999999999999999999999999999975 6788889
Q ss_pred eccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCC-CCeEEEEeCCCcEEEEeC
Q 028806 77 VGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHD-RKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~-~~~l~~~~~d~~i~iwd~ 152 (203)
.+ |...|.++ |+|++. +|++++.|+.|++||++++++...+..+. ...+.+++|+|+ +++|++++.|+.|++||+
T Consensus 166 ~~-h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 166 RA-HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CC-CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred cC-cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99 99999999 999875 78899999999999999998887764332 236899999995 568889999999999999
Q ss_pred CCcccCC
Q 028806 153 DDILKGS 159 (203)
Q Consensus 153 ~~~~~~~ 159 (203)
+++.+..
T Consensus 245 ~~~~~~~ 251 (344)
T 4gqb_B 245 KSTSCVL 251 (344)
T ss_dssp CC--CCE
T ss_pred CCCcEEE
Confidence 9876543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-28 Score=182.32 Aligned_cols=150 Identities=17% Similarity=0.241 Sum_probs=131.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee---e
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---V 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---~ 77 (203)
++|+|++.+|++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.. ...... .
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~ 159 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG--ECKFSSAEKE 159 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS--CEEEECCTTT
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC--Cceeeeeccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999862 222222 2
Q ss_pred ccCCCceeEE-EeeCC----------CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 78 GLSPNSVDAL-LKLDE----------DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~----------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
. |...+.++ |+|++ .++++++.|+.|++|| ........+..|.. .|.+++|+|++++|++++.|+.
T Consensus 160 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 160 N-HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp S-CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCE
T ss_pred C-CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCe
Confidence 5 77789999 88886 7899999999999999 45667778888855 8999999999999999999999
Q ss_pred EEEEeCCCc
Q 028806 147 LKLWDLDDI 155 (203)
Q Consensus 147 i~iwd~~~~ 155 (203)
|++||+.+.
T Consensus 237 v~iwd~~~~ 245 (343)
T 2xzm_R 237 LLIWDILNL 245 (343)
T ss_dssp EEEEESSCC
T ss_pred EEEEECCCC
Confidence 999999543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-28 Score=182.91 Aligned_cols=155 Identities=17% Similarity=0.301 Sum_probs=139.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|++..|++++.|++|++||+.+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||++. +.++..+..
T Consensus 160 ~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~ 238 (354)
T 2pbi_B 160 CSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFET 238 (354)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECC
T ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecC
Confidence 36899999999999999999999999999999999999999999987 568999999999999999985 577788888
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...|.++ |+|++.+|++++.|+.|++||++.++.+..+..+. ...+.+++|+|++++|++++.|+.|++||+.++.
T Consensus 239 -h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 239 -HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred -CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 99999999 99999999999999999999999888776665432 2368899999999999999999999999998765
Q ss_pred c
Q 028806 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 318 ~ 318 (354)
T 2pbi_B 318 R 318 (354)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=187.40 Aligned_cols=152 Identities=21% Similarity=0.289 Sum_probs=130.5
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcC-CCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAA-DAMKLLGTSGDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|+| ++++|++|+.|++|++||++ .+..+..+.+|...|.+++|+|++.+|++++.|++|++||+.. +..+..+..
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~- 289 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNR- 289 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECC-
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecc-
Confidence 4555 78899999999999999998 4567778889999999999999999999999999999999985 445544433
Q ss_pred C-------CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee----ccCCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 80 S-------PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI----AEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 80 ~-------~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
+ ...+.++ |+|+|.+|++|+.+|.|++||+..++.+..+ .+|.. .|.+++|+|++.+|++|+.|+.|
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG-RISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC-CCCEEEECSSSSEEEEECTTSCE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC-ceEEEEECCCCCEEEEeeCCCCE
Confidence 2 2247888 9999999999999999999999988877666 56754 89999999999999999999999
Q ss_pred EEEeCCCcc
Q 028806 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
++|++....
T Consensus 369 ~iW~~~~~~ 377 (380)
T 3iz6_a 369 KIWAFSGHR 377 (380)
T ss_dssp EEEECCSSS
T ss_pred EEEecCCCc
Confidence 999997653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=183.68 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=130.8
Q ss_pred cccc--cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028806 2 TFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 2 ~~sp--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~- 78 (203)
+|+| ++++|++|+.|+.|++||+++++++..+..|...|.+++|+|++.+|++++.|++|++||++. ...+..+..
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~ 281 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKE 281 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCC
Confidence 4555 578999999999999999999999999999999999999999999999999999999999975 334444432
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+...+.++ |+|++.++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|+.|++|+
T Consensus 282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~-~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN-RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC-cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 023457788 999999999999999999999999999999999965 899999999999999999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=185.25 Aligned_cols=156 Identities=23% Similarity=0.251 Sum_probs=136.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceee--e
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRF--V 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~--~ 77 (203)
|+|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|+|++. ++++++.|+.|++||++.. .....+ .
T Consensus 145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~ 223 (357)
T 4g56_B 145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP-KPATRIDFC 223 (357)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS-SCBCBCCCT
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC-ceeeeeeec
Confidence 47999999999999999999999999999999999999999999999874 7889999999999999753 333333 3
Q ss_pred ccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 028806 78 GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~ 154 (203)
. +...+.++ |+|+ +.+|++|+.++.|++||+++++++..+..|.. .|.+++|+|++ ++|++++.|+.|+|||+++
T Consensus 224 ~-~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 224 A-SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp T-CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred c-ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 3 56678888 9997 56888999999999999999999999999865 89999999987 6799999999999999988
Q ss_pred cccCC
Q 028806 155 ILKGS 159 (203)
Q Consensus 155 ~~~~~ 159 (203)
++...
T Consensus 302 ~~~~~ 306 (357)
T 4g56_B 302 SEVFR 306 (357)
T ss_dssp CEEEE
T ss_pred CcEeE
Confidence 76543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=178.48 Aligned_cols=154 Identities=14% Similarity=0.152 Sum_probs=131.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC--CeEEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-cccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK--NTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~~~ 75 (203)
++|+|+|++|++|+.|++|+||++.. .+.+..+.+|...|.+++|+|+ +++|++++.|++|++||+.... ..+..
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~ 94 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV 94 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE
Confidence 47999999999999999999999974 3567788999999999999864 8999999999999999997532 34556
Q ss_pred eeccCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCce--eeeeccCCCCceEEEEEeCC-------------CCe
Q 028806 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLALSHD-------------RKF 137 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~~~-------------~~~ 137 (203)
+.. |...|.++ |+|+ +.+|++++.|+.|++||++++.. ...+..|.. .|.+++|+|+ +++
T Consensus 95 ~~~-h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~~~~ 172 (297)
T 2pm7_B 95 HAV-HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 172 (297)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS-CEEEEEECCCC------------CCE
T ss_pred eec-CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC-ccceEeecCCcccccccCCCCCCcce
Confidence 677 88999999 9997 89999999999999999987632 355677755 8999999997 579
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 028806 138 LGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (203)
|++++.|+.|++||+++..
T Consensus 173 l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 173 FVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp EEEEETTSCEEEEEEETTT
T ss_pred EEEEcCCCcEEEEEEcCCC
Confidence 9999999999999997654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=194.57 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=136.0
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee--
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-- 77 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-- 77 (203)
++|+|++. .|++++.|++|++|+..+++....+.+|...|.+++|+|++++|++++.|++|++||+.. +.....+.
T Consensus 153 v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~ 231 (611)
T 1nr0_A 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDD 231 (611)
T ss_dssp EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCT
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeeccc
Confidence 47999987 699999999999999999988899999999999999999999999999999999999874 45555552
Q ss_pred -----ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee----------------------------------
Q 028806 78 -----GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP---------------------------------- 117 (203)
Q Consensus 78 -----~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---------------------------------- 117 (203)
+ |...|.++ |+|++++|++++.|+.|++||+.+++.+..
T Consensus 232 ~~~~~~-h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 232 SLKNVA-HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310 (611)
T ss_dssp TSSSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred cccccc-cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEe
Confidence 6 88999999 999999999999999999999987765433
Q ss_pred ---------eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 118 ---------IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 118 ---------~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.+|.. .|.+++|+|++++|++++.|+.|++||+.++..
T Consensus 311 ~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 311 PELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp TTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCCcceEEcCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 345644 899999999999999999999999999988754
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=192.53 Aligned_cols=145 Identities=21% Similarity=0.356 Sum_probs=134.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++|+.. +.++..+.+ |
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~~~~~~~-h 507 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTG-H 507 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCEEEEEEC-C
T ss_pred EEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCEEEEEeC-C
Confidence 479999999999999999999996 456778888999999999999999999999999999999964 577888999 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
...|.++ |+|++++|++++.|+.|++||. +++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~-~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999 9999999999999999999995 6888999999965 899999999999999999999999997
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=179.21 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=124.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCC--eEEEee-cC-CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc------cc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRS-EF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF------KD 71 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~------~~ 71 (203)
+|+|+ +|++|+.|++|++|++..+ .....+ .. |...|.+++|+|++++|++++.|+.|++|++... ..
T Consensus 21 ~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~ 98 (330)
T 2hes_X 21 DFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD 98 (330)
T ss_dssp EEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCE
T ss_pred ccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccce
Confidence 56666 9999999999999999874 455555 44 8999999999999999999999999999998521 23
Q ss_pred cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC----CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 72 CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP----NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 72 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
.+..+.+ |...|.++ |+|++++|++++.|+.|++||++. .+++..+..|.. .|.+++|+|++.+|++++.|+.
T Consensus 99 ~~~~~~~-h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~ 176 (330)
T 2hes_X 99 LLAIIEG-HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ-DVKHVIWHPSEALLASSSYDDT 176 (330)
T ss_dssp EEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS-CEEEEEECSSSSEEEEEETTSC
T ss_pred eEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC-ceEEEEECCCCCEEEEEcCCCe
Confidence 4566778 99999999 999999999999999999999943 245677888865 8999999999999999999999
Q ss_pred EEEEeCCCc
Q 028806 147 LKLWDLDDI 155 (203)
Q Consensus 147 i~iwd~~~~ 155 (203)
|++||+.+.
T Consensus 177 i~iW~~~~~ 185 (330)
T 2hes_X 177 VRIWKDYDD 185 (330)
T ss_dssp EEEEEEETT
T ss_pred EEEEECCCC
Confidence 999998654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=192.66 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=130.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEe--------------------------------------------ec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTR--------------------------------------------SE 34 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~--------------------------------------------~~ 34 (203)
++|+|+|++||+|+.|++|+|||+.++ ..... +.
T Consensus 65 ~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~ 144 (611)
T 1nr0_A 65 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 144 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC
T ss_pred EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceec
Confidence 479999999999999999999998532 12222 23
Q ss_pred CCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC
Q 028806 35 FSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN 112 (203)
Q Consensus 35 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~ 112 (203)
+|...|.+++|+|++. .|++++.|++|++||... ..+...+.+ |...|.++ |+|++++|++++.|+.|++||+.++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-~~~~~~l~~-H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-CeEeeeecc-ccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 4566677777777765 588899999999999864 466778888 99999999 9999999999999999999999999
Q ss_pred ceeeeec-------cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 113 RIIQPIA-------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 113 ~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.+..+. +|.. .|.+++|+|++++|++++.|++|++||+.++..
T Consensus 223 ~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp CEEEECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred cEeeeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 8887774 6755 899999999999999999999999999988654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=175.43 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=130.5
Q ss_pred Ccccc--cCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCccc-cc
Q 028806 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKD-CS 73 (203)
Q Consensus 1 l~~sp--~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~-~~ 73 (203)
|+|+| ++++|++|+.|++|++|++.++. .+..+..|...|.+++|+|+ +.+|++++.|+.|++||+..... ..
T Consensus 59 v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 59 VDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp EEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred EEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee
Confidence 46775 38999999999999999998763 45567789999999999997 88999999999999999975422 23
Q ss_pred eeeeccCCCceeEE-EeeC-------------CCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCCceEEEEEeCCC
Q 028806 74 DRFVGLSPNSVDAL-LKLD-------------EDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~-------------~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
..+.. |...+.++ |+|+ +++|++++.|+.|++||++++. ....+.+|.. .|.+++|+|++
T Consensus 139 ~~~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~ 216 (297)
T 2pm7_B 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 216 (297)
T ss_dssp EEEEC-CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred eeeec-ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCC
Confidence 45677 88999999 9886 5799999999999999998766 5667888865 89999999984
Q ss_pred ---CeEEEEeCCCcEEEEeCCCc
Q 028806 136 ---KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 136 ---~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+|++++.|+.|++||+++.
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESST
T ss_pred CCceEEEEEECCCcEEEEEeCCC
Confidence 89999999999999999764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=181.08 Aligned_cols=156 Identities=18% Similarity=0.220 Sum_probs=136.8
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEee-----cCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccc
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRS-----EFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~ 73 (203)
++|+|+ +..|++|+.|++|++||+.+++.+..+ .+|...|.+++|++ ++.+|++++.|+.|++||++.....+
T Consensus 163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~ 242 (380)
T 3iz6_a 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242 (380)
T ss_dssp CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC
T ss_pred EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce
Confidence 357776 457999999999999999999887766 57888999999987 78999999999999999998656778
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC------CceEEEEEeCCCCeEEEEeCCCc
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE------YPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
..+.+ |...|.++ |+|++.+|++++.|+.|++||++++..+..+..+.. ..|.+++|+|++++|++++.||.
T Consensus 243 ~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 243 RTYHG-HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp EEECC-CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred EEECC-cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence 88888 99999999 999999999999999999999999988877765422 13889999999999999999999
Q ss_pred EEEEeCCCccc
Q 028806 147 LKLWDLDDILK 157 (203)
Q Consensus 147 i~iwd~~~~~~ 157 (203)
|++||+.++..
T Consensus 322 i~vwd~~~~~~ 332 (380)
T 3iz6_a 322 CYVWDTLLAEM 332 (380)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCce
Confidence 99999876653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=182.33 Aligned_cols=153 Identities=18% Similarity=0.305 Sum_probs=133.8
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEee-------cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc---
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF--- 69 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--- 69 (203)
++|+| ++++|++++.|+.|++||+.++..+..+ .+|...|.+++|+|++.+|++++.|+.|++||+...
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~ 291 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 36788 8999999999999999999998877666 568889999999999999999999999999999642
Q ss_pred --------cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC------C
Q 028806 70 --------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH------D 134 (203)
Q Consensus 70 --------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~------~ 134 (203)
..+...+.+ |...+.++ |+|++.+|++++.|+.|++||+.+++++..+.+|.. .|.+++|++ +
T Consensus 292 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~p~ 369 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPE 369 (393)
T ss_dssp ---------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTT
T ss_pred ccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-CEEEEEecCCcCcCCC
Confidence 123445677 88899999 999999999999999999999999999999999965 899999886 6
Q ss_pred CCeEEEEeCCCcEEEEeCCCc
Q 028806 135 RKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+++|++++.|+.|++|++...
T Consensus 370 ~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 370 YNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CEEEEEEETTSEEEEEEEEEC
T ss_pred CCEEEEECCCCcEEECccccc
Confidence 789999999999999998654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=182.22 Aligned_cols=153 Identities=17% Similarity=0.216 Sum_probs=129.2
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|+|+|++. ++++++.|+.|++||+++++....+. .+...+.+++|+|+ +.+|++++.|+.|++||+.. +..+..+
T Consensus 187 v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~ 265 (357)
T 4g56_B 187 VAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTS 265 (357)
T ss_dssp EEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEEE
T ss_pred EEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC-CcEeEEE
Confidence 46888875 78999999999999999887655443 46678999999997 46889999999999999985 5677888
Q ss_pred eccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~ 153 (203)
.. +...|.++ |+|++ ++|++++.|+.|+|||+++++++..+ +|.. .|++++|+| ++.+|++++.|+.|++|++.
T Consensus 266 ~~-~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~-~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 266 AV-HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRD-FVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp CC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ec-cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 88 99999999 99987 57899999999999999998877655 6755 899999999 78999999999999999997
Q ss_pred Cccc
Q 028806 154 DILK 157 (203)
Q Consensus 154 ~~~~ 157 (203)
+...
T Consensus 343 ~~~~ 346 (357)
T 4g56_B 343 SEGR 346 (357)
T ss_dssp ----
T ss_pred CCCc
Confidence 6443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=194.04 Aligned_cols=155 Identities=20% Similarity=0.284 Sum_probs=138.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---- 76 (203)
++|+|++++|++|+.|++|+|||+.++.....+.+|...|.+++|+|++++|++++.|++|++||+.. .....+
T Consensus 436 v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~--~~~~~~~~~~ 513 (694)
T 3dm0_A 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG--ECKYTISEGG 513 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEECSST
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC--CcceeeccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999853 222222
Q ss_pred eccCCCceeEE-EeeCC--CEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPNSVDAL-LKLDE--DRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ |...|.++ |+|++ ..+++++.|+.|++||+++++....+.+|.. .|.+++|+|++++|++++.|+.|++||++
T Consensus 514 ~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 514 EG-HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp TS-CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred CC-CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 35 77789999 99976 6899999999999999999999999999965 89999999999999999999999999998
Q ss_pred CcccCC
Q 028806 154 DILKGS 159 (203)
Q Consensus 154 ~~~~~~ 159 (203)
++....
T Consensus 592 ~~~~~~ 597 (694)
T 3dm0_A 592 EGKKLY 597 (694)
T ss_dssp TTEEEE
T ss_pred CCceEE
Confidence 876543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-28 Score=185.72 Aligned_cols=153 Identities=13% Similarity=0.097 Sum_probs=129.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~ 76 (203)
++|+|++++|++++.|+.|++|++.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.... .....+
T Consensus 17 ~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~ 96 (377)
T 3dwl_C 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96 (377)
T ss_dssp CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC
T ss_pred EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence 579999999999999999999999988 6777888999999999999999999999999999999997532 245556
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc---eeeeecc-CCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR---IIQPIAE-HSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. |...+.++ |+|++++|++++.|+.|++||+++++ ....+.. |.. .|.+++|+|++++|++++.|+.|++||
T Consensus 97 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd 174 (377)
T 3dwl_C 97 LR-LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS-TILSLDWHPNNVLLAAGCADRKAYVLS 174 (377)
T ss_dssp CC-CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS-CEEEEEECTTSSEEEEEESSSCEEEEE
T ss_pred cc-cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC-CeEEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 67 88999999 99999999999999999999999876 3666776 744 899999999999999999999999999
Q ss_pred CCCc
Q 028806 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+...
T Consensus 175 ~~~~ 178 (377)
T 3dwl_C 175 AYVR 178 (377)
T ss_dssp ECCS
T ss_pred EEec
Confidence 9643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-27 Score=174.96 Aligned_cols=155 Identities=18% Similarity=0.248 Sum_probs=133.2
Q ss_pred Ccccc--cCCEEEEEcCCCeEEEEEcCCC---------eEEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcC
Q 028806 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKN---------TVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp--~~~~l~~~~~d~~i~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~ 67 (203)
|+|+| ++++|++++.|+.|++|++.++ +.+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.
T Consensus 63 ~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 46888 6999999999999999999876 667788899999999999999 9999999999999999986
Q ss_pred Cccc-----------------------------------------------------------cceeeeccCCCceeEE-
Q 028806 68 YFKD-----------------------------------------------------------CSDRFVGLSPNSVDAL- 87 (203)
Q Consensus 68 ~~~~-----------------------------------------------------------~~~~~~~~~~~~v~~~- 87 (203)
.... .+..+.. |...|.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~ 221 (351)
T 3f3f_A 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-HKSLIRSIS 221 (351)
T ss_dssp STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-CCSCEEEEE
T ss_pred ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC-CCcceeEEE
Confidence 4211 0223445 77889999
Q ss_pred EeeCC----CEEEEEcCCCcEEEEEccCC----------------------------------------------ceeee
Q 028806 88 LKLDE----DRVITGSENGLISLVGILPN----------------------------------------------RIIQP 117 (203)
Q Consensus 88 ~~~~~----~~l~~~~~d~~i~~~d~~~~----------------------------------------------~~~~~ 117 (203)
|+|++ .+|++++.||.|++||++.+ +.+..
T Consensus 222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE 301 (351)
T ss_dssp ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence 99998 89999999999999999875 56667
Q ss_pred eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 118 IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 118 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+.+|.. .|.+++|+|++++|++++.||.|++|++.++..
T Consensus 302 ~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 302 HDDHNG-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ECTTSS-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred Eecccc-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 778855 899999999999999999999999999987654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=183.22 Aligned_cols=156 Identities=18% Similarity=0.290 Sum_probs=133.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 78 (203)
|+|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.. +..+..+..
T Consensus 145 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~ 223 (420)
T 3vl1_A 145 LKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNRKE 223 (420)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECBTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEeecCC
Confidence 47999999999999999999999999988888999999999999999999999999999999999975 455555543
Q ss_pred cC---------------------CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC
Q 028806 79 LS---------------------PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 79 ~~---------------------~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
.+ ...+.++ |+|++++|++++.+|.|++||+++++.+..+.......|.+++|+|++.
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 303 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNA 303 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCT
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCC
Confidence 01 2344445 6789999999999999999999998877776543344899999999998
Q ss_pred -eEEEEeCCCcEEEEeCCCccc
Q 028806 137 -FLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 137 -~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+|++++.||.|++||++++..
T Consensus 304 ~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 304 NYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp TEEEEEETTSEEEEEETTCTTS
T ss_pred CEEEEEeCCCeEEEEEcCCCcC
Confidence 999999999999999988643
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=174.79 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=135.7
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCC-----CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
|+|+|++ ++|++|+.|++|++|++.. +.++..+.+|...|.+++|+|++.+|++++.|++|++||+.+ +..+.
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~-~~~~~ 101 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GETYQ 101 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-CCeeE
Confidence 4688865 8999999999999999863 345678889999999999999999999999999999999975 57778
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCC------CCeEEEEeCCCcE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD------RKFLGSISHDSML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~------~~~l~~~~~d~~i 147 (203)
.+.+ |...|.++ |+|++.+|++++.|+.|++||++ +..+..+.+|.. .|.++.|+|. +.+|++++.|+.|
T Consensus 102 ~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~~i 178 (319)
T 3frx_A 102 RFVG-HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMV 178 (319)
T ss_dssp EEEC-CSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSS-CEEEEEECCC------CCEEEEEETTSCE
T ss_pred EEcc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCC-cEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence 8899 99999999 99999999999999999999986 567778888865 8999999985 4489999999999
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++||+++....
T Consensus 179 ~~wd~~~~~~~ 189 (319)
T 3frx_A 179 KAWNLNQFQIE 189 (319)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCcchhh
Confidence 99999876543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-27 Score=174.57 Aligned_cols=148 Identities=13% Similarity=0.088 Sum_probs=116.5
Q ss_pred cccc---cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc---cceEEEEEeeCCCEE------------EEecCCCeEEE
Q 028806 2 TFAA---DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE---EELTSVVLMKNGRKV------------VCGSQSGTVLL 63 (203)
Q Consensus 2 ~~sp---~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~d~~i~~ 63 (203)
+|+| ++.+|++++.|++|+|||+.+++++.++.+|. ..+.+++|+|++.++ ++|+.|++|++
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 5677 66889999999999999999999999997653 357788999999876 55778999999
Q ss_pred EEcCCccccceee-----eccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE
Q 028806 64 YSWGYFKDCSDRF-----VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 64 wd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
||..+ +..+..+ .+ |...+.+ .+.++.++++++.|++|+|||+.+++++.++.+|....+.+++|+|+|++|
T Consensus 265 Wd~~t-gk~l~v~~~~~p~G-h~~~~ls-g~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 265 INPKT-TLSVGVMLYCLPPG-QAGRFLE-GDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EETTT-TEEEEEEEECCCTT-CCCCEEE-EEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred EECCC-CEEEEEEEeeccCC-CcceeEc-cccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 99975 4444443 23 4333322 244488999999999999999999999999998866345568999999999
Q ss_pred EEEeCCCcEEEEeC
Q 028806 139 GSISHDSMLKLWDL 152 (203)
Q Consensus 139 ~~~~~d~~i~iwd~ 152 (203)
++|+.|++|+|||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999986
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=182.00 Aligned_cols=155 Identities=13% Similarity=0.160 Sum_probs=137.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.|+|++++|++++.|+.|++|++.++.....+..|...|.+++|+|++++|++++.|+.|++||+.. +..+..+.. |.
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~-h~ 181 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-GSNPRTLIG-HR 181 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCCCEEEEC-CS
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-CcCceEEcC-CC
Confidence 5789999999999999999999999998888889999999999999999999999999999999975 567788888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC---C--------------------CceEEEEEeCCCCe
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---E--------------------YPIESLALSHDRKF 137 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~--------------------~~i~~i~~~~~~~~ 137 (203)
..|.++ |+|++.+|++++.|+.|++||+++++.+..+..+. . ..+.+++|+|++++
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence 999999 99999999999999999999999999888886532 1 13444556789999
Q ss_pred EEEEeCCCcEEEEeCCCcccC
Q 028806 138 LGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|++++.|+.|++||++++...
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEE
T ss_pred EEEEcCCCeEEEEECCCCcee
Confidence 999999999999999887643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=173.96 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=132.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC----eEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcc----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK---- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~---- 70 (203)
|+|+|++++|++++.||.|++|++.++ +....+.+|...|.+++|+| ++.+|++++.|+.|++||+....
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~ 96 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS 96 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc
Confidence 579999999999999999999999875 46677888999999999999 69999999999999999997532
Q ss_pred ----ccceeeeccCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCce-----------------------------
Q 028806 71 ----DCSDRFVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRI----------------------------- 114 (203)
Q Consensus 71 ----~~~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~~----------------------------- 114 (203)
..+..+.. |...+.++ |+|+ +.++++++.|+.|++||+++++.
T Consensus 97 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 97 GRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp SCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred ccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 33556677 88999999 9999 99999999999999999875431
Q ss_pred -------------------------------eeeeccCCCCceEEEEEeCCC----CeEEEEeCCCcEEEEeCCCccc
Q 028806 115 -------------------------------IQPIAEHSEYPIESLALSHDR----KFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 115 -------------------------------~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+..+..|.. .|.+++|+|++ ++|++++.|+.|++||+++...
T Consensus 176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 334455644 89999999998 8999999999999999987643
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=181.63 Aligned_cols=155 Identities=11% Similarity=0.153 Sum_probs=138.7
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC-------eEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN-------TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
|+|+| ++++|++|+.||.|++|++.++ ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.. +.
T Consensus 87 ~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~ 165 (402)
T 2aq5_A 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GA 165 (402)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-TE
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CC
Confidence 47999 8999999999999999999887 5567788999999999999998 6999999999999999985 56
Q ss_pred cceee--eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEE---eCC
Q 028806 72 CSDRF--VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSI---SHD 144 (203)
Q Consensus 72 ~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~---~~d 144 (203)
.+..+ .. |...+.++ |+|++.+|++++.|+.|++||+++++.+..+ ..|....+.++.|+|++.+|+++ +.|
T Consensus 166 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d 244 (402)
T 2aq5_A 166 AVLTLGPDV-HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE 244 (402)
T ss_dssp EEEEECTTT-CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCC
T ss_pred ccEEEecCC-CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCC
Confidence 66677 67 88999999 9999999999999999999999999998888 67765458999999999999999 789
Q ss_pred CcEEEEeCCCccc
Q 028806 145 SMLKLWDLDDILK 157 (203)
Q Consensus 145 ~~i~iwd~~~~~~ 157 (203)
+.|++||+++...
T Consensus 245 ~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 245 RQVALWDTKHLEE 257 (402)
T ss_dssp EEEEEEETTBCSS
T ss_pred ceEEEEcCccccC
Confidence 9999999988654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=177.40 Aligned_cols=153 Identities=17% Similarity=0.182 Sum_probs=130.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcc-cccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~-~~~~~ 75 (203)
++|+|+|++|++|+.|++|+|||+.++. .+..+.+|...|.+++|+| ++++|++++.|++|++||+.... .....
T Consensus 19 v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 98 (316)
T 3bg1_A 19 AQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE 98 (316)
T ss_dssp EEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred eeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE
Confidence 4799999999999999999999998764 4677889999999999986 48999999999999999997532 34556
Q ss_pred eeccCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCce---eeeeccCCCCceEEEEEeCC---------------
Q 028806 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRI---IQPIAEHSEYPIESLALSHD--------------- 134 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~i~~i~~~~~--------------- 134 (203)
+.+ |...|.++ |+|+ +.+|++++.|+.|++|+++.+.. ...+..|.. .|.+++|+|+
T Consensus 99 ~~~-h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 99 HAG-HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-GCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp ECC-CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS-CBCCCEECCCCCC------CCSCCC
T ss_pred ccC-CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC-CcceEEEccccCCccccccccccCc
Confidence 777 89999999 9997 88999999999999999987532 345567754 7999999997
Q ss_pred --CCeEEEEeCCCcEEEEeCCCc
Q 028806 135 --RKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 135 --~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+.+|++++.|+.|++||++..
T Consensus 177 ~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 177 NYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp CCCCBEECCBTTSBCCEEEECTT
T ss_pred cccceEEEecCCCeEEEEEeCCC
Confidence 478999999999999999754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=182.00 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=125.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--ccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~ 75 (203)
++|+|++++|++++.|++|++|++.++. ....+..|...|.+++|+|++++|++++.|+.|++||+..... ....
T Consensus 61 ~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 140 (377)
T 3dwl_C 61 VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH 140 (377)
T ss_dssp EEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence 4799999999999999999999999876 5667788999999999999999999999999999999975322 2444
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc------------------CCceeeeeccCCCCceEEEEEeCCCC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL------------------PNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~------------------~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
+...|...+.++ |+|++.+|++++.|+.|++||+. .++++..+ .|.. .|.+++|+|+++
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~ 218 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGN 218 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSS
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCC
Confidence 432267889999 99999999999999999999985 34556666 6744 899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCccc
Q 028806 137 FLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+|++++.|+.|++||+.++..
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTS
T ss_pred EEEEEeCCCcEEEEECCCCCC
Confidence 999999999999999998765
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=184.57 Aligned_cols=147 Identities=20% Similarity=0.343 Sum_probs=135.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++++.|+.|++|+. +++.+..+..|...|.+++|+|++++|++++.|+.|++|+.. +..+..+.. |
T Consensus 391 ~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~-~ 466 (577)
T 2ymu_A 391 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTLTG-H 466 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcC-C
Confidence 478999999999999999999995 566778888999999999999999999999999999999974 467778888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
...+.++ |+|++++|++++.|+.|++|+. +++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||..
T Consensus 467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC-CEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 9999999 9999999999999999999995 6888899999965 89999999999999999999999999964
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-26 Score=171.20 Aligned_cols=147 Identities=20% Similarity=0.257 Sum_probs=127.6
Q ss_pred cc-cCCEEEEEcCCCeEEEEEcCC-------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 4 AA-DAMKLLGTSGDGTLSVCNLRK-------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 4 sp-~~~~l~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
+| ++++|++|+.|++|++|++.. +.....+.+|...|.+++|+|++.++++++.|++|++||+.+ +..+..
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~-~~~~~~ 113 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-GTTYKR 113 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS-SCEEEE
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEE
Confidence 55 899999999999999999874 345677889999999999999999999999999999999985 567788
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec---cCCCCceEEEEEeCCC----------CeEEEE
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA---EHSEYPIESLALSHDR----------KFLGSI 141 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~~i~~i~~~~~~----------~~l~~~ 141 (203)
+.+ |...|.++ |+|++++|++++.|+.|++||+... ...... .|.. .|.+++|+|++ .+|+++
T Consensus 114 ~~~-h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~l~s~ 190 (343)
T 2xzm_R 114 FVG-HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSD-WVSCVRYSPIMKSANKVQPFAPYFASV 190 (343)
T ss_dssp EEC-CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSS-CEEEEEECCCCCSCSCCCSSCCEEEEE
T ss_pred EcC-CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCc-eeeeeeeccccccccccCCCCCEEEEE
Confidence 888 99999999 9999999999999999999999743 333332 5544 79999999987 789999
Q ss_pred eCCCcEEEEeCCC
Q 028806 142 SHDSMLKLWDLDD 154 (203)
Q Consensus 142 ~~d~~i~iwd~~~ 154 (203)
+.|+.|++||...
T Consensus 191 ~~d~~i~iwd~~~ 203 (343)
T 2xzm_R 191 GWDGRLKVWNTNF 203 (343)
T ss_dssp ETTSEEEEEETTT
T ss_pred cCCCEEEEEcCCC
Confidence 9999999999543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=180.45 Aligned_cols=155 Identities=17% Similarity=0.229 Sum_probs=127.5
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|+|+| ++++||+|+.||+|+|||+.++. ....+.+|...|++|+|+| ++++|++++.|++|++||+.. .....+
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~--~~~~~~ 202 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG--NILRVF 202 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS--CEEEEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC--CceeEE
Confidence 57999 56799999999999999998654 4455678999999999998 689999999999999999963 333333
Q ss_pred ecc--CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 028806 77 VGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iwd~ 152 (203)
... +...+.++ |+|++.+|++|+.+|.|++||++ ++.+..+..|.. .|.+++|+|++. +|++++.|+.|++||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~ 280 (435)
T 4e54_B 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDL 280 (435)
T ss_dssp ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEET
T ss_pred eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccc-eEEeeeecCCCceEEEEecCcceeeEEec
Confidence 320 23346777 89999999999999999999986 466777888865 899999999886 6788999999999999
Q ss_pred CCcccCC
Q 028806 153 DDILKGS 159 (203)
Q Consensus 153 ~~~~~~~ 159 (203)
++.....
T Consensus 281 ~~~~~~~ 287 (435)
T 4e54_B 281 RQVRGKA 287 (435)
T ss_dssp TTCCSSS
T ss_pred ccccccc
Confidence 8876543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=190.01 Aligned_cols=155 Identities=15% Similarity=0.245 Sum_probs=142.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.+|.|+||++.++..+..+..|..+|.+++|+|++++|++++.|+.|++|++.+ +..+..+.. |
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~-~ 96 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-H 96 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEec-C
Confidence 57999999999999999999999999999999999999999999999999999999999999999975 577778888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+.++ |+|++++|++++.+|.|++|++.++ .....+..|.. .|.+++|+| ++.+|++++.|+.|++||+.+...
T Consensus 97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 175 (814)
T 3mkq_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC
T ss_pred CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC-cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 9999999 9999999999999999999999987 66677788855 899999999 889999999999999999977654
Q ss_pred C
Q 028806 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 176 ~ 176 (814)
T 3mkq_A 176 N 176 (814)
T ss_dssp S
T ss_pred e
Confidence 3
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-26 Score=174.03 Aligned_cols=152 Identities=12% Similarity=0.142 Sum_probs=134.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC---C---ccceEEEEEeeCCCEEEEecCC---CeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---S---EEELTSVVLMKNGRKVVCGSQS---GTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~ 71 (203)
++|+|++ +|++++.|+.|++|++.+++.+..+.. | ...|.+++|+|++.+|++++.+ +.|++||+.. +.
T Consensus 192 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~ 269 (397)
T 1sq9_A 192 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GE 269 (397)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CC
T ss_pred EEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-Cc
Confidence 4689999 999999999999999999999988888 8 8999999999999999999999 9999999975 45
Q ss_pred cceeeecc------------CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec------cC-----------
Q 028806 72 CSDRFVGL------------SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA------EH----------- 121 (203)
Q Consensus 72 ~~~~~~~~------------~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------~~----------- 121 (203)
.+..+... |...+.++ |+|++.+|++++.|+.|++||+++++.+..+. .|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccc
Confidence 55555421 46788999 99999999999999999999999999998888 66
Q ss_pred ----CCCceEEEEEeCCC----------CeEEEEeCCCcEEEEeCCCc
Q 028806 122 ----SEYPIESLALSHDR----------KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 122 ----~~~~i~~i~~~~~~----------~~l~~~~~d~~i~iwd~~~~ 155 (203)
.. +|.+++|+|++ ++|++++.|+.|++|++.++
T Consensus 350 ~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 350 DSLAEP-GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCSSC-CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccCC-ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 55 89999999998 79999999999999999765
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=176.32 Aligned_cols=157 Identities=10% Similarity=0.176 Sum_probs=141.3
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCC------ccceEEEEEeeCC-CEEEEecCCC---eEEEEEcCCc
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFS------EEELTSVVLMKNG-RKVVCGSQSG---TVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~---~i~~wd~~~~ 69 (203)
++|+|+ +.+|++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++ .+|++++.++ .|++||++..
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 478998 789999999999999999999988888766 7889999999997 6899999998 9999999865
Q ss_pred cccceeee-ccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-CeEEEEeCCC
Q 028806 70 KDCSDRFV-GLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSISHDS 145 (203)
Q Consensus 70 ~~~~~~~~-~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~ 145 (203)
...+..+. . |...+.++ |+| ++.+|++++.|+.|++||+++++.+..+..|.. .|.+++|+|++ .+|++++.|+
T Consensus 251 ~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 251 NTPLQTLNQG-HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp TSCSBCCCSC-CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSS
T ss_pred CCCcEEeecC-ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCC
Confidence 56677777 7 89999999 999 999999999999999999999999999999865 89999999999 8999999999
Q ss_pred cEEEEeCCCcccCC
Q 028806 146 MLKLWDLDDILKGS 159 (203)
Q Consensus 146 ~i~iwd~~~~~~~~ 159 (203)
.|++|++.+.....
T Consensus 329 ~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 329 KIEVQTLQNLTNTL 342 (416)
T ss_dssp EEEEEESCCCCCSS
T ss_pred cEEEEEccCCCCCc
Confidence 99999998876544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=173.02 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=134.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC--CCeEEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-cccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~~~ 75 (203)
|+|+|++++|++++.||.|++|++. ++..+..+..|...|++++|+++ +.+|++++.|+.|++||+.... ..+..
T Consensus 17 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 96 (379)
T 3jrp_A 17 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 96 (379)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee
Confidence 5799999999999999999999998 55677788899999999999987 8999999999999999997532 15566
Q ss_pred eeccCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCCceEEEEEeC-------------CCCe
Q 028806 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSH-------------DRKF 137 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~-------------~~~~ 137 (203)
+.. |...+.++ |+|+ +.++++++.++.|++||++.+. ....+..|.. .|.+++|+| ++.+
T Consensus 97 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T 3jrp_A 97 HAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 174 (379)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT-CEEEEEECCCC----------CTTCE
T ss_pred ecC-CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC-ceEEEEEcCccccccccccCCCCCCE
Confidence 677 88999999 9999 9999999999999999998773 3445566755 899999999 6899
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 028806 138 LGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (203)
|++++.|+.|++||+++..
T Consensus 175 l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 175 FVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp EEEEETTSCEEEEEEETTT
T ss_pred EEEEeCCCeEEEEEecCCC
Confidence 9999999999999997654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=179.94 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=128.6
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
|+|+| ++++|++++.|++|++||+.++....... .+...+.+++|+|++.+|++|+.|+.|++||+. +..+..+.
T Consensus 170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~~~~ 247 (435)
T 4e54_B 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELWNLR 247 (435)
T ss_dssp EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCCCSB
T ss_pred EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeEEEe
Confidence 47998 68899999999999999998765543333 334567899999999999999999999999986 35667788
Q ss_pred ccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeee---eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 78 GLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQP---IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. |...|.++ |+|++. ++++++.|+.|++||+++.+.... ...|.. +|.+++|+|++++|++++.|+.|++||+
T Consensus 248 ~-h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~spdg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 248 M-HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH-PVNAACFSPDGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp C-CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS-CEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred c-ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc-cccceeECCCCCeeEEEcCCCEEEEEEC
Confidence 8 99999999 999876 677899999999999987664433 345644 8999999999999999999999999999
Q ss_pred CCccc
Q 028806 153 DDILK 157 (203)
Q Consensus 153 ~~~~~ 157 (203)
+++..
T Consensus 326 ~~~~~ 330 (435)
T 4e54_B 326 SQWDC 330 (435)
T ss_dssp SSSSS
T ss_pred CCCcc
Confidence 87653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=173.95 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=129.0
Q ss_pred Ccccc--cCCEEEEEcCCCeEEEEEcCCC--eEEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCccc--c
Q 028806 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKN--TVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFKD--C 72 (203)
Q Consensus 1 l~~sp--~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~--~ 72 (203)
|+|+| ++++|++++.|++|++||+.++ .....+.+|...|.+++|+|+ +.+|++++.|+.|++||+..... .
T Consensus 63 v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 63 VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp EEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred EEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 46765 4899999999999999999876 456678889999999999998 78999999999999999975322 1
Q ss_pred ceeeeccCCCceeEE-EeeC-----------------CCEEEEEcCCCcEEEEEccCC---ceeeeeccCCCCceEEEEE
Q 028806 73 SDRFVGLSPNSVDAL-LKLD-----------------EDRVITGSENGLISLVGILPN---RIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~-----------------~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~i~~i~~ 131 (203)
...+.. |...+.++ |+|+ +.+|++++.|+.|++||++.+ +++..+.+|.. .|.+++|
T Consensus 143 ~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~ 220 (316)
T 3bg1_A 143 KKINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAW 220 (316)
T ss_dssp CCBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS-CEEEEEC
T ss_pred eeeecc-ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC-ceEEEEe
Confidence 344556 78888888 8887 478999999999999999755 46677888865 8999999
Q ss_pred eCCC----CeEEEEeCCCcEEEEeCCCc
Q 028806 132 SHDR----KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 132 ~~~~----~~l~~~~~d~~i~iwd~~~~ 155 (203)
+|++ .+|++++.|+.|++|++.+.
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~ 248 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDA 248 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSST
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCc
Confidence 9986 78999999999999998763
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=172.87 Aligned_cols=152 Identities=15% Similarity=0.222 Sum_probs=131.9
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|+|+|++ ++|++|+.|+.|++|++.++.....+. +|...|.+++|+| ++.+|++++.|+.|++||+.. ..+..+
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~ 156 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--SVIQVF 156 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--CEEEEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--CceEEE
Confidence 4799999 899999999999999999876655554 6899999999999 789999999999999999973 445555
Q ss_pred ecc--CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEEeC
Q 028806 77 VGL--SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iwd~ 152 (203)
... +...+.++ |+|++.+|++++.++.|++||+ +++.+..+..|.. .|.+++|+|+++ +|++++.|+.|++||+
T Consensus 157 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 234 (383)
T 3ei3_B 157 AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDL 234 (383)
T ss_dssp ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEG
T ss_pred eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeC
Confidence 440 33679999 9999999999999999999999 5778888888865 899999999998 8999999999999999
Q ss_pred CCcc
Q 028806 153 DDIL 156 (203)
Q Consensus 153 ~~~~ 156 (203)
++..
T Consensus 235 ~~~~ 238 (383)
T 3ei3_B 235 RNIK 238 (383)
T ss_dssp GGCC
T ss_pred CCCC
Confidence 8743
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-26 Score=195.80 Aligned_cols=154 Identities=17% Similarity=0.250 Sum_probs=143.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++|+.||+|++|++.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+ +..+..+.. |
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~-~ 698 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-GKLVHTYDE-H 698 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-C
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC-CceEEEEcC-C
Confidence 47999999999999999999999999999999999999999999999999999999999999999975 577888888 9
Q ss_pred CCceeEE-Eee--CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKL--DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+.++ |+| ++.++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+.++..
T Consensus 699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN-SVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS-CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC-CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 9999999 888 566899999999999999999999999999966 899999999999999999999999999987654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=169.37 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=133.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee---
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV--- 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--- 77 (203)
|+|+|++++|++++.||.|++|++.+++.+..+..|...|.+++|+|++++|++++.|+.|++||+... ..+..+.
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~ 116 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG-QCVATWKSPV 116 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-CEEEEEECSS
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCC
Confidence 579999999999999999999999999999999999999999999999999999999999999998642 2221111
Q ss_pred ------------------------------------------------------ccCCC--ceeEE-EeeCCCEEEEEcC
Q 028806 78 ------------------------------------------------------GLSPN--SVDAL-LKLDEDRVITGSE 100 (203)
Q Consensus 78 ------------------------------------------------------~~~~~--~v~~~-~~~~~~~l~~~~~ 100 (203)
. +.. .+.++ |+|+++++++++.
T Consensus 117 ~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 195 (369)
T 3zwl_B 117 PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT-HEGLDAATVAGWSTKGKYIIAGHK 195 (369)
T ss_dssp CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC-CTTCCCEEEEEECGGGCEEEEEET
T ss_pred CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC-CcCccceeEEEEcCCCCEEEEEcC
Confidence 0 111 56677 8889999999999
Q ss_pred CCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 101 NGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 101 d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+|.|++||+++ +..+..+..|.. .|.+++|+|++++|++++.|+.|++||++++...
T Consensus 196 dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 196 DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 99999999998 678888888855 8999999999999999999999999999887654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=172.97 Aligned_cols=155 Identities=13% Similarity=0.184 Sum_probs=138.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++++.||.|++|++.+++.+..+..|...|.+++| ++.+|++++.|+.|++||+.........+.. |
T Consensus 140 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~ 216 (401)
T 4aez_A 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-H 216 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-C
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC-C
Confidence 479999999999999999999999999999999999999999999 4679999999999999999865677778888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEe--CCCcEEEEeCCCcc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS--HDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~--~d~~i~iwd~~~~~ 156 (203)
...+.++ |+|++.+|++++.|+.|++||+++++.+..+..|.. .|.+++|+|++. ++++++ .|+.|++||+.++.
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 9999999 999999999999999999999999999988988855 899999999775 555554 69999999998876
Q ss_pred cCC
Q 028806 157 KGS 159 (203)
Q Consensus 157 ~~~ 159 (203)
...
T Consensus 296 ~~~ 298 (401)
T 4aez_A 296 RVN 298 (401)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-26 Score=169.34 Aligned_cols=155 Identities=14% Similarity=0.241 Sum_probs=134.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE---EEee--cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cce
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV---QTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~---~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~ 74 (203)
++|+|++++|++++ ||.|++|++.++.. ...+ ..|...|.+++|+|++++|++++.++.|++||+..... ...
T Consensus 57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence 47999999999998 99999999986532 2222 26888999999999999999999999999999975321 445
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+.. +...+.++ |+|+++++++++.++.|++||+++++.+..+..|.. .|.+++|+|++++|++++.|+.|++||++
T Consensus 136 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 136 ELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eccc-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 6677 88889999 999999999999999999999999999999988855 89999999999999999999999999998
Q ss_pred CcccC
Q 028806 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 214 ~~~~~ 218 (337)
T 1gxr_A 214 EGRQL 218 (337)
T ss_dssp TTEEE
T ss_pred CCceE
Confidence 87654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=164.53 Aligned_cols=154 Identities=14% Similarity=0.214 Sum_probs=122.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC-----------------------------------------Cccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----------------------------------------SEEE 39 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-----------------------------------------~~~~ 39 (203)
|+|+|++++|++|+.|++|++|++.+++.+..+.+ |...
T Consensus 73 v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (318)
T 4ggc_A 73 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 152 (318)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred EEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCc
Confidence 47999999999999999999999998876554433 4455
Q ss_pred eEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc---ceee----------------------------------------
Q 028806 40 LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC---SDRF---------------------------------------- 76 (203)
Q Consensus 40 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~---~~~~---------------------------------------- 76 (203)
+..+.+++++++|++++.|+.|++||+...... ....
T Consensus 153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~ 232 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 232 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC
T ss_pred eEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc
Confidence 677788888999999999999999998642110 0000
Q ss_pred ----eccCCCceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 77 ----VGLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 77 ----~~~~~~~v~~~-~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.. +...+..+ |+|.+..+++++ .|+.|++||+++++++..+.+|.. .|++++|+|++++|++++.|++|+|
T Consensus 233 ~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~-~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 233 CLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp EEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEE
T ss_pred cccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEE
Confidence 01 22334555 788888877654 789999999999999999999966 8999999999999999999999999
Q ss_pred EeCCCcc
Q 028806 150 WDLDDIL 156 (203)
Q Consensus 150 wd~~~~~ 156 (203)
||+....
T Consensus 311 Wd~~~~d 317 (318)
T 4ggc_A 311 WRCFELD 317 (318)
T ss_dssp ECCSCCC
T ss_pred EECCCCC
Confidence 9997654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=176.58 Aligned_cols=155 Identities=15% Similarity=0.210 Sum_probs=135.0
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcC--CCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc---c
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLR--KNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---C 72 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~ 72 (203)
++|+|++++| ++++.|+.|++|++. ++..+..+. .+...|.+++|+|++.+|++++.++.+++|++..... .
T Consensus 108 ~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~ 187 (450)
T 2vdu_B 108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT 187 (450)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC
T ss_pred EEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc
Confidence 4799999996 889999999999998 777777665 5668899999999999999999999999999974321 2
Q ss_pred ceeeeccCCCceeEE-EeeC---CCEEEEEcCCCcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 73 SDRFVGLSPNSVDAL-LKLD---EDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
...+.+ |...+.++ |+|+ +.+|++++.|+.|++||+.+++.+.. +.+|.. .|.+++|+ ++++|++++.|+.|
T Consensus 188 ~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v 264 (450)
T 2vdu_B 188 QEPILG-HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH-FVSSICCG-KDYLLLSAGGDDKI 264 (450)
T ss_dssp CCCSEE-CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS-CEEEEEEC-STTEEEEEESSSEE
T ss_pred ceeeec-ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC-ceEEEEEC-CCCEEEEEeCCCeE
Confidence 336777 89999999 9999 99999999999999999999988877 557754 89999999 99999999999999
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++||++++...
T Consensus 265 ~vwd~~~~~~~ 275 (450)
T 2vdu_B 265 FAWDWKTGKNL 275 (450)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcEe
Confidence 99999987643
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=169.74 Aligned_cols=151 Identities=11% Similarity=0.084 Sum_probs=131.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc--eee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS--DRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~ 76 (203)
++|+|++++|++++.++.|++|++.+++ .+..+..|...|.+++|+|++++|++++.|+.|++||+... ... ..+
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~ 92 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-TWKPTLVI 92 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-EEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC-eeeeeEEe
Confidence 4799999999999999999999999987 77888899999999999999999999999999999999643 322 233
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce---eeee-ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI---IQPI-AEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. +...+.++ |+|++++|++++.++.|++||+..+.. ...+ ..|.. .|.+++|+|++++|++++.|+.|++||
T Consensus 93 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 93 LR-INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFS 170 (372)
T ss_dssp CC-CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ec-CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC-CeeEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 55 78889999 999999999999999999999998762 2333 45544 899999999999999999999999999
Q ss_pred CCC
Q 028806 152 LDD 154 (203)
Q Consensus 152 ~~~ 154 (203)
++.
T Consensus 171 ~~~ 173 (372)
T 1k8k_C 171 AYI 173 (372)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=170.27 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=132.3
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecC---CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
++|+| ++++|++++.|+.|++|++.+. .+..+.. +...|.+++|+|++.+|++++.|+.|++||+. +..+..+
T Consensus 124 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~ 200 (383)
T 3ei3_B 124 MKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKE 200 (383)
T ss_dssp EEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEE
T ss_pred EEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEe
Confidence 47899 7899999999999999999864 3444433 44789999999999999999999999999994 5677888
Q ss_pred eccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC----CceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEE
Q 028806 77 VGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP----NRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKL 149 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i 149 (203)
.. |...+.++ |+|++. ++++++.|+.|++||+++ +..+..+ .|.. .|.+++|+| ++.+|++++.|+.|++
T Consensus 201 ~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 201 KL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK-PVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp EC-SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS-CEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred cc-CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC-ceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 88 99999999 999999 999999999999999997 5566666 5644 899999999 9999999999999999
Q ss_pred EeCCCcccC
Q 028806 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
||++++...
T Consensus 278 wd~~~~~~~ 286 (383)
T 3ei3_B 278 YSSYDWSKP 286 (383)
T ss_dssp EETTBTTSC
T ss_pred EECCCCccc
Confidence 999887654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=184.62 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=129.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC-eEEEeecCCccceEEE--EEeeCC-CEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN-TVQTRSEFSEEELTSV--VLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
++|+|+ ..|++|+.||+|++||+.++ .+...+..|...|.++ +|+|++ .+|++++.|++|++||++. ..+...+
T Consensus 272 v~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~~ 349 (524)
T 2j04_B 272 FDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKTT 349 (524)
T ss_dssp EEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCEE
T ss_pred EEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCccccc
Confidence 467875 48999999999999999875 3445678899999999 567887 8999999999999999975 4555566
Q ss_pred eccCCC--ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 77 VGLSPN--SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 77 ~~~~~~--~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+ |.. .+.++ |+|++..+++++.++.|++||++++.++..+.+|.. .|++++|+|++++|++|+.|++|++||+.
T Consensus 350 ~~-~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 350 VS-RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EE-ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred cc-ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 55 543 47788 999999999999999999999999988888888865 89999999999999999999999999986
Q ss_pred Cc
Q 028806 154 DI 155 (203)
Q Consensus 154 ~~ 155 (203)
..
T Consensus 428 ~~ 429 (524)
T 2j04_B 428 RR 429 (524)
T ss_dssp SS
T ss_pred Hh
Confidence 54
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-26 Score=174.93 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=137.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++|++.+++.+..+..|...|.+++|+|++ ++++++.++.|++||+.. +..+..+.. +
T Consensus 253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~-~ 329 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIV-D 329 (425)
T ss_dssp EEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEEC-T
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEeEeccc-C
Confidence 4789999999999999999999999988888888899999999999999 999999999999999975 567777787 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc--------------------eeeeeccCCCC-ceEEEEEeCCCCeE
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNR--------------------IIQPIAEHSEY-PIESLALSHDRKFL 138 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~--------------------~~~~~~~~~~~-~i~~i~~~~~~~~l 138 (203)
...+.++ |+|++.+|++++.+|.|++|++.++. .+..+..|... .|.+++|+|++++|
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 409 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKI 409 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEE
T ss_pred CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceE
Confidence 8999999 99999999999999999999999887 88888888443 79999999999999
Q ss_pred EEEeCCCcEEEEeCC
Q 028806 139 GSISHDSMLKLWDLD 153 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~ 153 (203)
++++.||.|++|+++
T Consensus 410 ~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 410 SVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEESSSCCEEEECC
T ss_pred EEEecCceEEEEeec
Confidence 999999999999986
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-25 Score=165.87 Aligned_cols=153 Identities=14% Similarity=0.195 Sum_probs=137.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|++++|++++.|+.|++|++.+++ ....+..|...|.+++|+|++++|++++.++.|++||+.. +..+..+..
T Consensus 103 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~ 181 (337)
T 1gxr_A 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQG 181 (337)
T ss_dssp EEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC
T ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceeeeeec
Confidence 4789999999999999999999999876 5667778889999999999999999999999999999975 566777888
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...+.++ |+|+++++++++.++.|++||+++++.+..+... . .+.+++|+|++++|++++.++.|++||+++...
T Consensus 182 -~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 182 -HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-S-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-S-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred -ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC-C-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence 89999999 9999999999999999999999999888777543 4 799999999999999999999999999987654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=175.24 Aligned_cols=156 Identities=12% Similarity=0.216 Sum_probs=135.8
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++|+| ++.+|++++.|+.|++||++++ ..+..+..|...|++++|+|++. +|++++.|+.|++||++.....+..
T Consensus 237 v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence 46899 6789999999999999999976 45667778999999999999886 6889999999999999875677888
Q ss_pred eeccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC--------------CceeeeeccCCCCceEEEEEeCCCC-eE
Q 028806 76 FVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP--------------NRIIQPIAEHSEYPIESLALSHDRK-FL 138 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~--------------~~~~~~~~~~~~~~i~~i~~~~~~~-~l 138 (203)
+.. |...+.++ |+|++. +|++++.++.|++||+.. .+.+..+.+|.. .|.+++|+|++. +|
T Consensus 317 ~~~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l 394 (430)
T 2xyi_A 317 FES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWII 394 (430)
T ss_dssp EEC-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEE
T ss_pred eec-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEE
Confidence 888 99999999 999985 688999999999999986 356677777855 799999999998 89
Q ss_pred EEEeCCCcEEEEeCCCcccC
Q 028806 139 GSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~ 158 (203)
++++.|+.|++|++......
T Consensus 395 ~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 395 CSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp EEEETTSEEEEEEECHHHHC
T ss_pred EEEECCCCEEEeEccccccc
Confidence 99999999999999876554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=168.11 Aligned_cols=154 Identities=17% Similarity=0.239 Sum_probs=133.8
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-ccc
Q 028806 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCS 73 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~ 73 (203)
|+|+|+ +++|++++.||.|++|++.+++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.... ...
T Consensus 61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 140 (379)
T 3jrp_A 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 140 (379)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE
T ss_pred EEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee
Confidence 468877 8999999999999999999986 66778889999999999999 9999999999999999997542 233
Q ss_pred eeeeccCCCceeEE-Eee-------------CCCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCCceEEEEEeCC-
Q 028806 74 DRFVGLSPNSVDAL-LKL-------------DEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHD- 134 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~-------------~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~i~~i~~~~~- 134 (203)
..+.. |...+.++ |+| ++.++++++.|+.|++||++++. ....+..|.. .|.+++|+|+
T Consensus 141 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~ 218 (379)
T 3jrp_A 141 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 218 (379)
T ss_dssp EEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred EEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCC
Confidence 45566 88899999 999 69999999999999999998764 4456777855 8999999999
Q ss_pred --CCeEEEEeCCCcEEEEeCCCcc
Q 028806 135 --RKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 135 --~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+|++++.|+.|++||+++..
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTT
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCC
Confidence 8999999999999999998863
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=166.07 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=125.8
Q ss_pred ccccc--CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|+++ ..++++++.|+.|++|++.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.. ...+..+..
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~- 255 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDG- 255 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEEC-
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecC-
Confidence 45554 45788999999999999999999999999999999999999999999999999999999985 456666664
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec---------cCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA---------EHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
...+.++ |+|++. +++++.++.|++||++++..+..+. .|.. .|.+++|+|++++|++++.||.|+|
T Consensus 256 -~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 256 -GDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-QCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp -SSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCC-CEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -CceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCC-CEEEEEECCCCCEEEEEeCCCEEEE
Confidence 5678888 888765 5566679999999998877665543 4534 7999999999999999999999999
Q ss_pred EeCCCcc
Q 028806 150 WDLDDIL 156 (203)
Q Consensus 150 wd~~~~~ 156 (203)
||++++.
T Consensus 333 W~~~tGt 339 (340)
T 4aow_A 333 WQVTIGT 339 (340)
T ss_dssp EEEEC--
T ss_pred EeCCCcC
Confidence 9998875
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=175.67 Aligned_cols=154 Identities=12% Similarity=0.159 Sum_probs=128.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-----------EEEeecCCc------------cceEEEEEeeCC--CEEEEe
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----------VQTRSEFSE------------EELTSVVLMKNG--RKVVCG 55 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 55 (203)
|+|+|+|++||+|+.||.|+||++.++. ....+.+|. ..|.+++|+|++ ..|+++
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~ 113 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLS 113 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEe
Confidence 5799999999999999999999998766 477888888 889999999998 799999
Q ss_pred cCCCeEEEEEcCCcccc--------------------------------------cee-eeccCCCceeEE-EeeCCCEE
Q 028806 56 SQSGTVLLYSWGYFKDC--------------------------------------SDR-FVGLSPNSVDAL-LKLDEDRV 95 (203)
Q Consensus 56 ~~d~~i~~wd~~~~~~~--------------------------------------~~~-~~~~~~~~v~~~-~~~~~~~l 95 (203)
+.|+.|++|++...... ... ..+ |...|.++ |+|++++|
T Consensus 114 s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l 192 (447)
T 3dw8_B 114 TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA-HTYHINSISINSDYETY 192 (447)
T ss_dssp ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC-CSSCCCEEEECTTSSEE
T ss_pred CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC-CCcceEEEEEcCCCCEE
Confidence 99999999998642110 012 246 88899999 99999999
Q ss_pred EEEcCCCcEEEEEccC-Cceee-------eeccCCCCceEEEEEeCCC-CeEEEEeCCCcEEEEeCCCccc
Q 028806 96 ITGSENGLISLVGILP-NRIIQ-------PIAEHSEYPIESLALSHDR-KFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 96 ~~~~~d~~i~~~d~~~-~~~~~-------~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+++ .|+.|++||+++ +..+. .+..|.. .|.+++|+|++ ++|++++.|+.|++||++++..
T Consensus 193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE-VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC-CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEe-CCCeEEEEECCCCCceeeeeecccccccccCc-ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 998 799999999984 44444 3556755 89999999998 9999999999999999988764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=167.89 Aligned_cols=155 Identities=10% Similarity=0.169 Sum_probs=139.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++|+|++++|++++.+|.|++||+.+ ...+..+..|...|.+++|+|++.+|++++.|+.|++||+.. ...+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-- 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYE-- 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE--
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-Cceeeeec--
Confidence 46899999999999999999999998 788888889999999999999999999999999999999975 45555555
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCC--------------cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENG--------------LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~--------------~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
+...+..+ |+|++.++++++.++ .+++||+.+++.+..+..|.. .|.+++|+|++++|++++.|
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-PLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETT
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC-cEEEEEECCCCCEEEEEcCC
Confidence 56778888 999999999999888 899999999999999999965 89999999999999999999
Q ss_pred CcEEEEeCCCcccCC
Q 028806 145 SMLKLWDLDDILKGS 159 (203)
Q Consensus 145 ~~i~iwd~~~~~~~~ 159 (203)
|.|++|++.+.....
T Consensus 337 g~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 337 GFIRLHHFEKSYFDF 351 (369)
T ss_dssp SEEEEEEECHHHHTC
T ss_pred CeEEEEECccccchh
Confidence 999999998766543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=169.19 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=134.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--cceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~ 76 (203)
++|+|++++|++++.|+.|++|++.+++... .+..|...|.+++|+|++++|++++.++.|++||+..... ....+
T Consensus 58 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 137 (372)
T 1k8k_C 58 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 137 (372)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred EEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence 4799999999999999999999998886543 3467888999999999999999999999999999975332 12233
Q ss_pred -eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEc------------------cCCceeeeeccCCCCceEEEEEeCCCC
Q 028806 77 -VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGI------------------LPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 77 -~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~------------------~~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
.. |...+.++ |+|++.+|++++.++.|++||+ ..++.+..+..|.. .|.+++|+|+++
T Consensus 138 ~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 215 (372)
T 1k8k_C 138 KKP-IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGS 215 (372)
T ss_dssp CTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSS
T ss_pred ecc-cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCC
Confidence 44 68889999 9999999999999999999995 36778888888855 899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCcccC
Q 028806 137 FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+|++++.|+.|++||++++...
T Consensus 216 ~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EEEEEETTTEEEEEEGGGTTEE
T ss_pred EEEEEeCCCEEEEEECCCCcee
Confidence 9999999999999999877644
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=174.02 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=132.9
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCe----EEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcc-----
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK----- 70 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~----- 70 (203)
+++|+...+ ++++.+|.|+||++.... ....+.+|...|.+++|+| ++.+|++++.|+.|++|++....
T Consensus 41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~ 120 (402)
T 2aq5_A 41 AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120 (402)
T ss_dssp EECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB
T ss_pred EECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc
Confidence 456666544 457889999999997642 2345678999999999999 89999999999999999997532
Q ss_pred -ccceeeeccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEccCCceeeee--ccCCCCceEEEEEeCCCCeEEEEeCCC
Q 028806 71 -DCSDRFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGILPNRIIQPI--AEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 71 -~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
..+..+.+ |...|.++ |+|++ .+|++++.|+.|++||+++++.+..+ ..|.. .|.+++|+|++++|++++.|+
T Consensus 121 ~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~ 198 (402)
T 2aq5_A 121 REPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-TIYSVDWSRDGALICTSCRDK 198 (402)
T ss_dssp CSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-CEEEEEECTTSSCEEEEETTS
T ss_pred CCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-ceEEEEECCCCCEEEEEecCC
Confidence 45677888 99999999 99998 69999999999999999999999888 77755 899999999999999999999
Q ss_pred cEEEEeCCCcccC
Q 028806 146 MLKLWDLDDILKG 158 (203)
Q Consensus 146 ~i~iwd~~~~~~~ 158 (203)
.|++||++++...
T Consensus 199 ~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 199 RVRVIEPRKGTVV 211 (402)
T ss_dssp EEEEEETTTTEEE
T ss_pred cEEEEeCCCCcee
Confidence 9999999887654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=167.11 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=125.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC---------CCeEEEeec-CCccceEEEEEee--CCCEEEEecCCCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR---------KNTVQTRSE-FSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~ 68 (203)
+.|+|. +++++.|++|++|+.. +++.+..+. .|...|.+++|+| ++++|++++.|+.|++||+..
T Consensus 82 ~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 158 (343)
T 3lrv_A 82 GGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED 158 (343)
T ss_dssp TCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS
T ss_pred eeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC
Confidence 356777 8999999999999765 444344443 5668899999999 999999999999999999985
Q ss_pred ccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee-eeecc-CCCCceEEEEEeCCCCeEEEEeCCC
Q 028806 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII-QPIAE-HSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
+.........+...+.++ |+|++.+|++|+.||.|++||+++++.+ ..+.. |.. +|.+++|+|++.+|++++ ++
T Consensus 159 -~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~fs~~g~~l~s~~-~~ 235 (343)
T 3lrv_A 159 -DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-KIKEVKFADNGYWMVVEC-DQ 235 (343)
T ss_dssp -SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-CEEEEEECTTSSEEEEEE-SS
T ss_pred -CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-CEEEEEEeCCCCEEEEEe-CC
Confidence 444444433145578899 9999999999999999999999999877 77887 755 899999999999999999 55
Q ss_pred cEEEEeCCCcccCC
Q 028806 146 MLKLWDLDDILKGS 159 (203)
Q Consensus 146 ~i~iwd~~~~~~~~ 159 (203)
.|++||+++.....
T Consensus 236 ~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 236 TVVCFDLRKDVGTL 249 (343)
T ss_dssp BEEEEETTSSTTCB
T ss_pred eEEEEEcCCCCcce
Confidence 99999999876543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=191.45 Aligned_cols=149 Identities=11% Similarity=0.115 Sum_probs=125.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE----E--eec-----CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ----T--RSE-----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~----~--~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
++|+|++++|++|+.|++|++||+.++... . .+. +|...|.+++|+|++++|++++.|++|++|++...
T Consensus 441 v~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 441 KLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred ccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 478999999999999999999999876321 1 111 68889999999999999999999999999999643
Q ss_pred c--------------------------------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcE
Q 028806 70 K--------------------------------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLI 104 (203)
Q Consensus 70 ~--------------------------------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i 104 (203)
. .++..+.. |...|+++ |+|+| +|++|+.|+.|
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-h~~~V~svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA-NKGKTSAINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC-CSCSEEEEEECBTS-EEEEEETTSEE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc-CCCcEEEEEecCCc-EEEEEeCCCcE
Confidence 1 12556777 89999999 99999 99999999999
Q ss_pred EEEEccCCceee-----eec-cCCCCceEEEEEe-----CCC---CeEEEEeCCCcEEEEeC
Q 028806 105 SLVGILPNRIIQ-----PIA-EHSEYPIESLALS-----HDR---KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 105 ~~~d~~~~~~~~-----~~~-~~~~~~i~~i~~~-----~~~---~~l~~~~~d~~i~iwd~ 152 (203)
++||+++...+. .+. +|.. .|++++|+ ||| ++|++++.|++|++||+
T Consensus 599 ~lwd~~~~~~~~~~~~~~~~~gh~~-~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 599 MLIDRRGPAIIYMENIREISGAQSA-CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEETTTTEEEEEEEGGGTCSSCCC-CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEECCCCeEEEEeehhHhcccccc-ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 999998776653 232 6755 79999999 885 89999999999999999
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=167.81 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=128.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee---CCCEEEEecCCCeEEEEEcCCccccceeee-
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
+|+|++++|++++.|+.|++||+.+++.... ..|...|.+++|+| ++.+|++++.++.|++||+.. +.....+.
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~ 252 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFAS 252 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEE
T ss_pred ccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceee
Confidence 4889999999999999999999999887544 55788999999999 899999999999999999975 34444443
Q ss_pred ----ccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCC-------------------ceeeeeccCCCCceEEEEEe
Q 028806 78 ----GLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPN-------------------RIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 78 ----~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~-------------------~~~~~~~~~~~~~i~~i~~~ 132 (203)
. |...+.++ |+|++. ++++++.||.|++||++.+ +.+..+..|.. +|.+++|+
T Consensus 253 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~~~~s 330 (357)
T 3i2n_A 253 VSEKA-HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-PISSLDWS 330 (357)
T ss_dssp EEEEC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-CEEEEEEC
T ss_pred eccCC-CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC-CeeEEEEc
Confidence 7 88999999 999998 8999999999999999854 35666777855 89999999
Q ss_pred CCCCeEE-EEeCCCcEEEEeCCCcc
Q 028806 133 HDRKFLG-SISHDSMLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~~~l~-~~~~d~~i~iwd~~~~~ 156 (203)
|++++|+ +++.|+.|++||+.+..
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999998 79999999999998654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=168.27 Aligned_cols=154 Identities=12% Similarity=0.120 Sum_probs=124.1
Q ss_pred Ccccc--cCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAA--DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
++|+| +++++++++.|++|++||+.+++...... .+...+.+++|+|++.+|++|+.|+.|++||++........+.
T Consensus 131 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 210 (343)
T 3lrv_A 131 MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP 210 (343)
T ss_dssp EECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC
T ss_pred EEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe
Confidence 46899 99999999999999999999988866654 4455799999999999999999999999999986433314444
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc---CCCCceE--EEEEeCCCCeEEEEeC-CCcEEEE
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE---HSEYPIE--SLALSHDRKFLGSISH-DSMLKLW 150 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~i~--~i~~~~~~~~l~~~~~-d~~i~iw 150 (203)
..|..+|.++ |+|++.+|++++. +.|++||+++++.+..+.. |. ..+. +++|+|++++|++++. |+.|++|
T Consensus 211 ~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 211 VDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPE-FKTGTVTYDIDDSGKNMIAYSNESNSLTIY 288 (343)
T ss_dssp CCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeeccccccc-ccccceEEEECCCCCEEEEecCCCCcEEEE
Confidence 2278899999 9999999999994 5999999998877655543 21 1333 6999999999999998 9999999
Q ss_pred eCCCcc
Q 028806 151 DLDDIL 156 (203)
Q Consensus 151 d~~~~~ 156 (203)
++.+..
T Consensus 289 ~~~~~~ 294 (343)
T 3lrv_A 289 KFDKKT 294 (343)
T ss_dssp EECTTT
T ss_pred EEcccc
Confidence 986543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=180.14 Aligned_cols=155 Identities=12% Similarity=0.028 Sum_probs=129.7
Q ss_pred Cccccc------CCEEEEEcCCCeEEEEEcCCCeE-----------EEeecCCccceEEEEEeeCCCEEEEecCCCeEEE
Q 028806 1 MTFAAD------AMKLLGTSGDGTLSVCNLRKNTV-----------QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 1 l~~sp~------~~~l~~~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 63 (203)
|+|+|+ +.+||+++.||+|++|++.++.. ...+.+|...|++++|+++ ..|++|+.||+|++
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~l 291 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAE 291 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEE
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEE
Confidence 468876 67999999999999999976531 2356788899999999986 48999999999999
Q ss_pred EEcCCccccceeeeccCCCceeEE---EeeCC-CEEEEEcCCCcEEEEEccCCceeeeeccCCC-CceEEEEEeCCCCeE
Q 028806 64 YSWGYFKDCSDRFVGLSPNSVDAL---LKLDE-DRVITGSENGLISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFL 138 (203)
Q Consensus 64 wd~~~~~~~~~~~~~~~~~~v~~~---~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l 138 (203)
||+.....+...+.. |...|.++ |+|++ .+|++++.|++|+|||++++++...+.+|.. ..|.+++|+|+++.|
T Consensus 292 WD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 292 FDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370 (524)
T ss_dssp EETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred EECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence 999854445566788 99999998 36677 8999999999999999998887777766643 247899999999999
Q ss_pred EEEeCCCcEEEEeCCCccc
Q 028806 139 GSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~ 157 (203)
++++.|+.|++||++++..
T Consensus 371 ~s~~~d~tv~lwd~~~~~~ 389 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFA 389 (524)
T ss_dssp EEECSSSEEEEEETTCTTC
T ss_pred EEeCCCCcEEEEECccccc
Confidence 9999999999999988764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-26 Score=171.14 Aligned_cols=152 Identities=13% Similarity=0.160 Sum_probs=133.1
Q ss_pred Cccccc----CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAAD----AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~----~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++|+|+ +++|++++.||.|++|++.+++.+..+..|...|.+++|+| ++.+|++++.|+.|++||+.. +..+..
T Consensus 75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~ 153 (366)
T 3k26_A 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAI 153 (366)
T ss_dssp EEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-TEEEEE
T ss_pred EEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-CeEEEE
Confidence 468888 67999999999999999999999999999999999999999 899999999999999999975 455555
Q ss_pred e---eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc----------------------------CCC
Q 028806 76 F---VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE----------------------------HSE 123 (203)
Q Consensus 76 ~---~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----------------------------~~~ 123 (203)
+ .. |...+.++ |+|++.+|++++.|+.|++||+++++....+.. |..
T Consensus 154 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 154 FGGVEG-HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp ECSTTS-CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred eccccc-ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 5 56 88899999 999999999999999999999987765544332 644
Q ss_pred CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 124 YPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 124 ~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.|.+++|+ +.+|++++.|+.|++||+++...
T Consensus 233 -~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 233 -YVDCVRWL--GDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp -CCCEEEEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred -eEEEEEEc--CCEEEEEecCCEEEEEeCCCccc
Confidence 89999998 77999999999999999987654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=167.13 Aligned_cols=154 Identities=14% Similarity=0.223 Sum_probs=132.0
Q ss_pred Cccccc----CCEEEEEcCCCeEEEEEcCCCeEEEeecC-----CccceEEEEEeeC----CCEEEEecCCCeEEEEEcC
Q 028806 1 MTFAAD----AMKLLGTSGDGTLSVCNLRKNTVQTRSEF-----SEEELTSVVLMKN----GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~----~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~d~~i~~wd~~ 67 (203)
|+|+|+ ...+++++.++.|++|++.++..+..+.. |...|.+++|+|+ +.+|++++.|+.|++||+.
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 103 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI 103 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch
Confidence 468874 45666666678999999997765554442 5578999999999 6799999999999999997
Q ss_pred CccccceeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeee---ccCCCCceEEEEEeCCCCeEEEEe
Q 028806 68 YFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
. +..+..+.. |...|.++ |+| ++.+|++++.||.|++||+++++.+..+ ..|.. .|.+++|+|++++|++++
T Consensus 104 ~-~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 104 T-MQCIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD-EVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp T-CCEEEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-CEEEEEECTTSSEEEEEE
T ss_pred h-ceEeeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC-ceeEEEECCCCCEEEEec
Confidence 5 577788888 99999999 999 9999999999999999999999988887 56754 899999999999999999
Q ss_pred CCCcEEEEeCCCccc
Q 028806 143 HDSMLKLWDLDDILK 157 (203)
Q Consensus 143 ~d~~i~iwd~~~~~~ 157 (203)
.|+.|++||++++..
T Consensus 181 ~dg~i~i~d~~~~~~ 195 (366)
T 3k26_A 181 MDHSLKLWRINSKRM 195 (366)
T ss_dssp TTSCEEEEESCSHHH
T ss_pred CCCCEEEEECCCCcc
Confidence 999999999987754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-25 Score=166.24 Aligned_cols=111 Identities=13% Similarity=0.164 Sum_probs=96.3
Q ss_pred Cccccc---CCEEEEEcCCCeEEEEEcCC-CeEE-EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAAD---AMKLLGTSGDGTLSVCNLRK-NTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~---~~~l~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
|+|+|+ |++|++++.||.|++|++.+ +..+ ..+..|...|.+++|+|++++|++++.|+.|++||+.. +... .
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~-~ 122 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-NQAI-Q 122 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEE-E
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC-CCce-e
Confidence 579998 69999999999999999986 4444 77788999999999999999999999999999999974 3433 4
Q ss_pred eeccCCCceeEE-E--eeCCCEEEEEcCCCcEEEEEccCCce
Q 028806 76 FVGLSPNSVDAL-L--KLDEDRVITGSENGLISLVGILPNRI 114 (203)
Q Consensus 76 ~~~~~~~~v~~~-~--~~~~~~l~~~~~d~~i~~~d~~~~~~ 114 (203)
+.. |...+.++ | +|++.+|++++.|+.|++||+++++.
T Consensus 123 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 123 IAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred ecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence 566 88999999 8 88999999999999999999876643
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=169.33 Aligned_cols=155 Identities=20% Similarity=0.267 Sum_probs=134.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcccc------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDC------ 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~------ 72 (203)
++|+|++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+......
T Consensus 168 l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 168 LKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp EEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------
T ss_pred EEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc
Confidence 4678877 899999999999999999999999999999999999995 6789999999999999999753221
Q ss_pred ----------------ceeeeccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC
Q 028806 73 ----------------SDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 73 ----------------~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
+..+.+ |...+.++ ++++.++++++.|+.|++||+++++.+..+..|.. .|.+++|+|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 323 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRG-HMASVRTV-SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERK 323 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECC-CSSCEEEE-EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTT
T ss_pred CCcceEeeccCCCeEEEEEccC-ccceEEEE-cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCC
Confidence 334455 66666665 78899999999999999999999999999999865 899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCcccCC
Q 028806 137 FLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
+|++++.|+.|++||++++....
T Consensus 324 ~l~sg~~dg~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENGELMY 346 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEEeCCCcEEEEECCCCcEEE
Confidence 99999999999999998876543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=166.17 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=127.5
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceee--------
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRF-------- 76 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~-------- 76 (203)
++.++++++.++.|++|++.++..+..+..|...|.+++|+|++. .|++++.|+.|++||++.....+..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 566999999999999999999988888999999999999999998 58899999999999997544343333
Q ss_pred -------eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc-----------------------------------
Q 028806 77 -------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR----------------------------------- 113 (203)
Q Consensus 77 -------~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~----------------------------------- 113 (203)
.. |...+.++ |+|++.+|++++.|+.|++||+.+++
T Consensus 235 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
T 4a11_B 235 QAVESANTA-HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG 313 (408)
T ss_dssp CCTTTSSCS-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET
T ss_pred eeecccccc-ccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC
Confidence 45 77889999 99999999999999999999987543
Q ss_pred ------------eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 114 ------------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 114 ------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
.+..+.+|.. .|.+++|+|++++|++++.||.|++|++.+.++..
T Consensus 314 ~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 314 STIAVYTVYSGEQITMLKGHYK-TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TEEEEEETTTCCEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred CEEEEEECcCCcceeeeccCCC-eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 3445566754 89999999999999999999999999999877553
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=178.40 Aligned_cols=155 Identities=22% Similarity=0.308 Sum_probs=132.3
Q ss_pred CcccccC-CEEEEEcCCCeEEEEEcCC-----CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADA-MKLLGTSGDGTLSVCNLRK-----NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~-~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
|+|+|++ ++|++|+.|++|++|++.+ +.....+.+|...|.+++|+|++++|++++.|+.|++||+.. +....
T Consensus 388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~-~~~~~ 466 (694)
T 3dm0_A 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA-GVSTR 466 (694)
T ss_dssp EECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE
T ss_pred EEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-Cccee
Confidence 4678764 7999999999999999875 345667889999999999999999999999999999999974 56777
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee---ccCCCCceEEEEEeCCC--CeEEEEeCCCcEE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI---AEHSEYPIESLALSHDR--KFLGSISHDSMLK 148 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~ 148 (203)
.+.+ |...|.++ |+|++.+|++++.|+.|++||+......... ..|.. .|.+++|+|++ ..|++++.|+.|+
T Consensus 467 ~~~~-h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~d~~v~ 544 (694)
T 3dm0_A 467 RFVG-HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRD-WVSCVRFSPNTLQPTIVSASWDKTVK 544 (694)
T ss_dssp EEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSS-CEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred EEeC-CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCC-cEEEEEEeCCCCcceEEEEeCCCeEE
Confidence 8888 99999999 9999999999999999999998654333222 35644 79999999987 5799999999999
Q ss_pred EEeCCCcccC
Q 028806 149 LWDLDDILKG 158 (203)
Q Consensus 149 iwd~~~~~~~ 158 (203)
+||+++....
T Consensus 545 vwd~~~~~~~ 554 (694)
T 3dm0_A 545 VWNLSNCKLR 554 (694)
T ss_dssp EEETTTCCEE
T ss_pred EEECCCCcEE
Confidence 9999876543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=183.09 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=142.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.||.|++|++.+++.+..+..|...|++++|+|++.+|++++.|+.|++|++.........+.. |
T Consensus 61 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~ 139 (814)
T 3mkq_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-H 139 (814)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-C
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-C
Confidence 479999999999999999999999999999999999999999999999999999999999999999865466677888 8
Q ss_pred CCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC--CCCeEEEEeCCCcEEEEeCCCcc
Q 028806 81 PNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...+.++ |+| ++..+++++.+|.|++||+.++.....+..+....+.+++|+| ++.+|++++.|+.|++||+.++.
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 9999999 999 8899999999999999999988877777766545899999999 99999999999999999998765
Q ss_pred cC
Q 028806 157 KG 158 (203)
Q Consensus 157 ~~ 158 (203)
..
T Consensus 220 ~~ 221 (814)
T 3mkq_A 220 CV 221 (814)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-25 Score=171.16 Aligned_cols=155 Identities=12% Similarity=0.208 Sum_probs=129.1
Q ss_pred CcccccC--CEEEEEcCCCeEEEEEcCCCeEE---------------------------------------Ee-ecCCcc
Q 028806 1 MTFAADA--MKLLGTSGDGTLSVCNLRKNTVQ---------------------------------------TR-SEFSEE 38 (203)
Q Consensus 1 l~~sp~~--~~l~~~~~d~~i~vw~~~~~~~~---------------------------------------~~-~~~~~~ 38 (203)
|+|+|++ .+|++++.|++|++|++.++... .. ..+|..
T Consensus 99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 4789998 79999999999999998764331 12 357899
Q ss_pred ceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-------eeeccCCCceeEE-EeeCC-CEEEEEcCCCcEEEEEc
Q 028806 39 ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-------RFVGLSPNSVDAL-LKLDE-DRVITGSENGLISLVGI 109 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-------~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~~~d~ 109 (203)
.|.+++|+|++++|+++ .|+.|++||+......+. .+.. |...+.++ |+|++ .+|++++.||.|++||+
T Consensus 179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEE-LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGG-CCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccc-cCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 99999999999999998 799999999974444443 3456 88899999 99998 99999999999999999
Q ss_pred cCCce----eeeeccCCC-----------CceEEEEEeCCCCeEEEEeCCCcEEEEeCCC-cccC
Q 028806 110 LPNRI----IQPIAEHSE-----------YPIESLALSHDRKFLGSISHDSMLKLWDLDD-ILKG 158 (203)
Q Consensus 110 ~~~~~----~~~~~~~~~-----------~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~ 158 (203)
++++. +..+..|.. ..|.+++|+|++++|++++. +.|++||+++ ..+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV 320 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc
Confidence 98876 677777743 27999999999999999998 9999999987 4433
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=159.60 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=132.0
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecC-CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|+| +++++++++.|+.|++|| .......+.. |...+.+++|+|++. +++++.++.|++||+.. +..+..+..
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~- 223 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEG- 223 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEEC-
T ss_pred EEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhc-
Confidence 4666 899999999999999999 4456666666 889999999999988 89999999999999975 577788888
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|...+.++ |+|++ .+++++.++.|++||+.+++.+..+..|.. +|.+++|+|+++ +++++.|+.|++|++.+....
T Consensus 224 ~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 224 HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI-SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS-CEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc-eEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 99999999 99999 688999999999999999999999988855 899999999998 667889999999999877654
Q ss_pred C
Q 028806 159 S 159 (203)
Q Consensus 159 ~ 159 (203)
.
T Consensus 301 ~ 301 (313)
T 3odt_A 301 S 301 (313)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=167.50 Aligned_cols=155 Identities=14% Similarity=0.221 Sum_probs=130.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC-CEEEEec--CCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGS--QSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~d~~i~~wd~~~~~~~~~~~~ 77 (203)
++|+|++++|++++.|+.|++||+.++..+..+..|...|.+++|+|++ .++++++ .|+.|++||+.. +..+..+.
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~ 301 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD 301 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe
Confidence 4699999999999999999999999999988899999999999999976 5666654 799999999975 46666665
Q ss_pred ccCCCceeEE-EeeCCCEEEE--EcCCCcEEEEEccCCceee--eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 78 GLSPNSVDAL-LKLDEDRVIT--GSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~--~~~d~~i~~~d~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
+...+.++ |+|++.++++ |+.+|.|++|++.++.... .+..|.. .|.+++|+|++++|++++.||.|++|++
T Consensus 302 --~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 302 --AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT-RVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp --CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS-CCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred --CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC-CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 56788999 9999999999 4589999999999875544 3567755 8999999999999999999999999999
Q ss_pred CCcccCC
Q 028806 153 DDILKGS 159 (203)
Q Consensus 153 ~~~~~~~ 159 (203)
.++....
T Consensus 379 ~~~~~~~ 385 (401)
T 4aez_A 379 YDGDHVK 385 (401)
T ss_dssp CC-----
T ss_pred CCCcccc
Confidence 8876543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=168.73 Aligned_cols=153 Identities=16% Similarity=0.226 Sum_probs=131.5
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCe----E---EEeecCCccceEEEEEee-CCCEEEEecCCCeEEEEEcCCcc-
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNT----V---QTRSEFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYSWGYFK- 70 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~----~---~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~- 70 (203)
|+|+|++. +|++|+.||.|++|++..+. . ...+..|...|.+++|+| ++.+|++++.++.|++||++...
T Consensus 187 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp EEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 47999988 99999999999999998732 1 345668899999999999 67899999999999999998542
Q ss_pred -ccceeeeccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCC
Q 028806 71 -DCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDS 145 (203)
Q Consensus 71 -~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~ 145 (203)
..+..+.. |...+.++ |+|++. ++++++.+|.|++||+++ +.++..+..|.. .|.+++|+|++. +|++++.|+
T Consensus 267 ~~~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 267 SKPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp SSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTS
T ss_pred CcceeEeec-CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCC
Confidence 45666777 89999999 999887 688999999999999997 567788888855 899999999985 688999999
Q ss_pred cEEEEeCCCc
Q 028806 146 MLKLWDLDDI 155 (203)
Q Consensus 146 ~i~iwd~~~~ 155 (203)
.|++||+...
T Consensus 345 ~i~iwd~~~~ 354 (430)
T 2xyi_A 345 RLHVWDLSKI 354 (430)
T ss_dssp CCEEEEGGGT
T ss_pred cEEEEeCCCC
Confidence 9999999873
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-25 Score=184.63 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=131.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccc-------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS------- 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~------- 73 (203)
|+|+| +++|++++.|++|++||+.+++.+..+. |...|++++|+|++++|++|+.||.|++||+... ...
T Consensus 64 l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~-~~~~~~i~~~ 140 (902)
T 2oaj_A 64 MRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD-QLSSFKLDNL 140 (902)
T ss_dssp EEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT-EEEEEEECCH
T ss_pred EEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC-ccccceeccc
Confidence 47899 8899999999999999999998887776 5678999999999999999999999999999743 221
Q ss_pred ----eeeeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccC-----------------CCCceEEEE
Q 028806 74 ----DRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEH-----------------SEYPIESLA 130 (203)
Q Consensus 74 ----~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----------------~~~~i~~i~ 130 (203)
..+.+ |...|.++ |+|+ +..+++++.++.| +||+++++++..+..| ....|.+++
T Consensus 141 ~~~~~~~~~-h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 141 QKSSFFPAA-RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp HHHHTCSSS-CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred ccccccccc-CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence 23456 78899999 9996 5789999999999 9999999888877655 013699999
Q ss_pred EeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 131 LSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 131 ~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|+|+|++|++++.|+.|++||++++.+
T Consensus 219 fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 219 YHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp ECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 999999999999999999999988654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-24 Score=165.24 Aligned_cols=154 Identities=16% Similarity=0.234 Sum_probs=134.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc----------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---------- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---------- 70 (203)
|+|+|++++|++++.||.|++|+ .++..+..+..|...|.+++|+|++++|++++.++.|++||+....
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred EEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence 47999999999999999999999 6677788889999999999999999999999999999999986421
Q ss_pred ---------------------------------------------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcE
Q 028806 71 ---------------------------------------------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLI 104 (203)
Q Consensus 71 ---------------------------------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i 104 (203)
..+..+.. |...+.++ |+|++++|++++.++.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG-HHGPISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECC-CSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeecc-CCCceEEEEECCCCCEEEEEcCCCEE
Confidence 11122334 66788899 99999999999999999
Q ss_pred EEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 105 SLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 105 ~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
++||+++++.+..+..|.. .|.+++|+|++ +|++++.|+.|++||++++...
T Consensus 272 ~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL 323 (425)
T ss_dssp EEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE
T ss_pred EEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe
Confidence 9999999998888888855 89999999999 9999999999999999877644
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=172.36 Aligned_cols=157 Identities=10% Similarity=0.138 Sum_probs=126.4
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCC---Ce---EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC--ccc
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRK---NT---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--FKD 71 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~ 71 (203)
|+|+| ++++|++|+.||+|+||++.+ +. ....+ .|...|.+++|+|++.+|++++.|+.|++||+.. .+.
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 147 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQES 147 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETT
T ss_pred EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCc
Confidence 47999 999999999999999999876 32 12222 4889999999999999999999999999999941 223
Q ss_pred cceeeec---------c--CCCceeEE---EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc--CCCCceEEEEEeCCC
Q 028806 72 CSDRFVG---------L--SPNSVDAL---LKLDEDRVITGSENGLISLVGILPNRIIQPIAE--HSEYPIESLALSHDR 135 (203)
Q Consensus 72 ~~~~~~~---------~--~~~~v~~~---~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~i~~i~~~~~~ 135 (203)
....+.. . +...+.++ +++++.++++++.|+.|++||+++++.+..+.. |.. .|.+++|+|++
T Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~ 226 (437)
T 3gre_A 148 EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEEC 226 (437)
T ss_dssp EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTS
T ss_pred eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCC
Confidence 3222221 0 12334444 357899999999999999999999999999887 645 89999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCcccCC
Q 028806 136 KFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
++|++++.|+.|++||++++....
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEE
T ss_pred CEEEEEcCCCeEEEEEcCCccEEE
Confidence 999999999999999998876543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=167.83 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=128.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe----EEEeecCCccceEEEEEeeCC-CEEEE--ecCCCeEEEEEcCCccccce
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMKNG-RKVVC--GSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~--~~~d~~i~~wd~~~~~~~~~ 74 (203)
.|+|+++++++++.|+.|++|+..+++ .+.....|...|.+++|+|.+ ..+++ |+.|+.|++||+.+ +.+..
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~~ 315 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLS 315 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEEE
T ss_pred eecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccce
Confidence 588999999999999999999998753 345566788999999999965 45554 45799999999975 56666
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.+.. + ..+.++ |+|++..+++++ .|+.|++||+.+++++..+.+|.. .|.+++|+|+|++|++++.|++|+|||
T Consensus 316 ~~~~-~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~-~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 316 AVDA-H-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EEEC-S-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred eecc-c-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 6665 4 455666 999999988765 689999999999999999999966 899999999999999999999999999
Q ss_pred CCCcccC
Q 028806 152 LDDILKG 158 (203)
Q Consensus 152 ~~~~~~~ 158 (203)
+....+.
T Consensus 393 v~~~~~~ 399 (420)
T 4gga_A 393 CFELDPA 399 (420)
T ss_dssp CSCSSCC
T ss_pred CCCCCcc
Confidence 9765443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.2e-25 Score=172.66 Aligned_cols=147 Identities=14% Similarity=0.101 Sum_probs=121.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-----ceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-----ELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---- 71 (203)
++|||+|++||+++.||+|++|+..+ ++..+. |.. .+.+++|+|+|++|++|+.||+|++||+.....
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~ 167 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE 167 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence 57999999999999999999999544 666666 654 499999999999999999999999999975321
Q ss_pred --cceee----eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce---eeee-ccCCCCceEEEEEeCCCCeEEE
Q 028806 72 --CSDRF----VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI---IQPI-AEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 72 --~~~~~----~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~-~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
.+..+ .+ |...|.++ |+|+| +++++.|+.|++|++..+.. ..++ ..|. ..|.+++|+ +++||+
T Consensus 168 ~i~l~ti~~~~~g-h~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LAS 241 (588)
T 2j04_A 168 FYFESSIRLSDAG-SKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVL 241 (588)
T ss_dssp CEEEEEEECSCTT-CCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEE
T ss_pred ceeeeeeeccccc-ccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEE
Confidence 24555 45 66799999 99999 88889999999999987763 2455 3564 479999999 689998
Q ss_pred EeCCCcEEEEeCCCccc
Q 028806 141 ISHDSMLKLWDLDDILK 157 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~~ 157 (203)
++ ++.|++||+.++..
T Consensus 242 a~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 242 TC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp EC-SSEEEEEETTTTEE
T ss_pred Ee-CCeEEEEECCCCeE
Confidence 87 69999999988776
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=168.19 Aligned_cols=154 Identities=10% Similarity=0.215 Sum_probs=133.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC----CeEEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCcc-----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFK----- 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~----- 70 (203)
++|+|++++|++++.|+.|++|++.+ ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+....
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence 47999999999999999999999987 4577888899999999999998 8999999999999999997543
Q ss_pred -cc--ceeeeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCC-----CCceEEEEEeCCC-CeEE
Q 028806 71 -DC--SDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHS-----EYPIESLALSHDR-KFLG 139 (203)
Q Consensus 71 -~~--~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~~i~~i~~~~~~-~~l~ 139 (203)
.. ...+.. |...+.++ |+|+ +.++++++.++.|++||+++++.+..+..+. ...|.+++|+|++ .+|+
T Consensus 153 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMS-SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCC-SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccC-CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 11 122355 78889999 9998 7899999999999999999999888887762 3379999999997 6899
Q ss_pred EEeCCC---cEEEEeCCCc
Q 028806 140 SISHDS---MLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~---~i~iwd~~~~ 155 (203)
+++.|+ .|++||+++.
T Consensus 232 ~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECCSSSCCCCEEETTST
T ss_pred EEECCCCCceEEEEeCCCC
Confidence 999998 9999999886
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=169.06 Aligned_cols=155 Identities=10% Similarity=0.189 Sum_probs=133.1
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC--CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-cc
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GL 79 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~ 79 (203)
++|++++|++++.|+.|++||+.+++.+..+.. |...|.+++|+|++.+|++++.|+.|++||++. +.++..+. .
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~- 255 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFG- 255 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCT-
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecC-
Confidence 557899999999999999999999999888887 889999999999999999999999999999985 56666664 5
Q ss_pred CCCceeEE-Eee----CCCEEEEEcCCCcEEEEEccCCceeeeeccCC-------------------------CCceEEE
Q 028806 80 SPNSVDAL-LKL----DEDRVITGSENGLISLVGILPNRIIQPIAEHS-------------------------EYPIESL 129 (203)
Q Consensus 80 ~~~~v~~~-~~~----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-------------------------~~~i~~i 129 (203)
+...|.++ ++| ++.+|++++.|+.|++||+++++.+..+..|. ...|.++
T Consensus 256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 335 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335 (437)
T ss_dssp TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence 67788888 654 67799999999999999999998877776441 2258889
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 130 ALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+|+ ++++|++++.|+.|++||+.++.....
T Consensus 336 ~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 336 SVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 999 778999999999999999998876543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=163.79 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=127.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe-EEEeecCCcc----ceEEEE----EeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSEFSEE----ELTSVV----LMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
+|+|++++|++++.|+.|++|++.++. .+..+..+.. .+.+++ |+|++.+|++++.++.|++||+... ..
T Consensus 124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~ 202 (357)
T 3i2n_A 124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-AL 202 (357)
T ss_dssp GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT-EE
T ss_pred ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC-ce
Confidence 689999999999999999999999875 5566655443 788888 6789999999999999999999753 33
Q ss_pred ceeeeccCCCceeEE-Eee---CCCEEEEEcCCCcEEEEEccCCceeeeec-----cCCCCceEEEEEeCCCC-eEEEEe
Q 028806 73 SDRFVGLSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNRIIQPIA-----EHSEYPIESLALSHDRK-FLGSIS 142 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~-~l~~~~ 142 (203)
..... +...+.++ |+| ++.++++++.+|.|++||+++++.+..+. .|.. .|.+++|+|+++ +|++++
T Consensus 203 -~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 203 -RWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp -EEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEE
T ss_pred -eeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEe
Confidence 33455 78899999 999 99999999999999999998876655444 7755 899999999998 899999
Q ss_pred CCCcEEEEeCCCcccC
Q 028806 143 HDSMLKLWDLDDILKG 158 (203)
Q Consensus 143 ~d~~i~iwd~~~~~~~ 158 (203)
.|+.|++||+++....
T Consensus 280 ~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 280 GAGGLHLWKYEYPIQR 295 (357)
T ss_dssp TTSEEEEEEEECCSCC
T ss_pred CCCcEEEeecCCCccc
Confidence 9999999999876544
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-24 Score=176.56 Aligned_cols=154 Identities=17% Similarity=0.236 Sum_probs=135.2
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-ccc
Q 028806 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCS 73 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~ 73 (203)
|+|+|+ +++|++|+.||.|++|++.++. ....+..|...|.+++|+|+ +..+++++.||.|++||+.... ...
T Consensus 59 l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 59 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp EEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred EEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence 468887 9999999999999999999886 66778889999999999999 9999999999999999997542 234
Q ss_pred eeeeccCCCceeEE-Eee-------------CCCEEEEEcCCCcEEEEEccCC----ceeeeeccCCCCceEEEEEeCC-
Q 028806 74 DRFVGLSPNSVDAL-LKL-------------DEDRVITGSENGLISLVGILPN----RIIQPIAEHSEYPIESLALSHD- 134 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~-------------~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~i~~i~~~~~- 134 (203)
..+.. |...+.++ |+| ++.++++++.||.|++||++++ .....+..|.. +|.+++|+|+
T Consensus 139 ~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~ 216 (753)
T 3jro_A 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTV 216 (753)
T ss_dssp EEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCC
T ss_pred eEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCC
Confidence 45667 88899999 898 5899999999999999999877 45567778855 8999999999
Q ss_pred --CCeEEEEeCCCcEEEEeCCCcc
Q 028806 135 --RKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 135 --~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
+.+|++++.||.|++||++++.
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSS
T ss_pred CCCCEEEEEecCCEEEEecCCCCC
Confidence 8999999999999999998863
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=160.33 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=124.0
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC-------------------------------
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG------------------------------- 49 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------------- 49 (203)
++.++++.+ ++++.+++|++||+.+++.+..+. +...|.+++|+++.
T Consensus 65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 143 (355)
T 3vu4_A 65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVC 143 (355)
T ss_dssp EECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEE
T ss_pred EEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceE
Confidence 456666766 556778899999999998888776 45678888877642
Q ss_pred ----CEEEE--ecCCCeEEEEEcCCcc--------------c-cceeeeccCCCceeEE-EeeCCCEEEEEcCCCc-EEE
Q 028806 50 ----RKVVC--GSQSGTVLLYSWGYFK--------------D-CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGL-ISL 106 (203)
Q Consensus 50 ----~~l~~--~~~d~~i~~wd~~~~~--------------~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~-i~~ 106 (203)
.++++ ++.+|.|++||+.... . .+..+.+ |...|.++ |+|++.+|++++.|+. |++
T Consensus 144 ~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 144 EFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp EEETTEEEEEESSCTTCEEEEECCC------------------CCEEECC-CSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred EEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 23333 5678899999987432 0 1667888 99999999 9999999999999998 999
Q ss_pred EEccCCceeeeec-c-CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 107 VGILPNRIIQPIA-E-HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~~~~~~~-~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
||+++++++..+. + |.. .|.+++|+|++++|++++.|+.|++||++...
T Consensus 223 wd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999999999998 4 654 89999999999999999999999999997653
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-24 Score=170.97 Aligned_cols=159 Identities=14% Similarity=0.187 Sum_probs=131.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCC----eEEEeecCCccc-eEEEEEee--CCCEEEEecCCCeEEEEEcCCc----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKN----TVQTRSEFSEEE-LTSVVLMK--NGRKVVCGSQSGTVLLYSWGYF---- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~---- 69 (203)
++|+|++++|++++ ++.|++|++.++ +....+.+|... |.+++|+| ++++|++++.|+.|++||+...
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 102 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN 102 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc
Confidence 57999999999988 789999999988 788899999999 99999999 9999999999999999999522
Q ss_pred ---cccceeeec-------------------------------------------cCCCceeEE-EeeCCC-EEEEEcCC
Q 028806 70 ---KDCSDRFVG-------------------------------------------LSPNSVDAL-LKLDED-RVITGSEN 101 (203)
Q Consensus 70 ---~~~~~~~~~-------------------------------------------~~~~~v~~~-~~~~~~-~l~~~~~d 101 (203)
......+.. .|...+.++ |+|++. .+++++.+
T Consensus 103 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 182 (615)
T 1pgu_A 103 SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 182 (615)
T ss_dssp EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred cccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCC
Confidence 122233332 033445555 666665 67888889
Q ss_pred CcEEEEEccCCceeeeeccCCCC--ceEEEEEeCC-CCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 102 GLISLVGILPNRIIQPIAEHSEY--PIESLALSHD-RKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 102 ~~i~~~d~~~~~~~~~~~~~~~~--~i~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
+.|++||+.+++.+..+..|... .|.+++|+|+ +++|++++.|+.|++||++++.....
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence 99999999999999999888431 6999999999 99999999999999999988765443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=179.03 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=134.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC--CCeEEEeecCCccceEEEEEeeC--CCEEEEecCCCeEEEEEcCCcc-cccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLMKN--GRKVVCGSQSGTVLLYSWGYFK-DCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~~~ 75 (203)
++|+|++++|++|+.||.|+||++. ++.....+.+|...|++++|+|+ +++|++++.||.|++||+.... .....
T Consensus 15 l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 94 (753)
T 3jro_A 15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 94 (753)
T ss_dssp ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc
Confidence 4799999999999999999999998 45677888899999999999988 9999999999999999997532 15566
Q ss_pred eeccCCCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCc--eeeeeccCCCCceEEEEEeC-------------CCCe
Q 028806 76 FVGLSPNSVDAL-LKLD--EDRVITGSENGLISLVGILPNR--IIQPIAEHSEYPIESLALSH-------------DRKF 137 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~i~~~~-------------~~~~ 137 (203)
+.. |...|.++ |+|+ +.++++++.||.|++||++++. ....+..|.. .|.+++|+| ++.+
T Consensus 95 ~~~-h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~-~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 95 HAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS-CEEEEEECCCC---------CGGGCC
T ss_pred ccC-CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC-ceEEEEecCcccccccccccCCCCCE
Confidence 777 88999999 9999 9999999999999999998763 3445566754 899999999 5899
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 028806 138 LGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~ 156 (203)
|++++.||.|++||+++..
T Consensus 173 l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 173 FVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp EEEEETTSCEEEEEEETTT
T ss_pred EEEEECCCeEEEEeccCCc
Confidence 9999999999999998763
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=165.55 Aligned_cols=155 Identities=13% Similarity=0.155 Sum_probs=131.5
Q ss_pred Cccccc----C---CEEEEEcCCCeEEEEEcCCCeE-----EEeecCC-----ccceEEEEEe----eCCCE-EEEecCC
Q 028806 1 MTFAAD----A---MKLLGTSGDGTLSVCNLRKNTV-----QTRSEFS-----EEELTSVVLM----KNGRK-VVCGSQS 58 (203)
Q Consensus 1 l~~sp~----~---~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d 58 (203)
++|+|+ + ++|++++.|+.|++|++.++.. ...+..| ...|.+++|+ |++.+ |++++.|
T Consensus 68 ~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 468888 9 9999999999999999988765 7778877 5899999999 99999 9999999
Q ss_pred CeEEEEEcCCc-----cccce-----ee-------eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc
Q 028806 59 GTVLLYSWGYF-----KDCSD-----RF-------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE 120 (203)
Q Consensus 59 ~~i~~wd~~~~-----~~~~~-----~~-------~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 120 (203)
+.|++||+... ...+. .+ .. +...+.++ |+|++ ++++++.++.|++||+++++.+..+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT-PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSS-SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccC-CCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 99999999750 23443 44 34 67789999 99999 999999999999999999999988887
Q ss_pred ---C---CCCceEEEEEeCCCCeEEEEeCC---CcEEEEeCCCcccC
Q 028806 121 ---H---SEYPIESLALSHDRKFLGSISHD---SMLKLWDLDDILKG 158 (203)
Q Consensus 121 ---~---~~~~i~~i~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~ 158 (203)
| .. .|.+++|+|++++|++++.| +.|++||++++...
T Consensus 226 ~~~h~~~~~-~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~ 271 (397)
T 1sq9_A 226 QHSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI 271 (397)
T ss_dssp CC---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred cccccccCC-ccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence 6 55 89999999999999999999 99999999877644
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-24 Score=166.41 Aligned_cols=149 Identities=10% Similarity=0.142 Sum_probs=129.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE----eecCCccceEEEEEeeC---CCEEEEecCCCeEEEEEcCCccccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT----RSEFSEEELTSVVLMKN---GRKVVCGSQSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~ 73 (203)
|+|+|++++|++++.++.|++|++.++.... .+.+|...|.+++|+|+ +.+|++++.|+.|++||+.. +..+
T Consensus 155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~ 233 (450)
T 2vdu_B 155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIV 233 (450)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCE
T ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Ccee
Confidence 4799999999999999999999998765433 66778999999999999 99999999999999999975 4555
Q ss_pred ee-eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC------------------------CCCceE
Q 028806 74 DR-FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------------------SEYPIE 127 (203)
Q Consensus 74 ~~-~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------------------------~~~~i~ 127 (203)
.. +.+ |...|.++ |+ ++.+|++++.|+.|++||+.+++.+..+..+ ....|.
T Consensus 234 ~~~~~~-h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 234 DKWLFG-HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEECCC-CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eeeecC-CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 55 557 88999999 99 9999999999999999999999888777532 123689
Q ss_pred EEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 128 SLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 128 ~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
+++|+|++++|++++ .++.|++|++
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999999999 8999999999
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=157.49 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=137.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
++|+|++++|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+.........+.. |
T Consensus 92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~-~ 170 (340)
T 4aow_A 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES-H 170 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSS-C
T ss_pred EEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEecc-c
Confidence 469999999999999999999999998888888888888999999999999999999999999998754444444556 7
Q ss_pred CCceeEE-EeeC--CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLD--EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+..+ |+++ ..++++++.|+.|++||+++++.+..+.+|.. +|.+++|+|++++|++++.|+.|++||+++..+
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence 8888888 7654 46788999999999999999999999999965 899999999999999999999999999988765
Q ss_pred C
Q 028806 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 250 ~ 250 (340)
T 4aow_A 250 L 250 (340)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-24 Score=171.94 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=128.2
Q ss_pred CCEEEEEcC-CCeEEEEEcCCCeEE-EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce
Q 028806 7 AMKLLGTSG-DGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 7 ~~~l~~~~~-d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
+++|++++. ++.|++|++.++... ..+..|...|.+++|+|++++|++++.|+.|++||+.. +..+..+...|...+
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v 534 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKI 534 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCE
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCce
Confidence 778888888 999999999987665 67778999999999999999999999999999999975 455555543277889
Q ss_pred eEE-Eee----------CCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 85 DAL-LKL----------DEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 85 ~~~-~~~----------~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.++ |+| ++.+|++++.|+.|++|++.++ +.+..+.+|.. .|.+++|+|+++ |++++.|+.|++|++
T Consensus 535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc-ceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 999 999 9999999999999999999987 78888999965 899999999999 999999999999998
Q ss_pred CC
Q 028806 153 DD 154 (203)
Q Consensus 153 ~~ 154 (203)
.+
T Consensus 613 ~~ 614 (615)
T 1pgu_A 613 VL 614 (615)
T ss_dssp C-
T ss_pred ec
Confidence 64
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-24 Score=162.35 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=126.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEE--eeCCCEEEEecCCCeEEEEEcCCccccce----
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVL--MKNGRKVVCGSQSGTVLLYSWGYFKDCSD---- 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---- 74 (203)
|+|+|++++|++++.||.|++|++.+++.+. +..|...|.+++| +|++.+|++++.|+.|++||+.... .+.
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~ 169 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQL 169 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEEC
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEec
Confidence 4799999999999999999999999988765 4568899999999 8889999999999999999986421 111
Q ss_pred --------------------------------------------------------------------------------
Q 028806 75 -------------------------------------------------------------------------------- 74 (203)
Q Consensus 75 -------------------------------------------------------------------------------- 74 (203)
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 170 PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence
Q ss_pred ------eeeccCCC------------ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC
Q 028806 75 ------RFVGLSPN------------SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 75 ------~~~~~~~~------------~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
.+.. |.. .+.++ |+|++++|++++.||.|++||+.+++.+..+..|.. +|.+++|+|++
T Consensus 250 ~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g 327 (368)
T 3mmy_A 250 PAKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-PISACCFNHNG 327 (368)
T ss_dssp HHHHSEEEEC-SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS-CEEEEEECTTS
T ss_pred ccccceeeee-eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC-CceEEEECCCC
Confidence 1111 222 58888 999999999999999999999999999999998855 89999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCc
Q 028806 136 KFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~ 155 (203)
++|++++.|+..+.|++-..
T Consensus 328 ~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp SCEEEEECCCSTTCGGGCCT
T ss_pred CeEEEEecccccccccccCC
Confidence 99999998886666655433
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=164.73 Aligned_cols=154 Identities=9% Similarity=0.049 Sum_probs=120.5
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEE-----EeecCCccceEEEEEee--------CCCEEEEecCCCeEEEEEcCCc
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQ-----TRSEFSEEELTSVVLMK--------NGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
+++++++|++++.|++|++|++.++... ..+.+|...|.+++|+| ++++|++++.|++|++||+..
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~- 175 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD- 175 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET-
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC-
Confidence 4567788999999999999999887543 34678999999999998 789999999999999999975
Q ss_pred cccceeeeccCCCceeEE-EeeCCC-EEEEEcCCCcEEEEEccCCceeeee-------------------------ccCC
Q 028806 70 KDCSDRFVGLSPNSVDAL-LKLDED-RVITGSENGLISLVGILPNRIIQPI-------------------------AEHS 122 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~-------------------------~~~~ 122 (203)
+.++..+.. |...+.++ |+|++. +|++++.|+.|++||+++++..... .+|.
T Consensus 176 ~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 176 EGPILAGYP-LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp TEEEEEEEE-CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred CceeeeecC-CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 345555666 88899999 999874 7999999999999999876543222 2342
Q ss_pred CCceEEEEEe-CCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 123 EYPIESLALS-HDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 123 ~~~i~~i~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
. .+.++.|+ |+++.|++++.|+.+++||+.+.....
T Consensus 255 ~-~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~ 291 (393)
T 4gq1_A 255 S-SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN 291 (393)
T ss_dssp S-SCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred c-cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence 3 67888887 799999999999999999998776543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-23 Score=153.48 Aligned_cols=152 Identities=17% Similarity=0.248 Sum_probs=129.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|+||+++ +||+| .|++|+|||+.+++++..+. .|...|.+++|+|++++|++|+.|+.|++|++.+ +..+..+.+
T Consensus 31 l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-~~~~~~~~~ 107 (318)
T 4ggc_A 31 VDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRNMTS 107 (318)
T ss_dssp EEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC-ceeEEEecC
Confidence 4789876 67766 58999999999998877664 5777899999999999999999999999999985 577778888
Q ss_pred cCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCC-ceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPN-RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
|...+.++ ++++..+++++.++.+.+|+.... ..+..+..|.. .+..+.+++++++|++++.|+.|++||++++..
T Consensus 108 -h~~~~~~~-~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 108 -HSARVGSL-SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp -CSSCEEEE-EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred -ccceEEEe-ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccC-ceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 87766554 667789999999999999998765 45566778855 899999999999999999999999999988764
Q ss_pred C
Q 028806 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 185 ~ 185 (318)
T 4ggc_A 185 G 185 (318)
T ss_dssp B
T ss_pred c
Confidence 4
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=161.90 Aligned_cols=152 Identities=16% Similarity=0.241 Sum_probs=128.7
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEee-------------cCCccceEEEEEee-CCCEEEEecCCCeEEEEE
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-------------EFSEEELTSVVLMK-NGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~-------------~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd 65 (203)
|+|+| ++++|++++.||.|++|++.++.....+ ..|...|.+++|+| ++.+|++++.|+.|++||
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 128 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEee
Confidence 57999 9999999999999999999876433222 24889999999999 778999999999999999
Q ss_pred cCCccccceeeeccCCCceeEE-Eee---CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe-EEE
Q 028806 66 WGYFKDCSDRFVGLSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGS 140 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~ 140 (203)
+.. +.....+. +...+.++ ++| ++.++++++.++.|++||+++++.+..+..|.. .|.+++|+|++.+ |++
T Consensus 129 ~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ll~~ 204 (408)
T 4a11_B 129 TNT-LQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVSWSPRYDYILAT 204 (408)
T ss_dssp TTT-TEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-CEEEEEECSSCTTEEEE
T ss_pred CCC-Cccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-cEEEEEECCCCCcEEEE
Confidence 974 45555544 56677777 766 556999999999999999999999999998865 8999999999985 889
Q ss_pred EeCCCcEEEEeCCCcc
Q 028806 141 ISHDSMLKLWDLDDIL 156 (203)
Q Consensus 141 ~~~d~~i~iwd~~~~~ 156 (203)
++.|+.|++||+++..
T Consensus 205 ~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 205 ASADSRVKLWDVRRAS 220 (408)
T ss_dssp EETTSCEEEEETTCSS
T ss_pred EcCCCcEEEEECCCCC
Confidence 9999999999998765
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-23 Score=161.58 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=133.9
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
++++++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+ +..+..+.. |.
T Consensus 275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~-h~ 352 (464)
T 3v7d_B 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQG-HT 352 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECC-CS
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeC-CC
Confidence 3567899999999999999999999999999999999999999999999999999999999999975 577888888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
..+.++ ++ +.++++++.||.|++||+.++........ ...+..++|+|++++|++++ |+.|++||++++....
T Consensus 353 ~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC--TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC--CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 999988 65 68999999999999999998876665543 22677889999999999998 8999999999887554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=158.22 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=125.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEc-CCcccccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSW-GYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~-~~~~~~~~~ 75 (203)
++|+|++++|++++.|+.|++|++.++. ....+..|...|.+++|+|+++ +|++++.++.|++||+ ... .. ..
T Consensus 17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~-~~ 94 (342)
T 1yfq_A 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP-SF-QA 94 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS-SE-EE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC-ce-Ee
Confidence 4799999999999999999999998765 3345557889999999999999 9999999999999999 643 22 22
Q ss_pred eec-cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC---------CceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 76 FVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP---------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 76 ~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
+.. .|...|.++ |+| +.++++++.|+.|++||+++ ++++..+. +.. .|.+++|+|++ +++++.+
T Consensus 95 ~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~--l~~~~~d 169 (342)
T 1yfq_A 95 LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN-KIFTMDTNSSR--LIVGMNN 169 (342)
T ss_dssp CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC-CEEEEEECSSE--EEEEEST
T ss_pred ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC-ceEEEEecCCc--EEEEeCC
Confidence 221 056789999 999 99999999999999999988 77777776 544 89999999987 8999999
Q ss_pred CcEEEEeCCC
Q 028806 145 SMLKLWDLDD 154 (203)
Q Consensus 145 ~~i~iwd~~~ 154 (203)
+.|++||+++
T Consensus 170 ~~i~i~d~~~ 179 (342)
T 1yfq_A 170 SQVQWFRLPL 179 (342)
T ss_dssp TEEEEEESSC
T ss_pred CeEEEEECCc
Confidence 9999999988
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=150.71 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=130.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc--ccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK--DCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~ 78 (203)
|+| |++++|++++.||.|++|++.++.....+..|...|.+++|+|++.+|++++.|+.+++|++.... ..+..+..
T Consensus 24 ~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~ 102 (313)
T 3odt_A 24 VVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG 102 (313)
T ss_dssp EEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC
T ss_pred EEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhh
Confidence 467 899999999999999999999998888888899999999999999999999999999999986432 44667777
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC-CCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH-DRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|...+.++ | ++.++++++.++.|++|| .++....+..|.. ++.++.|.| ++.+|++++.|+.|++||.....
T Consensus 103 -~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 176 (313)
T 3odt_A 103 -HQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQNDKVI 176 (313)
T ss_dssp -CSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEETTEEE
T ss_pred -cccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEecCceE
Confidence 88999988 6 678999999999999999 6778888888855 899999998 89999999999999999955443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=158.23 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=129.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC---------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC-cc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY-FK 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~ 70 (203)
|+|+| +++|++++.|+.|++|++.+ ++++..+. |...|.+++|+|++ +++++.++.|++||+.. ..
T Consensus 107 l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 107 ICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp EEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTT
T ss_pred EEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccc
Confidence 46889 99999999999999999987 65555555 78899999999887 89999999999999975 32
Q ss_pred ccce-eeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCC------ceeeeeccCCC--------CceEEEEEeC
Q 028806 71 DCSD-RFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPN------RIIQPIAEHSE--------YPIESLALSH 133 (203)
Q Consensus 71 ~~~~-~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~~--------~~i~~i~~~~ 133 (203)
.... .... +...+.++ |+| ++.++++++.+|.|++|++... +....+..|.. ..|.+++|+|
T Consensus 183 ~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 183 DNGTIEESG-LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261 (342)
T ss_dssp CCCEEEECS-CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred ccceeeecC-CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC
Confidence 2222 3344 67789999 999 9999999999999999999876 67777777632 2799999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCcccCC
Q 028806 134 DRKFLGSISHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~~~~~~~~ 159 (203)
++++|++++.||.|++||+.++....
T Consensus 262 ~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 262 RHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp TTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCEEEEecCCceEEEEcCccHhHhh
Confidence 99999999999999999998876543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-23 Score=177.74 Aligned_cols=155 Identities=18% Similarity=0.267 Sum_probs=136.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee--CCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.. +.+...+.+
T Consensus 663 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~ 741 (1249)
T 3sfz_A 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRNTMFG 741 (1249)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS-SSEEEEECC
T ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC-cchhheecC
Confidence 47999999999999999999999999999999999999999999999 556899999999999999975 577778888
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec--------------------------------------
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-------------------------------------- 119 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------------------------------------- 119 (203)
|...|.++ |+|++.++++++.||.|++||+.++.....+.
T Consensus 742 -h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~ 820 (1249)
T 3sfz_A 742 -HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 820 (1249)
T ss_dssp -CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred -CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence 99999999 99999999999999999999998765443321
Q ss_pred -----------------cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 120 -----------------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 120 -----------------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.|. ..|.+++|+|+++++++++.++.|++|++.++...
T Consensus 821 v~~~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~ 875 (1249)
T 3sfz_A 821 VLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV 875 (1249)
T ss_dssp EEEEETTTCCEEEEEECSSS-SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEE
T ss_pred EEEEEecCCCceeEEcCCCC-CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 342 37889999999999999999999999999876543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=157.82 Aligned_cols=154 Identities=13% Similarity=0.201 Sum_probs=133.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|+|++|++|+.||+|+||++.+++.+..+.+|...+.++.+ ++..|++++.|+.+++||.......+..+.+ |
T Consensus 153 v~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~-h 229 (420)
T 4gga_A 153 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG-H 229 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-C
T ss_pred EEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecc-c
Confidence 579999999999999999999999999999999999999988876 4679999999999999999876667778888 9
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc----eeeeeccCCCCceEEEEEeCCCC-eEEEE--eCCCcEEEEeC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNR----IIQPIAEHSEYPIESLALSHDRK-FLGSI--SHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~i~~i~~~~~~~-~l~~~--~~d~~i~iwd~ 152 (203)
...+..+ ++|++.++++++.|+.|++|+..+++ .+.....|.. .|.+++|+|.+. .++++ +.|+.|++||+
T Consensus 230 ~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS-CEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred ccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCC-ceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 9999999 89999999999999999999998765 3445566644 899999999765 45543 47999999999
Q ss_pred CCcccC
Q 028806 153 DDILKG 158 (203)
Q Consensus 153 ~~~~~~ 158 (203)
.++...
T Consensus 309 ~t~~~~ 314 (420)
T 4gga_A 309 CSGACL 314 (420)
T ss_dssp TTTEEE
T ss_pred Cccccc
Confidence 987654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=157.40 Aligned_cols=148 Identities=18% Similarity=0.258 Sum_probs=129.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
++++++++|++|+.||+|++|++.+++.+..+.+|...|.+++|+ +.++++++.|+.|++||+.+ +..+..+.. |.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~-h~ 199 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET-GECIHTLYG-HT 199 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-TEEEEEECC-CS
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc-CcEEEEECC-CC
Confidence 366789999999999999999999999999999999999999997 67999999999999999975 567778888 88
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+.++ + ++..+++++.||.|++||+.+++.+..+..|.. .|.++.| ++.+|++++.|+.|++||++++...
T Consensus 200 ~~v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~ 272 (445)
T 2ovr_B 200 STVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL 272 (445)
T ss_dssp SCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred CcEEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe
Confidence 889888 6 467899999999999999999998888888855 7888888 7788999999999999998776543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-22 Score=156.11 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=130.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
++++++++|++|+.||.|++||+.+++....+.+|...|.+++| ++.+|++++.||.|++||+.+ +..+..+.. |.
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~-h~ 213 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-GEMLNTLIH-HC 213 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS-CCEEEEECC-CC
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC-CcEEEEEcC-CC
Confidence 45678999999999999999999999999999999999999998 788999999999999999975 577788888 99
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee---eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRII---QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
..+.++ |+ +.++++++.||.|++||+.++... ..+.+|.. .|.++.| ++++|++++.|+.|++||++++..
T Consensus 214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~ 288 (435)
T 1p22_A 214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF 288 (435)
T ss_dssp SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTTCCE
T ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE
Confidence 999999 65 569999999999999999887655 56777755 8999998 778999999999999999988765
Q ss_pred C
Q 028806 158 G 158 (203)
Q Consensus 158 ~ 158 (203)
.
T Consensus 289 ~ 289 (435)
T 1p22_A 289 V 289 (435)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=160.17 Aligned_cols=151 Identities=12% Similarity=0.154 Sum_probs=106.2
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccce----------
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSD---------- 74 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~---------- 74 (203)
++++||+++.|++|+|||+.++..+..+..|...+.+++|+|++ .+|++++.|++|++||+........
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 88999999999999999999888877788889999999999987 5799999999999999975321111
Q ss_pred --------------eeeccCCCceeEE-Ee-eCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEE----------
Q 028806 75 --------------RFVGLSPNSVDAL-LK-LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES---------- 128 (203)
Q Consensus 75 --------------~~~~~~~~~v~~~-~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~---------- 128 (203)
...+ +...+.++ |+ |++..|++++.|+.+++||+.+++....+..+.. .+..
T Consensus 235 ~~~s~~~~~~~~~~~~~~-~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSG-IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGI 312 (393)
T ss_dssp CSEEEESGGGC------C-CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEE
T ss_pred eEEecccccceeeeeccc-ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC-ccccEEEccccccc
Confidence 0123 55667788 64 8999999999999999999987766555544422 2222
Q ss_pred --------EEEeC--CCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 129 --------LALSH--DRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 129 --------i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..|+| ++.++++++.|+.|++||+.++...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 23333 3346677889999999999877654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-23 Score=161.36 Aligned_cols=145 Identities=16% Similarity=0.187 Sum_probs=121.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-------EEEee----cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-------VQTRS----EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
++|||+|++||+|+.||+|++|++.++. .+.++ .+|...|.+++|+|++ +++++.|+.+++|++...
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC
Confidence 5799999999999999999999999874 35665 6677899999999999 788888999999999753
Q ss_pred cc--cceeee-ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEE--eCCCCeEEEEeC
Q 028806 70 KD--CSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL--SHDRKFLGSISH 143 (203)
Q Consensus 70 ~~--~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~ 143 (203)
.. ..+.+. . |...|.++ |+ +..|++++ ++.|++||+.+++......+|.. .|..++| +|++..|++++.
T Consensus 213 ~~~~~~~tL~~~-h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 213 SHQPVSRMIQNA-SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp SSCCCEEEEECC-CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTCSSCEEEEECSS
T ss_pred ccccceeeeccc-ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeCCCCCEEEEEcC
Confidence 31 224463 5 77889999 88 68899887 58999999998777433436755 8999999 999999999999
Q ss_pred CCcEEEEeCC
Q 028806 144 DSMLKLWDLD 153 (203)
Q Consensus 144 d~~i~iwd~~ 153 (203)
+|+ ++|...
T Consensus 288 dG~-klw~~d 296 (588)
T 2j04_A 288 TSY-KVLLED 296 (588)
T ss_dssp CEE-EEEESS
T ss_pred CCC-EEEeec
Confidence 999 999986
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=153.55 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=118.3
Q ss_pred CEEEE--EcCCCeEEEEEcCCCe---------------E-EEeecCCccceEEEEEeeCCCEEEEecCCCe-EEEEEcCC
Q 028806 8 MKLLG--TSGDGTLSVCNLRKNT---------------V-QTRSEFSEEELTSVVLMKNGRKVVCGSQSGT-VLLYSWGY 68 (203)
Q Consensus 8 ~~l~~--~~~d~~i~vw~~~~~~---------------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~~~ 68 (203)
.++++ |+.+|.|++||+.++. + +..+.+|...|.+++|+|++++|++++.|++ |++||+.+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 45555 5889999999998764 1 5778899999999999999999999999998 99999985
Q ss_pred ccccceeee-ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee--eee--------------------ccCCCC
Q 028806 69 FKDCSDRFV-GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII--QPI--------------------AEHSEY 124 (203)
Q Consensus 69 ~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~--------------------~~~~~~ 124 (203)
+.++..+. +.|...|.++ |+|++++|++++.|+.|++||++.+... ..+ ......
T Consensus 228 -~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
T 3vu4_A 228 -GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHV 306 (355)
T ss_dssp -CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTC
T ss_pred -CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCC
Confidence 56777776 2267889999 9999999999999999999999764311 111 111011
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
+...++|++++++|++++.||.+++|++.....
T Consensus 307 ~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 307 RGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 346789999999999999999999999875543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=157.65 Aligned_cols=146 Identities=23% Similarity=0.354 Sum_probs=125.1
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
.++++|++|+.||.|++||+.+++.+..+..|...|.++.| ++.++++++.|+.|++||+.+ +.++..+.+ |...+
T Consensus 264 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~-h~~~v 339 (435)
T 1p22_A 264 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC-GACLRVLEG-HEELV 339 (435)
T ss_dssp EETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT-CCEEEEECC-CSSCE
T ss_pred eCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC-CCEEEEEeC-CcCcE
Confidence 47889999999999999999999999999999999999998 468999999999999999985 577888888 99999
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCc---------eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGILPNR---------IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.++ | ++.+|++|+.||.|++||+.++. .+..+..|.. .|.+++| ++.+|++++.||.|++||+.+
T Consensus 340 ~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 340 RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC-CeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 998 6 78999999999999999998765 7888888865 8999999 788999999999999999987
Q ss_pred cccCC
Q 028806 155 ILKGS 159 (203)
Q Consensus 155 ~~~~~ 159 (203)
.....
T Consensus 415 ~~~~~ 419 (435)
T 1p22_A 415 DPAAQ 419 (435)
T ss_dssp -----
T ss_pred CCCcc
Confidence 65443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=151.38 Aligned_cols=144 Identities=19% Similarity=0.270 Sum_probs=129.4
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCcee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 85 (203)
++++|++++.||+|++|++.+++.+..+.+|...|.++.|+ +..+++++.|+.|++||+.. +..+..+.. |...+.
T Consensus 168 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~-~~~~v~ 243 (445)
T 2ovr_B 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-GQCLHVLMG-HVAAVR 243 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-CCEEEEEEC-CSSCEE
T ss_pred cCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC-CcEEEEEcC-CcccEE
Confidence 36789999999999999999999999999999999999985 57899999999999999975 567778888 899999
Q ss_pred EE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 86 AL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 86 ~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
++ + ++.++++++.++.|++||+++++.+..+..|.. .|.++.| ++.+|++++.|+.|++||++++...
T Consensus 244 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 244 CVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp EEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE
Confidence 88 6 788999999999999999999999999998865 8999998 8889999999999999999887654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-21 Score=145.09 Aligned_cols=141 Identities=8% Similarity=-0.025 Sum_probs=108.1
Q ss_pred CCCeEEEEEcC-CCeEEEeecCCccceEEEEEee---CCCEEEEecCCCeEEEEEcCCccccceeeeccCCC---ceeEE
Q 028806 15 GDGTLSVCNLR-KNTVQTRSEFSEEELTSVVLMK---NGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN---SVDAL 87 (203)
Q Consensus 15 ~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~v~~~ 87 (203)
.|+.|++|++. +++.+..+..|...+..++|+| ++..|++++.|++|++||+.+ ++++.++.+ +.. .+.++
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-Gk~l~tL~g-~~~~v~~v~~v 232 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-GQLLKKMHI-DDSYQASVCHK 232 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-CCEEEEEEC-CC---CCCEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC-CcEEEEEcC-CCcceeeeEEE
Confidence 38888899884 4777777778888888888988 679999999999999999985 677888875 432 46666
Q ss_pred -EeeCCCEE------------EEEcCCCcEEEEEccCCceeeee-----ccCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 88 -LKLDEDRV------------ITGSENGLISLVGILPNRIIQPI-----AEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 88 -~~~~~~~l------------~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
|+|+|.++ ++|+.|++|++||+.+++.+..+ .+|.. .+.+.. .++.++++++.|++|+|
T Consensus 233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~--~sg~~lASgS~DgTIkI 309 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGD--VKDHCAAAILTSGTIAI 309 (356)
T ss_dssp EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEE--EETTEEEEEETTSCEEE
T ss_pred EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEccc--cCCCEEEEEcCCCcEEE
Confidence 89999887 45778899999999999887655 24533 343333 34889999999999999
Q ss_pred EeCCCcccCCC
Q 028806 150 WDLDDILKGSG 160 (203)
Q Consensus 150 wd~~~~~~~~~ 160 (203)
||+.+++..+.
T Consensus 310 WDl~tGk~l~t 320 (356)
T 2w18_A 310 WDLLLGQCTAL 320 (356)
T ss_dssp EETTTCSEEEE
T ss_pred EECCCCcEEEE
Confidence 99999876544
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-22 Score=154.92 Aligned_cols=153 Identities=9% Similarity=-0.012 Sum_probs=122.6
Q ss_pred CcccccCCEEE----EEcCCCeEEEEEcCCC--------e---EEEeecCCccceEEEEEeeC-CCEEEEecCCCeEEEE
Q 028806 1 MTFAADAMKLL----GTSGDGTLSVCNLRKN--------T---VQTRSEFSEEELTSVVLMKN-GRKVVCGSQSGTVLLY 64 (203)
Q Consensus 1 l~~sp~~~~l~----~~~~d~~i~vw~~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~w 64 (203)
|+|+|++++|+ +++.|+.|+|||+.++ + ....+.+|...|.+++|+|+ +.+|++++.|++|++|
T Consensus 98 l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw 177 (434)
T 2oit_A 98 LALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL 177 (434)
T ss_dssp EEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence 47999999999 7888999999998653 1 24566778999999999997 7899999999999999
Q ss_pred EcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC------CceEEEEEeCCCCe
Q 028806 65 SWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE------YPIESLALSHDRKF 137 (203)
Q Consensus 65 d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~~i~~i~~~~~~~~ 137 (203)
|++.. ........ |...+.++ |+|+|++|++|+.||.|++||++ ++....+..+.. ..|.++.|++++.+
T Consensus 178 D~~~~-~~~~~~~~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 178 QVTET-VKVCATLP-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp EESSS-EEEEEEEC-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred EcCCC-cceeeccC-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence 99854 44444556 77889999 99999999999999999999998 555555544321 26899999999887
Q ss_pred EEEEe-CCC------cEEEEeCCCcc
Q 028806 138 LGSIS-HDS------MLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~-~d~------~i~iwd~~~~~ 156 (203)
+++.+ .+| .+++|++++..
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred EEEEccCCCccCCCCceEEEEeccCC
Confidence 76543 443 38999998653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=157.61 Aligned_cols=150 Identities=9% Similarity=0.083 Sum_probs=120.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-----------CeEEEe----ecCCccceEEEEEeeCCCEEE----EecCCCeE
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-----------NTVQTR----SEFSEEELTSVVLMKNGRKVV----CGSQSGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-----------~~~~~~----~~~~~~~v~~~~~~~~~~~l~----~~~~d~~i 61 (203)
|++++++.++++++.++ +++|+... ...... ...+...|.+++|+|++++|+ +++.|+.|
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v 120 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII 120 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceE
Confidence 46889999999998887 88887531 011110 012456799999999999999 78889999
Q ss_pred EEEEcCCc-----c--cc---ceeeeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEE
Q 028806 62 LLYSWGYF-----K--DC---SDRFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESL 129 (203)
Q Consensus 62 ~~wd~~~~-----~--~~---~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i 129 (203)
++||+... . .. +..+.+ |...|.++ |+|+ +.+|++++.||.|++||++++..+.....|.. .|.++
T Consensus 121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~-~v~~v 198 (434)
T 2oit_A 121 AFFDVRTFSNEAKQQKRPFAYHKLLKD-AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV-AVTSV 198 (434)
T ss_dssp EEEEHHHHHCTTCSSCCCSEEEECCCS-GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG-CEEEE
T ss_pred EEEEccccccCCcCCcceeeeeeccCC-CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC-ceeEE
Confidence 99998642 1 11 344566 78899999 9998 88999999999999999998876666666644 79999
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 130 ALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+|+|+|++|++++.|+.|++||++
T Consensus 199 ~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 199 CWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EECTTSSCEEEEETTSCEEEECTT
T ss_pred EEcCCCCEEEEEcCCCcEEEEccC
Confidence 999999999999999999999998
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-21 Score=149.37 Aligned_cols=153 Identities=13% Similarity=0.046 Sum_probs=131.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE-----eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-----RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++|+|++.++++++.++.|++||+.+++... .+..|...|.+++|+|++.++++++.++.|++||+.. +..+..
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-~~~~~~ 206 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-LAYKAT 206 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-CCEEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-ceEEEE
Confidence 5789977788888889999999999988776 3456788999999999999999999999999999974 466677
Q ss_pred eeccCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe--------CCC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS--------HDS 145 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--------~d~ 145 (203)
+.. +...+.++ |+|++++++++ +.++.|++||+++++.+..+..+ . .+.+++|+|++++|++++ .|+
T Consensus 207 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg 283 (433)
T 3bws_A 207 VDL-TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-G-LPRGLLLSKDGKELYIAQFSASNQESGGG 283 (433)
T ss_dssp EEC-SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-S-EEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred EcC-CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-C-CceEEEEcCCCCEEEEEECCCCccccCCC
Confidence 777 78889999 99999988654 47899999999999888888765 3 689999999999999888 488
Q ss_pred cEEEEeCCCccc
Q 028806 146 MLKLWDLDDILK 157 (203)
Q Consensus 146 ~i~iwd~~~~~~ 157 (203)
.|++||+.++..
T Consensus 284 ~i~~~d~~~~~~ 295 (433)
T 3bws_A 284 RLGIYSMDKEKL 295 (433)
T ss_dssp EEEEEETTTTEE
T ss_pred eEEEEECCCCcE
Confidence 999999987654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=144.89 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=125.6
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|++++| ++++.++.|++||+.+++.+..+..+. .+.+++|+|++++|++ +..++.|++||+.. +..+..+..
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~ 114 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAGTVKT 114 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC-CeEEEEEeC
Confidence 4799999977 677789999999999999888887655 8999999999998754 55679999999974 455555554
Q ss_pred cCCCceeEE-EeeCCCEE-EEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE-EEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~ 155 (203)
...+.++ |+|+++++ ++++.++.|++||+.+++.+..+..+ . .+.+++|+|++++| ++++.++.|++||++++
T Consensus 115 --~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 115 --GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp --SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred --CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C-CcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 4467778 99999987 67778999999999999988888776 3 57999999999987 56678899999999887
Q ss_pred ccC
Q 028806 156 LKG 158 (203)
Q Consensus 156 ~~~ 158 (203)
...
T Consensus 191 ~~~ 193 (391)
T 1l0q_A 191 SVI 193 (391)
T ss_dssp EEE
T ss_pred eEE
Confidence 644
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-20 Score=142.58 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=126.4
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|++++| ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.| ++++.++.|++||+.. +.....+.
T Consensus 121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~- 197 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK- 197 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe-
Confidence 4789999977 67888999999999999888877765 457999999999887 5677899999999975 44555554
Q ss_pred cCCCceeEE-EeeCCCEEEEEc---CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE-EEEeCCCcEEEEeCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGS---ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~iwd~~ 153 (203)
+...+.++ |+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus 198 -~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred -cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC--CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 45567778 999999999888 68999999999999888888763 57899999999987 566789999999998
Q ss_pred CcccC
Q 028806 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 275 ~~~~~ 279 (391)
T 1l0q_A 275 TNTIT 279 (391)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 76543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-19 Score=140.26 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=119.9
Q ss_pred CcccccCCEEEEEcCCC---eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCC--eEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTSGDG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~~wd~~~~~~~~~ 74 (203)
++|||+|++|++++.++ .|++||+.+++.. .+..+...+.+++|+|+++.|+ +++.++ .|++||+.+ +. ..
T Consensus 184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~-~~ 260 (415)
T 2hqs_A 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IR 260 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CC-EE
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CC-EE
Confidence 47999999999998875 9999999988765 4566778899999999999887 565554 499999874 33 35
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcC-CC--cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC---CcE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NG--LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD---SML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i 147 (203)
.+.. +...+.++ |+|+|++|++++. ++ .|++||+.+++.. .+..+.. .+.+++|+|+|++|++++.+ ..|
T Consensus 261 ~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i 337 (415)
T 2hqs_A 261 QVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHI 337 (415)
T ss_dssp ECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred eCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEE
Confidence 6666 77788888 9999999998876 44 6777898877643 3444433 68899999999999988754 589
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++||+.++...
T Consensus 338 ~~~d~~~~~~~ 348 (415)
T 2hqs_A 338 AKQDLATGGVQ 348 (415)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCCEE
Confidence 99999887653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=140.62 Aligned_cols=153 Identities=10% Similarity=0.054 Sum_probs=126.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++|+|+++++++++.++.|++|++.+++.+..+..|...+.+++|+|++..++ +++.++.|++||+.. +..+..+..
T Consensus 175 ~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~- 252 (433)
T 3bws_A 175 ISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLEIRKTDK- 252 (433)
T ss_dssp EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEEEEECCC-
T ss_pred EEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcEEEEecC-
Confidence 46889999999999999999999999988888888888999999999999885 455799999999974 455555554
Q ss_pred CCCceeEE-EeeCCCEEEEEc--------CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE-EEEeCCCcEEE
Q 028806 80 SPNSVDAL-LKLDEDRVITGS--------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKL 149 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~i 149 (203)
...+.++ |+|+++++++++ .++.|++||+.+++.+..+... . .+.+++|+|+++++ ++++.++.|++
T Consensus 253 -~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 253 -IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-G-NKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp -CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-E-CEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred -CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-C-CcceEEECCCCCEEEEEecCCCEEEE
Confidence 3457777 899999999888 4889999999998877666332 3 68899999999765 55678999999
Q ss_pred EeCCCcccC
Q 028806 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
||+.++...
T Consensus 330 ~d~~~~~~~ 338 (433)
T 3bws_A 330 YDLKEKKVQ 338 (433)
T ss_dssp EETTTTEEE
T ss_pred EECCCCcEE
Confidence 999876543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=142.24 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=94.9
Q ss_pred CcccccCCEEEEEcCCC----eEEEEEcCCCeE----EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028806 1 MTFAADAMKLLGTSGDG----TLSVCNLRKNTV----QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~----~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
++|+|+++++++++.++ .+++|++..... ...+..|...|++++|+|++++|++|+.|++|++||+.+ +.+
T Consensus 225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~ 303 (365)
T 4h5i_A 225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSM 303 (365)
T ss_dssp EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEE
T ss_pred EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcE
Confidence 47999999999998776 688999876543 345678889999999999999999999999999999985 456
Q ss_pred cee-eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC
Q 028806 73 SDR-FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILP 111 (203)
Q Consensus 73 ~~~-~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~ 111 (203)
+.. +.+ |...|+++ |+|+|++|++++.|++|+||++..
T Consensus 304 ~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 304 SKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 655 467 99999999 999999999999999999999864
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=135.40 Aligned_cols=149 Identities=16% Similarity=0.146 Sum_probs=116.8
Q ss_pred CcccccCCEEE-EEcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCccccce
Q 028806 1 MTFAADAMKLL-GTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~ 74 (203)
++|+|+|++|+ +++.++ .|++||+.+++. ..+..|...+.+++|+|++++|++++. ++ .|++||+.. + ...
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~-~~~ 304 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-G-APQ 304 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-S-CCE
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-C-CEE
Confidence 47999999887 555555 499999998876 567778888999999999998888775 44 677778764 2 234
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC---cE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS---ML 147 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i 147 (203)
.+.. +...+..+ |+|+|++|++++.+ ..|++||+.+++.. .+..+ . .+.+++|+|+|++|++++.++ .|
T Consensus 305 ~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~-~-~~~~~~~spdg~~l~~~s~~~~~~~l 380 (415)
T 2hqs_A 305 RITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST-F-LDETPSLAPNGTMVIYSSSQGMGSVL 380 (415)
T ss_dssp ECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS-S-SCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred EEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC-C-CcCCeEEcCCCCEEEEEEcCCCccEE
Confidence 4555 56677778 99999999988764 57999999988764 45555 3 689999999999999888776 79
Q ss_pred EEEeCCCcc
Q 028806 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
++||+.+..
T Consensus 381 ~~~d~~g~~ 389 (415)
T 2hqs_A 381 NLVSTDGRF 389 (415)
T ss_dssp EEEETTSCC
T ss_pred EEEECCCCc
Confidence 999987554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=144.24 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=111.2
Q ss_pred CcccccCCEEEEEcC-CC-----eEEEEEcCCCeEEEeecCCc------------------------cceEEEEEeeCCC
Q 028806 1 MTFAADAMKLLGTSG-DG-----TLSVCNLRKNTVQTRSEFSE------------------------EELTSVVLMKNGR 50 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~-----~i~vw~~~~~~~~~~~~~~~------------------------~~v~~~~~~~~~~ 50 (203)
++|||||++|++++. ++ .|++|++.+++....+..+. ..+.+++|+|||+
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~ 121 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ 121 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence 479999999999988 88 89999999987766655432 2378899999999
Q ss_pred EEEEecCCCeEEEEEcCCccc--cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC---
Q 028806 51 KVVCGSQSGTVLLYSWGYFKD--CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY--- 124 (203)
Q Consensus 51 ~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--- 124 (203)
+|++++. +.|++||+.. +. ....+.. +...+..+ |+|+|++|++++. +.|++||+.+++.......+...
T Consensus 122 ~l~~~~~-~~i~~~d~~~-~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~ 197 (741)
T 2ecf_A 122 RLLFPLG-GELYLYDLKQ-EGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGN 197 (741)
T ss_dssp EEEEEET-TEEEEEESSS-CSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEE
T ss_pred EEEEEeC-CcEEEEECCC-CCcceEEEccc-CCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceec
Confidence 9998886 8999999974 31 4455666 67778888 9999999998874 58999999988776554443220
Q ss_pred ------------ceEEEEEeCCCCeEEEEeCCC
Q 028806 125 ------------PIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 125 ------------~i~~i~~~~~~~~l~~~~~d~ 145 (203)
.+..++|+|||++|++++.|+
T Consensus 198 g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 198 GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred cccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence 147799999999999987665
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.2e-19 Score=144.85 Aligned_cols=140 Identities=14% Similarity=0.033 Sum_probs=107.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc---ceEEEEEeeCCCEEEEecCC---------CeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGSQS---------GTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~ 68 (203)
++|+|+|+++++ +.||+|++|++.+++....+..+.. .|.+++|+|||++|++++.+ +.+++||+..
T Consensus 22 ~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 100 (723)
T 1xfd_A 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (723)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred cEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC
Confidence 579999997766 7889999999999887777766654 48999999999999988764 7889999975
Q ss_pred ccccceeeec--cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC-----------------ceEE
Q 028806 69 FKDCSDRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-----------------PIES 128 (203)
Q Consensus 69 ~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------------~i~~ 128 (203)
. .. ..+.. .+...+..+ |+|+|+.|++++. +.|++|++.+++.......+... .+.+
T Consensus 101 ~-~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 101 G-DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp C-CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred C-ce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence 3 33 33332 033347777 9999999999886 78999999988777655543221 1278
Q ss_pred EEEeCCCCeEEEEeCC
Q 028806 129 LALSHDRKFLGSISHD 144 (203)
Q Consensus 129 i~~~~~~~~l~~~~~d 144 (203)
++|+|||++|++++.+
T Consensus 178 ~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAIN 193 (723)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred EEECCCCCEEEEEEEC
Confidence 9999999999988754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-18 Score=123.51 Aligned_cols=153 Identities=13% Similarity=0.046 Sum_probs=114.7
Q ss_pred CcccccCCEEEEEcC--CC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLLGTSG--DG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++|+|++++|++++. ++ .|.+|++.++.. ..+..+ ..+..++|+|+++.|+ ++..++.+.+|++.........
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence 579999999999883 33 455555555543 344433 3488999999999877 6778899999997543344455
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEcc-CCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC--------
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGIL-PNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-------- 144 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-------- 144 (203)
+.. +...+.++ |+|++++|++++ .++.+.+|++. .+.....+..+.. .+.++.|+|++++|++++.+
T Consensus 168 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 168 LTH-GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY-GDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp CCC-SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE-EEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred ccc-CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc-ccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 666 67788888 999999888766 48889999986 4556666766643 78899999999999888765
Q ss_pred ---CcEEEEeCCCccc
Q 028806 145 ---SMLKLWDLDDILK 157 (203)
Q Consensus 145 ---~~i~iwd~~~~~~ 157 (203)
+.|++||+.++..
T Consensus 246 ~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNV 261 (297)
T ss_dssp SEEEEEEEEETTSCSC
T ss_pred cCceEEEEEecCCCCc
Confidence 5699999987654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-17 Score=131.01 Aligned_cols=151 Identities=8% Similarity=0.055 Sum_probs=124.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEc--CCccccceeeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW--GYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~~~ 79 (203)
+|+|++.++++++.+++|.+||..+++++..+..+.. +..++|+|++++|++++.++.|.+||+ .+ ...+..+..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~~- 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIKI- 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEEEC-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEEec-
Confidence 4788999999999999999999999999888874333 889999999999999999999999999 54 455666654
Q ss_pred CCCceeEE-Eee----CCCEEEEEcC-CCcEEEEEccCCceeeeeccC----------CCCceEEEEEeCCCCe-EEEEe
Q 028806 80 SPNSVDAL-LKL----DEDRVITGSE-NGLISLVGILPNRIIQPIAEH----------SEYPIESLALSHDRKF-LGSIS 142 (203)
Q Consensus 80 ~~~~v~~~-~~~----~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~----------~~~~i~~i~~~~~~~~-l~~~~ 142 (203)
...+..+ |+| +|+++++++. ++.|.+||..+++++..+..+ ....+.++.++|++.. +++..
T Consensus 221 -g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 221 -GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred -CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 4456777 999 9999999885 899999999999988877642 2336889999998765 45666
Q ss_pred CCCcEEEEeCCCcc
Q 028806 143 HDSMLKLWDLDDIL 156 (203)
Q Consensus 143 ~d~~i~iwd~~~~~ 156 (203)
.++.|.+||+.+..
T Consensus 300 ~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 300 ETGKVLLVNYKDID 313 (543)
T ss_dssp TTTEEEEEECTTSS
T ss_pred CCCeEEEEEecCCC
Confidence 88999999998743
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.9e-17 Score=121.06 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=121.4
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCcc---------ceEEEEEeeCCCEEEEec--CCCeEEEEEcCC
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEE---------ELTSVVLMKNGRKVVCGS--QSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~ 68 (203)
++|+|+++++ ++...++.|.+||..+++.+..+..+.. .+.+++|+|+++++++++ .++.|.+||+.+
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 4689999965 4556679999999999988777765432 278899999999887766 478999999974
Q ss_pred ccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC---CCceEEEEEeCCCCeEEEEeC-
Q 028806 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS---EYPIESLALSHDRKFLGSISH- 143 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~- 143 (203)
+.....+.. +...+..+ |+|+++++++++.++.|.+||+.+++.+..+.... ...+..++|+|++++|++++.
T Consensus 174 -~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 174 -IKLKTAIQN-TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp -TEEEEEECC-CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred -CceEEEecC-CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 455555553 34446677 89999999999999999999999998887765411 225778999999998877664
Q ss_pred CCcEEEEeCCCcccC
Q 028806 144 DSMLKLWDLDDILKG 158 (203)
Q Consensus 144 d~~i~iwd~~~~~~~ 158 (203)
++.|.+||+.++...
T Consensus 252 ~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 252 AAEVLVVDTRNGNIL 266 (353)
T ss_dssp SSEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCcEE
Confidence 589999999877643
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=121.16 Aligned_cols=149 Identities=11% Similarity=0.071 Sum_probs=111.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-CeEEEeecCC-ccceEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRSEFS-EEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~ 76 (203)
++|+|++++|++++ ++.|++|++.+ ++.......+ ...+.+++|+|++++|++++ .++...+|.+.........+
T Consensus 47 ~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (297)
T 2ojh_A 47 PNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM 125 (297)
T ss_dssp EEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC
T ss_pred eEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe
Confidence 47999999999986 68999999998 8776666555 36788999999999999988 33456666554323334444
Q ss_pred eccCCCceeEE-EeeCCCEEE-EEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~-~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
.. + ..+..+ |+|++++|+ ++..++.+.+|++.. +.....+..+.. .+.+++|+|++++|++++ .++.+.+|++
T Consensus 126 ~~-~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~i~~~ 202 (297)
T 2ojh_A 126 TK-N-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG-RNDGPDYSPDGRWIYFNSSRTGQMQIWRV 202 (297)
T ss_dssp CS-S-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS-CEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ec-C-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC-ccccceECCCCCEEEEEecCCCCccEEEE
Confidence 43 3 347777 999999887 677889899998643 233344555534 799999999999888766 5889999987
Q ss_pred C
Q 028806 153 D 153 (203)
Q Consensus 153 ~ 153 (203)
.
T Consensus 203 ~ 203 (297)
T 2ojh_A 203 R 203 (297)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-17 Score=122.39 Aligned_cols=150 Identities=10% Similarity=0.012 Sum_probs=116.0
Q ss_pred CcccccCCEEEEEc------------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTS------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~------------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 68 (203)
++|+|+|++|+++. .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|++||+..
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence 46899999988885 579999999999888777664 4457889999999988887 57899999864
Q ss_pred ccccceeeec-----------------------------------------------------------------cCCCc
Q 028806 69 FKDCSDRFVG-----------------------------------------------------------------LSPNS 83 (203)
Q Consensus 69 ~~~~~~~~~~-----------------------------------------------------------------~~~~~ 83 (203)
. .....+.. .+...
T Consensus 164 ~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 164 G-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp T-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred C-cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 2 22211110 01112
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+..+ |+|++++++++ ++.|.+||+.+++.+..+..+ . .+.+++|+|++++|++++.++.|.+||+.++...
T Consensus 243 ~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-H-SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred eeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-C-ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 3346 89999999888 689999999999888777655 3 5789999999999999889999999999887654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.8e-17 Score=121.08 Aligned_cols=154 Identities=9% Similarity=0.046 Sum_probs=121.4
Q ss_pred CcccccCCEEEEEc--CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|++++++++. .++.|.+||..+++.+..+..+...+.+++|+|+++++++++.++.+.+||+.+ +.....+..
T Consensus 146 ~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~ 224 (353)
T 3vgz_A 146 LVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKL 224 (353)
T ss_dssp EEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEc
Confidence 46899999877765 478999999999998888875566688899999999999999999999999975 344444332
Q ss_pred ---cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 79 ---LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 79 ---~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
.+...+..+ |+|+++++++++. ++.|.+||+.+++.+..+.... + ..++|+|+++++++++ .++.|.+||+
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~-~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--S-LAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--C-CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--C-ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 023345667 8999998877765 4899999999999888777652 2 5689999999776666 6899999999
Q ss_pred CCcccC
Q 028806 153 DDILKG 158 (203)
Q Consensus 153 ~~~~~~ 158 (203)
.++...
T Consensus 302 ~~~~~~ 307 (353)
T 3vgz_A 302 KSYKVV 307 (353)
T ss_dssp TTTEEE
T ss_pred CCCeEE
Confidence 887654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-17 Score=129.97 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=119.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEc--CCCeEEEeecCCccceEEEEEee----CCCEEEEecC-CCeEEEEEcCCccccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNL--RKNTVQTRSEFSEEELTSVVLMK----NGRKVVCGSQ-SGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~~wd~~~~~~~~ 73 (203)
++|+|+|++|++++.+++|.+||+ .+++.+..+.. ...+..++|+| ++++|++++. +++|.+||..+ .+++
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~ 261 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPK 261 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEE
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccc
Confidence 469999999999999999999999 88888888874 45689999999 9999999885 89999999875 4555
Q ss_pred eeeeccC-----------CCceeEE-EeeCCCEE-EEEcCCCcEEEEEccCCceee--eeccCCCCceEEEEEeCCCCeE
Q 028806 74 DRFVGLS-----------PNSVDAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 74 ~~~~~~~-----------~~~v~~~-~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l 138 (203)
..+.. + ...+..+ ++|++..+ ++...++.|.+||+.+.+.+. .+. +.. .+..+.|+|++++|
T Consensus 262 ~~i~~-~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~-~~~~~~~spdg~~l 338 (543)
T 1nir_A 262 QIVST-RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP-FLHDGGWDSSHRYF 338 (543)
T ss_dssp EEEEC-CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS-SCCCEEECTTSCEE
T ss_pred eeecc-cCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCc-CccCceECCCCCEE
Confidence 55543 2 2256777 88876654 556678999999998765443 333 223 57889999999987
Q ss_pred EEEe-CCCcEEEEeCCCcccC
Q 028806 139 GSIS-HDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~-~d~~i~iwd~~~~~~~ 158 (203)
++++ .++.|.+||+.++...
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~ 359 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLS 359 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEE
T ss_pred EEEecCCCeEEEEECCCCeEE
Confidence 7665 6889999999887643
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-17 Score=120.44 Aligned_cols=151 Identities=14% Similarity=0.200 Sum_probs=110.8
Q ss_pred CcccccCCEEEEEcCC-CeEEEEEcC--CCe--EEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCC--cccc
Q 028806 1 MTFAADAMKLLGTSGD-GTLSVCNLR--KNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGY--FKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d-~~i~vw~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~--~~~~ 72 (203)
++|+|++++|++++.+ +.|.+|++. ++. .+..+..+. .+..++|+|++++|++++. ++.|.+||+.. ....
T Consensus 43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 121 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 121 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence 4799999988888776 999999997 554 334444433 7889999999998876654 88999999941 1223
Q ss_pred ceeeeccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccC-Cceee----eeccCCCCceEEEEEeCCCCeEEEEe-CC
Q 028806 73 SDRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILP-NRIIQ----PIAEHSEYPIESLALSHDRKFLGSIS-HD 144 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~----~~~~~~~~~i~~i~~~~~~~~l~~~~-~d 144 (203)
...+.. ...+.++ |+|+++++++++ .++.|.+|++.+ ++... .+..+....+..++|+|++++|++++ .+
T Consensus 122 ~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~ 199 (343)
T 1ri6_A 122 VDVVEG--LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN 199 (343)
T ss_dssp EEEECC--CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cccccC--CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC
Confidence 333333 3456777 999999888877 789999999987 65432 22333233688999999999876655 78
Q ss_pred CcEEEEeCCC
Q 028806 145 SMLKLWDLDD 154 (203)
Q Consensus 145 ~~i~iwd~~~ 154 (203)
+.|.+|++..
T Consensus 200 ~~i~~~~~~~ 209 (343)
T 1ri6_A 200 SSVDVWELKD 209 (343)
T ss_dssp TEEEEEESSC
T ss_pred CEEEEEEecC
Confidence 9999999954
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=119.30 Aligned_cols=153 Identities=8% Similarity=0.063 Sum_probs=114.6
Q ss_pred CcccccCCEEEEEcCCC---eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCCe-EEEEEcCCccccc--
Q 028806 1 MTFAADAMKLLGTSGDG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGT-VLLYSWGYFKDCS-- 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~~wd~~~~~~~~-- 73 (203)
++|+|++++|+++..++ .|.+|++.+++.+..+..+ ..+.+++|+|++++++++ ..++. +.+|++...+...
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 46899999998655553 8999999999888777653 456899999999866554 45577 9999987433221
Q ss_pred -eeeeccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCce---eeeeccCCCCceEEEEEeCCCCeEEEEe-CCCc
Q 028806 74 -DRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRI---IQPIAEHSEYPIESLALSHDRKFLGSIS-HDSM 146 (203)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~ 146 (203)
..... ....+..+ |+|+|+++++++ .++.|.+||+.+++. +..+..+ . .+..++|+|+|++|++++ .++.
T Consensus 168 ~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 168 GQEFIS-GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-N-LPGTIVVSRDGSTVYVLTESTVD 244 (331)
T ss_dssp EEEEEC-SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-S-CCCCEEECTTSSEEEEECSSEEE
T ss_pred CCcccc-CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-C-CCceEEECCCCCEEEEEEcCCCE
Confidence 11112 33456777 999999766554 588999999999887 7777655 3 578899999999877665 5778
Q ss_pred EEEEeCCCccc
Q 028806 147 LKLWDLDDILK 157 (203)
Q Consensus 147 i~iwd~~~~~~ 157 (203)
|.+||+.++..
T Consensus 245 i~~~d~~~~~~ 255 (331)
T 3u4y_A 245 VFNFNQLSGTL 255 (331)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCce
Confidence 99999988765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-16 Score=117.17 Aligned_cols=148 Identities=12% Similarity=0.088 Sum_probs=114.0
Q ss_pred cccccCCE-EEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc-ceeeec
Q 028806 2 TFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC-SDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~-l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~-~~~~~~ 78 (203)
.|.+++++ +++...++.|.+||+.+++.+..+..+...+ .++|+|+++++++++. ++.|.+||+... .. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE-PPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS-SCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC-ceeEEeccc
Confidence 35666665 6777888999999999998887777666667 9999999997766655 889999999753 44 556665
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCc-EEEEeC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSM-LKLWDL 152 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~-i~iwd~ 152 (203)
+..+..++ |+|++++++++..++ .|.+||+.+++.+..+..+ . ...+++|+|+|++|++++ .++. |.+|++
T Consensus 82 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 82 -GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-Y-DAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp -CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-T-TEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred -CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-C-CccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 66666646 999999999655553 8999999999888877665 3 578999999998766554 5578 999998
Q ss_pred CC
Q 028806 153 DD 154 (203)
Q Consensus 153 ~~ 154 (203)
..
T Consensus 159 ~~ 160 (331)
T 3u4y_A 159 DA 160 (331)
T ss_dssp CT
T ss_pred CC
Confidence 64
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=136.18 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=113.0
Q ss_pred CcccccCCEEEEEcCC---------CeEEEEEcCCCeEEEeec---CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGD---------GTLSVCNLRKNTVQTRSE---FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 68 (203)
++|||||++|++++.+ +.|++||+.+++. ..+. .+...+..++|+|||+.|++++. +.|++|++..
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~ 143 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG 143 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC
Confidence 3699999999998764 7899999998765 3333 34445888999999999998876 7899999874
Q ss_pred ccccceeeeccCCCce------------------eEE-EeeCCCEEEEEcCCC---------------------------
Q 028806 69 FKDCSDRFVGLSPNSV------------------DAL-LKLDEDRVITGSENG--------------------------- 102 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v------------------~~~-~~~~~~~l~~~~~d~--------------------------- 102 (203)
+........ +...+ ..+ |+|+|++|++++.++
T Consensus 144 -g~~~~~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (723)
T 1xfd_A 144 -KQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (723)
T ss_dssp -SCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred -CceEEEecC-CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence 344333332 22222 567 999999999887542
Q ss_pred -------cEEEEEccCCceeeeeccCC-----CCceEEEEEeCCCCeEEEEeC----CCcEEEEeCCCccc
Q 028806 103 -------LISLVGILPNRIIQPIAEHS-----EYPIESLALSHDRKFLGSISH----DSMLKLWDLDDILK 157 (203)
Q Consensus 103 -------~i~~~d~~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~----d~~i~iwd~~~~~~ 157 (203)
.|++||+.+++....+..+. ...+..++|+|||++|++... +..|++||+.++..
T Consensus 222 G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred CCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 79999998887655555431 236889999999998876653 35799999987653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-17 Score=134.51 Aligned_cols=151 Identities=12% Similarity=0.069 Sum_probs=115.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|||||++|++++. +.|++|++.++. ....+..+...+..++|+|||++|++++ ++.|++||+.. +........
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~-g~~~~~~~~ 190 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS-GRQMQLTAD 190 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT-TEEEECCCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC-CCEEEeccC
Confidence 479999999999887 999999999872 3345667778899999999999999887 46899999974 333332222
Q ss_pred cCCCc----------------eeEE-EeeCCCEEEEEcCCC---------------------------------cEEEEE
Q 028806 79 LSPNS----------------VDAL-LKLDEDRVITGSENG---------------------------------LISLVG 108 (203)
Q Consensus 79 ~~~~~----------------v~~~-~~~~~~~l~~~~~d~---------------------------------~i~~~d 108 (203)
+... +..+ |+|+|++|++++.++ .|++||
T Consensus 191 -~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 191 -GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp -CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred -CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 2221 3667 999999999987665 788999
Q ss_pred ccC-Cceeeeecc--CCCCceEEEEEeCCCCeEEEEeC-----CCcEEEEeCCCccc
Q 028806 109 ILP-NRIIQPIAE--HSEYPIESLALSHDRKFLGSISH-----DSMLKLWDLDDILK 157 (203)
Q Consensus 109 ~~~-~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~ 157 (203)
+.+ ++....... + ...+..++| |||++|++++. +..|++||+.++..
T Consensus 270 ~~~~~~~~~~~~~~~~-~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~ 324 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQ-DIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ 324 (741)
T ss_dssp SSTTCCCEEECCCSCS-SEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred CCCCCceEEecCCCCc-ceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce
Confidence 988 776554432 4 337899999 99999987664 56799999988754
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=135.07 Aligned_cols=139 Identities=16% Similarity=0.076 Sum_probs=102.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc---ceEEEEEeeCCCEEEEecC---------CCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~ 68 (203)
++|+|+|+++++ +.+++|++|++.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+..
T Consensus 21 ~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 479999965555 4689999999999887766655433 3889999999999998876 68999999974
Q ss_pred ccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCce-----------------EEEE
Q 028806 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----------------ESLA 130 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i-----------------~~i~ 130 (203)
+..+.... ....+..+ |+|+|+.|+++. ++.|++|++.+++............| .+++
T Consensus 100 -g~~~~~~~--l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 100 -GEFVRGNE--LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp -TEECCSSC--CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred -Ccccccee--cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 33311011 12346667 999999999885 67999999988876543322111112 4799
Q ss_pred EeCCCCeEEEEeCC
Q 028806 131 LSHDRKFLGSISHD 144 (203)
Q Consensus 131 ~~~~~~~l~~~~~d 144 (203)
|+|||++|++++.|
T Consensus 176 wSPDG~~la~~~~d 189 (719)
T 1z68_A 176 WSPNGKFLAYAEFN 189 (719)
T ss_dssp ECTTSSEEEEEEEE
T ss_pred ECCCCCEEEEEEEC
Confidence 99999999988754
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-17 Score=137.87 Aligned_cols=149 Identities=12% Similarity=0.131 Sum_probs=123.7
Q ss_pred Cccc-ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-ceEEEEEeeCCCEEEEecCCCeEE-EEEcCCccccceeee
Q 028806 1 MTFA-ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCGSQSGTVL-LYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~s-p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-~wd~~~~~~~~~~~~ 77 (203)
++|| |+|++|++++ ++.|++|++.++.... +..+.. .+..++|+ +++.|++++.+..+. +|++.. +. ...+.
T Consensus 301 ~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~-~~~l~ 375 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GK-AEKFE 375 (1045)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CC-EEECC
T ss_pred eeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CC-ceEec
Confidence 4689 9999998887 6899999998876543 556666 89999999 999999888888888 889863 23 33444
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC----------c
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS----------M 146 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----------~ 146 (203)
. +...+..+ |+|+|++|++++.++.|++||+.+++....+..|.. .+.+++|+|+|++|++++.++ .
T Consensus 376 ~-~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~-~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~ 453 (1045)
T 1k32_A 376 E-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQA 453 (1045)
T ss_dssp C-CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred C-CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC-CccceEECCCCCeEEEEecCccccccCCCCCe
Confidence 6 77788888 999999999999999999999999988877767744 789999999999999887644 8
Q ss_pred EEEEeCCCcc
Q 028806 147 LKLWDLDDIL 156 (203)
Q Consensus 147 i~iwd~~~~~ 156 (203)
|++||+.++.
T Consensus 454 i~l~d~~~g~ 463 (1045)
T 1k32_A 454 IHVYDMEGRK 463 (1045)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCc
Confidence 9999998765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.7e-16 Score=116.07 Aligned_cols=153 Identities=10% Similarity=0.103 Sum_probs=106.7
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCcccc--
Q 028806 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDC-- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~-- 72 (203)
|+|+|+|+ |++++. ++.|++|++.++. .+..+..+...+..++|+|++++|++++ .++.+.+|++...+..
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL 123 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence 47899999 555443 6899999998765 3344444566788999999999888877 6899999999632221
Q ss_pred ceeeeccC--------CCceeEE-EeeCCCEEEEEcCCCcEEEEEcc-CCceee--eeccCCCCceEEEEEeCCCCeEEE
Q 028806 73 SDRFVGLS--------PNSVDAL-LKLDEDRVITGSENGLISLVGIL-PNRIIQ--PIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 73 ~~~~~~~~--------~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
+..+.... ...+.++ |+|+|+++++...++.|.+|++. +++... .+..+....+..++|+|+|++|++
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v 203 (347)
T 3hfq_A 124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFL 203 (347)
T ss_dssp EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEE
Confidence 22222100 1236667 89999966666678899999998 454332 222222335788999999997766
Q ss_pred E-eCCCcEEEEeCCC
Q 028806 141 I-SHDSMLKLWDLDD 154 (203)
Q Consensus 141 ~-~~d~~i~iwd~~~ 154 (203)
+ ..++.|.+|++..
T Consensus 204 ~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 204 AGELSSQIASLKYDT 218 (347)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EeCCCCEEEEEEecC
Confidence 5 4678999999874
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-16 Score=132.58 Aligned_cols=149 Identities=11% Similarity=0.025 Sum_probs=123.2
Q ss_pred CcccccCCEEEEEcCCCeEE-EEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLS-VCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~-vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++|+ +|+.|++++.++.+. +|++.++.... +..|...+..++|+|++++|++++.++.|++||+.+ +.....+..
T Consensus 343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~- 418 (1045)
T 1k32_A 343 RGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERS- 418 (1045)
T ss_dssp ECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-
T ss_pred eeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccC-
Confidence 3688 999999988888899 99998876544 447778899999999999999999999999999974 455555556
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCC----------cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENG----------LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~----------~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
+...+..+ |+|+|++|++++.++ .|++||+.+++ ...+..|.. .+..++|+|+|++|++++.++...
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~-~~~~~~~spdG~~l~~~s~~~~~~ 496 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENS-HDYAPAFDADSKNLYYLSYRSLDP 496 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSS-BEEEEEECTTSCEEEEEESCCCCC
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCc-ccCCceEcCCCCEEEEEecccCCc
Confidence 78888888 999999999887644 89999999877 556666644 688999999999999999888888
Q ss_pred EEeCCCc
Q 028806 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
+|+....
T Consensus 497 ~~~~~~~ 503 (1045)
T 1k32_A 497 SPDRVVL 503 (1045)
T ss_dssp EECSSSS
T ss_pred Ccchhcc
Confidence 8886543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=129.32 Aligned_cols=149 Identities=11% Similarity=0.045 Sum_probs=111.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc----cccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----KDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~ 76 (203)
++|||+ +.++.+. ++.|++||+.+++.... ..+...+.+++|+|+|+.|+++ .++.|++|++... +......
T Consensus 87 ~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~ 162 (706)
T 2z3z_A 87 TLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT 162 (706)
T ss_dssp EEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC
T ss_pred EEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec
Confidence 468999 6666554 49999999998876543 3456678889999999999985 6799999999741 3333322
Q ss_pred eccCCCc--------------eeEE-EeeCCCEEEEEc---------------------------------CCCcEEEEE
Q 028806 77 VGLSPNS--------------VDAL-LKLDEDRVITGS---------------------------------ENGLISLVG 108 (203)
Q Consensus 77 ~~~~~~~--------------v~~~-~~~~~~~l~~~~---------------------------------~d~~i~~~d 108 (203)
.. +... +.++ |+|+|++|++++ .+..|++||
T Consensus 163 ~~-~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 163 ID-GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp SC-CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred cC-CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 22 2222 3677 999999999987 346799999
Q ss_pred ccCCceeeeec--cCCCCceEEEEEeCCCCeEEEEeCCC-----cEEEEeCCCc
Q 028806 109 ILPNRIIQPIA--EHSEYPIESLALSHDRKFLGSISHDS-----MLKLWDLDDI 155 (203)
Q Consensus 109 ~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~~ 155 (203)
+.+++...... .+ ...+.+++|+|+|++|++++.++ .|++||+.++
T Consensus 242 ~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 242 LATGKTVYLQTGEPK-EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp TTTTEEEECCCCSCT-TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred CCCCceEeeccCCCC-ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 99887654443 23 23689999999999999887765 8999999887
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-15 Score=114.60 Aligned_cols=150 Identities=10% Similarity=0.161 Sum_probs=104.3
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCe-------E------EEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEE
Q 028806 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNT-------V------QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~vw~~~~~~-------~------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd 65 (203)
++|+|+|++|+++ ..++.|++|++.... + ......+...+..++|+|+++++++++ .++.|.+|+
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence 4689999976554 458899999887432 1 111223445678999999999887766 689999999
Q ss_pred cCCcccc--ceeeec--cCCCceeEE-EeeCCCEEEEEcCC--CcEEEEEcc--CCc--eeeeeccCCCCceEEEEEeCC
Q 028806 66 WGYFKDC--SDRFVG--LSPNSVDAL-LKLDEDRVITGSEN--GLISLVGIL--PNR--IIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 66 ~~~~~~~--~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d--~~i~~~d~~--~~~--~~~~~~~~~~~~i~~i~~~~~ 134 (203)
+.. +.. +..+.. .+......+ |+|+|++|+++..+ +.|.+|++. +++ .+..+.. ...+..++|+|+
T Consensus 240 ~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spd 316 (361)
T 3scy_A 240 YAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPN 316 (361)
T ss_dssp EET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTT
T ss_pred ecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCC
Confidence 973 222 222221 022345677 99999999777664 889999985 454 3333433 225789999999
Q ss_pred CCeEEEEe-CCCcEEEEeCC
Q 028806 135 RKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 135 ~~~l~~~~-~d~~i~iwd~~ 153 (203)
|++|++++ .++.|.+|.+.
T Consensus 317 g~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 317 GKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SCEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEEE
Confidence 99998888 67889996543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-15 Score=113.00 Aligned_cols=154 Identities=13% Similarity=0.157 Sum_probs=106.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC-CCeEE--EeecC-CccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCc-ccc--
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR-KNTVQ--TRSEF-SEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYF-KDC-- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~-~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~-~~~-- 72 (203)
++|+|+|+++++...++.|++|++. ++... ..+.. ....+..++|+|+++++++ ...++.+.+|++... +..
T Consensus 146 ~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 146 TDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 4689999966777778999999998 55432 22222 2346788999999996665 556889999998631 221
Q ss_pred ceeeeccCC------CceeEE-EeeCCCEEEEE-cCCCcEEEEEccC-C--ceeeeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 73 SDRFVGLSP------NSVDAL-LKLDEDRVITG-SENGLISLVGILP-N--RIIQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 73 ~~~~~~~~~------~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~~-~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
+..+.. .. ..+..+ |+|+|++|+++ ..++.|.+|++.. + +.+..+..+.. .+..++|+|++++|+++
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 226 LGIVKT-IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp EEEEES-SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEE
T ss_pred eeeeee-cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEE
Confidence 222222 11 346677 99999988554 4588999999863 2 34455555433 57899999999999888
Q ss_pred eC-CCcEEEEe--CCCcc
Q 028806 142 SH-DSMLKLWD--LDDIL 156 (203)
Q Consensus 142 ~~-d~~i~iwd--~~~~~ 156 (203)
+. ++.|.+|+ ..++.
T Consensus 304 ~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 304 NQNTDNATLYARDLTSGK 321 (347)
T ss_dssp ETTTTEEEEEEECTTTCC
T ss_pred EcCCCcEEEEEEeCCCCe
Confidence 75 48999994 44444
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=127.47 Aligned_cols=143 Identities=6% Similarity=-0.033 Sum_probs=111.4
Q ss_pred cccccCCE-EEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC----CeEEEEEcCCccccceee
Q 028806 2 TFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 2 ~~sp~~~~-l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~ 76 (203)
+|+|+++. +++...++.+.+|++.+++.......+ . .+++|+|||++|++++.+ ..|++||+.. +. ...+
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~-~~~l 190 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GG-LRVF 190 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CC-CEEE
T ss_pred eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CC-ceEe
Confidence 58888863 333344455669999988765544332 2 789999999999987776 7899999864 33 4466
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCC--cEEEEEccCCceeeeeccCCCCceEEEE--------EeCCCCeEEEEeCCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENG--LISLVGILPNRIIQPIAEHSEYPIESLA--------LSHDRKFLGSISHDS 145 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~i~~i~--------~~~~~~~l~~~~~d~ 145 (203)
.. +...+..+ |+|+|++|+++..++ .|++||+.+++.. .+..+.. .+..+. |+|||.++++++.++
T Consensus 191 ~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g 267 (582)
T 3o4h_A 191 DS-GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREG 267 (582)
T ss_dssp CC-SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred ec-CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence 76 77788888 999999999888888 8999999988887 6666633 566666 999998888999999
Q ss_pred cEEEEeC
Q 028806 146 MLKLWDL 152 (203)
Q Consensus 146 ~i~iwd~ 152 (203)
.+++|++
T Consensus 268 ~~~l~~~ 274 (582)
T 3o4h_A 268 RSAVFID 274 (582)
T ss_dssp EEEEEET
T ss_pred cEEEEEE
Confidence 9999999
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=117.60 Aligned_cols=149 Identities=8% Similarity=0.010 Sum_probs=109.3
Q ss_pred CcccccCCEEEEEcCC------------CeEEEEEcCCCeE---EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEE
Q 028806 1 MTFAADAMKLLGTSGD------------GTLSVCNLRKNTV---QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------------~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 65 (203)
++|+|+|++|++++.+ +.|.+||+.+++. +..+.. ...+.+++|+|+++ +++++. .|++||
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i~~~d 172 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DIYKMD 172 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEESS--SEEEEC
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEccC--cEEEEe
Confidence 4689999999988755 8999999987432 223332 33588899999999 555543 499999
Q ss_pred cCCccccceeeeccCC----------------------------------------------------------------
Q 028806 66 WGYFKDCSDRFVGLSP---------------------------------------------------------------- 81 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 81 (203)
+.+ +.....+.. ..
T Consensus 173 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
T 1jmx_B 173 VKT-GKYTVALPL-RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 250 (349)
T ss_dssp TTT-CCEEEEECS-TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred CCC-Cceeccccc-cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence 864 333333221 11
Q ss_pred ----CceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 82 ----NSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 82 ----~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
..+..+ ++| ++++++++ ++.|.+||+.+++.+..+... . .+.+++|+|++++|++++.++.|.+||+.++
T Consensus 251 ~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 251 ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-H-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-C-CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 022334 578 99999888 789999999999888777654 2 4778999999999988888999999999887
Q ss_pred ccCC
Q 028806 156 LKGS 159 (203)
Q Consensus 156 ~~~~ 159 (203)
+...
T Consensus 327 ~~~~ 330 (349)
T 1jmx_B 327 EKVK 330 (349)
T ss_dssp EEEE
T ss_pred ceee
Confidence 6543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=115.01 Aligned_cols=151 Identities=10% Similarity=0.027 Sum_probs=113.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+ +.....+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEc
Confidence 4678889999999999999999999998887776443 2577899999998665 555689999999974 344444442
Q ss_pred cCC------CceeEE-EeeCCCEEEEEcCC------------CcEEEEEccCCcee---eeeccCCCCceEEEEEeCCCC
Q 028806 79 LSP------NSVDAL-LKLDEDRVITGSEN------------GLISLVGILPNRII---QPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 79 ~~~------~~v~~~-~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~---~~~~~~~~~~i~~i~~~~~~~ 136 (203)
.. ..+..+ |+|+|+++++++.+ +.|.+||+.+++.. ..+..+ . .+.+++|+|+++
T Consensus 84 -~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~-~~~~~~~s~dg~ 160 (349)
T 1jmx_B 84 -SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-R-QVYLMRAADDGS 160 (349)
T ss_dssp -CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-S-SCCCEEECTTSC
T ss_pred -ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-C-cccceeECCCCc
Confidence 22 226677 89999999998865 89999999885433 333333 3 578899999999
Q ss_pred eEEEEeCCCcEEEEeCCCcccC
Q 028806 137 FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+++++ +.|++||+.++...
T Consensus 161 -l~~~~--~~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 161 -LYVAG--PDIYKMDVKTGKYT 179 (349)
T ss_dssp -EEEES--SSEEEECTTTCCEE
T ss_pred -EEEcc--CcEEEEeCCCCcee
Confidence 65554 34999999887643
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-16 Score=124.71 Aligned_cols=151 Identities=10% Similarity=-0.008 Sum_probs=104.9
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEEEecC---CCeEEEEEcCC--ccc--
Q 028806 1 MTFAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGY--FKD-- 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~--~~~-- 71 (203)
++|+|||++||+++. +|+++||++.++.... +..+. ..+..++|+|+ +.+++++. +....+|.+.. .+.
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~ 104 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ 104 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE
T ss_pred eecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc
Confidence 468999999999876 9999999997766544 33333 46777777777 55555443 33344443321 110
Q ss_pred --------------------------------------cceeeeccCCCceeEE-EeeCCCEEEEEcCC----CcEEEEE
Q 028806 72 --------------------------------------CSDRFVGLSPNSVDAL-LKLDEDRVITGSEN----GLISLVG 108 (203)
Q Consensus 72 --------------------------------------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d----~~i~~~d 108 (203)
....+.. +.. .++ |+|+|++|++++.+ +.|++||
T Consensus 105 ~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d 181 (582)
T 3o4h_A 105 RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSN 181 (582)
T ss_dssp ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEc
Confidence 0011111 111 455 89999999988776 7799999
Q ss_pred ccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC--cEEEEeCCCcccC
Q 028806 109 ILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS--MLKLWDLDDILKG 158 (203)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~ 158 (203)
+.+++.. .+..+.. .+..++|+|||++|+++..++ .|++||+.++...
T Consensus 182 ~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 182 LSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp TTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred CCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 9888765 5566644 789999999999999888888 8999999887655
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.6e-16 Score=115.01 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=104.4
Q ss_pred EEEEEcCCCeEEEEEcC-CC--eEEEeecCCccceEEEEEeeCCCEEEEecCC-CeEEEEEcCCc-cc--cceeeeccCC
Q 028806 9 KLLGTSGDGTLSVCNLR-KN--TVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYF-KD--CSDRFVGLSP 81 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~-~~--~~~~~~~~~~ 81 (203)
.+++++.++.|++|++. ++ ..+..+ .+...+.+++|+|++++|++++.+ +.|.+|++... +. .+..+.. +.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-CC
Confidence 44455789999999995 33 333333 356678899999999988888876 99999999621 12 2333443 33
Q ss_pred CceeEE-EeeCCCEEEEEcC-CCcEEEEEcc---CCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCC
Q 028806 82 NSVDAL-LKLDEDRVITGSE-NGLISLVGIL---PNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~---~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
.+..+ |+|+++++++++. ++.|.+|++. ..+.+..+..+ . .+.+++|+|++++|++++ .++.|++||+.+
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-D-GCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-T-TBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-C-CceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 67777 9999998877665 7889999994 44455555554 3 588999999999888887 889999999986
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-15 Score=111.32 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=113.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCcc--ceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeeccCC---
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE--ELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSP--- 81 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--- 81 (203)
++|++++.++.|.+||+.+++.+..+..... .+..++|+|+++.+ +++..++.|.+||+.+ +..+..+.. ..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~-~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDL-STPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEEC-CBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEc-CCccc
Confidence 4788999999999999999988877764332 47889999999766 4556688999999974 455544442 21
Q ss_pred --CceeEE-EeeCCCEEEEEc------------CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 82 --NSVDAL-LKLDEDRVITGS------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 82 --~~v~~~-~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
..+..+ |+|+|+++++++ .++.|.+||+.+++.+..+... . .+.+++|+|++++|+++ ++.
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~--~~~ 155 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-R-QITMLAWARDGSKLYGL--GRD 155 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-S-SCCCEEECTTSSCEEEE--SSS
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-C-CcceeEECCCCCEEEEe--CCe
Confidence 145667 899999999886 5789999999988887777654 3 57889999999988887 688
Q ss_pred EEEEeCCCcccC
Q 028806 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
|++||+.++...
T Consensus 156 i~~~d~~~~~~~ 167 (337)
T 1pby_B 156 LHVMDPEAGTLV 167 (337)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCcEe
Confidence 999999887643
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-15 Score=122.64 Aligned_cols=154 Identities=11% Similarity=0.029 Sum_probs=113.7
Q ss_pred CcccccCCEEEEEc---------------------------------CCCeEEEEEcCCCeEEEeec--CCccceEEEEE
Q 028806 1 MTFAADAMKLLGTS---------------------------------GDGTLSVCNLRKNTVQTRSE--FSEEELTSVVL 45 (203)
Q Consensus 1 l~~sp~~~~l~~~~---------------------------------~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~ 45 (203)
++|||||++|++++ .+..|++||+.+++...... .+...+.+++|
T Consensus 186 ~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 265 (706)
T 2z3z_A 186 TFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSW 265 (706)
T ss_dssp EEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEE
Confidence 36999999999887 44789999999987655442 45677999999
Q ss_pred eeCCCEEEEecCCC-----eEEEEEcCCccccceeee-ccCCC---ceeEE-Eee--CCCEEEEEcCCCcEEEEEcc-CC
Q 028806 46 MKNGRKVVCGSQSG-----TVLLYSWGYFKDCSDRFV-GLSPN---SVDAL-LKL--DEDRVITGSENGLISLVGIL-PN 112 (203)
Q Consensus 46 ~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~-~~~~~---~v~~~-~~~--~~~~l~~~~~d~~i~~~d~~-~~ 112 (203)
+|+++.|++++.++ .|++||+.+ +.....+. ..... .+..+ |+| +|++++++..++.++||.+. ++
T Consensus 266 spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 266 SPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred ECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 99999999877665 899999975 32223322 10221 23556 899 99999999999999999886 56
Q ss_pred ceeeeeccCCCCceEE-EEEeCCCCeEEEEeC-CC----cEEEEeCCCcc
Q 028806 113 RIIQPIAEHSEYPIES-LALSHDRKFLGSISH-DS----MLKLWDLDDIL 156 (203)
Q Consensus 113 ~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~-d~----~i~iwd~~~~~ 156 (203)
..+..+..+.. .+.. ++|+|+++.|+.++. ++ .|..||+.++.
T Consensus 345 ~~~~~l~~~~~-~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 345 RLIRQVTKGEW-EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CEEEECCCSSS-CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred CEEEecCCCCe-EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 67777776643 6766 799999998876654 33 67777876654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=131.54 Aligned_cols=153 Identities=14% Similarity=0.023 Sum_probs=106.9
Q ss_pred CcccccCCEEEEEcC---------CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSG---------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 71 (203)
++|||||++|++++. ++.|++||+.+++.+.... ....+..++|+|||+.|+++. ++.|++|++... .
T Consensus 65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g-~ 141 (719)
T 1z68_A 65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD-P 141 (719)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS-C
T ss_pred EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCC-C
Confidence 369999999998876 6899999999987621111 124588899999999999875 789999999643 3
Q ss_pred cceee-eccCCCc-----------------eeEE-EeeCCCEEEEEcCCC------------------------------
Q 028806 72 CSDRF-VGLSPNS-----------------VDAL-LKLDEDRVITGSENG------------------------------ 102 (203)
Q Consensus 72 ~~~~~-~~~~~~~-----------------v~~~-~~~~~~~l~~~~~d~------------------------------ 102 (203)
..... .+ +... ..++ |+|+|++|++++.+.
T Consensus 142 ~~~l~~~~-~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~ 220 (719)
T 1z68_A 142 PFQITFNG-RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK 220 (719)
T ss_dssp CEECCCCC-BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred cEEEecCC-CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence 32221 11 1111 1467 999999999887542
Q ss_pred ----cEEEEEccCCcee---e-----eeccCCCCceEEEEEeCCCCeEEEEeCC----CcEEEEe----CCCcccC
Q 028806 103 ----LISLVGILPNRII---Q-----PIAEHSEYPIESLALSHDRKFLGSISHD----SMLKLWD----LDDILKG 158 (203)
Q Consensus 103 ----~i~~~d~~~~~~~---~-----~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~iwd----~~~~~~~ 158 (203)
.|++||+.+++.+ . .+..+.. .+..++|+||++++++.... ..|.+|| +.++...
T Consensus 221 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 221 NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCeeEEEEEECCCCCccceeEccCCccCCCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 6889999877642 1 1234533 68999999998777664422 2488999 7666543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=126.05 Aligned_cols=136 Identities=13% Similarity=0.034 Sum_probs=102.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccc-----eEEEEEeeCCCEEEEecCC---------CeEEEEEc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEE-----LTSVVLMKNGRKVVCGSQS---------GTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~i~~wd~ 66 (203)
++|+|+|++|+++ +++|++|++.+++....+..|... ...++|+|||++|+.++.+ +.+.+||+
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred cEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 4799999988886 899999999999877777766532 2447899999999988775 56779999
Q ss_pred CCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec-cCCCCce-----------------E
Q 028806 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-EHSEYPI-----------------E 127 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~i-----------------~ 127 (203)
.+ +. ...+.. +...+... |+|+|+.|+.+ .++.|++|++.++....... ++.. .+ .
T Consensus 100 ~~-~~-~~~l~~-~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~-~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 100 NK-RQ-LITEER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKED-IIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp TT-TE-ECCSSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTT-TEEESBCCHHHHHHTSSSSB
T ss_pred CC-Cc-EEEccc-CCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCcc-ceecCcccccccchhcCCCc
Confidence 75 33 334555 66778888 99999999988 46789999998877554322 2211 12 3
Q ss_pred EEEEeCCCCeEEEEeC
Q 028806 128 SLALSHDRKFLGSISH 143 (203)
Q Consensus 128 ~i~~~~~~~~l~~~~~ 143 (203)
.+.|+|||++|+..+.
T Consensus 175 ~~~wSpDg~~la~~~~ 190 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQF 190 (740)
T ss_dssp CEEECTTSSEEEEEEE
T ss_pred ceEECCCCCEEEEEEE
Confidence 4899999999998763
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-15 Score=113.33 Aligned_cols=152 Identities=9% Similarity=0.092 Sum_probs=106.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC-CCeEEEeecCC-ccceEEEEEeeCCCE--EEEec-------------CCCeEEE
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR-KNTVQTRSEFS-EEELTSVVLMKNGRK--VVCGS-------------QSGTVLL 63 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~d~~i~~ 63 (203)
++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ +++++ .++.+.+
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v 123 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence 4789999999888887 99999997 77664432211 123456889999984 45553 6899999
Q ss_pred EEcCCccccceeeec---cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEcc-CCcee--eeeccCC-CCceEEEEEeCC
Q 028806 64 YSWGYFKDCSDRFVG---LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGIL-PNRII--QPIAEHS-EYPIESLALSHD 134 (203)
Q Consensus 64 wd~~~~~~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~-~~~~~--~~~~~~~-~~~i~~i~~~~~ 134 (203)
|++...+.....+.. .+...+.++ |+|+|+++++++. ++.|++|++. +++.. ..+.... ...+..++|+|+
T Consensus 124 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd 203 (365)
T 1jof_A 124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT 203 (365)
T ss_dssp EEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT
T ss_pred EccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC
Confidence 999643443333321 023457777 9999998887664 6789999998 67643 2333111 235889999999
Q ss_pred CCeEEEEeC-CCcEEEEeCC
Q 028806 135 RKFLGSISH-DSMLKLWDLD 153 (203)
Q Consensus 135 ~~~l~~~~~-d~~i~iwd~~ 153 (203)
|++|++++. ++.|.+|++.
T Consensus 204 g~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 204 GNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp SSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEEEe
Confidence 999988774 6899999764
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-14 Score=106.43 Aligned_cols=153 Identities=8% Similarity=0.002 Sum_probs=104.7
Q ss_pred CcccccCCE--EEEEc-------------CCCeEEEEEcC-CCeEEEeec----CCccceEEEEEeeCCCEEEEecC-CC
Q 028806 1 MTFAADAMK--LLGTS-------------GDGTLSVCNLR-KNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQ-SG 59 (203)
Q Consensus 1 l~~sp~~~~--l~~~~-------------~d~~i~vw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-d~ 59 (203)
++|+|+|++ ++++. .++.+.+|++. .++....+. .+...+.+++|+|+|++|++++. ++
T Consensus 88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 167 (365)
T 1jof_A 88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN 167 (365)
T ss_dssp GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCC
Confidence 478999994 44553 68999999997 455543333 24567899999999998887654 67
Q ss_pred eEEEEEcCCcccc--ceeeec-cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEcc--CCcee------eeeccCC-C-C
Q 028806 60 TVLLYSWGYFKDC--SDRFVG-LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGIL--PNRII------QPIAEHS-E-Y 124 (203)
Q Consensus 60 ~i~~wd~~~~~~~--~~~~~~-~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~--~~~~~------~~~~~~~-~-~ 124 (203)
.|++|++...+.. +..+.. .+...+..+ |+|+|+++++++. ++.|.+|++. +++.. ..+.... . .
T Consensus 168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence 9999999621222 122321 024457777 9999999988775 6889999865 45542 1222110 1 1
Q ss_pred -------ceEEEE-EeCCCCeEEEEeCC-C-----cEEEEeCC
Q 028806 125 -------PIESLA-LSHDRKFLGSISHD-S-----MLKLWDLD 153 (203)
Q Consensus 125 -------~i~~i~-~~~~~~~l~~~~~d-~-----~i~iwd~~ 153 (203)
.+..++ |+|+|++|+++..+ . .|.+|++.
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 378899 99999998876643 2 89999986
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-13 Score=105.00 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=103.8
Q ss_pred CcccccCCEEEEEcCC----CeEEEEEcCC--CeE--EEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGD----GTLSVCNLRK--NTV--QTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d----~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~ 71 (203)
|+|+|+|++|++++.+ +.|.+|++.. +.. +.....+......+++ ++++|++++ .++.+.+|++...+.
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~ 132 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA 132 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc
Confidence 4799999999888875 7999998865 443 3333334556777777 788777666 578999999964332
Q ss_pred ccee---ee--c-------cCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCce------e------eeeccCCCCc
Q 028806 72 CSDR---FV--G-------LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRI------I------QPIAEHSEYP 125 (203)
Q Consensus 72 ~~~~---~~--~-------~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~------~------~~~~~~~~~~ 125 (203)
.... +. + .+...+.++ |+|+|+++++++ .++.|.+|++..... + ..........
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 212 (361)
T 3scy_A 133 LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSG 212 (361)
T ss_dssp BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCC
T ss_pred CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCC
Confidence 2111 11 0 001223667 899999776655 478999999875431 1 1222222335
Q ss_pred eEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028806 126 IESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 126 i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
+..++|+|+|++|++++ .++.|.+|++.++
T Consensus 213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 78999999999888777 6899999998755
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-14 Score=108.33 Aligned_cols=151 Identities=11% Similarity=0.029 Sum_probs=111.7
Q ss_pred cccccCCEEEEEcC-CC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKLLGTSG-DG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~-d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
+|||||++|++++. ++ .|++|++.+++.......+...+..+.|+|+++.|+.++.++.|++||+.. +.....+..
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-g~~~~~~~~ 120 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT-LEENVVYQV 120 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEEC
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC-Ccceeeeec
Confidence 69999999988876 66 488999999888776666655555678999999999999999999999975 344333443
Q ss_pred cCCCceeEE---EeeCCCEEEEE----------------------cCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC
Q 028806 79 LSPNSVDAL---LKLDEDRVITG----------------------SENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 79 ~~~~~v~~~---~~~~~~~l~~~----------------------~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~ 133 (203)
+...+... ++|++.+++.. ..+..|.+||+.+++...... +.. .+..+.|+|
T Consensus 121 -~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~~~~~~sp 197 (388)
T 3pe7_A 121 -PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-ENQ-WLGHPIYRP 197 (388)
T ss_dssp -CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-ESS-CEEEEEEET
T ss_pred -hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-CCc-cccccEECC
Confidence 44433322 48899988742 234679999999887655443 323 688999999
Q ss_pred -CCCeEEEEeCC------CcEEEEeCCCcc
Q 028806 134 -DRKFLGSISHD------SMLKLWDLDDIL 156 (203)
Q Consensus 134 -~~~~l~~~~~d------~~i~iwd~~~~~ 156 (203)
+|+.|+.+..+ ..|.++++.+..
T Consensus 198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 198 YDDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp TEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred CCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 99998877753 378888876654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=120.43 Aligned_cols=150 Identities=11% Similarity=0.059 Sum_probs=106.7
Q ss_pred cccccCCEEEEEcCC---------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028806 2 TFAADAMKLLGTSGD---------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
+|||||++|++++.+ +.+.+||+.+++.. .+..+...+..++|+|||+.|+.+. ++.|++|++... ..
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~-~~ 144 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL-PS 144 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS-CC
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC-ce
Confidence 579999999998765 56779999998764 4666778899999999999998874 689999998643 32
Q ss_pred ce-eeeccCCCc-----------------eeEE-EeeCCCEEEEEcCCC-------------------------------
Q 028806 73 SD-RFVGLSPNS-----------------VDAL-LKLDEDRVITGSENG------------------------------- 102 (203)
Q Consensus 73 ~~-~~~~~~~~~-----------------v~~~-~~~~~~~l~~~~~d~------------------------------- 102 (203)
.+ +..+ +... ...+ |+|||++|+.++.|.
T Consensus 145 ~~lt~~g-~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 145 YRITWTG-KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp EECCSCC-BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred EEEcCCC-CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 22 1112 2111 1246 899999999875321
Q ss_pred -----cEEEEEccC---Cc--eeeeecc------CCCCceEEEEEeCCCCeEEEEeC----CCcEEEEeCCCcc
Q 028806 103 -----LISLVGILP---NR--IIQPIAE------HSEYPIESLALSHDRKFLGSISH----DSMLKLWDLDDIL 156 (203)
Q Consensus 103 -----~i~~~d~~~---~~--~~~~~~~------~~~~~i~~i~~~~~~~~l~~~~~----d~~i~iwd~~~~~ 156 (203)
.|++||+.+ ++ ....+.. + ...+..++|+|||+.++.... +..|++||+.++.
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIG-DHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTS-CEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCC-CeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 478899888 73 2222322 4 336889999999997665432 3369999998876
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.2e-15 Score=119.72 Aligned_cols=152 Identities=12% Similarity=0.036 Sum_probs=110.3
Q ss_pred CcccccCCEEEEEcCC----------CeEEEEEcCC------CeEEEeec-CCccceEEEEEeeCCCEEEEecCC-----
Q 028806 1 MTFAADAMKLLGTSGD----------GTLSVCNLRK------NTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQS----- 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d----------~~i~vw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d----- 58 (203)
++|||||+.|++++.+ ..|++|++.+ +... .+. .+...+..++|+|||++|+.++.+
T Consensus 135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCT
T ss_pred cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCC
Confidence 3699999999988776 5899999987 5543 444 555678889999999999877754
Q ss_pred ---CeEEEEEcCCcc---ccceeeeccCCCceeEE-EeeCCCEEEEEcCCC--cEEEEEccCCceeeeeccCCCC-----
Q 028806 59 ---GTVLLYSWGYFK---DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG--LISLVGILPNRIIQPIAEHSEY----- 124 (203)
Q Consensus 59 ---~~i~~wd~~~~~---~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~----- 124 (203)
..|++||+...+ ........ +...+..+ |+|+|++++++..++ .|.+|++.+++.......+...
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w 292 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLW 292 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCC
T ss_pred CCCcEEEEEEECCCCcccccEEeCCC-CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccc
Confidence 379999997323 23333333 45678888 999999777777777 5777777677655444433211
Q ss_pred --ceEEEEEeCCCCeEEEEeCCCcEEEE--eCCCc
Q 028806 125 --PIESLALSHDRKFLGSISHDSMLKLW--DLDDI 155 (203)
Q Consensus 125 --~i~~i~~~~~~~~l~~~~~d~~i~iw--d~~~~ 155 (203)
.+..++|+|++++++++.. +.++|| |+.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 1567899999999999988 988888 55544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-13 Score=98.42 Aligned_cols=150 Identities=11% Similarity=0.132 Sum_probs=111.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
|+++|+|+++++...++.|.+|+.. ++.+..+. .+...+..++++|+++++++...++.|++|+.. +..+..+..
T Consensus 126 i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~ 202 (286)
T 1q7f_A 126 VTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGG 202 (286)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESC
T ss_pred EEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC--CCEEEEEcc
Confidence 4678999988888888999999965 44444443 334568999999999988887788999999974 344445543
Q ss_pred cC--CCceeEE-EeeCCCEEEEEcCCC-cEEEEEccCCceeeeeccCCC-CceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 79 LS--PNSVDAL-LKLDEDRVITGSENG-LISLVGILPNRIIQPIAEHSE-YPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~--~~~v~~~-~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. ...+..+ ++++|+++++...++ .|.+|+. .++.+..+..+.. ..+.+++++|+|+++++ +.++.|++|++.
T Consensus 203 -~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 203 -EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp -TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred -CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 2 2456777 899998888887775 9999995 4666666655432 14779999999986666 679999999986
Q ss_pred Ccc
Q 028806 154 DIL 156 (203)
Q Consensus 154 ~~~ 156 (203)
...
T Consensus 280 ~~~ 282 (286)
T 1q7f_A 280 QLA 282 (286)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-13 Score=104.53 Aligned_cols=153 Identities=12% Similarity=0.018 Sum_probs=108.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEE--EeeCCCEEEEe----------------------c
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVV--LMKNGRKVVCG----------------------S 56 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~ 56 (203)
++|+|+|+.|++++.++.|++|++.+++.......+...+.... ++|++.+++.. .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 36999999999999989999999999877665555555554444 47899888742 2
Q ss_pred CCCeEEEEEcCCccccceeeeccCCCceeEE-Eee-CCCEEEEEcCC------CcEEEEEccCCceeeeeccCCC-CceE
Q 028806 57 QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSEN------GLISLVGILPNRIIQPIAEHSE-YPIE 127 (203)
Q Consensus 57 ~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~-~~i~ 127 (203)
.+..|++||+.+ +. ...+.. +...+..+ |+| +|+.|+.+... ..|.++++..+.... +..+.. ..+.
T Consensus 166 ~~~~l~~~d~~~-g~-~~~l~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~ 241 (388)
T 3pe7_A 166 PCCRLMRVDLKT-GE-STVILQ-ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCT 241 (388)
T ss_dssp CCEEEEEEETTT-CC-EEEEEE-ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEE
T ss_pred CcceEEEEECCC-Cc-eEEeec-CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccc
Confidence 346799999874 33 344444 56667778 999 99998877653 368888876654443 333322 2577
Q ss_pred EEEEeCCCCeEEEEeC-CC----cEEEEeCCCccc
Q 028806 128 SLALSHDRKFLGSISH-DS----MLKLWDLDDILK 157 (203)
Q Consensus 128 ~i~~~~~~~~l~~~~~-d~----~i~iwd~~~~~~ 157 (203)
.+.|+|+|+.|+..+. ++ .|++||+.++..
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 8899999998866543 22 399999988763
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.4e-14 Score=114.88 Aligned_cols=150 Identities=11% Similarity=-0.012 Sum_probs=107.1
Q ss_pred cccCCE-EEEEcC-CCeEEEEEcC--C-CeEEEeecC-----CccceEEEEEeeCCCEEEEecCC----------CeEEE
Q 028806 4 AADAMK-LLGTSG-DGTLSVCNLR--K-NTVQTRSEF-----SEEELTSVVLMKNGRKVVCGSQS----------GTVLL 63 (203)
Q Consensus 4 sp~~~~-l~~~~~-d~~i~vw~~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~ 63 (203)
||||+. |+.++. +..|+++++. + +. ...+.. +...+..++|+|||+.|++++.+ ..|++
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 499998 776654 5677777776 3 43 344544 56778999999999999988876 58999
Q ss_pred EEcCCcc----ccceeee-ccCCCceeEE-EeeCCCEEEEEcCC--------CcEEEEEcc-CC---ceeeeeccCCCCc
Q 028806 64 YSWGYFK----DCSDRFV-GLSPNSVDAL-LKLDEDRVITGSEN--------GLISLVGIL-PN---RIIQPIAEHSEYP 125 (203)
Q Consensus 64 wd~~~~~----~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d--------~~i~~~d~~-~~---~~~~~~~~~~~~~ 125 (203)
|++.... .....+. . +...+..+ |+|+|++|++++.+ ..|++||+. ++ +.......+ ...
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-~~~ 243 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDD-AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP-EEA 243 (662)
T ss_dssp EETTSTTTTCGGGSEESSCS-CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-TBC
T ss_pred EECCCCccccCCceeEEEec-CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC-Cce
Confidence 9987410 2334444 4 55566667 99999999987754 379999998 56 444434443 337
Q ss_pred eEEEEEeCCCCeEEEEeCCC--cEEEEeCCCcc
Q 028806 126 IESLALSHDRKFLGSISHDS--MLKLWDLDDIL 156 (203)
Q Consensus 126 i~~i~~~~~~~~l~~~~~d~--~i~iwd~~~~~ 156 (203)
+..+.|+|||++++++..++ .|.+|++.++.
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 89999999999777777777 67777765554
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=98.80 Aligned_cols=154 Identities=11% Similarity=0.009 Sum_probs=114.2
Q ss_pred CcccccCCEEEEEcCC------------------------CeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEe
Q 028806 1 MTFAADAMKLLGTSGD------------------------GTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCG 55 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------------------------~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 55 (203)
|+++|+|+++++...+ +.|.+||..+++.+..+. .+-..+..++++|+++++++.
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d 108 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD 108 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence 5789999998888776 479999998888766554 334578899999999988888
Q ss_pred cCCCeEEEEEcCCccccceeee---------ccCCCceeEE-Eee-CCCEEEEEc-CCCcEEEEEccCCceeeeeccCCC
Q 028806 56 SQSGTVLLYSWGYFKDCSDRFV---------GLSPNSVDAL-LKL-DEDRVITGS-ENGLISLVGILPNRIIQPIAEHSE 123 (203)
Q Consensus 56 ~~d~~i~~wd~~~~~~~~~~~~---------~~~~~~v~~~-~~~-~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~ 123 (203)
..++.|++|+.......+..+. . +...+..+ ++| ++.++++.+ .++.|++|+ .++..+..+.....
T Consensus 109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~-~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~ 186 (329)
T 3fvz_A 109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQN-HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESS 186 (329)
T ss_dssp TTTTEEEEECTTCSSCCSEEESBTTBCCCSTT-CCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECC
T ss_pred CCCCEEEEEeCCCCeEEEEEecccCCCCCCcc-ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCC
Confidence 8899999999753211344442 2 23356777 899 788777776 689999999 56777666642211
Q ss_pred ---------CceEEEEEeCC-CCeEEEEeCCCcEEEEeCCCcc
Q 028806 124 ---------YPIESLALSHD-RKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 124 ---------~~i~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.....++++|+ ++++++...++.|++|+..++.
T Consensus 187 ~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~ 229 (329)
T 3fvz_A 187 GSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE 229 (329)
T ss_dssp SSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc
Confidence 13789999998 6666777788999999998544
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-13 Score=111.06 Aligned_cols=153 Identities=8% Similarity=-0.012 Sum_probs=105.8
Q ss_pred CcccccCCEEEEEcCCC-----eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCe---------------
Q 028806 1 MTFAADAMKLLGTSGDG-----TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT--------------- 60 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------- 60 (203)
++|||||++||.+..++ .|++||+.+++.+..... ...+..++|+||++.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ 208 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence 36999999998775433 899999999987653222 223667999999999998877655
Q ss_pred -EEEEEcCCcccc-ceeeecc-CCCceeEE-EeeCCCEEEEEcC-----CCcEEEEEccC------Cc-eeeeeccCCCC
Q 028806 61 -VLLYSWGYFKDC-SDRFVGL-SPNSVDAL-LKLDEDRVITGSE-----NGLISLVGILP------NR-IIQPIAEHSEY 124 (203)
Q Consensus 61 -i~~wd~~~~~~~-~~~~~~~-~~~~v~~~-~~~~~~~l~~~~~-----d~~i~~~d~~~------~~-~~~~~~~~~~~ 124 (203)
|++|++.+.... ...+... +...+..+ |+|+|++|+.++. +..|++||+.+ +. ....+..+..
T Consensus 209 ~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~- 287 (710)
T 2xdw_A 209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE- 287 (710)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-
T ss_pred EEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC-
Confidence 999999753221 1122220 23335566 8999999988764 56799999986 43 3445555544
Q ss_pred ceEEEEEeCCCCeEEEEeCC----CcEEEEeCCCcc
Q 028806 125 PIESLALSHDRKFLGSISHD----SMLKLWDLDDIL 156 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d----~~i~iwd~~~~~ 156 (203)
.+.. .|+|+|..|+..+.. ..|.+||+.++.
T Consensus 288 ~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 288 GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 4444 588999888766643 369999998764
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=105.72 Aligned_cols=153 Identities=8% Similarity=-0.073 Sum_probs=103.1
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEE-------------------EEEeeCCCEEEEe-----cC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTS-------------------VVLMKNGRKVVCG-----SQ 57 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~ 57 (203)
.|+|+|++|++++.++.|++|++.+++.......+...... +.|+|+++.++.. ..
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 87 FISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred eECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 58999999999988899999999988765544433332222 2456666655543 34
Q ss_pred CCeEEEEEcCCccccceeeeccCCCceeEE-Eee-CCCEEEEEcCC------CcEEEEEccCCceeeeeccCCCCceEEE
Q 028806 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKL-DEDRVITGSEN------GLISLVGILPNRIIQPIAEHSEYPIESL 129 (203)
Q Consensus 58 d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~i~~i 129 (203)
+..|++||+.. +.. ..+.. +...+..+ |+| ++..|+..+.+ ..|.+|++..++............+..+
T Consensus 167 ~~~l~~~d~~~-g~~-~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 167 TCRLIKVDIET-GEL-EVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp CEEEEEEETTT-CCE-EEEEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred cceEEEEECCC-CcE-Eeecc-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 56899999864 333 33334 56667777 899 78877766543 3688888876554433332112257889
Q ss_pred EEeCCCCeEEEEeCC-----CcEEEEeCCCccc
Q 028806 130 ALSHDRKFLGSISHD-----SMLKLWDLDDILK 157 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~ 157 (203)
.|+|+|++|+.++.+ +.|++||+.++..
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 999999988776543 4499999987653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=98.14 Aligned_cols=151 Identities=11% Similarity=0.070 Sum_probs=109.0
Q ss_pred Ccccc-cCCEEEEEc-CCCeEEEEEcCCCeEEEeecC----------CccceEEEEEeeC-CCEEEEecCCCeEEEEEcC
Q 028806 1 MTFAA-DAMKLLGTS-GDGTLSVCNLRKNTVQTRSEF----------SEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 1 l~~sp-~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~ 67 (203)
|+|+| +++++++.+ .++.|++|+ .++..+..+.. +-.....++++|+ +.++++...++.|++|+..
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 46888 788888876 689999999 55666655532 2234889999998 6777777788999999986
Q ss_pred Cccccceeeec-cCCCceeEE-Eee------CCCEEEEEcCCCcEEEEEccCCceeeeec---cCCCCceEEEEEeCCCC
Q 028806 68 YFKDCSDRFVG-LSPNSVDAL-LKL------DEDRVITGSENGLISLVGILPNRIIQPIA---EHSEYPIESLALSHDRK 136 (203)
Q Consensus 68 ~~~~~~~~~~~-~~~~~v~~~-~~~------~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~~i~~i~~~~~~~ 136 (203)
+ +..+..+.. .+...+..+ ++| ++...++......|++|++.+++.+..+. .+.. .+..++++|+|.
T Consensus 227 ~-G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~ 304 (329)
T 3fvz_A 227 T-KEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGT 304 (329)
T ss_dssp T-CCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSE
T ss_pred C-CcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCC
Confidence 3 455555532 034456677 777 33322223345589999999999888873 3433 688999999997
Q ss_pred eEEEEeCCCcEEEEeCCC
Q 028806 137 FLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~ 154 (203)
.+++...++.|++|++..
T Consensus 305 lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEESSSCCEEEEEEEE
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 777888899999999864
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-12 Score=97.92 Aligned_cols=64 Identities=11% Similarity=0.195 Sum_probs=55.5
Q ss_pred EeeCCCEEEEEcC-----------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 88 LKLDEDRVITGSE-----------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 88 ~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
++|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|+|+|++|++++. +.|.+||+.++
T Consensus 261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 7899888887653 3479999999999999998773 789999999999998887 99999999988
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-13 Score=102.06 Aligned_cols=139 Identities=10% Similarity=0.097 Sum_probs=104.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-----------EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----------VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 69 (203)
|++++...++++|+.+ .+.+|++.... ..... .+.. |+.++| ++.+|+++ .++.|++||+...
T Consensus 43 Lais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl 116 (388)
T 1xip_A 43 LDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL 116 (388)
T ss_dssp EEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST
T ss_pred EEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh
Confidence 4688899999999886 56679865322 11122 2445 999999 88999998 8899999999754
Q ss_pred cccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEE
Q 028806 70 KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148 (203)
Q Consensus 70 ~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 148 (203)
. ....... +...+..+ +.+. .+++++.+|.|.+||+.++.... +.. .|.+++|+|+| ++.+..||.|+
T Consensus 117 ~-~~~~~~~-~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~-~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 117 S-EFRTVTS-FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQ-NVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp T-CEEEEEE-CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEE-SEEEEEECSSE--EEEEETTSCEE
T ss_pred h-ccCccce-eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccC-CceEEEEcCCc--eEEEEcCCcEE
Confidence 3 3344555 66677776 4332 38888999999999999877653 213 69999999999 67888999999
Q ss_pred EEeCCCcc
Q 028806 149 LWDLDDIL 156 (203)
Q Consensus 149 iwd~~~~~ 156 (203)
+|+..+..
T Consensus 186 ~~~~~~~~ 193 (388)
T 1xip_A 186 SFAWRNGE 193 (388)
T ss_dssp EEEEETTE
T ss_pred EEcCCCcc
Confidence 99887766
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.2e-12 Score=93.96 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=106.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC----CeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----GTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~ 76 (203)
++|+|++++++++..++.|.+|+..+++.......+...+.+++++|+++++++...+ +.|.+||... +.....+
T Consensus 50 ~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~ 128 (333)
T 2dg1_A 50 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDII 128 (333)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEEE
T ss_pred cEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEEEE
Confidence 3688999988888888999999998877655443456779999999999988877666 6899999864 2322122
Q ss_pred e--ccCCCceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEE-eCCCc
Q 028806 77 V--GLSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSM 146 (203)
Q Consensus 77 ~--~~~~~~v~~~-~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~ 146 (203)
. . ....+..+ ++|+|+++++... .+.|..++..+++........ . .+..++|+|++++|+.+ ..++.
T Consensus 129 ~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~i~~~~dg~~l~v~~~~~~~ 205 (333)
T 2dg1_A 129 EDLS-TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI-S-VANGIALSTDEKVLWVTETTANR 205 (333)
T ss_dssp CSSS-SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE-S-SEEEEEECTTSSEEEEEEGGGTE
T ss_pred ccCc-cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC-C-cccceEECCCCCEEEEEeCCCCe
Confidence 2 2 23457777 8999987776653 345666666555544332222 2 57889999999866554 45789
Q ss_pred EEEEeCCC
Q 028806 147 LKLWDLDD 154 (203)
Q Consensus 147 i~iwd~~~ 154 (203)
|.+|++.+
T Consensus 206 i~~~d~~~ 213 (333)
T 2dg1_A 206 LHRIALED 213 (333)
T ss_dssp EEEEEECT
T ss_pred EEEEEecC
Confidence 99999853
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=102.20 Aligned_cols=155 Identities=11% Similarity=0.010 Sum_probs=109.9
Q ss_pred CcccccCCEEEEEcCCCe----------------EEEEEcCCCe----EEEeecCCccceEEEEEeeCCCEEEEecC---
Q 028806 1 MTFAADAMKLLGTSGDGT----------------LSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQ--- 57 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~----------------i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 57 (203)
++|+|||+.|++++.++. |++|++.++. .+.....+...+..+.|+|++++|+.++.
T Consensus 176 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 255 (710)
T 2xdw_A 176 MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC 255 (710)
T ss_dssp EEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS
T ss_pred EEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC
Confidence 479999999999887765 9999998764 33333334556789999999999887664
Q ss_pred --CCeEEEEEcCC------ccccceeeeccCCCceeEEEeeCCCEEEEEcCC----CcEEEEEccCCce--eeeeccCCC
Q 028806 58 --SGTVLLYSWGY------FKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN----GLISLVGILPNRI--IQPIAEHSE 123 (203)
Q Consensus 58 --d~~i~~wd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~--~~~~~~~~~ 123 (203)
+..|++||+.. .......+.. +...+...|+|+|..|+..+.. +.|.+|++.++.. ...+..+..
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 334 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLID-NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred CCccEEEEEECcccccccCCccceEEeeC-CCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence 56899999864 2224556666 6666665689999988876653 3699999887642 233434423
Q ss_pred -CceEEEEEeCCCCeEEEEeCCCc--EEEEeCCCcc
Q 028806 124 -YPIESLALSHDRKFLGSISHDSM--LKLWDLDDIL 156 (203)
Q Consensus 124 -~~i~~i~~~~~~~~l~~~~~d~~--i~iwd~~~~~ 156 (203)
..+..+.|++++.++++...++. |.+|++.++.
T Consensus 335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence 25778999987778888887874 6667775543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-13 Score=101.36 Aligned_cols=152 Identities=10% Similarity=-0.026 Sum_probs=102.5
Q ss_pred CcccccCCEEEEEcC---CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSG---DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
++|||+|++|+.... +..|++|++.+++.......+......+.|+|+++.|+.++.++.|++|++.. +.......
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~~~~~ 119 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET-LEEQVIYT 119 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEE
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC-CCcEEEEe
Confidence 469999999877644 24789999988876544333322233378999999999998888999999864 33333333
Q ss_pred ccCCCceeE-------------------E-EeeCCCEEEEE-----cCCCcEEEEEccCCceeeeeccCCCCceEEEEEe
Q 028806 78 GLSPNSVDA-------------------L-LKLDEDRVITG-----SENGLISLVGILPNRIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 78 ~~~~~~v~~-------------------~-~~~~~~~l~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~ 132 (203)
. +...... + ++|+++.++.+ ..+..|.+||+.+++...... +.. .+..+.|+
T Consensus 120 ~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~~-~~~~~~~s 196 (396)
T 3c5m_A 120 V-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-DTA-WLGHPIYR 196 (396)
T ss_dssp C-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-ESS-CEEEEEEE
T ss_pred c-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-CCc-ccccceEC
Confidence 2 2221111 2 46667666554 345679999998887665553 323 68899999
Q ss_pred C-CCCeEEEEeCC------CcEEEEeCCCcc
Q 028806 133 H-DRKFLGSISHD------SMLKLWDLDDIL 156 (203)
Q Consensus 133 ~-~~~~l~~~~~d------~~i~iwd~~~~~ 156 (203)
| ++..|+..+.+ ..|.+|++.+..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 9 78877766543 468899986654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-12 Score=92.66 Aligned_cols=145 Identities=11% Similarity=0.070 Sum_probs=112.9
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-cceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC-C
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-N 82 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~ 82 (203)
..+++|++++.++.|.+||..+++.+..+..+. ..+.++.++|+|+++++ .++.|+.||. + ++.+..+.. .. .
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~-G~~~W~~~~-~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-D-GRELWNIAA-PAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-T-SCEEEEEEC-CTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-C-CCEEEEEcC-CCCc
Confidence 346889999999999999999999999988765 46889999999998883 4678999998 3 566666665 42 4
Q ss_pred ceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCC-----CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 83 SVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSE-----YPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.+.++ +.|+|+++++.+. .+.|..++. +|+.+..+..... .....+.+.++|++|++...++.|.+||.. +
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 56666 7899999999887 777877875 6777766542211 134566789999999999999999999987 5
Q ss_pred c
Q 028806 156 L 156 (203)
Q Consensus 156 ~ 156 (203)
+
T Consensus 156 ~ 156 (276)
T 3no2_A 156 Q 156 (276)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-11 Score=88.14 Aligned_cols=148 Identities=9% Similarity=0.150 Sum_probs=107.6
Q ss_pred cc-cccCCEEEEEcC-CCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-
Q 028806 2 TF-AADAMKLLGTSG-DGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 2 ~~-sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
++ .++++++++... ++.|++|+ .+++.+..+. .+...+..++++|+++++++...++.|.+|+.. +..+..+.
T Consensus 83 ~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~ 159 (286)
T 1q7f_A 83 AVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGC 159 (286)
T ss_dssp EEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEEC
T ss_pred EEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCC
Confidence 45 356666666533 78999999 5566655554 334568999999999988887788999999964 34444443
Q ss_pred -ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEeCCC-cEEEEeCC
Q 028806 78 -GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDS-MLKLWDLD 153 (203)
Q Consensus 78 -~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~-~i~iwd~~ 153 (203)
. +...+..+ ++|+|+++++...++.|++|+. .++.+..+..+. ...+..++++|+|+++++...++ .|.+|+..
T Consensus 160 ~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 160 SK-HLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp TT-TCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred CC-ccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 2 33456778 8999998777778899999997 456665564431 12678999999998888877775 99999965
Q ss_pred C
Q 028806 154 D 154 (203)
Q Consensus 154 ~ 154 (203)
.
T Consensus 238 g 238 (286)
T 1q7f_A 238 G 238 (286)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=107.87 Aligned_cols=150 Identities=9% Similarity=-0.035 Sum_probs=99.3
Q ss_pred CcccccCCEEEEE-----cCCCeEEEEEcCCCeEEEeecCCccc--eEEEEEeeCCCEEEEecCCCe-------------
Q 028806 1 MTFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEE--LTSVVLMKNGRKVVCGSQSGT------------- 60 (203)
Q Consensus 1 l~~sp~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~------------- 60 (203)
++|||||++||.+ +.+..|++||+.+++.+. ..+... ...++|+||++.|+.++.+..
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~ 203 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTT 203 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCE
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCE
Confidence 3699999999843 345789999999987531 111112 267899999999999887665
Q ss_pred EEEEEcCCccc---cceeeeccCCCceeEE-EeeCCCEEEEEcCCC----cEEEEEccCCceeeeeccCCCCceEEEEEe
Q 028806 61 VLLYSWGYFKD---CSDRFVGLSPNSVDAL-LKLDEDRVITGSENG----LISLVGILPNRIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 61 i~~wd~~~~~~---~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~ 132 (203)
|++|++.+... .+..... +...+..+ |+|+|++|+.++.++ .|++++..++... .+..+.. .+....+
T Consensus 204 v~~~~l~t~~~~~~lv~~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~-~~~~~~~- 279 (695)
T 2bkl_A 204 IRYHTLGTEPSKDTVVHERTG-DPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVG-AKYEVHA- 279 (695)
T ss_dssp EEEEETTSCGGGCEEEECCCC-CTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSS-CCEEEEE-
T ss_pred EEEEECCCCchhceEEEecCC-CCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCC-ceEEEEe-
Confidence 99999975332 1111222 33456677 999999998877665 6777776555443 3444434 4556666
Q ss_pred CCCCeEEEEe---CCCcEEEEeCCCcc
Q 028806 133 HDRKFLGSIS---HDSMLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~~~l~~~~---~d~~i~iwd~~~~~ 156 (203)
+++.+++... .++.|.+||+.++.
T Consensus 280 ~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 280 WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 5556444433 25789999997764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.2e-11 Score=95.77 Aligned_cols=150 Identities=9% Similarity=0.034 Sum_probs=111.9
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcC-CccccceeeeccCCCc
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG-YFKDCSDRFVGLSPNS 83 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~ 83 (203)
|.+.++++...++.|.++|..+++.+..+... ..+..+.|+|+++++++++.++.|.+||+. .....+..+.. .. .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~-~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GS-E 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CS-E
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CC-C
Confidence 44456677788899999999999888887643 356789999999999999999999999994 12345555554 33 3
Q ss_pred eeEE-Ee----eCCCEEEEEcC-CCcEEEEEccCCceeeeeccCC----------C------------------------
Q 028806 84 VDAL-LK----LDEDRVITGSE-NGLISLVGILPNRIIQPIAEHS----------E------------------------ 123 (203)
Q Consensus 84 v~~~-~~----~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~----------~------------------------ 123 (203)
...+ |+ |+|+++++++. .+.|.++|..+.+.+..+.... .
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 4566 88 69999998876 5889999988877665543110 0
Q ss_pred --------------------CceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCccc
Q 028806 124 --------------------YPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILK 157 (203)
Q Consensus 124 --------------------~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~ 157 (203)
.....+.|+|++++++++. .++.|.++|+.++..
T Consensus 322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 0123567999999887766 678899999988753
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-12 Score=94.80 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=97.9
Q ss_pred CcccccCCEEEEEcC---------------------------CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE
Q 028806 1 MTFAADAMKLLGTSG---------------------------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV 53 (203)
Q Consensus 1 l~~sp~~~~l~~~~~---------------------------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 53 (203)
++|+|+|+.|+.++. ...|++|++.+++.+..+.. . .+..++|+|++ +++
T Consensus 109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVV 185 (347)
T ss_dssp EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEE
Confidence 369999999888763 25799999998876444444 3 78899999999 777
Q ss_pred EecCCC-------eEEEEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcCC--------CcEEEEEccCCceeeee
Q 028806 54 CGSQSG-------TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN--------GLISLVGILPNRIIQPI 118 (203)
Q Consensus 54 ~~~~d~-------~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~ 118 (203)
++..+. ...+|.+. .+ ....+.. + ..+..+ +|+|++|+.++.+ ..|.+|| +++.....
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d-~~-~~~~l~~-~-~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWE-DG-KEEKMFE-K-VSFYAV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEE-TT-EEEEEEE-E-ESEEEE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred EEecccccccccccccEEEeC-CC-ceEEecc-C-cceeeE-CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 775542 44555554 23 3344554 4 344444 9999998877643 3688888 56655544
Q ss_pred ccCCCCceEE-EEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 119 AEHSEYPIES-LALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 119 ~~~~~~~i~~-i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
..+ ...+.. +.|+ ++ ++++++.++.+++| +.+
T Consensus 259 ~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 259 DEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp TTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred ccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 554 336776 8999 88 88888899999999 863
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-11 Score=90.97 Aligned_cols=148 Identities=7% Similarity=-0.017 Sum_probs=114.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+++|+|++|++ .++.|..||. +++.+..+..+ ...+.++.+.++|+++++.+. ++.+..++. .+..+..+...
T Consensus 43 ~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~ 117 (276)
T 3no2_A 43 AATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTEFE 117 (276)
T ss_dssp EECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEEEC
T ss_pred EECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEecc
Confidence 57899998883 4678999998 78888888764 357888999999999998876 777777765 34555444320
Q ss_pred -----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 80 -----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 80 -----~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+......+ ..++|+++++...++.|..||.. |+.+..+... . .+.++...++++.+++++.++.|..+|..
T Consensus 118 ~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 118 TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-G-TPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-S-CCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-C-CccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 11123334 68899999999999999999987 9999888765 3 46678889999999998888889999988
Q ss_pred Cccc
Q 028806 154 DILK 157 (203)
Q Consensus 154 ~~~~ 157 (203)
+++.
T Consensus 195 tG~~ 198 (276)
T 3no2_A 195 SNRI 198 (276)
T ss_dssp TCCE
T ss_pred CCcE
Confidence 7665
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-11 Score=90.12 Aligned_cols=147 Identities=10% Similarity=0.014 Sum_probs=104.7
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~- 78 (203)
++|+|+++ +++++..++.|.+|+..++ ...+..+...+.+++++|+++++++...++.|.+||..+ +........
T Consensus 33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~ 109 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESIADSF 109 (296)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEEECEE
T ss_pred CeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEEeecc
Confidence 46899998 7788888899999999887 455555667799999999999888877778999999853 232222111
Q ss_pred --cCCCceeEE-EeeCCCEEEE----Ec-------------CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE
Q 028806 79 --LSPNSVDAL-LKLDEDRVIT----GS-------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 79 --~~~~~v~~~-~~~~~~~l~~----~~-------------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
.....+..+ ++|+|+++++ ++ ..+.|..++.. ++.. .+..+.. ....++|+|+++.|
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~-~~~gi~~s~dg~~l 186 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDRV-KPNGLAFLPSGNLL 186 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCCS-SEEEEEECTTSCEE
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCCC-CCccEEECCCCCEE
Confidence 011234567 8999998887 33 13456666654 4433 3333323 57899999999988
Q ss_pred EEEeCCCcEEEEeCC
Q 028806 139 GSISHDSMLKLWDLD 153 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~ 153 (203)
++.+.++.|.+|++.
T Consensus 187 v~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 187 VSDTGDNATHRYCLN 201 (296)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEeCCCCeEEEEEEC
Confidence 766678899999986
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-11 Score=89.36 Aligned_cols=154 Identities=6% Similarity=-0.067 Sum_probs=108.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+++|+|+++++...++.|.+|+..+.............+.+++++++++++++...++.|.+|+.... ........ .
T Consensus 113 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~-~ 190 (270)
T 1rwi_B 113 LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFT-D 190 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCS-S
T ss_pred eEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-ceEeeccc-C
Confidence 467888987777777889999976654433322233345788999999997777777889999998632 22222222 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCccc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
...+..+ ++++|.++++...++.|.+|+............+. ..+.+++++|+|+.+++...++.|+++++...+.
T Consensus 191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGL-NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSC-SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCC-CCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 3556777 78999777777778899999986544333222221 2588999999999888888899999999865543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-11 Score=92.71 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=93.2
Q ss_pred CcccccCCEEEEEcCC---C--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC-----------------
Q 028806 1 MTFAADAMKLLGTSGD---G--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----------------- 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------- 58 (203)
++|||+|++|++++.+ + .|++|++.+++.......+ . +..++|+|+++.|+.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 3699999999887643 2 4888888888765544333 3 8999999999988887632
Q ss_pred ----------CeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCC-------cEEEEEccCCceeeeecc
Q 028806 59 ----------GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG-------LISLVGILPNRIIQPIAE 120 (203)
Q Consensus 59 ----------~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~ 120 (203)
..|++||+.. +..+..+.. . .+..+ |+|+| +++++..+. ...||.+.+++.. .+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~-~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTES-EEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFE 215 (347)
T ss_dssp --------CEEEEEEEETTT-TEEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEE
T ss_pred cCcccccCccceEEEEECCC-CeEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-Eecc
Confidence 5688899864 333244544 2 56677 89999 777765432 3445544455443 3333
Q ss_pred CCCCceEEEEEeCCCCeEEEEeCC--------CcEEEEe
Q 028806 121 HSEYPIESLALSHDRKFLGSISHD--------SMLKLWD 151 (203)
Q Consensus 121 ~~~~~i~~i~~~~~~~~l~~~~~d--------~~i~iwd 151 (203)
+ . .+..+ +|+|++|+.++.+ ..|.+||
T Consensus 216 ~-~-~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 216 K-V-SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp E-E-SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred C-c-ceeeE--CCCCCEEEEEEccccCCccccceEEEEC
Confidence 3 2 45544 9999998877744 3688888
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.1e-11 Score=89.15 Aligned_cols=150 Identities=10% Similarity=-0.002 Sum_probs=106.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc-----cceEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-----EELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~ 73 (203)
|+++|+++.+++...++.|.+||..+++....+.... .....+++ . +..|++++ .++.|.++|+.+ +...
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t-~~~~ 165 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTET-DKVV 165 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTT-TEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCC-CeEE
Confidence 4677888555555478999999999998876665332 14556777 4 44555444 488999999975 4455
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEEcCC----------CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITGSEN----------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..+.. .. ....+ ++|+|++++++..+ +.|.++|..+++....+..........++|+|++++|+++.
T Consensus 166 ~~i~~-g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 166 DELTI-GI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEEEC-SS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred EEEEc-CC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 55553 33 33455 79999877766554 78999999988877666543222578999999999988776
Q ss_pred CCCcEEEEeCCCccc
Q 028806 143 HDSMLKLWDLDDILK 157 (203)
Q Consensus 143 ~d~~i~iwd~~~~~~ 157 (203)
. .|.+||+.++..
T Consensus 244 ~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 244 N--DIWRMPVEADRV 256 (328)
T ss_dssp S--SEEEEETTCSSC
T ss_pred c--EEEEEECCCCce
Confidence 4 899999987664
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.37 E-value=9.2e-11 Score=85.21 Aligned_cols=152 Identities=7% Similarity=-0.034 Sum_probs=105.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+++|+++++++.. ++.|.+|+..+.............+..+++.++++++++...++.|.+|+.... ........ .
T Consensus 72 i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~-~ 148 (270)
T 1rwi_B 72 LAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK-TQTVLPFT-G 148 (270)
T ss_dssp EEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC-SCEECCCC-S
T ss_pred eEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc-eeEeeccc-c
Confidence 46788888666666 889999998765443222223356889999999998887777889999976432 11111112 2
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
...+..+ ++++|+++++...++.|.+|+............+.. .+..++++++|..+++...++.|.+|+..+..
T Consensus 149 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCC-CceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 3356677 789998777777788999999876655433333322 68899999999776666678899999986643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-11 Score=91.32 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=105.2
Q ss_pred ccCCEEEEEc------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC----------CCeEEEEEcCC
Q 028806 5 ADAMKLLGTS------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----------SGTVLLYSWGY 68 (203)
Q Consensus 5 p~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~~wd~~~ 68 (203)
++++++++.. .|+.|.+||..+++.+..+..+..+ .++|+|+++++++++. ++.|.+||+.+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3667666653 3679999999999888888766554 8999999999998862 56799999874
Q ss_pred ccccceeeeccC------CCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeee-eccCCCCceEEEEEeCCC-Ce
Q 028806 69 FKDCSDRFVGLS------PNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDR-KF 137 (203)
Q Consensus 69 ~~~~~~~~~~~~------~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~-~~ 137 (203)
.+.+..+.. . ......+ ++|+|+++++++. ++.|.+||+.+++.+.. +... . ...+.+.|++ ..
T Consensus 91 -~~~~~~i~~-~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~--~~~v~~~p~~~~~ 165 (361)
T 2oiz_A 91 -LTFEKEISL-PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G--CWSVIPQPNRPRS 165 (361)
T ss_dssp -CCEEEEEEE-CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T--EEEEEECTTSSSE
T ss_pred -CcEEEEEEc-CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C--cceeEEcCCCCee
Confidence 345555442 2 1234556 8999999999874 57899999999988877 6543 2 3445667765 56
Q ss_pred EEEEeCCCcEEEEeCCC
Q 028806 138 LGSISHDSMLKLWDLDD 154 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~ 154 (203)
+++.+.||.+.+|++..
T Consensus 166 ~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 166 FMTICGDGGLLTINLGE 182 (361)
T ss_dssp EEEEETTSSEEEEEECT
T ss_pred EEEECCCCcEEEEEECC
Confidence 67777888888887754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-11 Score=89.88 Aligned_cols=150 Identities=11% Similarity=0.069 Sum_probs=108.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|++..++..+.++.++.| .+.....+..+...+.+++|+|++++++++..++.|.+||... +........ +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~~-~ 85 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFVS-H 85 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEEC-S
T ss_pred eeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEEeeC-C
Confidence 5688888887777778889999 3455556666667789999999999888888899999999864 333332324 5
Q ss_pred CCceeEE-EeeCCCEEEEEcCC----CcEEEEEccCCceeeeecc-CCCCceEEEEEeCCCCeEEEEeC------CCcEE
Q 028806 81 PNSVDAL-LKLDEDRVITGSEN----GLISLVGILPNRIIQPIAE-HSEYPIESLALSHDRKFLGSISH------DSMLK 148 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~------d~~i~ 148 (203)
...+.++ ++|+++++++...+ +.|.+||..++.....+.. .....+..++++|+++++++... .+.|.
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~ 165 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY 165 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence 5678888 89999888777666 6899999887765433321 11236899999999987776553 35677
Q ss_pred EEeCCCc
Q 028806 149 LWDLDDI 155 (203)
Q Consensus 149 iwd~~~~ 155 (203)
.++..+.
T Consensus 166 ~~~~~~~ 172 (333)
T 2dg1_A 166 YVSPDFR 172 (333)
T ss_dssp EECTTSC
T ss_pred EEeCCCC
Confidence 7776543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=101.29 Aligned_cols=150 Identities=12% Similarity=0.086 Sum_probs=99.8
Q ss_pred cccccCCEEEEEcCC-----CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCe--------------EE
Q 028806 2 TFAADAMKLLGTSGD-----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT--------------VL 62 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------i~ 62 (203)
+|||||++|+.+..+ ..|++||+.+++.+... .+...+..++|+|| +.|+.+..+.. |+
T Consensus 169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence 699999999887543 46999999998765431 12222357899999 88888776543 88
Q ss_pred EEEcCCcccc-ceeeecc-CCCceeEE-EeeCCCEEEEEcCCC-----cEEEEEccCC--ceeeeeccCCCCceEEEEEe
Q 028806 63 LYSWGYFKDC-SDRFVGL-SPNSVDAL-LKLDEDRVITGSENG-----LISLVGILPN--RIIQPIAEHSEYPIESLALS 132 (203)
Q Consensus 63 ~wd~~~~~~~-~~~~~~~-~~~~v~~~-~~~~~~~l~~~~~d~-----~i~~~d~~~~--~~~~~~~~~~~~~i~~i~~~ 132 (203)
+|++.+.... ...+... +...+..+ |+|+|++|+..+.++ .|++||+.++ +....+..+.. .+... ++
T Consensus 247 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~-~~ 324 (741)
T 1yr2_A 247 LHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK-AQWDF-VD 324 (741)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS-SCEEE-EE
T ss_pred EEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC-ceEEE-Ee
Confidence 9998643221 1122220 12236667 899999998877543 7999999877 41344444433 34444 35
Q ss_pred CCCCeEEEEeC----CCcEEEEeCCCc
Q 028806 133 HDRKFLGSISH----DSMLKLWDLDDI 155 (203)
Q Consensus 133 ~~~~~l~~~~~----d~~i~iwd~~~~ 155 (203)
|++..|+..+. .+.|.+|++.++
T Consensus 325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 325 GVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 88988887775 345999998774
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-11 Score=92.54 Aligned_cols=128 Identities=10% Similarity=0.071 Sum_probs=96.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+| ++++|+++ .++.|++|++.+.........+...+.++.+.+. .+++++.||.|.+||+... ... . .
T Consensus 93 l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~-~~~-~----~ 161 (388)
T 1xip_A 93 VCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-STK-Q----L 161 (388)
T ss_dssp EEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-CEE-E----E
T ss_pred EEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCC-ccc-c----c
Confidence 356 88899998 7799999999865444445556667888777654 3888899999999999742 322 1 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce--eeee------c---cCCCCceEEEEEeCCCCeEEEEe
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPI------A---EHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~------~---~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
...|+++ |+|+| ++.|..||.+++|+...+.. ..++ . .| ...|.++.|.+++.++++-.
T Consensus 162 ~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 162 AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEEE
T ss_pred cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEEEc
Confidence 4578899 99999 67899999999999887765 4455 2 24 34899999999999887643
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-10 Score=84.31 Aligned_cols=149 Identities=8% Similarity=0.014 Sum_probs=103.3
Q ss_pred CcccccCCEEEE----Ec-------------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEE
Q 028806 1 MTFAADAMKLLG----TS-------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLL 63 (203)
Q Consensus 1 l~~sp~~~~l~~----~~-------------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 63 (203)
++++|+|+++++ ++ ..+.|..++.. +.. ..+..+......++|+|+++.+++.+.++.|++
T Consensus 120 i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~ 197 (296)
T 3e5z_A 120 VCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHR 197 (296)
T ss_dssp EEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEE
Confidence 467899998887 32 13456666655 443 333445566789999999998877777899999
Q ss_pred EEcCCcccc---ceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEE-eCCCCeE
Q 028806 64 YSWGYFKDC---SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL-SHDRKFL 138 (203)
Q Consensus 64 wd~~~~~~~---~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~-~~~~~~l 138 (203)
|++...+.. ...+.. ....+..+ ++++|+++++. ++.|.+|+.. ++.+..+..+.. +.+++| .|+++.|
T Consensus 198 ~~~~~~g~~~~~~~~~~~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 198 YCLNARGETEYQGVHFTV-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTL 271 (296)
T ss_dssp EEECSSSCEEEEEEEECC-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEE
T ss_pred EEECCCCcCcCCCeEeeC-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEE
Confidence 998632332 223322 34455677 89999876665 7789999986 777777776633 788999 5898988
Q ss_pred EEEeCCCcEEEEeCCCcccC
Q 028806 139 GSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~~ 158 (203)
++++.+ .+..++..+...+
T Consensus 272 ~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 272 YMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEEETT-EEEEEECSCCBCC
T ss_pred EEEcCC-eEEEEEccccccc
Confidence 888865 4666666665544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-10 Score=86.28 Aligned_cols=156 Identities=12% Similarity=0.016 Sum_probs=108.4
Q ss_pred CcccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCC-------ccceEEEEEeeCCCEEEEecC--CCeE
Q 028806 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS-------EEELTSVVLMKNGRKVVCGSQ--SGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i 61 (203)
+++||||++|+++. .++.|.+||..+.+.+..+... ......++|+|+|++|++++. ++.|
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v 150 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV 150 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence 57999999998875 3678999999988777665432 123457899999999998874 4789
Q ss_pred EEEEcCCcccccee-eec-------------------------------------------------cCC----------
Q 028806 62 LLYSWGYFKDCSDR-FVG-------------------------------------------------LSP---------- 81 (203)
Q Consensus 62 ~~wd~~~~~~~~~~-~~~-------------------------------------------------~~~---------- 81 (203)
.++| .+. ..+.. +.. .+.
T Consensus 151 ~viD-~t~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 228 (373)
T 2mad_H 151 GLVV-QGG-SSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV 228 (373)
T ss_pred EEEE-CCC-CEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEE
Confidence 9998 642 22222 100 000
Q ss_pred --------------------------------------CceeEE-EeeCCCEEEEEcC----------CCcEEEEEccCC
Q 028806 82 --------------------------------------NSVDAL-LKLDEDRVITGSE----------NGLISLVGILPN 112 (203)
Q Consensus 82 --------------------------------------~~v~~~-~~~~~~~l~~~~~----------d~~i~~~d~~~~ 112 (203)
.....+ ++|+++.++++.. .+.|.++|+.++
T Consensus 229 ~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~ 308 (373)
T 2mad_H 229 WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG 308 (373)
T ss_pred EEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC
Confidence 000013 4556666666543 346999999999
Q ss_pred ceeeeeccCCCCceEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCcccCCC
Q 028806 113 RIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 113 ~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~~ 160 (203)
+.+..+... . ...+++|+|||+ .++++. .++.|.++|+.+++....
T Consensus 309 ~vv~~i~~g-~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 309 QTSSQISLG-H-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEEEECC-C-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 988888654 2 478999999999 677776 589999999998876543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-10 Score=95.06 Aligned_cols=148 Identities=9% Similarity=0.000 Sum_probs=101.9
Q ss_pred CcccccCCEEEEEcCCCe-------------EEEEEcCCCe----EEEeecCCccceEEEEEeeCCCEEEEecCCC----
Q 028806 1 MTFAADAMKLLGTSGDGT-------------LSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQSG---- 59 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~-------------i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---- 59 (203)
++|+|||+.|++++.+.. |++|++.++. ++.....+...+..+.|+|+|++|+.++.++
T Consensus 173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN 252 (695)
T ss_dssp CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence 579999999999888766 9999998764 4444444556788999999999888776555
Q ss_pred eEEEEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcC----CCcEEEEEccCCce---eeeeccCCCCceEEEEEe
Q 028806 60 TVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGILPNRI---IQPIAEHSEYPIESLALS 132 (203)
Q Consensus 60 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~---~~~~~~~~~~~i~~i~~~ 132 (203)
.|++|+.. ......+.. +...+...+.++|. ++..+. ++.|.+|++.++.. ...+..+....+..++|+
T Consensus 253 ~l~~~~~~--~~~~~~l~~-~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 253 DVYWKRPG--EKDFRLLVK-GVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp EEEEECTT--CSSCEEEEE-CSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred EEEEEcCC--CCceEEeec-CCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence 56666543 234455555 55555555347777 554443 57899999987653 333333323357888888
Q ss_pred CCCCeEEEEeCCCcEEEEeCC
Q 028806 133 HDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 133 ~~~~~l~~~~~d~~i~iwd~~ 153 (203)
++.++++...|+..++|.+.
T Consensus 329 -~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 329 -GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp -TTEEEEEEEETTEEEEEEEE
T ss_pred -CCEEEEEEEECCEEEEEEEe
Confidence 66778888888887777554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-09 Score=77.93 Aligned_cols=150 Identities=8% Similarity=-0.033 Sum_probs=104.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeecc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGL 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~ 79 (203)
|+++++|.++++...++.|..|+.........+......+..+++.+++.++++...++.|.+||.. +.... ....
T Consensus 62 i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~- 138 (299)
T 2z2n_A 62 LTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD--GKIREYELPN- 138 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEEECSS-
T ss_pred EEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC--CCEEEecCCC-
Confidence 3567888888887778899999976332222222344578899999999888887778899999873 22221 1222
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
....+..+ +.+++.++++....+.|..|+. +++.... +... ...+..++++++++++++...++.|.+|+. ++.
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP-ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC-CCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 33456777 7889988777777788999998 6665432 2222 225789999999987666666788999998 443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-09 Score=84.91 Aligned_cols=152 Identities=11% Similarity=0.065 Sum_probs=105.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcC--CCeEEEeecCCccceEEEEEe----eCCCEEEEecC-CCeEEEEEcCCccccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLR--KNTVQTRSEFSEEELTSVVLM----KNGRKVVCGSQ-SGTVLLYSWGYFKDCS 73 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~~wd~~~~~~~~ 73 (203)
++|||+|+++++++.++.|.+||+. +++.+..+... .....++|+ |+|+++++++. .+++.++|..+. +.+
T Consensus 202 v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~ 279 (567)
T 1qks_A 202 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPK 279 (567)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEE
T ss_pred eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC-cEE
Confidence 4689999999999999999999995 77777777653 346799999 69999888775 589999997542 222
Q ss_pred eeeecc---------------------C---------------------------------CCceeEE-EeeCCCEEEEE
Q 028806 74 DRFVGL---------------------S---------------------------------PNSVDAL-LKLDEDRVITG 98 (203)
Q Consensus 74 ~~~~~~---------------------~---------------------------------~~~v~~~-~~~~~~~l~~~ 98 (203)
..+... + ......+ |+|++++++++
T Consensus 280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va 359 (567)
T 1qks_A 280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA 359 (567)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE
Confidence 222100 0 0012245 78999998776
Q ss_pred c-CCCcEEEEEccCCceeeeecc-CCC-CceEEEE-EeCCCCeEE-EEe-CCCcEEEEeCCC
Q 028806 99 S-ENGLISLVGILPNRIIQPIAE-HSE-YPIESLA-LSHDRKFLG-SIS-HDSMLKLWDLDD 154 (203)
Q Consensus 99 ~-~d~~i~~~d~~~~~~~~~~~~-~~~-~~i~~i~-~~~~~~~l~-~~~-~d~~i~iwd~~~ 154 (203)
+ .++.|.++|+.+++.+..+.. ... .+-..+. ++|++..++ +.. .++.|.++|..+
T Consensus 360 ~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 360 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred eCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 6 478899999999988776654 211 0111222 588755444 443 468999999887
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.22 E-value=7.2e-10 Score=82.17 Aligned_cols=150 Identities=8% Similarity=0.072 Sum_probs=102.6
Q ss_pred CcccccCCEEEEEcCC---------------CeEEEEEcCCCeEEEeecCCccceEEEEEe----eCCCEEEEe-cCCCe
Q 028806 1 MTFAADAMKLLGTSGD---------------GTLSVCNLRKNTVQTRSEFSEEELTSVVLM----KNGRKVVCG-SQSGT 60 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~ 60 (203)
|+++|+|+++++...+ +.|..|+.. ++..... .+......++|+ |+++.++.+ ..++.
T Consensus 122 i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~ 199 (314)
T 1pjx_A 122 CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKK 199 (314)
T ss_dssp EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred EEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence 3577888877776554 567777765 5443322 233456789999 998765544 56789
Q ss_pred EEEEEcCCccc-----cceeeeccCC-CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeC
Q 028806 61 VLLYSWGYFKD-----CSDRFVGLSP-NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 61 i~~wd~~~~~~-----~~~~~~~~~~-~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~ 133 (203)
|.+|++...+. ....+.. +. ..+..+ ++++|+++++...++.|.+||..+++.+..+..+.. .+.+++++|
T Consensus 200 i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~ 277 (314)
T 1pjx_A 200 LWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKP 277 (314)
T ss_dssp EEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-CEEEEEECT
T ss_pred EEEEECCCCCccccceEEEECCC-CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC-CceeEEECC
Confidence 99999752122 1122222 22 446667 799998888877788999999887776666655533 689999999
Q ss_pred CCCeEEEEe-CCCcEEEEeCCC
Q 028806 134 DRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 134 ~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
++++|++++ .++.|..|++..
T Consensus 278 dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 278 QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEeCCCCeEEEEeCCC
Confidence 999665554 567899999864
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-09 Score=89.80 Aligned_cols=148 Identities=15% Similarity=0.069 Sum_probs=100.8
Q ss_pred CcccccCCEEEEEcCCCe--------------EEEEEcCCCe----EEEeecCCccceEEEEEeeCCCEEEEecCC----
Q 028806 1 MTFAADAMKLLGTSGDGT--------------LSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCGSQS---- 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~--------------i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 58 (203)
++|+|| +.|++++.++. |++|++.++. .+.....+...+..+.|+|+|++|+..+.+
T Consensus 214 ~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 292 (741)
T 1yr2_A 214 LAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDP 292 (741)
T ss_dssp CEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCS
T ss_pred EEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCC
Confidence 479999 99888876543 8899987654 333333333458899999999988876644
Q ss_pred -CeEEEEEcCCcccc-ceeeeccCCCceeEEEeeCCCEEEEEcC----CCcEEEEEccCC--ceeeeeccCCCCceEEEE
Q 028806 59 -GTVLLYSWGYFKDC-SDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGILPN--RIIQPIAEHSEYPIESLA 130 (203)
Q Consensus 59 -~~i~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~i~~~d~~~~--~~~~~~~~~~~~~i~~i~ 130 (203)
..|++||+...... ...+.. +.......++|+|..|+..+. .+.|.+|++.++ .....+..+ ...+..+.
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~ 370 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIP-DLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVG 370 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEE
T ss_pred cceEEEEECCCCCCcccEEecC-CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEE
Confidence 38999998643113 455655 555555555699999888775 345999998874 334444444 33566777
Q ss_pred EeCCCCeEEEEeCCCcEEEEeC
Q 028806 131 LSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 131 ~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
|+ ++.++++...++..+||.+
T Consensus 371 ~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 371 IA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp EE-BTEEEEEEEETTEEEEEEE
T ss_pred EE-CCEEEEEEEECCEEEEEEE
Confidence 77 5567777778887766654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-09 Score=76.90 Aligned_cols=147 Identities=5% Similarity=-0.060 Sum_probs=103.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee-eec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR-FVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~ 78 (203)
|++.|+++++++...++.|.+|+. ++.... ........+..+++.++++.+++....+.|.+||. . +..... +..
T Consensus 104 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~ 180 (299)
T 2z2n_A 104 ITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITEFKIPT 180 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEEEECSS
T ss_pred eEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEEeeCCC
Confidence 356788888888777889999998 554432 23334456899999999988887777789999997 3 333221 222
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
....+..+ +++++.++++....+.|.+|+. ++..... +..+ ...+.+++++++|+.+++...++.|.+||..
T Consensus 181 -~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 181 -PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTP-NARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp -TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred -CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCC-CCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 33456677 7889887777667888999998 6654332 2222 2368899999999866665577899999973
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-09 Score=81.35 Aligned_cols=145 Identities=7% Similarity=0.003 Sum_probs=103.7
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC-----
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP----- 81 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~----- 81 (203)
++++++...++.|.+||..+++.+..+.. ......++++++++.+++...++.|.+||..+ ......+.. ..
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~-g~~~~~~ 130 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYIEC-PDMDMES 130 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEEEC-TTCCTTT
T ss_pred CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEEEc-CCccccC
Confidence 44555666679999999999988887753 45688999999985444444789999999874 344444443 22
Q ss_pred CceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC----------CcEE
Q 028806 82 NSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD----------SMLK 148 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----------~~i~ 148 (203)
.....+ + ++..+++++ .++.|.++|+.+++.+..+.... ....+.++|+|++++++..+ +.|.
T Consensus 131 ~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~--~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~ 206 (328)
T 3dsm_A 131 GSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI--QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLY 206 (328)
T ss_dssp CBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS--CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred CCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC--CccceEEcCCCCEEEEECCCccCCccccCCceEE
Confidence 134455 4 455555554 47899999999998887776542 35688999999877766554 7899
Q ss_pred EEeCCCcccC
Q 028806 149 LWDLDDILKG 158 (203)
Q Consensus 149 iwd~~~~~~~ 158 (203)
++|..++...
T Consensus 207 ~id~~t~~v~ 216 (328)
T 3dsm_A 207 RIDAETFTVE 216 (328)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999876543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-09 Score=83.63 Aligned_cols=150 Identities=14% Similarity=0.030 Sum_probs=101.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceee--
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRF-- 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~-- 76 (203)
|+|+|+++++++...++.|++|+..++.......... ... ++|+|+++.|+++..++ .|.+|+.... .....+
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~-~~~~~~g~ 212 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG-WAPTRIGQ 212 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT-TCEEEEEE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCC-ceeEEeee
Confidence 5788999987887778999999999887655544432 233 99999999988888765 7888887532 222233
Q ss_pred --eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee----eccCCCCc-eEEEEEeCC-CCeEEEEeCCCcE
Q 028806 77 --VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP----IAEHSEYP-IESLALSHD-RKFLGSISHDSML 147 (203)
Q Consensus 77 --~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~~-i~~i~~~~~-~~~l~~~~~d~~i 147 (203)
.. ....+.++ ++|++..|+++..++.|+.||+.++..... ........ ...++|+|+ +.++++-...+.|
T Consensus 213 ~~~~-~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I 291 (409)
T 3hrp_A 213 LGST-FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV 291 (409)
T ss_dssp CCTT-SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccch-hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE
Confidence 21 22345666 889656666677788999999887654322 22221211 128999995 5555555577889
Q ss_pred EEEeCCC
Q 028806 148 KLWDLDD 154 (203)
Q Consensus 148 ~iwd~~~ 154 (203)
+.|+...
T Consensus 292 ~~~~~~g 298 (409)
T 3hrp_A 292 YKITPDG 298 (409)
T ss_dssp EEECTTC
T ss_pred EEEecCC
Confidence 9998764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-09 Score=82.75 Aligned_cols=144 Identities=10% Similarity=-0.067 Sum_probs=103.8
Q ss_pred ccccCCEEEEEcC-----CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec----------CCCeEEEEEcC
Q 028806 3 FAADAMKLLGTSG-----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWG 67 (203)
Q Consensus 3 ~sp~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~wd~~ 67 (203)
..|+++.+++... ++.|.++|..+++.+..+.....+ . ++++|+++++++++ .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4688988877754 679999999999998888755555 4 99999999888775 35789999997
Q ss_pred CccccceeeeccCC-------CceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe
Q 028806 68 YFKDCSDRFVGLSP-------NSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 68 ~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 137 (203)
+ ...+..+.. .. .....+ ++|+|+++++++. ++.|.++|+.+++.+.++... . + ...+....+.
T Consensus 118 t-~~v~~~I~v-~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g--~-~~~~P~g~~~ 191 (386)
T 3sjl_D 118 T-LLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D--C-YHIFPTAPDT 191 (386)
T ss_dssp T-CCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S--E-EEEEEEETTE
T ss_pred C-CeEEEEEEC-CCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C--c-ceeecCCCce
Confidence 5 455555532 21 134456 8999999998874 688999999999999888653 2 1 1223223345
Q ss_pred EEEEeCCCcEEEEeCCC
Q 028806 138 LGSISHDSMLKLWDLDD 154 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~ 154 (203)
+++.+.||.+.+.++.+
T Consensus 192 ~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEEETTSCEEEEECCS
T ss_pred eEEECCCCCEEEEECCC
Confidence 55666677777777654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.3e-12 Score=96.56 Aligned_cols=144 Identities=11% Similarity=0.097 Sum_probs=81.1
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC-ce
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN-SV 84 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~v 84 (203)
++..|++++.|+.|+.||..+|+.+..+.. ..+.+..+..++..+++++.|+.|+.||..+ ++.+..+.. +.. .+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~-~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPF-TIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSC-CHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-Cceeeeeec-cCcccc
Confidence 567899999999999999999999888765 4455555566777888888999999999865 344333322 211 11
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+. +...+..+++++.++.|+.||..+|+.+..+..+. ...++|++..|++++.++.|+.||.+++...
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 111 11134567788889999999999999987776552 1345678888999999999999999988654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-09 Score=90.38 Aligned_cols=151 Identities=9% Similarity=0.082 Sum_probs=96.9
Q ss_pred cccccCCEEEEEc-----CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCC-------------eEEE
Q 028806 2 TFAADAMKLLGTS-----GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG-------------TVLL 63 (203)
Q Consensus 2 ~~sp~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------~i~~ 63 (203)
+|||||++||.+. ....|++||+.+++.+... .+......++|+ |++.|+.+..+. .|++
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence 6999999988642 2357999999998765431 111123568999 999988887663 4999
Q ss_pred EEcCCccccceeeeccCCC----ceeEE-EeeCCCEEEEEcC----CCcEEEEEccCCc-eeeeeccCCCCceEEEEEeC
Q 028806 64 YSWGYFKDCSDRFVGLSPN----SVDAL-LKLDEDRVITGSE----NGLISLVGILPNR-IIQPIAEHSEYPIESLALSH 133 (203)
Q Consensus 64 wd~~~~~~~~~~~~~~~~~----~v~~~-~~~~~~~l~~~~~----d~~i~~~d~~~~~-~~~~~~~~~~~~i~~i~~~~ 133 (203)
|++.+....-..+.. ... ....+ ++|+|++|+.... ...|+++|+.++. ....+..+.. ..... |++
T Consensus 213 ~~lgt~~~~~~~v~~-~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~-~~~~~-~~~ 289 (693)
T 3iuj_A 213 HRLGTAQEDDRLVFG-AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD-ADVSL-VDN 289 (693)
T ss_dssp EETTSCGGGCEEEES-CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS-SCEEE-EEE
T ss_pred EECCCCcccceEEEe-cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC-ceEEE-Eec
Confidence 998754322222222 222 24556 8999998875443 3579999987763 3444544433 34444 667
Q ss_pred CCCeEEEEe-C---CCcEEEEeCCCccc
Q 028806 134 DRKFLGSIS-H---DSMLKLWDLDDILK 157 (203)
Q Consensus 134 ~~~~l~~~~-~---d~~i~iwd~~~~~~ 157 (203)
++..|+..+ . .+.|.++++.++..
T Consensus 290 ~g~~l~~~t~~~~~~~~l~~~d~~~~~~ 317 (693)
T 3iuj_A 290 KGSTLYLLTNRDAPNRRLVTVDAANPGP 317 (693)
T ss_dssp ETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 666655444 3 35799999987643
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-08 Score=72.96 Aligned_cols=147 Identities=8% Similarity=0.027 Sum_probs=103.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG- 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~- 78 (203)
|+++++|+++++...++.|.+|+.. ++... .+......+..+++.+++.++++...++.|..||.. +.. ..+..
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~-~~~~~~ 100 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGF-TEYPLP 100 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECS
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CCe-EEecCC
Confidence 3567888888877778999999988 54433 223334678999999999888877778889999875 232 22221
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee-eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.....+..+ +.+++.++++...++.|..++.. ++... .+... ...+..+++.++++.+++...++.|..|+..
T Consensus 101 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 175 (300)
T 2qc5_A 101 QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK-GSYPAFITLGSDNALWFTENQNNSIGRITNT 175 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCC-CCCceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 023456777 78899888877778889999987 55442 22222 2368899999999866665567889999873
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.5e-09 Score=78.04 Aligned_cols=145 Identities=13% Similarity=0.019 Sum_probs=99.9
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 78 (203)
+|+|+++ ++++...++.|..|+. ++.. ..+..+...+..++++++++++++...++.|.+|+.. +.. ..+..
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~-~~~~~~~ 125 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQA-HLLVGRY 125 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECEE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--CCE-EEEEecc
Confidence 6899998 5677777899999998 4443 3344455678999999999977776667889999874 232 22211
Q ss_pred --cCCCceeEE-EeeCCCEEEE----EcC-------------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE
Q 028806 79 --LSPNSVDAL-LKLDEDRVIT----GSE-------------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 79 --~~~~~v~~~-~~~~~~~l~~----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
.....+..+ +.|+|.++++ +.. .+.|..|+..+++..... .. . ....++|+|+++.|
T Consensus 126 ~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~-~-~p~gl~~spdg~~l 202 (305)
T 3dr2_A 126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL-D-HPNGLAFSPDEQTL 202 (305)
T ss_dssp TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE-S-SEEEEEECTTSSEE
T ss_pred CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC-C-CCcceEEcCCCCEE
Confidence 011235567 8999998876 332 245777887666654433 22 3 46789999999988
Q ss_pred EEEeCC------CcEEEEeCCC
Q 028806 139 GSISHD------SMLKLWDLDD 154 (203)
Q Consensus 139 ~~~~~d------~~i~iwd~~~ 154 (203)
+.+... +.|.+|++..
T Consensus 203 yv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 203 YVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp EEEECCC---CCCEEEEEEEET
T ss_pred EEEecCCcCCCCCEEEEEEecC
Confidence 877654 6899999864
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-08 Score=76.83 Aligned_cols=143 Identities=8% Similarity=-0.131 Sum_probs=101.7
Q ss_pred cccCCEEEEEcC--CC---eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec----------CCCeEEEEEcCC
Q 028806 4 AADAMKLLGTSG--DG---TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGY 68 (203)
Q Consensus 4 sp~~~~l~~~~~--d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~wd~~~ 68 (203)
.|+++++++... .. +|.+||..+++.+..+.....+ .++++|++++++++. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 467777766653 23 8899999999988887754443 899999999999886 367899999864
Q ss_pred ccccceeeeccC-------CCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeee-eccCCCCceEEEEEeCCC-C
Q 028806 69 FKDCSDRFVGLS-------PNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDR-K 136 (203)
Q Consensus 69 ~~~~~~~~~~~~-------~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~-~ 136 (203)
...+..+.. . ......+ ++|+|++|++++. ++.|.++| .+++.+.. +... . ++.+.|++ +
T Consensus 107 -~~~~~~i~~-~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~----~~~~~~~~~~ 178 (373)
T 2mad_H 107 -FLPIADIEL-PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T----CYHIHPGAPS 178 (373)
T ss_pred -CcEEEEEEC-CCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c----eEEEEeCCCc
Confidence 344444332 1 1223456 8999999999874 47899999 99988877 6543 2 24455655 4
Q ss_pred eEEEEeCCCcEEEEeCCCccc
Q 028806 137 FLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.+++.+.||.+.+++. ++..
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~~ 198 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGGA 198 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCcE
Confidence 4556667888999988 5543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-08 Score=72.38 Aligned_cols=146 Identities=6% Similarity=-0.040 Sum_probs=101.6
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEE-EeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce-eeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQ-TRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD-RFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~ 79 (203)
+++++++++++...++.|.+|+.. ++.. ..+......+..+++.++++++++...++.|..|+.. +.... .+..
T Consensus 68 ~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~- 143 (300)
T 2qc5_A 68 IVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIYEYDLPN- 143 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEEEEECSS-
T ss_pred EECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEEEccCCC-
Confidence 567888877777777889999987 5443 2223234668999999999988887778889999875 23221 1222
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeee-eccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQP-IAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
....+..+ +.++++++++....+.|..++. +++.... .... ...+..++++++++.+++....+.|.+|+..
T Consensus 144 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 144 KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTN-AAAPVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCC-CCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 23456777 7899997666666788999998 5554432 2222 2258899999999776666567789999973
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-09 Score=78.15 Aligned_cols=139 Identities=8% Similarity=0.014 Sum_probs=90.8
Q ss_pred CcccccCCEEEEEcCC---------CeEEEEEcCC-CeEEEeecCCccceEEEEEeeCCCEEEE-ecCCCeEEEEEcC-C
Q 028806 1 MTFAADAMKLLGTSGD---------GTLSVCNLRK-NTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWG-Y 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d---------~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~-~ 68 (203)
++++|+|+++++.... ....||.+.. +.... +.........++|+|+++.|+. .+.++.|.+|++. .
T Consensus 103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~ 181 (297)
T 3g4e_A 103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ 181 (297)
T ss_dssp EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT
T ss_pred EEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCC
Confidence 3578889876654221 2234444432 33322 2223345688999999987654 4557899999974 2
Q ss_pred cccc-----ceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEe-CCCCeEEEE
Q 028806 69 FKDC-----SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (203)
Q Consensus 69 ~~~~-----~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~ 141 (203)
.+.. ...+.. ....+..+ +.++|++.++....+.|.+||..+++.+..+..+.. .+++++|. |+++.|+.+
T Consensus 182 ~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 182 TGQISNRRSVYKLEK-EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp TCCEEEEEEEEECCG-GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEE
T ss_pred CCcccCcEEEEECCC-CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEE
Confidence 2221 111222 23456677 789998777777778899999988998888877644 68999998 888876655
Q ss_pred e
Q 028806 142 S 142 (203)
Q Consensus 142 ~ 142 (203)
+
T Consensus 260 ~ 260 (297)
T 3g4e_A 260 C 260 (297)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-08 Score=84.36 Aligned_cols=151 Identities=7% Similarity=0.035 Sum_probs=102.7
Q ss_pred CcccccCCEEEEEcCCC-------------eEEEEEcCCCe----EEEeecC-CccceEEEEEeeCCCEEEEecC----C
Q 028806 1 MTFAADAMKLLGTSGDG-------------TLSVCNLRKNT----VQTRSEF-SEEELTSVVLMKNGRKVVCGSQ----S 58 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~-------------~i~vw~~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----d 58 (203)
++|+ |++.|+.++.+. .|++|++.++. ++..... +...+.++.|+|++++|+.... .
T Consensus 180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSG 258 (693)
T ss_dssp CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSC
T ss_pred EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCC
Confidence 4799 999998887764 39999987653 3333333 4455788999999998865432 3
Q ss_pred CeEEEEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcC----CCcEEEEEccCCce--eeeeccCCCCceEEEEEe
Q 028806 59 GTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE----NGLISLVGILPNRI--IQPIAEHSEYPIESLALS 132 (203)
Q Consensus 59 ~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~ 132 (203)
+.|+++|+.........+.. +.......+++++..|+..+. .+.|.++++.++.. ...+..+.. .+. .|+
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s 334 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG-DLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVH 334 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEE
T ss_pred cEEEEEECCCCCCceEEEeC-CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEE
Confidence 58999998754335566666 555555557777776665543 35788999887654 234444544 343 899
Q ss_pred CCCCeEEEEeC-CC--cEEEEeCCCcc
Q 028806 133 HDRKFLGSISH-DS--MLKLWDLDDIL 156 (203)
Q Consensus 133 ~~~~~l~~~~~-d~--~i~iwd~~~~~ 156 (203)
+++++|+.... ++ .|++|++.+..
T Consensus 335 ~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 335 SGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred EECCEEEEEEEECCeeEEEEEECCCCe
Confidence 99998877664 43 68999987543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.08 E-value=3.7e-08 Score=72.81 Aligned_cols=152 Identities=9% Similarity=0.047 Sum_probs=98.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC----CccceEEEEEeeCCCEEEEecCC---------CeEEEEEcC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF----SEEELTSVVLMKNGRKVVCGSQS---------GTVLLYSWG 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d---------~~i~~wd~~ 67 (203)
++++|+|+++++. ++.|.+|+..+++....... ....+..++++|+|+++++.... ..-.+|.+.
T Consensus 59 i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d 136 (297)
T 3g4e_A 59 VALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF 136 (297)
T ss_dssp EEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC
T ss_pred EEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE
Confidence 4678999965554 46899999988765432221 22457899999999977654321 233455554
Q ss_pred CccccceeeeccCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEc--cCCce-----eeeeccCCCCceEEEEEeCCCCeE
Q 028806 68 YFKDCSDRFVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGI--LPNRI-----IQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 68 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~--~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
..+.. ..+.. .......+ |+|+++.++.+ +..+.|.+|++ .++.. ...+..+.. ....++++++|++.
T Consensus 137 ~~g~~-~~~~~-~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 137 PDHHV-KKYFD-QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCIDAEGKLW 213 (297)
T ss_dssp TTSCE-EEEEE-EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEBTTSCEE
T ss_pred CCCCE-EEEee-ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEECCCCCEE
Confidence 32332 22332 33445667 89999877654 55788999987 45543 222222222 57889999999877
Q ss_pred EEEeCCCcEEEEeCCCccc
Q 028806 139 GSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 139 ~~~~~d~~i~iwd~~~~~~ 157 (203)
++....+.|.+||..++..
T Consensus 214 va~~~~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 214 VACYNGGRVIRLDPVTGKR 232 (297)
T ss_dssp EEEETTTEEEEECTTTCCE
T ss_pred EEEcCCCEEEEEcCCCceE
Confidence 7777778899999986653
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-08 Score=78.75 Aligned_cols=151 Identities=11% Similarity=0.014 Sum_probs=99.7
Q ss_pred CcccccCCEEEEEcCCC--eEEEEEcCCCeEEEee----cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTSGDG--TLSVCNLRKNTVQTRS----EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~--~i~vw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
++|+|+++.|+++..++ .|.+++...+.....+ ......+.+++++|++..|+++..++.|+.||.... . ..
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~-~-~~ 253 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ-E-VT 253 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC-C-EE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC-C-EE
Confidence 57899999888887765 7999988765433333 224456788999995555555777889999998643 2 22
Q ss_pred ee-----eccCCCce-e-EE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCC--------------CCceEEEEE
Q 028806 75 RF-----VGLSPNSV-D-AL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHS--------------EYPIESLAL 131 (203)
Q Consensus 75 ~~-----~~~~~~~v-~-~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--------------~~~i~~i~~ 131 (203)
.+ .+ ..... . .+ |+|+ +.++++-...+.|+.|+.... +..+.++. -.....+++
T Consensus 254 ~~~~~~~~g-~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~ 330 (409)
T 3hrp_A 254 LIKQLELSG-SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTV 330 (409)
T ss_dssp EEEECCCCS-CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred EEecccccC-CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence 22 11 11111 2 67 8995 555555556788999987533 22232221 114788999
Q ss_pred eCCCCeEEEEe-CCCcEEEEeCCCcc
Q 028806 132 SHDRKFLGSIS-HDSMLKLWDLDDIL 156 (203)
Q Consensus 132 ~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (203)
+|+|+++++-. .++.|+.|++.++.
T Consensus 331 d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 331 DEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp CTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred eCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 99999777777 78899999976554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-09 Score=82.04 Aligned_cols=159 Identities=9% Similarity=-0.075 Sum_probs=108.9
Q ss_pred CcccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCC-------ccceEEEEEeeCCCEEEEecC--CCeE
Q 028806 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFS-------EEELTSVVLMKNGRKVVCGSQ--SGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i 61 (203)
++++|++++++++. .++.|.+||+.+++.+.++..+ ......++++|||++++++.. ...+
T Consensus 70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v 149 (368)
T 1mda_H 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeE
Confidence 46899999888775 3688999999999988887533 123567899999999888764 3567
Q ss_pred EE--EEcCC------c----------------------------------cccc--------------------------
Q 028806 62 LL--YSWGY------F----------------------------------KDCS-------------------------- 73 (203)
Q Consensus 62 ~~--wd~~~------~----------------------------------~~~~-------------------------- 73 (203)
.+ +|+.+ . +...
T Consensus 150 ~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs 229 (368)
T 1mda_H 150 GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229 (368)
T ss_dssp EEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred EEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc
Confidence 77 76631 0 0000
Q ss_pred ----eeeecc-CC---------------------CceeEE-EeeCCCEEEEEcC-C--------CcEEEEEccCCceeee
Q 028806 74 ----DRFVGL-SP---------------------NSVDAL-LKLDEDRVITGSE-N--------GLISLVGILPNRIIQP 117 (203)
Q Consensus 74 ----~~~~~~-~~---------------------~~v~~~-~~~~~~~l~~~~~-d--------~~i~~~d~~~~~~~~~ 117 (203)
..+... .. .....+ ++|+++.++.+.. . ..+.++|+.+++.+..
T Consensus 230 ~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~ 309 (368)
T 1mda_H 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309 (368)
T ss_dssp SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred CCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE
Confidence 000000 00 000114 7888888887643 2 3566999999999988
Q ss_pred eccCCCCceEEEEEeCCCCe-EEEEe-CCCcEEEEeCCCcccCCCC
Q 028806 118 IAEHSEYPIESLALSHDRKF-LGSIS-HDSMLKLWDLDDILKGSGN 161 (203)
Q Consensus 118 ~~~~~~~~i~~i~~~~~~~~-l~~~~-~d~~i~iwd~~~~~~~~~~ 161 (203)
+... . ....|+|+|++++ +++.. .++.|.++|+.+++.....
T Consensus 310 i~vg-~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 310 ISNG-H-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp CEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred EECC-C-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence 8766 3 5789999999985 55555 5899999999998765443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-08 Score=76.61 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=100.9
Q ss_pred CcccccCCEEEEEcC--CCeEEEEEcCCCeEEEeecCCcc-------ceEEEEEeeCCCEEEE-----------------
Q 028806 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEE-------ELTSVVLMKNGRKVVC----------------- 54 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~----------------- 54 (203)
++|+|||++|+++.. ++.|.++|+.+++.+..+..... .-..+.+++++++++.
T Consensus 182 ~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 182 NALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT 261 (426)
T ss_dssp SEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred EEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence 578999999988764 57899999999988776654211 0111334444443332
Q ss_pred --------------------ecCCCeEEEEEcCCccc-cceeeec---------cCCCceeEE-EeeCCCEEEEEcC---
Q 028806 55 --------------------GSQSGTVLLYSWGYFKD-CSDRFVG---------LSPNSVDAL-LKLDEDRVITGSE--- 100 (203)
Q Consensus 55 --------------------~~~d~~i~~wd~~~~~~-~~~~~~~---------~~~~~v~~~-~~~~~~~l~~~~~--- 100 (203)
.+..+.+.+.|+..... .+..+.. ........+ ++|+++.+++...
T Consensus 262 ~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~ 341 (426)
T 3c75_H 262 EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRD 341 (426)
T ss_dssp TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECC
T ss_pred CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccc
Confidence 22334444555431110 0001000 000111224 7899888887653
Q ss_pred -------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEe-CCCcEEEEeCCCcccCCC
Q 028806 101 -------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS-HDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 101 -------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~~ 160 (203)
.+.|.++|+.+.+.+..+... . ....+.|+|+++ ++++.. .++.|.++|+.+.+....
T Consensus 342 ~gthk~~s~~VsVID~~T~kvv~~I~vg-~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGERINKIELG-H-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred cccccCCCCEEEEEECCCCeEEEEEECC-C-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 347999999999999988765 2 478999999998 888887 589999999999876543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.02 E-value=4.5e-08 Score=72.42 Aligned_cols=150 Identities=10% Similarity=0.082 Sum_probs=98.1
Q ss_pred Cccccc-CCEEEEEcCCCeEEEEEcCCCeEEEe-ecC----CccceEEEEEeeCCCEEEEecCC---------------C
Q 028806 1 MTFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTR-SEF----SEEELTSVVLMKNGRKVVCGSQS---------------G 59 (203)
Q Consensus 1 l~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------~ 59 (203)
++++++ ++++++.. .+.|.+|+.. ++.... ... ....+.++++.++++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC
Confidence 357788 66555554 3479999988 665433 221 12357899999999888776654 4
Q ss_pred eEEEEEcCCccccceeeeccCCCceeEE-Ee----eCCCEEEEE-cCCCcEEEEEcc-CCc-----eeeeeccCCCCceE
Q 028806 60 TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LK----LDEDRVITG-SENGLISLVGIL-PNR-----IIQPIAEHSEYPIE 127 (203)
Q Consensus 60 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~----~~~~~l~~~-~~d~~i~~~d~~-~~~-----~~~~~~~~~~~~i~ 127 (203)
.|..|+.. +... .+.. .......+ ++ |+++.++.+ ..++.|.+|++. ++. ....+..+....+.
T Consensus 154 ~l~~~~~~--g~~~-~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD--GQMI-QVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 229 (314)
T ss_dssp EEEEECTT--SCEE-EEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred eEEEECCC--CCEE-Eecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCC
Confidence 56666653 3332 2222 23345666 88 998766555 567889999986 443 22233333202578
Q ss_pred EEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 128 SLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 128 ~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.++++++|+++++...++.|.+||..++.
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence 89999999888887788899999987544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-07 Score=69.76 Aligned_cols=146 Identities=7% Similarity=0.073 Sum_probs=94.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC----CccceEEEEEeeCCCEEEEecC------CCeEEEEEcCCcc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF----SEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFK 70 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~ 70 (203)
++|+|+|+++++. . ..|.+|+..+++....... ....+..++++|+|+++++... .+.|+.++ . +
T Consensus 95 i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~--g 169 (326)
T 2ghs_A 95 LAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K--G 169 (326)
T ss_dssp EEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T--T
T ss_pred EEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C--C
Confidence 3578888877765 3 4599999988765432221 1246889999999997765432 24555555 2 3
Q ss_pred ccceeeeccCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEcc--CC-ce-----eeeeccCCCCceEEEEEeCCCCeEEE
Q 028806 71 DCSDRFVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGIL--PN-RI-----IQPIAEHSEYPIESLALSHDRKFLGS 140 (203)
Q Consensus 71 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~--~~-~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~ 140 (203)
.. ..+.. .......+ |+|+++.++.+ +.++.|.+|++. ++ .. ...+..... .+..++++++|.+.++
T Consensus 170 ~~-~~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi~~d~~G~lwva 246 (326)
T 2ghs_A 170 KV-TKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCDAEGHIWNA 246 (326)
T ss_dssp EE-EEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEECTTSCEEEE
T ss_pred cE-EEeeC-CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCC-CCCeeEECCCCCEEEE
Confidence 32 22322 33345667 89999877655 456889999986 55 32 222222222 5678999999987776
Q ss_pred EeCCCcEEEEeCCC
Q 028806 141 ISHDSMLKLWDLDD 154 (203)
Q Consensus 141 ~~~d~~i~iwd~~~ 154 (203)
...++.|.+|+...
T Consensus 247 ~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 247 RWGEGAVDRYDTDG 260 (326)
T ss_dssp EETTTEEEEECTTC
T ss_pred EeCCCEEEEECCCC
Confidence 66678899999743
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-07 Score=68.07 Aligned_cols=154 Identities=9% Similarity=0.046 Sum_probs=104.0
Q ss_pred CcccccCCEEEEEcC--CCeEEEEEcCCCeEEEeecCCcc-ceEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEE-ELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|+|+|++.++++.+. ++.|+++|+.+++.+..+..... ....+++. +..|+.+ -.++.+.++|..+ .+.+..+
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t-~~v~~~i 102 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRT-LSNIKNF 102 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTT-TEEEEEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCC-CcEEEEE
Confidence 468888755555443 58999999999998887653221 22344544 5555544 4588999999874 4566666
Q ss_pred eccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----CceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.. ....-+. ++++|+.++++..++.|.++|..+.+.+..+..... ..+..+.|. ++...+....++.|.+.|.
T Consensus 103 ~~-g~~~g~g-lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~ 179 (266)
T 2iwa_A 103 TH-QMKDGWG-LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISA 179 (266)
T ss_dssp EC-CSSSCCE-EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred EC-CCCCeEE-EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEEC
Confidence 54 3011122 577888888888888999999999888777754311 135678888 6654444446789999999
Q ss_pred CCcccCCC
Q 028806 153 DDILKGSG 160 (203)
Q Consensus 153 ~~~~~~~~ 160 (203)
.++.....
T Consensus 180 ~tg~V~~~ 187 (266)
T 2iwa_A 180 KDGTLLGW 187 (266)
T ss_dssp TTCCEEEE
T ss_pred CCCcEEEE
Confidence 99876544
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.91 E-value=5e-08 Score=72.36 Aligned_cols=143 Identities=8% Similarity=0.069 Sum_probs=92.3
Q ss_pred CcccccCCEEEE----EcC-------------CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC-----
Q 028806 1 MTFAADAMKLLG----TSG-------------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----- 58 (203)
Q Consensus 1 l~~sp~~~~l~~----~~~-------------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 58 (203)
++++|+|+++++ |.. .+.|..++..+++..... .......++|+|+++.|+++...
T Consensus 136 i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~ 213 (305)
T 3dr2_A 136 LIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHG 213 (305)
T ss_dssp EEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---C
T ss_pred EEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCC
Confidence 357888987776 332 256777887666543332 33456789999999988777654
Q ss_pred -CeEEEEEcCCccc-cceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC
Q 028806 59 -GTVLLYSWGYFKD-CSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 59 -~~i~~wd~~~~~~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
+.|.+|++...+. ....+..........+ +.++|++ .+++.++ |.+|+. .++.+..+..+ . .+.+++|.|++
T Consensus 214 ~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~g-v~~~~~-~g~~~~~~~~~-~-~~~~~~f~~d~ 288 (305)
T 3dr2_A 214 SVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGTG-VCVFDS-DGQLLGHIPTP-G-TASNCTFDQAQ 288 (305)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSSE-EEEECT-TSCEEEEEECS-S-CCCEEEECTTS
T ss_pred CCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCCc-EEEECC-CCCEEEEEECC-C-ceeEEEEeCCC
Confidence 6899999863220 0111111012334556 7889984 4444444 999997 57777777665 3 47889999999
Q ss_pred CeEEEEeCCCcEEEEe
Q 028806 136 KFLGSISHDSMLKLWD 151 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd 151 (203)
+.|+.++.+ .|+.++
T Consensus 289 ~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 289 QRLFITGGP-CLWMLP 303 (305)
T ss_dssp CEEEEEETT-EEEEEE
T ss_pred CEEEEEcCC-eEEEEE
Confidence 888887765 444444
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-07 Score=73.88 Aligned_cols=113 Identities=9% Similarity=-0.090 Sum_probs=84.6
Q ss_pred ccCCEEEEEcC-C----CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec----------CCCeEEEEEcCCc
Q 028806 5 ADAMKLLGTSG-D----GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGYF 69 (203)
Q Consensus 5 p~~~~l~~~~~-d----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~wd~~~~ 69 (203)
|+++.++++.. + +.|.++|..+.+.+..+.....+ .++++|++++|+++. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t- 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT- 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence 45666655543 2 69999999999999888765555 899999999888876 367899999975
Q ss_pred cccceeeeccC-------CCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccC
Q 028806 70 KDCSDRFVGLS-------PNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEH 121 (203)
Q Consensus 70 ~~~~~~~~~~~-------~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~ 121 (203)
...+..+.. . ......+ ++|+|+++++++. ++.|.++|+.+++.+..+...
T Consensus 159 ~~vv~~I~v-~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~ 219 (426)
T 3c75_H 159 FLPIADIEL-PDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP 219 (426)
T ss_dssp CCEEEEEEE-TTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred CcEEEEEEC-CCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC
Confidence 345554432 1 1223445 8999999999874 578999999999988887653
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.89 E-value=4.1e-08 Score=75.01 Aligned_cols=151 Identities=11% Similarity=-0.005 Sum_probs=101.1
Q ss_pred CcccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCCc-------cceEEEEEeeCCCEEEEecC--CCeE
Q 028806 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFSE-------EELTSVVLMKNGRKVVCGSQ--SGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~i 61 (203)
|++||+|++++++. .++.|.+||..+.+.+..+.... .....++++|||+++++++. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 47899999887765 35789999999998887764321 23557899999999988864 6899
Q ss_pred EEEEcCCccccceeeeccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccC-CceeeeeccCC---CCceE-EEEEe-CCC
Q 028806 62 LLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILP-NRIIQPIAEHS---EYPIE-SLALS-HDR 135 (203)
Q Consensus 62 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~---~~~i~-~i~~~-~~~ 135 (203)
.++|+.+ .+.+..+.. . + ...++......+++.+.||.+.+.++.+ ++........- ..++. ...|. ++|
T Consensus 163 sVID~~t-~~vv~tI~v-~-g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 163 GVVDLEG-KAFKRMLDV-P-D-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEETTT-TEEEEEEEC-C-S-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEECCC-CcEEEEEEC-C-C-cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 9999975 455666543 2 2 1222433456777888899988888876 55432211110 11222 24665 577
Q ss_pred CeEEEEeCCCcEEEEeCCCcc
Q 028806 136 KFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~~~~~ 156 (203)
++++ .+.++.+++.|+.+..
T Consensus 239 ~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 239 RLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp EEEE-EBTTSEEEEEECTTSS
T ss_pred cEEE-EeCCCEEEEEECCCCc
Confidence 5544 5568999999997653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-07 Score=69.78 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=88.3
Q ss_pred cccccCCEEEEEcC------CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCCeEEEEEcC-Ccc-cc
Q 028806 2 TFAADAMKLLGTSG------DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWG-YFK-DC 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~-~~~-~~ 72 (203)
+++|+|+++++... .+.|..++ +++... +.........++|+|+++.++.+ ..++.|.+|++. ..+ ..
T Consensus 140 ~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~ 216 (326)
T 2ghs_A 140 RMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT 216 (326)
T ss_dssp EECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred EECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcc
Confidence 57889987665532 24566666 454432 22233456789999999877554 457899999985 122 11
Q ss_pred --ceee---eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEe-CCCCeEEEEe
Q 028806 73 --SDRF---VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSIS 142 (203)
Q Consensus 73 --~~~~---~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~ 142 (203)
...+ .. ....+..+ +.++|.++++....+.|.+|+. +++.+..+..+.. .+.+++|. |++..|++++
T Consensus 217 ~~~~~~~~~~~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 217 GKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SCCEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred cCceEEEECCC-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEe
Confidence 1122 22 23345666 7889987777666788999998 5777777766533 68999998 8888776555
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-07 Score=77.21 Aligned_cols=154 Identities=10% Similarity=0.054 Sum_probs=104.5
Q ss_pred cccccCCEEEEEcCCCe-------------------EEEEEcCCCeEEEeecC--Cc-------cceEEEEEeeCCC---
Q 028806 2 TFAADAMKLLGTSGDGT-------------------LSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNGR--- 50 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~-------------------i~vw~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~--- 50 (203)
+++|+..+|+.+..++. |..+|..+++.+..++. |. .++.......+++
T Consensus 241 ~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~ 320 (689)
T 1yiq_A 241 AYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRK 320 (689)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred eEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEE
Confidence 45677888888877763 99999999998877653 21 1222223334564
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeeccC---------------------------C----------C-ceeEE-EeeC
Q 028806 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLS---------------------------P----------N-SVDAL-LKLD 91 (203)
Q Consensus 51 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~---------------------------~----------~-~v~~~-~~~~ 91 (203)
.++.++.+|.++++|..+ ++.+....... . . .-..+ ++|+
T Consensus 321 ~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~ 399 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD 399 (689)
T ss_dssp EEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred EEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC
Confidence 788899999999999875 34331111000 0 0 01113 6777
Q ss_pred CCEEEEEcC---------------------------------------------CCcEEEEEccCCceeeeeccCCCCce
Q 028806 92 EDRVITGSE---------------------------------------------NGLISLVGILPNRIIQPIAEHSEYPI 126 (203)
Q Consensus 92 ~~~l~~~~~---------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~i 126 (203)
..++++... +|.|..||+.+++.+..+..+. ++
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~ 477 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT--IF 477 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS--SC
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC--Cc
Confidence 777766421 3779999999999998887663 34
Q ss_pred EEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 127 ESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 127 ~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
....+...+..+++++.|+.|+.||.++++..
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 44466667889999999999999999998754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-10 Score=88.83 Aligned_cols=144 Identities=11% Similarity=0.003 Sum_probs=77.8
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCcc-ceE-EEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEE-ELT-SVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.+++..+++++.|+.|+.||..+++.+.....+.. .+. ...+. .+..+++++.++.++.||..+ ++.+..+.. +.
T Consensus 46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~-~~ 122 (369)
T 2hz6_A 46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSS-AF 122 (369)
T ss_dssp ----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------
T ss_pred EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCC-CcEEEEecC-CC
Confidence 34666777778999999999988876655543321 110 01111 345677788899999999975 444444443 22
Q ss_pred CceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC---CeEEEEeCCCcEEEEeCCCccc
Q 028806 82 NSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR---KFLGSISHDSMLKLWDLDDILK 157 (203)
Q Consensus 82 ~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~d~~i~iwd~~~~~~ 157 (203)
.. ++|++..+++++.++.|+.||..+|+.+..+..+ ......+.++. ..+++++.++.|+.||..++..
T Consensus 123 ----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 123 ----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp --------------EEEEEEEEEEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred ----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 13 5678889999999999999999999887665432 12223344432 5677788899999999988764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.4e-07 Score=69.09 Aligned_cols=149 Identities=12% Similarity=0.104 Sum_probs=94.0
Q ss_pred CcccccCCEEEEEcC--CCeEEEEEcCCCeEEEeec-------CCccceEEEEEeeCCCEEEEecC-----CCeEEEEEc
Q 028806 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSE-------FSEEELTSVVLMKNGRKVVCGSQ-----SGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~wd~ 66 (203)
|+++|+|+++++... ++.++||.+.+++.. .+. .+-..+..++++++++++++-.. ...|.+||+
T Consensus 22 va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 22 ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp EEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred EEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence 468899998888642 342445554455443 221 23457899999999876665433 578999998
Q ss_pred CCccccceeeec-----cCCCceeEE-EeeCCCEEEEE-c---CCCcEEEEEccCCceeeeeccCC--------------
Q 028806 67 GYFKDCSDRFVG-----LSPNSVDAL-LKLDEDRVITG-S---ENGLISLVGILPNRIIQPIAEHS-------------- 122 (203)
Q Consensus 67 ~~~~~~~~~~~~-----~~~~~v~~~-~~~~~~~l~~~-~---~d~~i~~~d~~~~~~~~~~~~~~-------------- 122 (203)
.+ +..+..+.. .+...+..+ +++++..++.+ . .++.|.+||+.+++....+..|.
T Consensus 101 ~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~ 179 (343)
T 2qe8_A 101 LN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV 179 (343)
T ss_dssp TT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE
T ss_pred CC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCE
Confidence 74 343444432 012345677 78765555444 3 56789999998877665543310
Q ss_pred --------------CCceEEEEEeCCCCeEEEEeCCC-cEEEEe
Q 028806 123 --------------EYPIESLALSHDRKFLGSISHDS-MLKLWD 151 (203)
Q Consensus 123 --------------~~~i~~i~~~~~~~~l~~~~~d~-~i~iwd 151 (203)
...+..|+|+|+++.|+++...+ .|..++
T Consensus 180 ~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 180 PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred EEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 01357899999999888887655 455554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.4e-07 Score=70.93 Aligned_cols=145 Identities=10% Similarity=0.040 Sum_probs=99.5
Q ss_pred ccCCEEE-EEcCCCeEEEEEcCCC----eEEEeec-------CCccceEEEEEeeCCCEEEEecCC------CeEEEEEc
Q 028806 5 ADAMKLL-GTSGDGTLSVCNLRKN----TVQTRSE-------FSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSW 66 (203)
Q Consensus 5 p~~~~l~-~~~~d~~i~vw~~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~ 66 (203)
+++++|+ .+..++.|+|+|+.+. +...+++ ........+...|++ .++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 7787764 5667889999998754 6666663 112345677888999 66665544 78999998
Q ss_pred CCccccceeeeccCCC---ceeEE-EeeCCCEEEEEc-------------------CCCcEEEEEccCCceeeeeccCC-
Q 028806 67 GYFKDCSDRFVGLSPN---SVDAL-LKLDEDRVITGS-------------------ENGLISLVGILPNRIIQPIAEHS- 122 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~---~v~~~-~~~~~~~l~~~~-------------------~d~~i~~~d~~~~~~~~~~~~~~- 122 (203)
.+ .+.+..+.. ... .-+.+ |+|+++.+++.. ....|.+||+.+++.+.++....
T Consensus 172 ~T-~~v~~~~~~-~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 172 YS-FEPLGKWEI-DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp TT-CCEEEECCS-BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred CC-CeEEEEEcc-CCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 75 455555542 212 23346 799999998885 36789999999988888876641
Q ss_pred CCceEEEEE--eCCCCeEEEEe------CCCcEEEEeC
Q 028806 123 EYPIESLAL--SHDRKFLGSIS------HDSMLKLWDL 152 (203)
Q Consensus 123 ~~~i~~i~~--~~~~~~l~~~~------~d~~i~iwd~ 152 (203)
+.....+.| +|+++++++++ .+++|.+|..
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 123445555 99999887766 4567765543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-07 Score=71.36 Aligned_cols=149 Identities=11% Similarity=0.016 Sum_probs=101.7
Q ss_pred cccccCCEEEEEcCC------CeEEEEEcCCCeEEEeecCCcc---ceEEEEEeeCCCEEEEec----------------
Q 028806 2 TFAADAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEE---ELTSVVLMKNGRKVVCGS---------------- 56 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~---------------- 56 (203)
..+|+| +++++..+ +.|.++|..+.+.+..+..... --..+.|+|+++.++++.
T Consensus 144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 356888 66665544 7899999999998888863322 234588899999988884
Q ss_pred ---CCCeEEEEEcCCccccceeeeccCC--CceeEE-E--eeCCCEEEEEcC------CCcEEEEEccCCce--eeee--
Q 028806 57 ---QSGTVLLYSWGYFKDCSDRFVGLSP--NSVDAL-L--KLDEDRVITGSE------NGLISLVGILPNRI--IQPI-- 118 (203)
Q Consensus 57 ---~d~~i~~wd~~~~~~~~~~~~~~~~--~~v~~~-~--~~~~~~l~~~~~------d~~i~~~d~~~~~~--~~~~-- 118 (203)
...+|.+||+.. +..+..+.. .. .....+ | +|+++++++++. ++.|.+|....+.. ++.+
T Consensus 223 ~~~~~d~V~v~D~~~-~k~~~tI~v-g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi 300 (462)
T 2ece_A 223 KDRYGNRIHFWDLRK-RKRIHSLTL-GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI 300 (462)
T ss_dssp HHHSCCEEEEEETTT-TEEEEEEES-CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred hhccCCEEEEEECCC-CcEeeEEec-CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence 368999999975 455555554 21 223344 4 999999888774 55777765544321 1111
Q ss_pred ccC---------------CCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 119 AEH---------------SEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 119 ~~~---------------~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
... .......|.++|||++|+++. ..+.|.+||+.
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 000 011467899999999998877 57899999985
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-07 Score=71.42 Aligned_cols=152 Identities=7% Similarity=0.033 Sum_probs=95.8
Q ss_pred CcccccCCEEEEEcC-----CCeEEEEEcCCCeEEEeecCC------ccceEEEEEeeCCCEE-EEec---CCCeEEEEE
Q 028806 1 MTFAADAMKLLGTSG-----DGTLSVCNLRKNTVQTRSEFS------EEELTSVVLMKNGRKV-VCGS---QSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~d~~i~~wd 65 (203)
|+++|+++++++-.. ++.|.+||+.+++.+..+..+ ...+..+++++++..+ ++-. .++.|.+||
T Consensus 72 v~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d 151 (343)
T 2qe8_A 72 IKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVD 151 (343)
T ss_dssp EEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEE
T ss_pred EEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEE
Confidence 467888876665433 578999999998876655422 2356889999865454 4444 578999999
Q ss_pred cCCccccceeeeccC-----------------------------CCceeEE-EeeCCCEEEEEcCCC-cEEEEEcc---C
Q 028806 66 WGYFKDCSDRFVGLS-----------------------------PNSVDAL-LKLDEDRVITGSENG-LISLVGIL---P 111 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~-----------------------------~~~v~~~-~~~~~~~l~~~~~d~-~i~~~d~~---~ 111 (203)
+.. +.....+.. | ...+..+ ++|+++.|+++...+ .|..++.. .
T Consensus 152 ~~~-g~~~r~~~~-~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~ 229 (343)
T 2qe8_A 152 LQT-GLAARVLQG-YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSN 229 (343)
T ss_dssp TTT-CCEEEECTT-CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTC
T ss_pred CCC-CCEEEEecC-CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcC
Confidence 863 232222211 1 0124567 899999888887665 45555432 1
Q ss_pred Cc-----eee--eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 112 NR-----IIQ--PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 112 ~~-----~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+. ... ...++.. ....++++++|+++++...++.|.+||..++
T Consensus 230 ~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 230 LQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp TTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred CCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence 11 000 1112212 3457899999998888888899999998433
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5.8e-07 Score=64.80 Aligned_cols=152 Identities=9% Similarity=0.069 Sum_probs=102.8
Q ss_pred cccccCCEEEEEcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKLLGTSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
.|+ ++.++.+++.+| .|+++|+.+++.+..+.... ......+.+++..|+... .++.+.+||..+ ...+..+..
T Consensus 49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t-~~~~~ti~~ 125 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRN-LRQVRSFNY 125 (262)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTT-CCEEEEEEC
T ss_pred EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECcc-CcEEEEEEC
Confidence 466 565666666655 89999999999888776433 333333444565666554 588999999975 466666664
Q ss_pred cCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-C---CceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-E---YPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~---~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.... +. +.+++..|+.+...+.|.++|..+.+.+..+.... + ..+..+.|. +|+..+..-.+..|.+.|.++
T Consensus 126 -~~eG-~g-lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t 201 (262)
T 3nol_A 126 -DGEG-WG-LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPET 201 (262)
T ss_dssp -SSCC-CC-EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT
T ss_pred -CCCc-eE-EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCC
Confidence 3211 22 45778888877778889999999998887765531 1 134567776 665544444678999999988
Q ss_pred cccCCC
Q 028806 155 ILKGSG 160 (203)
Q Consensus 155 ~~~~~~ 160 (203)
+.....
T Consensus 202 G~V~~~ 207 (262)
T 3nol_A 202 GKVTGI 207 (262)
T ss_dssp CBEEEE
T ss_pred CcEEEE
Confidence 876543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=3.3e-07 Score=75.37 Aligned_cols=155 Identities=10% Similarity=0.086 Sum_probs=107.6
Q ss_pred cccccCCEEEEEcCCC-------------------eEEEEEcCCCeEEEeecC--Cc-------cceEEEEEeeCC---C
Q 028806 2 TFAADAMKLLGTSGDG-------------------TLSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNG---R 50 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~-------------------~i~vw~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~ 50 (203)
+++|++.+|+.+..++ .|..+|..+++.+..++. |. .....+....+| .
T Consensus 249 ~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~ 328 (677)
T 1kb0_A 249 TFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRK 328 (677)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEE
T ss_pred eEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEee
Confidence 4567788888877654 599999999998877653 21 122333444577 6
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeeccCC-----------Cce------------------------eEE-EeeCCCE
Q 028806 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP-----------NSV------------------------DAL-LKLDEDR 94 (203)
Q Consensus 51 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-----------~~v------------------------~~~-~~~~~~~ 94 (203)
.++.++.+|.++++|..+ ++.+..+.. .. .++ ..+ ++|+..+
T Consensus 329 ~l~~~~~~G~l~~lD~~t-G~~l~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~ 406 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTN-GKFISAKNF-VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (677)
T ss_dssp EEEECCTTSEEEEEETTT-CCEEEEEES-SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred EEEEECCCCEEEEEECCC-CCEeccccc-cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence 788999999999999875 344333221 10 000 133 6888888
Q ss_pred EEEEcC-------------------------------------------CCcEEEEEccCCceeeeeccCCCCceEEEEE
Q 028806 95 VITGSE-------------------------------------------NGLISLVGILPNRIIQPIAEHSEYPIESLAL 131 (203)
Q Consensus 95 l~~~~~-------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~ 131 (203)
+++... .+.|..||+.+++.+..+... . ++....+
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~-~~~~g~~ 484 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-S-PWNGGTL 484 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-S-SCCCCEE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-C-CCcCcce
Confidence 777543 167999999999998887654 2 4555567
Q ss_pred eCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 132 SHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 132 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
...+..+++++.|+.+++||+++++....
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceeee
Confidence 77888888899999999999999876543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.5e-07 Score=64.96 Aligned_cols=147 Identities=12% Similarity=-0.018 Sum_probs=99.5
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeeccCCCcee
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD 85 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 85 (203)
+.++.+.+.+|.|+++|+.+++.+..+ - ..........+++..|+ ..-.++.+.+||..+ .+.+..+.. ... -+
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T-l~~~~ti~~-~~e-Gw 139 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMP-PQRERTTRY-SGE-GW 139 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTT-TEEEEEEEC-SSC-CC
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCc-CcEEEEEeC-CCc-ee
Confidence 456677788889999999999877666 2 22333322334444444 444688999999975 466666664 322 23
Q ss_pred EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 86 ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
. +.+++..|+.+...+.|.++|..+.+.+..+..... ..+..+.|. +|+..+..-.+..|.+.|.+++.....
T Consensus 140 G-Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 140 G-LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp C-EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred E-EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence 3 357788888888889999999999988877754321 134667777 665444444678999999998876543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=6.4e-06 Score=59.69 Aligned_cols=151 Identities=9% Similarity=-0.035 Sum_probs=95.1
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|+++.|+ +-...+.|.++++........+.........+++++++..|+.+ ...+.|.++++.. .....+..
T Consensus 41 i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--~~~~~~~~ 118 (267)
T 1npe_A 41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRVLFD 118 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC--CCEEEEEE
Confidence 35777665554 44556889999987654433333333567899999976555544 4577899999863 22223322
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCceeeeec-cCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIA-EHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
........+ ++|++..|+.+.. .+.|..+++.. .....+. .... ....++++|++..|+.+. ..+.|.++++
T Consensus 119 ~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~-~P~gia~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLG-LPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCS-CEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCC-CCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence 022345677 8997776666554 36788888753 3222222 2212 568899999887766555 5678999998
Q ss_pred CCc
Q 028806 153 DDI 155 (203)
Q Consensus 153 ~~~ 155 (203)
.+.
T Consensus 197 ~g~ 199 (267)
T 1npe_A 197 AQP 199 (267)
T ss_dssp TEE
T ss_pred CCC
Confidence 754
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.9e-07 Score=71.83 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=100.2
Q ss_pred ccCCEEEEEc------------------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCC-------
Q 028806 5 ADAMKLLGTS------------------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG------- 59 (203)
Q Consensus 5 p~~~~l~~~~------------------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------- 59 (203)
|+++++++++ .++.+.++|..+.+.+..+.-.. ....++++|+|+++++++.+.
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~ 223 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLP 223 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchh
Confidence 8899988874 34679999999998888776433 456688999999998887543
Q ss_pred -------------------------------eEEEEEcCCc-ccc-ceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcE
Q 028806 60 -------------------------------TVLLYSWGYF-KDC-SDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLI 104 (203)
Q Consensus 60 -------------------------------~i~~wd~~~~-~~~-~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i 104 (203)
.|.+.|.... +.. +..+.. .. ...++ ++|||+++++++. +..|
T Consensus 224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~-~PhGv~~sPDGk~v~V~~~~s~~V 301 (595)
T 1fwx_A 224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-AN-NPHGCNMAPDKKHLCVAGKLSPTV 301 (595)
T ss_dssp HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ES-SCCCEEECTTSSEEEEECTTSSBE
T ss_pred hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CC-CceEEEEcCCCCEEEEeCCCCCeE
Confidence 2555555431 112 233332 22 33445 8999999887764 7889
Q ss_pred EEEEccCCc------------eeeeeccCCCCceEEEEEeCCCCeEE-EEeCCCcEEEEeCCC
Q 028806 105 SLVGILPNR------------IIQPIAEHSEYPIESLALSHDRKFLG-SISHDSMLKLWDLDD 154 (203)
Q Consensus 105 ~~~d~~~~~------------~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~iwd~~~ 154 (203)
.++|+.+.+ ....+... .....++|+|+| +++ +...|++|.+|++.+
T Consensus 302 sVid~~~~~~~~~~~l~~~~~v~~~v~vG--~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 302 TVLDVTRFDAVFYENADPRSAVVAEPELG--LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEGGGHHHHHHSCCCGGGGEEECCBCC--SCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred EEEECcccccccccccCcccceEEEcCCC--CCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 999998652 33444433 257889999999 554 555899999999876
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-06 Score=71.45 Aligned_cols=144 Identities=9% Similarity=0.039 Sum_probs=99.6
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCc-----------cce------------------------EEEEEeeCCCEE
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-----------EEL------------------------TSVVLMKNGRKV 52 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-----------~~v------------------------~~~~~~~~~~~l 52 (203)
..|+.++.+|.|+++|..+++.+..+.... .++ ..++++|+..++
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 578888999999999999998876554211 011 146788888888
Q ss_pred EEecC-------------------------------------------CCeEEEEEcCCccccceeeeccCCCceeEE-E
Q 028806 53 VCGSQ-------------------------------------------SGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-L 88 (203)
Q Consensus 53 ~~~~~-------------------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~ 88 (203)
++... .+.|..||+.+. +.+-.+.. ..++... +
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~--~~~~~~g~~ 484 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWSVEH--VSPWNGGTL 484 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT-EEEEEEEE--SSSCCCCEE
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC-cEEeecCC--CCCCcCcce
Confidence 76533 167999999764 44444433 2233333 6
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe-EEEEeC----------------CCcEEEEe
Q 028806 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF-LGSISH----------------DSMLKLWD 151 (203)
Q Consensus 89 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~----------------d~~i~iwd 151 (203)
...+.+++.++.++.+++||+.+++.+..+.........-+.|.++|+. +++.+. .+.+.+|.
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~ 564 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFV 564 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEe
Confidence 7788899999999999999999999998887654322334667788864 444322 36788888
Q ss_pred CCC
Q 028806 152 LDD 154 (203)
Q Consensus 152 ~~~ 154 (203)
+..
T Consensus 565 l~~ 567 (677)
T 1kb0_A 565 VGG 567 (677)
T ss_dssp ETC
T ss_pred ccc
Confidence 764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-05 Score=57.76 Aligned_cols=152 Identities=11% Similarity=0.051 Sum_probs=100.2
Q ss_pred cccccCCEEEEEcCC--CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKLLGTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
.|++ +.++.+.+.. ..|+++|+.+++.+..+..... .......+.+..|+. .-.++.+.+||..+ ...+..+..
T Consensus 27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t-l~~~~ti~~ 103 (243)
T 3mbr_X 27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLAT-LTPRARFRY 103 (243)
T ss_dssp EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTT-TEEEEEEEC
T ss_pred EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCc-CcEEEEEeC
Confidence 4554 4455555554 4899999999998887754322 322333334555554 44688999999975 466666664
Q ss_pred cCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC----CceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 79 LSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE----YPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
... -+.+ .+++..|+.+..++.|.++|..+.+.+..+..... ..+..+.|. +|+..+..-.+..|.+.|.++
T Consensus 104 -~~~-Gwgl-t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t 179 (243)
T 3mbr_X 104 -PGE-GWAL-TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS 179 (243)
T ss_dssp -SSC-CCEE-EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT
T ss_pred -CCC-ceEE-eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC
Confidence 332 2333 56777777777788999999999888877754321 135566665 565544444677899999998
Q ss_pred cccCCC
Q 028806 155 ILKGSG 160 (203)
Q Consensus 155 ~~~~~~ 160 (203)
+.....
T Consensus 180 G~V~~~ 185 (243)
T 3mbr_X 180 GKVVAW 185 (243)
T ss_dssp CBEEEE
T ss_pred CCEEEE
Confidence 876543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.3e-06 Score=64.18 Aligned_cols=148 Identities=5% Similarity=0.058 Sum_probs=91.7
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC-C----eEEEEEcCCccccc-
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-G----TVLLYSWGYFKDCS- 73 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~----~i~~wd~~~~~~~~- 73 (203)
|+|+| ++..|+.+...+.|+++++.++....... .......++|+++++.|+++... + .+.+++.. +...
T Consensus 142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~--g~~~~ 218 (430)
T 3tc9_A 142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE--SGFKV 218 (430)
T ss_dssp EEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG--GTSCS
T ss_pred EEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC--Cceee
Confidence 46777 45555555444889999988776544433 45568899999999966666542 1 34444432 2221
Q ss_pred -eeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEE
Q 028806 74 -DRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKL 149 (203)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i 149 (203)
..+.. . .....+ ++| ++.++++-...+.|..++...+................++|+|++++|+.+. ..+.|..
T Consensus 219 ~~~l~~-~-~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 219 ITELTK-G-QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp EEEEEE-C-SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeecc-C-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 22322 2 233455 788 6666666666788999998766542222221112467899999999665554 6678999
Q ss_pred EeCC
Q 028806 150 WDLD 153 (203)
Q Consensus 150 wd~~ 153 (203)
++..
T Consensus 297 ~~~d 300 (430)
T 3tc9_A 297 SDYD 300 (430)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 8765
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=6.5e-06 Score=59.77 Aligned_cols=145 Identities=9% Similarity=-0.049 Sum_probs=98.5
Q ss_pred cCCEE-EEEcCCCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cCCC
Q 028806 6 DAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPN 82 (203)
Q Consensus 6 ~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~ 82 (203)
+++.| ++.-.++.+.++|..+.+.+.++... .. ...+++++..++++..++.|.++|..+. .....+.. ....
T Consensus 74 ~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~ 149 (266)
T 2iwa_A 74 LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGH 149 (266)
T ss_dssp ETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTE
T ss_pred eCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCc
Confidence 35444 44456899999999999888888643 22 2346678887777777889999998753 44444432 0111
Q ss_pred ---ceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC------------CCceEEEEEeCCCCeEE-EEeCCC
Q 028806 83 ---SVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------------EYPIESLALSHDRKFLG-SISHDS 145 (203)
Q Consensus 83 ---~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------------~~~i~~i~~~~~~~~l~-~~~~d~ 145 (203)
.+..+ |. ++...+.....+.|.+.|+.+++.+..+.... ......|+|+|+++.|+ ++...+
T Consensus 150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 24455 55 66544444457899999999999888775420 11457999999987655 555778
Q ss_pred cEEEEeCCCc
Q 028806 146 MLKLWDLDDI 155 (203)
Q Consensus 146 ~i~iwd~~~~ 155 (203)
.+++.++...
T Consensus 229 ~v~~i~l~~~ 238 (266)
T 2iwa_A 229 KLFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEecc
Confidence 8999888664
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-06 Score=67.82 Aligned_cols=147 Identities=10% Similarity=0.068 Sum_probs=103.3
Q ss_pred ccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCC-ccceEEEEE-e-eCCCEEEEec------------------CCCeEE
Q 028806 5 ADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFS-EEELTSVVL-M-KNGRKVVCGS------------------QSGTVL 62 (203)
Q Consensus 5 p~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~------------------~d~~i~ 62 (203)
+||++|+.... ++.|.+.|+.+.++...++-. ...+..+++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 47888766554 567999999999887755422 245788887 5 8999998884 245788
Q ss_pred EEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCC--------------------------------------c
Q 028806 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG--------------------------------------L 103 (203)
Q Consensus 63 ~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~--------------------------------------~ 103 (203)
+.|..+. +....+.- .. ....+ ++|+|+++++.+.+. .
T Consensus 179 vID~~t~-~v~~qI~V-gg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 179 AVDADKW-EVAWQVLV-SG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEETTTT-EEEEEEEE-SS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEECCCC-eEEEEEEe-CC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 8998753 44444432 23 33445 799999988877542 3
Q ss_pred EEEEEccC--Cce-eeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcc
Q 028806 104 ISLVGILP--NRI-IQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDIL 156 (203)
Q Consensus 104 i~~~d~~~--~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (203)
|.+.|..+ ++. +..+.... ...++.++|||+++++++ .+.+|.++|+.+..
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 310 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred EEEEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence 67777776 444 44554442 457899999999988776 68899999998763
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-06 Score=70.60 Aligned_cols=131 Identities=11% Similarity=0.055 Sum_probs=89.3
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCc----------------------------cc-----------eEEEEEeeCC
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE----------------------------EE-----------LTSVVLMKNG 49 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~----------------------------~~-----------v~~~~~~~~~ 49 (203)
.|+.++.+|.++++|..+++++....... .. -..++++|+.
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~ 400 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT 400 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence 67888899999999999998874332110 00 0126788887
Q ss_pred CEEEEecC---------------------------------------------CCeEEEEEcCCccccceeeeccCCCce
Q 028806 50 RKVVCGSQ---------------------------------------------SGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 50 ~~l~~~~~---------------------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
.++++... ++.|+.||+.+. +.+-.+.. +....
T Consensus 401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~-~~~~~ 478 (689)
T 1yiq_A 401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ-QAAWEVPY-VTIFN 478 (689)
T ss_dssp TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT-EEEEEEEE-SSSCC
T ss_pred CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC-CeEeEccC-CCCcc
Confidence 77776422 377999999764 44444443 33222
Q ss_pred eEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEE
Q 028806 85 DALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSI 141 (203)
Q Consensus 85 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~ 141 (203)
...+...+.+++.++.|+.|+.||.++|+.+..++........-+.|..+|+ |+++.
T Consensus 479 ~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 479 GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 3346778889999999999999999999999888765432223467778886 44443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=4.5e-05 Score=55.15 Aligned_cols=151 Identities=5% Similarity=-0.119 Sum_probs=91.6
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~ 76 (203)
|+++|++..| ++-...+.|.++++........+.........++++|++..|+.+.. .+.|..+++.. .....+
T Consensus 84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg--~~~~~~ 161 (267)
T 1npe_A 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TNRRIL 161 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CCCEEE
T ss_pred EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC--CCcEEE
Confidence 3567765544 44455678999988654322222222245789999997666655543 36888888752 333333
Q ss_pred e-ccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 77 V-GLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 77 ~-~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
. . .......+ ++|++..|+.+. ..+.|.++++........+... . ....++.. +..|+.+. ..+.|.++|.
T Consensus 162 ~~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 162 AQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp ECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred EEC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeC
Confidence 2 2 23445667 899877776655 4678999998754433333322 2 34566654 45555555 5688999998
Q ss_pred CCcccC
Q 028806 153 DDILKG 158 (203)
Q Consensus 153 ~~~~~~ 158 (203)
.++...
T Consensus 237 ~~g~~~ 242 (267)
T 1npe_A 237 AISKEM 242 (267)
T ss_dssp TTTEEE
T ss_pred CCCCce
Confidence 876543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-06 Score=70.72 Aligned_cols=151 Identities=7% Similarity=-0.013 Sum_probs=87.7
Q ss_pred ccc-ccCCEEEEEcC-C----CeEEEEEcCCC-eEEEeecCCccceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCc
Q 028806 2 TFA-ADAMKLLGTSG-D----GTLSVCNLRKN-TVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYF 69 (203)
Q Consensus 2 ~~s-p~~~~l~~~~~-d----~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~ 69 (203)
+|| |||++||.+.. + ..|+++++.++ +.+.. .-......++|+||++.|+....+ ..|+++++.+.
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~ 257 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL 257 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence 589 99998886533 2 35999999988 63211 001123468899999888776654 35777787643
Q ss_pred ccc-ceeeeccCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCc-ee--eeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 70 KDC-SDRFVGLSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNR-II--QPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 70 ~~~-~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~i~~~d~~~~~-~~--~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
... ...+..........+ |+|+|++|+.... ...|+++|+.++. .. ..+........+++.|+..+.+++..
T Consensus 258 ~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t 337 (751)
T 2xe4_A 258 QSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILT 337 (751)
T ss_dssp GGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEE
T ss_pred chhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEe
Confidence 211 122221022334455 8999999887653 3458888987652 12 33322222255666665444444444
Q ss_pred eCC----CcEEEEeCCC
Q 028806 142 SHD----SMLKLWDLDD 154 (203)
Q Consensus 142 ~~d----~~i~iwd~~~ 154 (203)
..+ ..|..+++.+
T Consensus 338 ~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 338 NEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CTTTCTTCEEEEEETTS
T ss_pred CCCCCCCcEEEEEcCCC
Confidence 333 3577777764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-05 Score=59.98 Aligned_cols=146 Identities=8% Similarity=-0.018 Sum_probs=94.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCC---------ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFS---------EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
.+..|++++.++.|..+|..+++.+...... ...+.+. ...++..+++++.++.|+.+|..+. ..+-..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG-~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDG-TVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTC-CEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCC-CEEEEE
Confidence 4567788888899999999999887666542 1223222 2234567778888999999998754 444333
Q ss_pred eccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCce-----EEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 77 VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPI-----ESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. .......... .+..+++++.++.|..+|..+|+.+........ .. ...... +..++.++.++.|..+|
T Consensus 130 ~~-~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KV-AGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMP-SLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp EC-SSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC------CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eC-CCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC-ceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 33 2221111122 245788888899999999999998877654321 10 112222 45677788889999999
Q ss_pred CCCcccC
Q 028806 152 LDDILKG 158 (203)
Q Consensus 152 ~~~~~~~ 158 (203)
..++...
T Consensus 205 ~~tG~~~ 211 (376)
T 3q7m_A 205 MEQGQMI 211 (376)
T ss_dssp TTTCCEE
T ss_pred CCCCcEE
Confidence 9877653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-05 Score=59.11 Aligned_cols=149 Identities=9% Similarity=-0.041 Sum_probs=92.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-C------------------CccceEEEEEee-CCCEEEEecCCCe
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-F------------------SEEELTSVVLMK-NGRKVVCGSQSGT 60 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~------------------~~~~v~~~~~~~-~~~~l~~~~~d~~ 60 (203)
++|++++++++++..++.|..|+..++....... . ....+..+++.+ +++ |+++...+.
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~ 102 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYH 102 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTE
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCC
Confidence 4678888877788888999999987654432110 0 013578899997 555 454544455
Q ss_pred EEEEEcCCccccceeeec----cCCCceeEE-Eee-CCCEEEEEcC-----------------CCcEEEEEccCCceeee
Q 028806 61 VLLYSWGYFKDCSDRFVG----LSPNSVDAL-LKL-DEDRVITGSE-----------------NGLISLVGILPNRIIQP 117 (203)
Q Consensus 61 i~~wd~~~~~~~~~~~~~----~~~~~v~~~-~~~-~~~~l~~~~~-----------------d~~i~~~d~~~~~~~~~ 117 (203)
+..+|... + .+..+.. ........+ +.+ +|.+.++-.. .+.|..||..+++....
T Consensus 103 i~~~d~~~-g-~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 103 LSVVGSEG-G-HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp EEEECTTC-E-ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred EEEEeCCC-C-EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 88887652 2 2222221 011234566 788 8876665432 36688888766654332
Q ss_pred eccCCCCceEEEEEeCCCCeEEEE-eCCCcEEEEeCCC
Q 028806 118 IAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWDLDD 154 (203)
Q Consensus 118 ~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~iwd~~~ 154 (203)
.... . ....++++|++++|+.+ ...+.|.+|++.+
T Consensus 181 ~~~~-~-~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 181 LKEL-H-VPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEE-S-CCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred ccCC-c-cCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 2222 2 34679999999876655 4568899999875
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-05 Score=66.52 Aligned_cols=153 Identities=8% Similarity=0.043 Sum_probs=100.6
Q ss_pred cccccCCEEEEEcCCC-------------------eEEEEEcCCCeEEEeecC--Cc-------cceEEEEEeeCCC---
Q 028806 2 TFAADAMKLLGTSGDG-------------------TLSVCNLRKNTVQTRSEF--SE-------EELTSVVLMKNGR--- 50 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~-------------------~i~vw~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~--- 50 (203)
++.|+..+++.++.++ .|..+|..+++.+..++. |. .+.....+..+++
T Consensus 236 a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~ 315 (668)
T 1kv9_A 236 AYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRK 315 (668)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEE
Confidence 3556777888877665 499999999998877753 21 2333333444665
Q ss_pred EEEEecCCCeEEEEEcCCccccceeeeccCC------------Cc------------------------eeEE-EeeCCC
Q 028806 51 KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP------------NS------------------------VDAL-LKLDED 93 (203)
Q Consensus 51 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~------------~~------------------------v~~~-~~~~~~ 93 (203)
.++.++.+|.++++|..+ ++.+..... .. .+ -..+ ++|+..
T Consensus 316 ~v~~~~~~G~l~~lD~~t-G~~l~~~~~-~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTN-GKLISAEKF-GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEECCTTSEEEEEETTT-CCEEEEEES-SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEECCCCEEEEEECCC-CCEeccccc-cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 688899999999999875 343321110 00 00 0012 566555
Q ss_pred EEEEE------------------------------------cCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe
Q 028806 94 RVITG------------------------------------SENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 94 ~l~~~------------------------------------~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 137 (203)
+++.. ..+|.|..||+.+++.+.....+. +.....+...+.+
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~ 471 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNL 471 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTE
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCE
Confidence 55431 123779999999999987776542 3444455567788
Q ss_pred EEEEeCCCcEEEEeCCCcccC
Q 028806 138 LGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+++++.|+.|++||.++++..
T Consensus 472 vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 472 VFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEE
T ss_pred EEEECCcccchhhhhhcChhh
Confidence 889999999999999988654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-06 Score=65.84 Aligned_cols=125 Identities=11% Similarity=-0.152 Sum_probs=87.3
Q ss_pred eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec----------CCCeEEEEEcCCccccceeeeccC-------
Q 028806 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSWGYFKDCSDRFVGLS------- 80 (203)
Q Consensus 18 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~wd~~~~~~~~~~~~~~~------- 80 (203)
+|.++|..+++.+.++.....+ .+.++|++++++++. .++.|.+||+.+ ...+..+.. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v-~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIEL-PDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEE-TTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEEC-CCcccccc
Confidence 8889999999999888765555 799999999988886 368899999985 455666543 3
Q ss_pred CCceeEE-EeeCCCEEEEEcC--CCcEEE--EEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEeCCCcEEEEeCCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSE--NGLISL--VGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~--d~~i~~--~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~iwd~~~ 154 (203)
......+ ++|+|++++++.. ...|.+ +|+.+ +..+... + . +.+.|++. .+++.+.|+.+.+.++.+
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S-C---FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S-C---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C-c---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 1234456 8999999999875 456888 89877 4444332 1 1 12334443 344555677777777765
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.3e-05 Score=55.66 Aligned_cols=134 Identities=12% Similarity=0.051 Sum_probs=88.9
Q ss_pred ccCCEEEE-EcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cCCC
Q 028806 5 ADAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPN 82 (203)
Q Consensus 5 p~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~ 82 (203)
++++.|.. ...++.+.+||..+.+.+.++..... ...+.+++..|+.+...+.|.++|..+. ..+..+.. ....
T Consensus 94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~ 169 (262)
T 3nol_A 94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGE 169 (262)
T ss_dssp EETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTE
T ss_pred EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCc
Confidence 34555544 44689999999999998888875332 2344467887877777788999998753 44444432 0122
Q ss_pred c---eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-----------CCceEEEEEeCCCCeEEEEeC
Q 028806 83 S---VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-----------EYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 83 ~---v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----------~~~i~~i~~~~~~~~l~~~~~ 143 (203)
+ +..+ +. +|...+..-....|.+.|..+++.+..+.... ..-...|+|+|+++.|++.+.
T Consensus 170 ~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 170 ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 3 3345 44 67555444457889999999999887765420 114578999998887776663
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.39 E-value=4.1e-05 Score=58.10 Aligned_cols=136 Identities=12% Similarity=0.138 Sum_probs=90.6
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..++.++.++.|..+|..+++.+..... .....+.. ++..++.++.++.+..+|..+. ..+..........+..
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~ 313 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLTS 313 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCCC
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCcccC
Confidence 45677777889999999999988776653 22333433 4667778888899999998754 4333332101112222
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEE-EEEeCCCCeEEEEeCCCcEEEEe
Q 028806 87 LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIES-LALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 87 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. ..+..|++++.+|.|.++|..+++.+........ .+.. ... .+..|+.++.+|.|+.|+
T Consensus 314 ~~-~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~-~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 314 PV-LYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS-GFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CE-EETTEEEEECTTSEEEEEETTTCCEEEEEECCTT-CBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CE-EECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-cceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 21 2356888899999999999999998877765322 2322 222 245788888899999986
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-05 Score=60.05 Aligned_cols=136 Identities=18% Similarity=0.086 Sum_probs=91.2
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA 86 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 86 (203)
+..|..++.++.|..++.. ++.......+...+.++...+++. ++.++.++.|..||.. +.....+.. ....+.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~-~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFKT-NDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT--SCEEEEEEC-SSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEec-CCCceee
Confidence 3456777778999999988 766666555445556666666666 5556777899999976 444444444 4445555
Q ss_pred E-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 87 L-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 87 ~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
+ ..+++.++ .++ +.|..+| .+++.+........ .+.++...+++. |..++.++.|..++..
T Consensus 182 ~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~-~~~~~~~~~~g~-l~v~t~~~gl~~~~~~ 243 (330)
T 3hxj_A 182 ASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYW-TVTRPAISEDGT-IYVTSLDGHLYAINPD 243 (330)
T ss_dssp CEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSC-CCSCCEECTTSC-EEEEETTTEEEEECTT
T ss_pred eEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCc-ceeceEECCCCe-EEEEcCCCeEEEECCC
Confidence 5 45666644 444 7789999 77777766655433 577888888775 4556667788888753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.3e-05 Score=54.30 Aligned_cols=133 Identities=11% Similarity=0.012 Sum_probs=87.6
Q ss_pred ccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cCCC
Q 028806 5 ADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPN 82 (203)
Q Consensus 5 p~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~ 82 (203)
++++.| +....++.+.+||..+.+.+.++...... +.+ .+++..|+.+..++.|.++|..+. +.+..+.. ....
T Consensus 103 ~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-wGL--t~Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~ 178 (268)
T 3nok_A 103 SDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG-WGL--CYWNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQ 178 (268)
T ss_dssp ECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC-CCE--EEETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTE
T ss_pred EeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce-eEE--ecCCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCc
Confidence 344433 44556899999999999998888753322 333 467888888877899999998753 44444432 0222
Q ss_pred c---eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC------------CCCceEEEEEeCCCCeEEEEe
Q 028806 83 S---VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 83 ~---v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------------~~~~i~~i~~~~~~~~l~~~~ 142 (203)
+ +..+ |. +|...+..-....|.+.|..+++.+..+... ...-...|+|+|++..|++.+
T Consensus 179 ~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 179 PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 2 3344 33 6755544445788999999999988776432 112467899999876665555
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-05 Score=59.24 Aligned_cols=140 Identities=11% Similarity=0.011 Sum_probs=87.7
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
+++.+++. + +.|..++ .+++...........+.++...+++.. +.++.++.+..++.. +..+..+.. ....+
T Consensus 186 ~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~--g~~~~~~~~-~~~~~ 257 (330)
T 3hxj_A 186 KDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINPD--GTEKWRFKT-GKRIE 257 (330)
T ss_dssp TTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECTT--SCEEEEEEC-SSCCC
T ss_pred CCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECCC--CCEeEEeeC-CCCcc
Confidence 45554443 3 7788999 676666666555556777787777654 445567778888743 344444443 33333
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..+ ..+++ .|+.++.++.|..+|. +++.+..+... ...+.++...++++ |..++.+|.+++.......
T Consensus 258 ~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~-~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 258 SSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG-SWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp SCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS-SCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred ccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC-CccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 334 34344 5677788888999995 67776666544 22566777777775 5667889999988765443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00017 Score=51.48 Aligned_cols=132 Identities=9% Similarity=0.024 Sum_probs=86.6
Q ss_pred CCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cCCCc-
Q 028806 7 AMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNS- 83 (203)
Q Consensus 7 ~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~- 83 (203)
++.| +....++.+.+||..+.+.+.++...... +.+ .+++..|+.+..++.|.++|..+. ..+..+.. .+..+
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~ 149 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPL 149 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEEC
T ss_pred CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCccc
Confidence 4444 44456899999999999998888754332 334 467777777777889999998753 44444432 02222
Q ss_pred --eeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC------------CCCceEEEEEeCCCCeEEEEe
Q 028806 84 --VDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEH------------SEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 84 --v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------------~~~~i~~i~~~~~~~~l~~~~ 142 (203)
+..+-..+|..++..-....|.+.|..+++.+..+... ...-...|+++|++..|++.+
T Consensus 150 ~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 150 DNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 33341236665544445778999999999988776422 112457899999887766665
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00032 Score=50.58 Aligned_cols=153 Identities=8% Similarity=0.046 Sum_probs=97.1
Q ss_pred CcccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecC-CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--cceee
Q 028806 1 MTFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~ 76 (203)
|+|+|+++.| ++...++.|...|.. ++.+..+.- ...-...|++.+++.++++.-.++.+.++++...+. .+...
T Consensus 32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~ 110 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKI 110 (255)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeee
Confidence 4788887655 456778899999988 777766632 224577889888887777766678899998864332 11111
Q ss_pred e-----ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc---CCceeeeec-------cCCCCceEEEEEeCCCCe-EE
Q 028806 77 V-----GLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL---PNRIIQPIA-------EHSEYPIESLALSHDRKF-LG 139 (203)
Q Consensus 77 ~-----~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~---~~~~~~~~~-------~~~~~~i~~i~~~~~~~~-l~ 139 (203)
. .........+ ++|.++.|+++.......+|.+. ....+..+. .+ -..+.+++++|.... ++
T Consensus 111 ~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~-~~d~S~l~~dp~tg~lli 189 (255)
T 3qqz_A 111 KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT-LDDVSGAEFNQQKNTLLV 189 (255)
T ss_dssp ECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC-SSCCCEEEEETTTTEEEE
T ss_pred ccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc-cCCceeEEEcCCCCeEEE
Confidence 1 0022345677 89999888888776666666654 111122111 11 125788999996554 44
Q ss_pred EEeCCCcEEEEeCCCc
Q 028806 140 SISHDSMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~~ 155 (203)
.....+.|.++|....
T Consensus 190 LS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 190 LSHESRALQEVTLVGE 205 (255)
T ss_dssp EETTTTEEEEECTTCC
T ss_pred EECCCCeEEEEcCCCC
Confidence 4446677888886544
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00055 Score=50.92 Aligned_cols=150 Identities=9% Similarity=-0.041 Sum_probs=89.7
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCC----CeEEEeecCCccceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLL-GTSGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
++|++.++.|+ +-...+.|..+++.+ ......+...-.....+++.+.+..| ++-...+.|.++++.. ....
T Consensus 35 ~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g--~~~~ 112 (316)
T 1ijq_A 35 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 112 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEE
T ss_pred EEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC--CceE
Confidence 35777655554 445568898888875 22222232222345788988755544 4545678999999862 3333
Q ss_pred ee-eccCCCceeEE-EeeCCCEEEEEcCC--CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEE
Q 028806 75 RF-VGLSPNSVDAL-LKLDEDRVITGSEN--GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKL 149 (203)
Q Consensus 75 ~~-~~~~~~~v~~~-~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i 149 (203)
.+ .. .......+ +.|.+..|+.+... +.|..+++. |.....+....-.....++++|++..|+.+. ..+.|..
T Consensus 113 ~~~~~-~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 113 TLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp EEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEC-CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 33 32 33456777 78877766665543 678888875 3333333211122568999999877776655 5578999
Q ss_pred EeCCC
Q 028806 150 WDLDD 154 (203)
Q Consensus 150 wd~~~ 154 (203)
+++..
T Consensus 191 ~d~dg 195 (316)
T 1ijq_A 191 IDVNG 195 (316)
T ss_dssp EETTS
T ss_pred EecCC
Confidence 99865
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00015 Score=56.41 Aligned_cols=148 Identities=11% Similarity=0.091 Sum_probs=86.6
Q ss_pred Cccccc--CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC---C-eEEEEEcCCccccc-
Q 028806 1 MTFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS---G-TVLLYSWGYFKDCS- 73 (203)
Q Consensus 1 l~~sp~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~i~~wd~~~~~~~~- 73 (203)
|+|+|+ ...|+.+...+.|+.++..++...... ........++++++++++++-... . .+..++.. ....
T Consensus 144 vavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~--~~~~~ 220 (433)
T 4hw6_A 144 MMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA--SGFTE 220 (433)
T ss_dssp EEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG--GTTCC
T ss_pred EEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC--CCeec
Confidence 467774 344444433388999999887665443 344568899999999944443211 1 23333322 1111
Q ss_pred -eeeeccCCCceeEE-Eee-CCCEEEEEcCCCcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEe-CCCcEE
Q 028806 74 -DRFVGLSPNSVDAL-LKL-DEDRVITGSENGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSIS-HDSMLK 148 (203)
Q Consensus 74 -~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~ 148 (203)
..+.. ......+ ++| ++.++++-..++.|+.++..++.....+ ..........++|+|++++|+.+. ..+.|+
T Consensus 221 ~~~~~~--~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 221 RLSLCN--ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp EEEEEE--CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred cccccc--cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 11222 2223444 788 5665555556788999998877652222 222121235799999999666555 567899
Q ss_pred EEeCC
Q 028806 149 LWDLD 153 (203)
Q Consensus 149 iwd~~ 153 (203)
.++..
T Consensus 299 ~~~~d 303 (433)
T 4hw6_A 299 RVDYN 303 (433)
T ss_dssp EEEBC
T ss_pred EEeCC
Confidence 97764
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=9.5e-05 Score=59.66 Aligned_cols=136 Identities=13% Similarity=-0.001 Sum_probs=87.1
Q ss_pred eEEEEEcCCCeEEEeecCC----------ccceEEEEEeeCCC---EEEEecCCCeEEEEEcCCccccceeeeccCC---
Q 028806 18 TLSVCNLRKNTVQTRSEFS----------EEELTSVVLMKNGR---KVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP--- 81 (203)
Q Consensus 18 ~i~vw~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~---~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--- 81 (203)
.|..+|..+++.+..++.. ..++ -+...++++ .++.++.+|.++++|..+. +.+..+.. ..
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~~-~~~~~ 349 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENG-NLIVAEKV-DPAVN 349 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTC-CEEEEEES-STTCC
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCC-CEEeeecc-cCCcc
Confidence 6999999999988776532 1222 122334674 5677888999999998753 33332221 10
Q ss_pred ----------Cce--------------------------eEE-EeeCCCEEEEEc-------------------------
Q 028806 82 ----------NSV--------------------------DAL-LKLDEDRVITGS------------------------- 99 (203)
Q Consensus 82 ----------~~v--------------------------~~~-~~~~~~~l~~~~------------------------- 99 (203)
.++ ..+ ++|+..++++.+
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 011 122 566666666543
Q ss_pred ------------CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 100 ------------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 100 ------------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..+.|..||+.+++.+..+.... .+....+...+..++.++.|+.|+.||.++++..
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 34789999999999887775442 2333333345667778889999999999988764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00012 Score=54.51 Aligned_cols=151 Identities=9% Similarity=0.023 Sum_probs=95.9
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEe-ecC----C--ccceEEEEE---eeCCCEEEEecC-------------
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTR-SEF----S--EEELTSVVL---MKNGRKVVCGSQ------------- 57 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~l~~~~~------------- 57 (203)
+|.+... ++++.-..++|..|+...+..... +.. . ...+..|.| .|+++++++...
T Consensus 19 ~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g 98 (334)
T 2p9w_A 19 IYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG 98 (334)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred cCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence 5766444 445555789999999886543332 322 1 124688999 588777775432
Q ss_pred CCeEEEEEcC---Cccccceeee--ccC---------C-CceeEE-EeeCCCEEEEEcCC-CcEEEEEccCCceeeeecc
Q 028806 58 SGTVLLYSWG---YFKDCSDRFV--GLS---------P-NSVDAL-LKLDEDRVITGSEN-GLISLVGILPNRIIQPIAE 120 (203)
Q Consensus 58 d~~i~~wd~~---~~~~~~~~~~--~~~---------~-~~v~~~-~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~ 120 (203)
+..|..||+. +. ..+.... ... . .....+ ..++|+..++++.. +.|..++... +.+..+..
T Consensus 99 ~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~~~ 176 (334)
T 2p9w_A 99 ASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVSTFAW 176 (334)
T ss_dssp CCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEEEEEE
T ss_pred CCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEeeeee
Confidence 5779999987 43 2222221 100 1 124556 68899999988887 8877777543 33322211
Q ss_pred -----CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 121 -----HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 121 -----~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
........|+++|++..|++....+.|..+|+.+
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 1111356899999999888887799999999873
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00023 Score=56.22 Aligned_cols=150 Identities=7% Similarity=0.085 Sum_probs=89.4
Q ss_pred Ccccc-cCCEEEEE-cCCCeEEEEEcCCCeEEEeecCC---ccceEEEEE-------eeCCCEEEEecCCC-------eE
Q 028806 1 MTFAA-DAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFS---EEELTSVVL-------MKNGRKVVCGSQSG-------TV 61 (203)
Q Consensus 1 l~~sp-~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~d~-------~i 61 (203)
|+|+| ++..|+.+ ...+.|+++|+.++.....+... ......|+| ++++..|+++...+ .+
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V 223 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSV 223 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEE
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceE
Confidence 46787 34444444 44467999999887765544332 235889999 99999777666543 25
Q ss_pred EEEEcCCccccc-----eeeeccCCCceeEE-EeeCCCE-EEEEcCCCcEEEEEcc-------CCce-----------ee
Q 028806 62 LLYSWGYFKDCS-----DRFVGLSPNSVDAL-LKLDEDR-VITGSENGLISLVGIL-------PNRI-----------IQ 116 (203)
Q Consensus 62 ~~wd~~~~~~~~-----~~~~~~~~~~v~~~-~~~~~~~-l~~~~~d~~i~~~d~~-------~~~~-----------~~ 116 (203)
.+++....+... ..+.. ...+ ..+ .+|++.. +++-...+.|..+|+. ++.. ..
T Consensus 224 ~~i~r~~~G~~~~~~~~~~v~~-~~~p-~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~ 301 (496)
T 3kya_A 224 YIIKRNADGTFDDRSDIQLIAA-YKQC-NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFK 301 (496)
T ss_dssp EEEECCTTSCCSTTSCEEEEEE-ESCC-CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEE
T ss_pred EEEecCCCCceeecccceeecc-CCCc-eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccc
Confidence 566533212221 22322 2323 344 7885444 4455567889999997 5543 11
Q ss_pred e-eccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 117 P-IAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 117 ~-~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
. +........+.|+|+|++++|+.+. ....|+.++.
T Consensus 302 ~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 302 QLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 1 2111122457899999999655554 5677888654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0001 Score=54.83 Aligned_cols=135 Identities=13% Similarity=0.032 Sum_probs=79.9
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEe-cCCCeEEEEEcCCcc-ccceeeeccCCCceeEE-EeeCCC
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFK-DCSDRFVGLSPNSVDAL-LKLDED 93 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~ 93 (203)
+.|..|+..+++...... .-.....++|+|+++.|+++ ...+.|.+|++.... .....+.. ..+ ...+ +.++|+
T Consensus 165 g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGH 241 (322)
T ss_dssp EEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSC
T ss_pred ceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCC
Confidence 668888877665432221 12335678999999866655 556899999986311 11122222 223 5666 788998
Q ss_pred EEEEEcC----------CCcEEEEEccCCceeeeeccCCC---CceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 94 RVITGSE----------NGLISLVGILPNRIIQPIAEHSE---YPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 94 ~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
++++... .+.|..+|. .++.+..+..... ..+.++++ .+++.+++....+.|.++++....
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred EEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 6666544 456888886 4666666644321 14566666 355555555577889999886433
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00062 Score=51.41 Aligned_cols=151 Identities=12% Similarity=0.028 Sum_probs=90.8
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeee-
Q 028806 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
|+|++..+.|+ +-...+.|+.+++........+.........+++.+.+..| ++-...+.|.+.++.. .....+.
T Consensus 78 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~ 155 (349)
T 3v64_C 78 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW 155 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC--CceEEEEe
Confidence 35666555444 33456778888877654333333223345678888755544 5555578899999863 3333332
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcC-C-CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSE-N-GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
. .......+ ++|.+..|+.... . +.|..+++... ....+..........++++|++..|+.+. ..+.|..+++.
T Consensus 156 ~-~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 156 Q-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp T-TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 2 33456777 7887666665544 4 67888887643 33333221122568899999777766555 56789999886
Q ss_pred Cc
Q 028806 154 DI 155 (203)
Q Consensus 154 ~~ 155 (203)
..
T Consensus 234 G~ 235 (349)
T 3v64_C 234 GS 235 (349)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00048 Score=50.85 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=85.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC--CeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|+++++++-...+.|..|+.... ....+.. ...+..+++.++++++++.... ..|..++... +.. ..+..
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~-~~~~~ 112 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTV-ETLLT 112 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCE-EEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeE-EEEEe
Confidence 468889887777767889999997754 3333322 3568899999999866654332 2466666543 232 22222
Q ss_pred c-CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce-eeee-------cc-CCCCceEEEEEeCCCCeEEEEe-CCCc
Q 028806 79 L-SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI-IQPI-------AE-HSEYPIESLALSHDRKFLGSIS-HDSM 146 (203)
Q Consensus 79 ~-~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~-------~~-~~~~~i~~i~~~~~~~~l~~~~-~d~~ 146 (203)
. .......+ ..+.+..+++-...+.|+++|...+.. +... .. ..-.....+ +|++.+|+.+. ..+.
T Consensus 113 ~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~ 190 (306)
T 2p4o_A 113 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKML 190 (306)
T ss_dssp CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTE
T ss_pred CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCE
Confidence 0 11122333 334444444444578898888765421 1100 00 101123455 88887766555 5678
Q ss_pred EEEEeCCC
Q 028806 147 LKLWDLDD 154 (203)
Q Consensus 147 i~iwd~~~ 154 (203)
|..|++..
T Consensus 191 I~~~~~~~ 198 (306)
T 2p4o_A 191 LLRIPVDS 198 (306)
T ss_dssp EEEEEBCT
T ss_pred EEEEEeCC
Confidence 99999874
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=6.9e-05 Score=60.46 Aligned_cols=128 Identities=10% Similarity=-0.027 Sum_probs=82.9
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCc-------------cce--------------------------EEEEEeeCC
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSE-------------EEL--------------------------TSVVLMKNG 49 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~~ 49 (203)
.++.++.+|.++++|..+++.+....... .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 56778889999999999998876554211 111 235677877
Q ss_pred CEEEEec-------------------------------------CCCeEEEEEcCCccccceeeeccCCCceeEE-EeeC
Q 028806 50 RKVVCGS-------------------------------------QSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLD 91 (203)
Q Consensus 50 ~~l~~~~-------------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~ 91 (203)
.+|++.. .++.|..||+.+. +.+-.+.. . ..+... +...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG-~~~W~~~~-~-~~~~~~~~~t~ 474 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG-KAKWTKWE-K-FAAWGGTLYTK 474 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC-CEEEEEEE-S-SCCCSBCEEET
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC-CEEEEecC-C-CCccceeEEEC
Confidence 7776643 2468888888753 44433432 2 222323 4455
Q ss_pred CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 92 EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 92 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
+..+++++.++.|+.+|..+|+.+..+.......-..+.+..+|+.++
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 677888999999999999999999888655321112244556776444
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0011 Score=51.03 Aligned_cols=151 Identities=10% Similarity=-0.048 Sum_probs=90.2
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCC----eEEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGT-SGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
|+|++....|+.+ ...+.|+.+++... .....+.........+++.+.+ +++++-...+.|.+.++.. ....
T Consensus 117 l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g--~~~~ 194 (400)
T 3p5b_L 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 194 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT--CSEE
T ss_pred EeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC--CceE
Confidence 3566655544433 44577777777542 1222233234457789998744 4445555678899888862 3333
Q ss_pred e-eeccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEE
Q 028806 75 R-FVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKL 149 (203)
Q Consensus 75 ~-~~~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i 149 (203)
. +.. .......+ +.|.+.+|+.... .+.|...++........+..... ....|+++|++..|+.+. ..+.|..
T Consensus 195 ~l~~~-~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~-~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 195 TLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp EEEEC-SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEeC-CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC-ceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 3 332 33446777 7887777766553 36788888764333322332212 578999999887777665 5678999
Q ss_pred EeCCCc
Q 028806 150 WDLDDI 155 (203)
Q Consensus 150 wd~~~~ 155 (203)
+|+...
T Consensus 273 ~d~dG~ 278 (400)
T 3p5b_L 273 IDVNGG 278 (400)
T ss_dssp EETTSC
T ss_pred EeCCCC
Confidence 988654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00046 Score=52.89 Aligned_cols=151 Identities=11% Similarity=0.005 Sum_probs=91.2
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceee-e
Q 028806 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRF-V 77 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~-~ 77 (203)
|+|++.++.|+ +-...+.|+.+++........+.........+++.+.+..| ++-...+.|.+.++.. .....+ .
T Consensus 121 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~~~l~~ 198 (386)
T 3v65_B 121 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW 198 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS--CSCEEEEC
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC--CceEEeec
Confidence 35666555444 44456788888887654433333333345678888755554 4445567888888752 332333 2
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcC-C-CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSE-N-GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
. .......+ +.|.+..|+.+.. . +.|..+++............ ......|+|+|++..|+.+. ..+.|..+++.
T Consensus 199 ~-~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 199 Q-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp S-SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred C-CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 2 33456777 7887777666554 3 67888887643332222222 22468899998777666555 56789999886
Q ss_pred Cc
Q 028806 154 DI 155 (203)
Q Consensus 154 ~~ 155 (203)
..
T Consensus 277 G~ 278 (386)
T 3v65_B 277 GS 278 (386)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00024 Score=59.21 Aligned_cols=149 Identities=9% Similarity=0.014 Sum_probs=80.6
Q ss_pred CcccccCCEEEEEcCC-----CeEEEEEcCCCe--EEEeec-CCccceEEEEEeeCCCEEEEecC---CCeEEEEEcCCc
Q 028806 1 MTFAADAMKLLGTSGD-----GTLSVCNLRKNT--VQTRSE-FSEEELTSVVLMKNGRKVVCGSQ---SGTVLLYSWGYF 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d-----~~i~vw~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~ 69 (203)
++|+|||+.|+....+ ..|+++++.++. ....+. ........+.|+||+++|+..+. ...|+++|+...
T Consensus 226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 4799999988777654 368888887653 112222 22234668899999998876552 346888888643
Q ss_pred cccc--eeeeccCCCceeEE-EeeCCCEEEEEcC-C----CcEEEEEccCC-ceee-eeccCCCCceEEEEEeCCCCeE-
Q 028806 70 KDCS--DRFVGLSPNSVDAL-LKLDEDRVITGSE-N----GLISLVGILPN-RIIQ-PIAEHSEYPIESLALSHDRKFL- 138 (203)
Q Consensus 70 ~~~~--~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d----~~i~~~d~~~~-~~~~-~~~~~~~~~i~~i~~~~~~~~l- 138 (203)
.... ..+........+.+ |+ .|..|+..+. + ..|..+++.++ .... .+.......+..+.+ .+..|
T Consensus 306 ~~~~~~~~l~~~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv 382 (751)
T 2xe4_A 306 NAHNTLEIVRPREKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLV 382 (751)
T ss_dssp TTCCCEEESSCCCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEE
T ss_pred CCCceeEEeecCCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEE
Confidence 1122 33332023333433 23 3666555443 2 25666776542 2222 232222213444444 44454
Q ss_pred EEEeCCCc--EEEEeC
Q 028806 139 GSISHDSM--LKLWDL 152 (203)
Q Consensus 139 ~~~~~d~~--i~iwd~ 152 (203)
++...++. |.++++
T Consensus 383 ~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 383 VAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EEEEeCCEEEEEEEec
Confidence 45556665 555664
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00017 Score=58.31 Aligned_cols=82 Identities=13% Similarity=0.089 Sum_probs=52.5
Q ss_pred CCeEEEEEcCCccccceeeeccCCCceeE-EEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC
Q 028806 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVDA-LLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 58 d~~i~~wd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
.+.|..||+.+. +.+-.... .. +... .....+.+++.++.|+.|+.||.++|+.+..++......-.-+.|..+|+
T Consensus 465 ~G~l~A~D~~tG-~~~W~~~~-~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 465 VGSLRAMDPVSG-KVVWEHKE-HL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTTC-CEEEEEEE-SS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cceEEEEECCCC-CEEEEecC-CC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 577888888754 33333332 22 2222 23445778888999999999999999999888765331112366777886
Q ss_pred -eEEEEe
Q 028806 137 -FLGSIS 142 (203)
Q Consensus 137 -~l~~~~ 142 (203)
|+++.+
T Consensus 542 qYv~~~~ 548 (582)
T 1flg_A 542 QYLGVTV 548 (582)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 454433
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00074 Score=48.68 Aligned_cols=150 Identities=9% Similarity=0.120 Sum_probs=90.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---EEEeec------CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC--c
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSE------FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY--F 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~ 69 (203)
|++.+++.++++.-.++.+.++.+.... .+.... ........|+|+|.+..|+++.......+|.+.. .
T Consensus 75 Ia~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~ 154 (255)
T 3qqz_A 75 IEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS 154 (255)
T ss_dssp EEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC
T ss_pred eEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc
Confidence 3566777776766667889998876432 122221 1234568999999998888777655555555531 1
Q ss_pred cccceeee------ccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCC--------CceEEEEEeC
Q 028806 70 KDCSDRFV------GLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSE--------YPIESLALSH 133 (203)
Q Consensus 70 ~~~~~~~~------~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--------~~i~~i~~~~ 133 (203)
...+..+. ......+..+ ++|. +++++.+.....|.++|.. |+.+..+....+ ..-..|+|.+
T Consensus 155 ~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~ 233 (255)
T 3qqz_A 155 SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA 233 (255)
T ss_dssp SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC
Confidence 11122221 0022346777 7875 4555566667788889865 555555433311 1457899999
Q ss_pred CCCeEEEEeCCCcEEEEeC
Q 028806 134 DRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 134 ~~~~l~~~~~d~~i~iwd~ 152 (203)
+|+.. ..+.-+.+++|.-
T Consensus 234 ~G~ly-IvsE~n~~y~f~~ 251 (255)
T 3qqz_A 234 SGNIY-IVSEPNRFYRFTP 251 (255)
T ss_dssp TCCEE-EEETTTEEEEEEC
T ss_pred CCCEE-EEcCCceEEEEEe
Confidence 99844 4466666776643
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00019 Score=57.99 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=40.9
Q ss_pred CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 101 NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 101 d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.|.|..||+.+++.+....... ++..-.....+..++.++.|+.|+.||.++++..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 5789999999999887765442 2222222234667888999999999999988765
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0018 Score=48.76 Aligned_cols=143 Identities=13% Similarity=0.162 Sum_probs=92.8
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeC----CC---EEEEecC---CCeEEEEEcCCcccccee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN----GR---KVVCGSQ---SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---d~~i~~wd~~~~~~~~~~ 75 (203)
...+++.....+.|.+||+ +++.++.+.. ++++.+..-|+ ++ +++++.. +++|.+|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3455666677789999999 7888887754 56777777663 22 2333333 578999988422223333
Q ss_pred eec------cCCCceeEE--E-eeC-CC-EEEEEcCCCcEEEEEcc-------CCceeeeeccCCCCceEEEEEeCCCCe
Q 028806 76 FVG------LSPNSVDAL--L-KLD-ED-RVITGSENGLISLVGIL-------PNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 76 ~~~------~~~~~v~~~--~-~~~-~~-~l~~~~~d~~i~~~d~~-------~~~~~~~~~~~~~~~i~~i~~~~~~~~ 137 (203)
+.. .....+..+ + +|. +. ++++...+|.+..|.+. +++.+.++.... .+..+...+...+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~ 193 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGR 193 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCe
Confidence 311 011233434 3 564 44 57777788999999883 335566666653 5888999998899
Q ss_pred EEEEeCCCcEEEEeCC
Q 028806 138 LGSISHDSMLKLWDLD 153 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~ 153 (203)
|+.+-.+..|..++.+
T Consensus 194 Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEETTTEEEEEECS
T ss_pred EEEecccceEEEEeCC
Confidence 9999988777666644
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00048 Score=55.84 Aligned_cols=56 Identities=14% Similarity=-0.051 Sum_probs=39.7
Q ss_pred CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 101 NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 101 d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.|.|..||+.+++.+....... ++..-.+...+..++.++.|+.|+.||.++++..
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 4678999999999887765331 2222122335667778899999999999988754
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00024 Score=58.41 Aligned_cols=151 Identities=19% Similarity=0.173 Sum_probs=95.2
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc----cceEEEEEeeCCCEEEEecC------CCeEEEEEcCCcccccee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE----EELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~ 75 (203)
.+..|+.++.++.|..+|..+|+.+....... ..+.+.-.-.++ .++++.. ++.|+.+|..+. +.+-.
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG-~~~W~ 193 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTG-KLAWR 193 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTC-CEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCC-cEEEE
Confidence 35678888889999999999999887765421 111110011133 4555443 588999998754 43333
Q ss_pred eecc--CC---------------------------Cce-eEE-EeeCCCEEEEEcCCC-------------------cEE
Q 028806 76 FVGL--SP---------------------------NSV-DAL-LKLDEDRVITGSENG-------------------LIS 105 (203)
Q Consensus 76 ~~~~--~~---------------------------~~v-~~~-~~~~~~~l~~~~~d~-------------------~i~ 105 (203)
+... .. ..+ ..+ +.|....++.++.++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 3210 00 011 123 677788888887765 389
Q ss_pred EEEccCCceeeeeccCC-C-------CceEEEEEeCCCC---eEEEEeCCCcEEEEeCCCcccC
Q 028806 106 LVGILPNRIIQPIAEHS-E-------YPIESLALSHDRK---FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 106 ~~d~~~~~~~~~~~~~~-~-------~~i~~i~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+|+.+|+.+..++... . .+.....+..+|+ .|+.++.+|.++++|..+++..
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 99999999987775421 1 1233333344665 6888889999999999988754
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0017 Score=49.76 Aligned_cols=151 Identities=11% Similarity=-0.037 Sum_probs=87.2
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-C-CeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-S-GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.+..| ++-...+.|.+.++........+...-.....+++.|.+..|+.+.. . +.|..+++. +.....+..
T Consensus 165 avd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 242 (386)
T 3v65_B 165 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIAD 242 (386)
T ss_dssp EEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEE
Confidence 445443333 44444567777776644332233333356789999987766665543 3 678888875 333333322
Q ss_pred cCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
........+ ++|++..|+.+. ..+.|..+++........+..... ....|++ ..+..+++....+.|..++..++.
T Consensus 243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCS-SEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCC-CceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 033345677 888777776665 467799999764333333332222 4577887 344455555567788888855543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0024 Score=48.18 Aligned_cols=151 Identities=9% Similarity=-0.063 Sum_probs=87.5
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec-CC-CeEEEEEcCCccccceeeec
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS-QS-GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.+. ++++-...+.|.+.++........+...-.....+++.|.+..|+.+. .. +.|..+++.. .....+..
T Consensus 122 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG--~~~~~~~~ 199 (349)
T 3v64_C 122 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG--SGRRIIAD 199 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CSCEESCC
T ss_pred EEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC--CCcEEEEE
Confidence 4555443 334445567888888765433333333335578999999666555544 34 7788888752 33333321
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
........+ ++|++..|+.+.. .+.|..+++........+..... ....+++ ..+..+++-...+.|..++..++.
T Consensus 200 ~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 200 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-SEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-CceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 023445677 8987777776654 67799999764333322322222 4567777 344444555567788888754443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00098 Score=54.08 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=50.0
Q ss_pred CCeEEEEEcCCccccceeeeccCCCcee-EEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC
Q 028806 58 SGTVLLYSWGYFKDCSDRFVGLSPNSVD-ALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 58 d~~i~~wd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
.+.|..||+.+. +.+-.... ..+.. ......+.+++.++.++.|+.||.++|+.+..++........-+.+..+|+
T Consensus 452 ~G~l~A~D~~tG-~~~W~~~~--~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 452 LGQIKAYNAITG-DYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp CEEEEEECTTTC-CEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cCeEEEEECCCC-CEEeEecC--CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCE
Confidence 367777887653 33322222 11222 213446778888999999999999999999888655332222355666775
Q ss_pred -eEEEE
Q 028806 137 -FLGSI 141 (203)
Q Consensus 137 -~l~~~ 141 (203)
|+++.
T Consensus 529 qyv~~~ 534 (599)
T 1w6s_A 529 QYVAIY 534 (599)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 45443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0027 Score=47.26 Aligned_cols=148 Identities=10% Similarity=-0.037 Sum_probs=86.7
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeE-EEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeee-
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
+|++.++.| .+-...+.|..+++..+.. ...+...-.....+++.+.+. ++++-...+.|.++++.. .....+.
T Consensus 41 d~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~ 118 (318)
T 3sov_A 41 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFW 118 (318)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC--CcEEEEEe
Confidence 456544443 3334456777777665421 111111123456788887544 445555678899999863 3333332
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeee-ccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPI-AEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
. .......+ +.|.+..|+.+.. .+.|...++.. .....+ ...-. ....++++|++..|+.+. ..+.|..+++
T Consensus 119 ~-~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~-~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 119 Q-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIY-WPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp S-SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred C-CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCC-CccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 3 34456777 7887777666653 57788888753 333222 22212 468899999777766655 5678999998
Q ss_pred CC
Q 028806 153 DD 154 (203)
Q Consensus 153 ~~ 154 (203)
..
T Consensus 196 dG 197 (318)
T 3sov_A 196 DG 197 (318)
T ss_dssp TS
T ss_pred CC
Confidence 65
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0031 Score=49.05 Aligned_cols=150 Identities=7% Similarity=-0.014 Sum_probs=87.6
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEee-c-CCccceEEEEEeeCCCEEEEe-cCCCeEEEEEcCCcccc---c
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRS-E-FSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDC---S 73 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~---~ 73 (203)
++++| ++.++++-..++.|+.++..++.....+ . ........++|+|+++.|+.+ ...+.|+.+++...... .
T Consensus 233 iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~ 312 (433)
T 4hw6_A 233 CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVP 312 (433)
T ss_dssp CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCC
T ss_pred EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcE
Confidence 46778 6666666667788999998866552222 1 112233579999999855554 45788999886521111 1
Q ss_pred eeeeccC---------------CCceeEE-E---------eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC------
Q 028806 74 DRFVGLS---------------PNSVDAL-L---------KLDEDRVITGSENGLISLVGILPNRIIQPIAEHS------ 122 (203)
Q Consensus 74 ~~~~~~~---------------~~~v~~~-~---------~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------ 122 (203)
..+.+ . -.....+ + .+++.++++-...+.|+.++. +|... ++.+..
T Consensus 313 ~~~ag-~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G 389 (433)
T 4hw6_A 313 YIVCG-QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWG 389 (433)
T ss_dssp EEEEE-CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSC
T ss_pred EEEEe-cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccc
Confidence 12221 1 1123445 5 455666666566778888884 45333 221110
Q ss_pred -----------CCceEEEEEe-CCCCeEEEEeCCCcEEEEeCC
Q 028806 123 -----------EYPIESLALS-HDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 123 -----------~~~i~~i~~~-~~~~~l~~~~~d~~i~iwd~~ 153 (203)
-.....|+++ +++.++++-.....|+.++++
T Consensus 390 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 390 YVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 0136789999 566665555567788888764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0032 Score=46.37 Aligned_cols=132 Identities=8% Similarity=0.010 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCeEEEEEcCCCeE-EEee---------cCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCcccc--c
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNTV-QTRS---------EFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDC--S 73 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~~-~~~~---------~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~--~ 73 (203)
+..+++-...+.|++++..++.. +... ...-.....+ +|++..|+++. ..+.|.+|++...+.. .
T Consensus 128 ~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~ 205 (306)
T 2p4o_A 128 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP 205 (306)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC
T ss_pred CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc
Confidence 33344444578888888776532 2110 0111234555 78887665554 5789999998632221 1
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee--eeccCCCCceEEEEEe---CCCCeEEEEeCC
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ--PIAEHSEYPIESLALS---HDRKFLGSISHD 144 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~i~~i~~~---~~~~~l~~~~~d 144 (203)
..+.. ......+ +.++|+++++....+.|.+++.. ++... .+..... ...+++|. |++..|+.++..
T Consensus 206 ~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~-~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 206 EIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI-GSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT-TEEEEEECCSTTTTTEEEEEECT
T ss_pred EEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccC-CceEEEEecccCCCCEEEEECCC
Confidence 22221 1234556 78899877666667889999975 65532 3333222 57899998 888777766543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0048 Score=51.72 Aligned_cols=151 Identities=9% Similarity=-0.054 Sum_probs=88.3
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCC----eEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCcccccee
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKN----TVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
+|++....| ++-...+.|+.+++... .....+.........|++.+.+..|+ +-...+.|.+.++.. .....
T Consensus 430 ~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG--~~~~~ 507 (791)
T 3m0c_C 430 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKT 507 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEE
T ss_pred eecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC--CeEEE
Confidence 455533333 33344566777776542 11222332334566889987775555 445578999999862 33333
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEe
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWD 151 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd 151 (203)
+..........| +.|...+|+.... .+.|.+.++........+... ......|++++.+..|+.+. ....|..++
T Consensus 508 l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 508 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSID 586 (791)
T ss_dssp EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 332034456778 7887777766653 267888887644333333332 22578999998777776665 456788888
Q ss_pred CCCc
Q 028806 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+...
T Consensus 587 ~dG~ 590 (791)
T 3m0c_C 587 VNGG 590 (791)
T ss_dssp TTSC
T ss_pred cCCC
Confidence 7654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0045 Score=46.08 Aligned_cols=152 Identities=7% Similarity=-0.093 Sum_probs=88.6
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.+. ++++-...+.|.++++........+.........+++.|.+..|+.+. ..+.|..+++. +.....+..
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~ 162 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIIN 162 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEE
Confidence 3444333 334444557788888765432222323345678999998766666555 25788888875 333333322
Q ss_pred cCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
..-.....+ ++|++..|+.+. ..+.|..+++........+..... ....+++.. +..+++-...+.|..++..++.
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 023445677 898777777665 467899999864332222222222 456777753 3444455567889999886665
Q ss_pred c
Q 028806 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 241 ~ 241 (318)
T 3sov_A 241 G 241 (318)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0029 Score=49.96 Aligned_cols=154 Identities=11% Similarity=0.046 Sum_probs=88.3
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcC-------CCeE-----------EEe-ec-CCccceEEEEEeeCCCEEEEe-cCCC
Q 028806 2 TFAAD-AMKLLGTSGDGTLSVCNLR-------KNTV-----------QTR-SE-FSEEELTSVVLMKNGRKVVCG-SQSG 59 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~vw~~~-------~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~l~~~-~~d~ 59 (203)
+++|+ +.++++-..++.|..+++. ++.. ... +. ........|+|+|+++.|+.+ ...+
T Consensus 253 avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h 332 (496)
T 3kya_A 253 TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNH 332 (496)
T ss_dssp EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred EEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCC
Confidence 56774 4555566677889999987 4432 111 11 223456799999999965544 4577
Q ss_pred eEEEEEcCCccccc---eeeeccC---------------CCcee-EEE-e-------eCCCEEEEEcCCCcEEEEEccCC
Q 028806 60 TVLLYSWGYFKDCS---DRFVGLS---------------PNSVD-ALL-K-------LDEDRVITGSENGLISLVGILPN 112 (203)
Q Consensus 60 ~i~~wd~~~~~~~~---~~~~~~~---------------~~~v~-~~~-~-------~~~~~l~~~~~d~~i~~~d~~~~ 112 (203)
.|+.++.......+ ..+.+ . -.... .++ . +.+.++++-...+.|+.++ .+|
T Consensus 333 ~I~kid~dg~~~~~~~~~~~aG-~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G 410 (496)
T 3kya_A 333 YFMRSDYDEIKKEFITPYNFVG-GYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG 410 (496)
T ss_dssp EEEEEEEETTTTEECCCEEEEE-BTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC
T ss_pred EEEEEecCCCcceecccEEecC-CCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC
Confidence 88887764211111 12222 1 01123 333 3 4455566656678899998 445
Q ss_pred ceeeeeccC--------------CC---------CceEEEEEeCC-CCeEEEEeCCCcEEEEeCCCcccC
Q 028806 113 RIIQPIAEH--------------SE---------YPIESLALSHD-RKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 113 ~~~~~~~~~--------------~~---------~~i~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.. .++.+. .+ .....|+++++ +.++++-.....|+.+++.....-
T Consensus 411 ~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 411 IV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp BE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 33 233211 00 13678999996 666666557788999988654443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.006 Score=45.24 Aligned_cols=152 Identities=11% Similarity=-0.089 Sum_probs=88.6
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-C-CeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-S-GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.+..| ++-...+.|.++++........+.........+++.|.+..|+.+.. . +.|..+++. +.....+..
T Consensus 83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~~~ 160 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 160 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEEC
T ss_pred EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--CCCeEEEEE
Confidence 455444433 44455678888887754333333323356789999987666655543 2 678888875 333333321
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccC-CCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEH-SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
........+ ++|++..|+.+.. .+.|..+++............ .......+++. .+..+++-...+.|..++..++
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 023445677 8888777776654 578999998643222222211 11135677775 3444555556778999887655
Q ss_pred c
Q 028806 156 L 156 (203)
Q Consensus 156 ~ 156 (203)
.
T Consensus 240 ~ 240 (316)
T 1ijq_A 240 S 240 (316)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0085 Score=46.07 Aligned_cols=153 Identities=11% Similarity=-0.100 Sum_probs=88.5
Q ss_pred ccccc-CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028806 2 TFAAD-AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+. ++++++-...+.|.+.++........+...-.....|++.|.+..|+.+.. .+.|...++. +.....+..
T Consensus 165 avD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--G~~~~~~~~ 242 (400)
T 3p5b_L 165 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 242 (400)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--SCSCEEEEC
T ss_pred EEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--CCccEEEEE
Confidence 34443 333344445677888777655443333333445789999997666665542 4678888875 333333322
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccC-CCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEH-SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
........| +++++..|+.+.. .+.|..+++........+... .......+++. .+..+++-...+.|..++..++
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 033456777 8888877777654 578999998644332222221 11134567763 3344455556778888886655
Q ss_pred cc
Q 028806 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
..
T Consensus 322 ~~ 323 (400)
T 3p5b_L 322 SD 323 (400)
T ss_dssp CC
T ss_pred Cc
Confidence 43
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0081 Score=46.67 Aligned_cols=151 Identities=9% Similarity=0.052 Sum_probs=85.8
Q ss_pred Ccccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCc-ccc--ce
Q 028806 1 MTFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYF-KDC--SD 74 (203)
Q Consensus 1 l~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~-~~~--~~ 74 (203)
++++| ++.++++-...+.|..++..++....... ........++|+|++++|+. -...+.|..++.... +.. ..
T Consensus 231 iavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~ 310 (430)
T 3tc9_A 231 AETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPY 310 (430)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred EEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceE
Confidence 35778 66666666677899999988765422222 12245778999999995554 456788999887521 111 11
Q ss_pred eeeccC---------------CCcee-EEE-e--------eCCCEEEEEcCCCcEEEEEccCCceeeeecc----CC---
Q 028806 75 RFVGLS---------------PNSVD-ALL-K--------LDEDRVITGSENGLISLVGILPNRIIQPIAE----HS--- 122 (203)
Q Consensus 75 ~~~~~~---------------~~~v~-~~~-~--------~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~--- 122 (203)
.+.+ . -.... .++ . +++.++++-...+.|+.++. .|......-. ..
T Consensus 311 ~~ag-~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~ 388 (430)
T 3tc9_A 311 IVCG-QQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYN 388 (430)
T ss_dssp EEEE-CTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCB
T ss_pred EEec-cCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCccc
Confidence 2221 1 01112 332 2 23444445455677888873 4543322211 00
Q ss_pred C---------CceEEEEEeCC-CCeEEEEeCCCcEEEEeCC
Q 028806 123 E---------YPIESLALSHD-RKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 123 ~---------~~i~~i~~~~~-~~~l~~~~~d~~i~iwd~~ 153 (203)
. .....++++|+ +.++++-.....|+.++++
T Consensus 389 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 389 DGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 0 14678999995 5555555566778887753
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00023 Score=58.79 Aligned_cols=151 Identities=9% Similarity=-0.074 Sum_probs=84.4
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCC----CeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGT-SGDGTLSVCNLRK----NTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
|+|++.+..|+.+ ...+.|+.+++.+ ......+.........|++.+.+. ++++-...+.|.++++.. ....
T Consensus 411 la~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg--~~~~ 488 (699)
T 1n7d_A 411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 488 (699)
T ss_dssp CEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS--CCEE
T ss_pred EccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC--CceE
Confidence 4677766666554 3457888888765 222122221122345678775444 444444567899998753 3333
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEE
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLW 150 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iw 150 (203)
.+..........+ +.|.+.+|+.+.. .+.|.++++... ....+..........|+|+|++..|+.+. ..+.|.++
T Consensus 489 ~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~ 567 (699)
T 1n7d_A 489 TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 567 (699)
T ss_dssp EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEE
Confidence 3322022345566 6887666665543 267887776532 22222111112456799999876665554 56789999
Q ss_pred eCCC
Q 028806 151 DLDD 154 (203)
Q Consensus 151 d~~~ 154 (203)
++..
T Consensus 568 d~dG 571 (699)
T 1n7d_A 568 DVNG 571 (699)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 9865
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.011 Score=44.56 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=87.5
Q ss_pred CCeEEEEEcC--CCeEEEeecC------Cc-cceEEEEE--eeC-CC-EEEEecCCCeEEEEEcCC------ccccceee
Q 028806 16 DGTLSVCNLR--KNTVQTRSEF------SE-EELTSVVL--MKN-GR-KVVCGSQSGTVLLYSWGY------FKDCSDRF 76 (203)
Q Consensus 16 d~~i~vw~~~--~~~~~~~~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~d~~i~~wd~~~------~~~~~~~~ 76 (203)
+++|.+|++. ++. +..+.. .. ..+..+++ +|. +. ++++...+|.+..|++.. ..+.++.|
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 5789999773 443 444421 11 45666777 564 43 677888899999999842 22445666
Q ss_pred eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEcc-----CCceeeeec-cCCCCceEEEEE--eCCCC-eEEEEe-CCC
Q 028806 77 VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGIL-----PNRIIQPIA-EHSEYPIESLAL--SHDRK-FLGSIS-HDS 145 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~-----~~~~~~~~~-~~~~~~i~~i~~--~~~~~-~l~~~~-~d~ 145 (203)
.. . ..+..+ ..+....|+.+-.+.-|..|+.+ +++.+..+. .+....+..|++ .++++ ||++++ .+.
T Consensus 177 ~l-g-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 177 KM-N-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp EC-S-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred cC-C-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 64 3 345555 78888999999998777777755 234554442 222235788887 45566 677666 677
Q ss_pred cEEEEeCC
Q 028806 146 MLKLWDLD 153 (203)
Q Consensus 146 ~i~iwd~~ 153 (203)
++.+||..
T Consensus 255 s~~Vydr~ 262 (355)
T 3amr_A 255 SYAIYDRQ 262 (355)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 99999996
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.022 Score=47.78 Aligned_cols=151 Identities=11% Similarity=-0.111 Sum_probs=87.8
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.++.| ++-...+.|.+.++........+...-.....|++.|.+..|+.+.. .+.|.+.++. +.....+..
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--G~~~~~lv~ 554 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 554 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEEC
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC--CCceEEEEe
Confidence 455555444 44455678888888765443333333455789999997666665543 3678888875 333333332
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
........| +.+.+..|+.+.. .+.|..+++........+.... -.....|++. +.+|+.+. ..+.|...+..+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence 033456777 7877777776654 5678888886443333332211 1134566663 33454444 567788777655
Q ss_pred cc
Q 028806 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
+.
T Consensus 633 G~ 634 (791)
T 3m0c_C 633 GS 634 (791)
T ss_dssp CC
T ss_pred Cc
Confidence 53
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.016 Score=44.74 Aligned_cols=133 Identities=12% Similarity=0.141 Sum_probs=83.4
Q ss_pred CeEEEEEcCCCeEEEeecCC----ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc---c------cc--eeeec---
Q 028806 17 GTLSVCNLRKNTVQTRSEFS----EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK---D------CS--DRFVG--- 78 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---~------~~--~~~~~--- 78 (203)
+.||.-++......+.+... -..|..+..+|+|.+|+..+. ..|.|-.+.... . .+ ..+.-
T Consensus 41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 56666666533222233222 235788999999999998865 578888886211 0 01 11211
Q ss_pred --cCCCceeEE-Eee---CCCEEEEEcCCCcEEEEEccCCc--eeeeeccCC--------CCceEEEEEeCCCCeEEEEe
Q 028806 79 --LSPNSVDAL-LKL---DEDRVITGSENGLISLVGILPNR--IIQPIAEHS--------EYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 79 --~~~~~v~~~-~~~---~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~--------~~~i~~i~~~~~~~~l~~~~ 142 (203)
....+|..+ |+| .+..|++-..|+.|++||+.... +. .+.... ...|.+++|.+++-.|...+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 013557777 988 45689999999999999997522 22 222110 12588999999887777755
Q ss_pred --CCCcEEEEe
Q 028806 143 --HDSMLKLWD 151 (203)
Q Consensus 143 --~d~~i~iwd 151 (203)
..|.|+-.-
T Consensus 199 ~t~~GDIYAlc 209 (452)
T 3pbp_A 199 TTEGGDIFAFY 209 (452)
T ss_dssp CTTSCEEEEES
T ss_pred cCCCCCEEEEC
Confidence 778776654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0037 Score=51.23 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=43.3
Q ss_pred ccccCCEEEEEcC-CCeEEEEEcCCCeEEEeecCCccc-eEEEEEeeCCCEEEEec-CC-----CeEEEEEcCC
Q 028806 3 FAADAMKLLGTSG-DGTLSVCNLRKNTVQTRSEFSEEE-LTSVVLMKNGRKVVCGS-QS-----GTVLLYSWGY 68 (203)
Q Consensus 3 ~sp~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-~d-----~~i~~wd~~~ 68 (203)
+.+++++++.|+. +..+.+||..++.-...-.-+..+ -.+++..++++.++.|+ .+ ..+.+||..+
T Consensus 250 ~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 250 MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 4578888888874 458999999876543322111121 23445567899999888 34 5688998853
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0037 Score=47.21 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=54.3
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeec---CCccceEEEEEeeC---CCEEEEecC-C-----CeEEEEEc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSE---FSEEELTSVVLMKN---GRKVVCGSQ-S-----GTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----~~i~~wd~ 66 (203)
|+|.|+|+++++ ...+.|++++ .+.. +..+. ........|+++|+ +..|+++.. . +.|..|+.
T Consensus 36 ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~ 112 (352)
T 2ism_A 36 LAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH 112 (352)
T ss_dssp EEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred EEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence 578999986555 4569999998 4432 22221 22356889999998 555554433 2 57888877
Q ss_pred CCcc-----ccceeee--ccCCCceeEE-EeeCCCEEEEE
Q 028806 67 GYFK-----DCSDRFV--GLSPNSVDAL-LKLDEDRVITG 98 (203)
Q Consensus 67 ~~~~-----~~~~~~~--~~~~~~v~~~-~~~~~~~l~~~ 98 (203)
.... ..+..+. .........+ |.|+|.+.++.
T Consensus 113 ~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 113 LGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp CSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred CCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 5210 1111122 1011223566 89999766654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.013 Score=44.25 Aligned_cols=139 Identities=12% Similarity=0.078 Sum_probs=76.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEee----cCCccceEEEEEeeC---CCEEEEe---cCCCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRS----EFSEEELTSVVLMKN---GRKVVCG---SQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~d~~i~~wd~~~ 68 (203)
|+|.|+|.++++--..|.|++++..++.. +..+ .........|+++|+ +..|+.. ..++.|.-|.+..
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDE 116 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCC
Confidence 57899999777765589999998665543 2222 123456899999985 3444432 2345666666642
Q ss_pred cc-------ccceeeec---cCCCceeEE-EeeCCCEEEEEcC-------------CCcEEEEEccCC----c---eeee
Q 028806 69 FK-------DCSDRFVG---LSPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPN----R---IIQP 117 (203)
Q Consensus 69 ~~-------~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~-------------d~~i~~~d~~~~----~---~~~~ 117 (203)
.. .....+.. ........| |.|+|.+.++.+. .|.|.-++.... . ....
T Consensus 117 ~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i 196 (347)
T 3das_A 117 KKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPV 196 (347)
T ss_dssp TSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCE
T ss_pred CCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeE
Confidence 10 11111111 012234456 8999987776432 355555554321 0 0111
Q ss_pred e-ccCCCCceEEEEEeCCCCeEEEE
Q 028806 118 I-AEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 118 ~-~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
+ .++ . ....++|+|++.+.++-
T Consensus 197 ~a~G~-R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 197 YSYGH-R-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp EEBCC-S-BCCEEEECTTCCEEEEE
T ss_pred EeeCC-C-CcceEEECCCCCEEEEe
Confidence 2 233 2 45789999987765543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.022 Score=42.07 Aligned_cols=139 Identities=6% Similarity=-0.059 Sum_probs=82.8
Q ss_pred ccccCCEEEEEcCC--------------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec--CCCeEEEEEc
Q 028806 3 FAADAMKLLGTSGD--------------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSW 66 (203)
Q Consensus 3 ~sp~~~~l~~~~~d--------------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~ 66 (203)
+++++.+|+.+... ..|+..++..++....... . ...|++++..|+... .++.-.||-+
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~-~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-P----CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS-C----EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC-C----ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 57788888776542 4677777776543222221 1 236788888888765 3444445544
Q ss_pred CCccccceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
...+...+.+.. +.. . ++|+++.|+..+. ...|.+.++..+.....+.. ... ..+.|++.+|+.....
T Consensus 135 ~~dGs~~~~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~-~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 135 RIDGEEKKKIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCY-KPVVLDDTNVYYMDVN 204 (302)
T ss_dssp ETTSCCCEEEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEE-EEEEEETTEEEEEEGG
T ss_pred ECCCCCeEEEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC----Ccc-ceeeecCCEEEEEEcC
Confidence 433444555554 322 3 6888988887665 56788888766554433322 222 3466888888866543
Q ss_pred --CcEEEEeCCCcc
Q 028806 145 --SMLKLWDLDDIL 156 (203)
Q Consensus 145 --~~i~iwd~~~~~ 156 (203)
..|..-++.+..
T Consensus 205 ~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 205 RDNAIVHVNINNPN 218 (302)
T ss_dssp GTTEEEEECSSSCC
T ss_pred CCcEEEEEECCCCC
Confidence 356666665543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0011 Score=54.71 Aligned_cols=153 Identities=12% Similarity=-0.102 Sum_probs=84.2
Q ss_pred cccccCC-EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.+. ++++-...+.|.++++........+.........|++.|.+.+|+.+.. .+.|.++++.. .....+..
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG--~~~~~l~~ 536 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVT 536 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS--CCCCEESC
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC--CCeeEEEe
Confidence 4444333 3344345678888888765443333333345677899986655555443 26787777652 22222221
Q ss_pred cCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccC-CCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEH-SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
........| ++|++..|+.+. ..+.|.++++........+... .......|++..+ .++++....+.|..++..++
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 022345567 888766665554 5678999998643322222211 0112345566544 34445556678999987665
Q ss_pred cc
Q 028806 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
..
T Consensus 616 ~~ 617 (699)
T 1n7d_A 616 SD 617 (699)
T ss_dssp EE
T ss_pred Cc
Confidence 43
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.005 Score=43.24 Aligned_cols=148 Identities=7% Similarity=-0.108 Sum_probs=79.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE------EEee-cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc-
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV------QTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~------~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~- 72 (203)
|+|+|+|.+.++ .+|.++-.+..+... ...+ ...-.....+.|.|++.+.++ .||.|+-++-.+.+..
T Consensus 46 laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~ 121 (236)
T 1tl2_A 46 LFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDN 121 (236)
T ss_dssp EEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC
T ss_pred EEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCc
Confidence 578998886666 667777766544110 0111 111112467889999988777 5698888875332211
Q ss_pred c---eeeec-cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce-----eeeeccCCCC-ceEEEEEeCCCCeEEEE
Q 028806 73 S---DRFVG-LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI-----IQPIAEHSEY-PIESLALSHDRKFLGSI 141 (203)
Q Consensus 73 ~---~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~~-~i~~i~~~~~~~~l~~~ 141 (203)
+ ....+ ..-..+..| +.|+|.+.+.. ++.++-....++.. ..+...+... .-..+.|.+++...++.
T Consensus 122 Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 122 WIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp HHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred eeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 1 01111 012456777 78999877776 77654332221110 1111111111 33456789998877766
Q ss_pred eCCCcEEEEeCCCcccC
Q 028806 142 SHDSMLKLWDLDDILKG 158 (203)
Q Consensus 142 ~~d~~i~iwd~~~~~~~ 158 (203)
++ ++|.....++.
T Consensus 200 --~g--~~Y~~~~p~~~ 212 (236)
T 1tl2_A 200 --GG--KFYEDYPPSYA 212 (236)
T ss_dssp --TT--EEEEESCCCST
T ss_pred --CC--eEEecCCcccc
Confidence 66 45555444433
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.027 Score=42.60 Aligned_cols=148 Identities=10% Similarity=0.087 Sum_probs=85.4
Q ss_pred cccccCCEEEEE------------cCCCeEEEEEcCC--CeEE-EeecC-----CccceEEEEEee--CCC-EEEEec-C
Q 028806 2 TFAADAMKLLGT------------SGDGTLSVCNLRK--NTVQ-TRSEF-----SEEELTSVVLMK--NGR-KVVCGS-Q 57 (203)
Q Consensus 2 ~~sp~~~~l~~~------------~~d~~i~vw~~~~--~~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l~~~~-~ 57 (203)
+..|+|..++++ ..+|.|.++|..+ ++.. ..+.+ .......+.+.+ ++. +|+++. .
T Consensus 56 ~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~ 135 (355)
T 3sre_A 56 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP 135 (355)
T ss_dssp EECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred EEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC
Confidence 356776555554 2689999999873 2221 12222 234677888776 353 344432 2
Q ss_pred --CCeEEEEEcCCccccce---eeeccCCCceeEE-EeeCCCEEEEEcC-----------------CCcEEEEEccCCce
Q 028806 58 --SGTVLLYSWGYFKDCSD---RFVGLSPNSVDAL-LKLDEDRVITGSE-----------------NGLISLVGILPNRI 114 (203)
Q Consensus 58 --d~~i~~wd~~~~~~~~~---~~~~~~~~~v~~~-~~~~~~~l~~~~~-----------------d~~i~~~d~~~~~~ 114 (203)
+.++.+|++...+.... .+.+..-.....+ +.++|.+.++... .|.|..++. ++.
T Consensus 136 ~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~ 213 (355)
T 3sre_A 136 GSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV 213 (355)
T ss_dssp TTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC
T ss_pred CCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE
Confidence 56888888864333222 2222112345667 7888887666431 244544543 433
Q ss_pred eeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 115 IQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 115 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
......- . ..+.++|+||+++|+.+. ..+.|..|++.
T Consensus 214 ~~~~~~l-~-~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 214 RVVAEGF-D-FANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEEEEE-S-SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EEeecCC-c-ccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 3222222 2 468899999998877665 56889999986
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.045 Score=45.82 Aligned_cols=144 Identities=13% Similarity=0.106 Sum_probs=87.3
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeecC--------CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSEF--------SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
+|+ |-.|+.++-|..|+..++........ ....|.++...++++.|..|+.++-|.+|+..+ +. ...+.
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~ 443 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFN 443 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEEC
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEee
Confidence 444 44456666788888877654332211 135688998888888566677767799999764 22 22222
Q ss_pred c----cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc-----CCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 78 G----LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE-----HSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 78 ~----~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
. .....|.++ ..++|.+.+. +..| |.+|+..+++....... .....|.++...++|+..+.. . +-|
T Consensus 444 ~~~~~l~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl 519 (795)
T 4a2l_A 444 QRNSQLVNENVYAILPDGEGNLWLG-TLSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGL 519 (795)
T ss_dssp TTTSCCSCSCEEEEEECSSSCEEEE-ESSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCE
T ss_pred cCCCCcCCCeeEEEEECCCCCEEEE-ecCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-Cce
Confidence 1 023467777 5667765544 4444 88899877654332211 112368999998888765544 3 558
Q ss_pred EEEeCCCcc
Q 028806 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
..|+..+..
T Consensus 520 ~~~~~~~~~ 528 (795)
T 4a2l_A 520 SVFKQEGLD 528 (795)
T ss_dssp EEEEEETTE
T ss_pred EEEeCCCCe
Confidence 888876543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.045 Score=44.62 Aligned_cols=151 Identities=11% Similarity=-0.003 Sum_probs=88.6
Q ss_pred cccccCCEEEEE-cCCCeEEEEEcCCCeE-EEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeee-
Q 028806 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTV-QTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
+|++.+..|+.+ ...+.|..+++..... ...+...-.....+++.+.+..|+ +-...+.|.+.++.. .....+.
T Consensus 46 d~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG--~~~~~l~~ 123 (619)
T 3s94_A 46 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFW 123 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC
T ss_pred EEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC--CCEEEEEe
Confidence 566655555443 3456777777765421 222333335678999998655554 445678999999863 3333333
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
. .-.....+ +.|.+.+|+.... .+.|...++. |.....+..........+++++++..|+.+. ..+.|..+++.
T Consensus 124 ~-~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 124 Q-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp S-SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred C-CCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence 3 34456677 7887666666653 3567666665 3333233211122578999999777666555 56789999887
Q ss_pred Ccc
Q 028806 154 DIL 156 (203)
Q Consensus 154 ~~~ 156 (203)
...
T Consensus 202 G~~ 204 (619)
T 3s94_A 202 GTN 204 (619)
T ss_dssp CCE
T ss_pred CCc
Confidence 643
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.052 Score=44.32 Aligned_cols=150 Identities=10% Similarity=0.072 Sum_probs=91.6
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeee-
Q 028806 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFV- 77 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~- 77 (203)
|+|++.+..|+ +-..++.|+.+++........+.........|++.+.+..|+ +-...+.|.+.++.. .....+.
T Consensus 42 l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG--~~~~~l~~ 119 (628)
T 4a0p_A 42 LDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG--QHRQVLVW 119 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--TTCEEEEC
T ss_pred EEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC--CcEEEEEe
Confidence 35666555544 444567788888765433333332224567888887655554 444578899999863 3333332
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 153 (203)
. .-.....+ +.|....|+.... .+.|...++.......... ... ....+++++++..|+.+. ..+.|..+++.
T Consensus 120 ~-~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~-~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 120 K-DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVG-RANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp S-SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCS-SEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCC-CcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 3 34456777 7886666666653 4677777765433332232 223 578999999877776665 56788888886
Q ss_pred Cc
Q 028806 154 DI 155 (203)
Q Consensus 154 ~~ 155 (203)
..
T Consensus 197 G~ 198 (628)
T 4a0p_A 197 GL 198 (628)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.022 Score=42.56 Aligned_cols=146 Identities=7% Similarity=-0.000 Sum_probs=88.6
Q ss_pred cccCCEEEEEc-------------CCCeEEEEEcC---CCeEEEeec--C-----------CccceEEEEEeeCCCEEEE
Q 028806 4 AADAMKLLGTS-------------GDGTLSVCNLR---KNTVQTRSE--F-----------SEEELTSVVLMKNGRKVVC 54 (203)
Q Consensus 4 sp~~~~l~~~~-------------~d~~i~vw~~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~l~~ 54 (203)
.|+++++++.. .+..|..+|+. +++.+.... . .......++..++|+..++
T Consensus 74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt 153 (334)
T 2p9w_A 74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA 153 (334)
T ss_dssp SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence 57777766543 25779999998 676544332 1 1134789999999999998
Q ss_pred ecCC-CeEEEEEcCCccccceeeecc-----CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce--eeeec--cC--
Q 028806 55 GSQS-GTVLLYSWGYFKDCSDRFVGL-----SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI--IQPIA--EH-- 121 (203)
Q Consensus 55 ~~~d-~~i~~wd~~~~~~~~~~~~~~-----~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~--~~-- 121 (203)
++.. +.|..++.. +..+..+... .......+ ++|+|..|++....|.|..+|+..... +. .. +.
T Consensus 154 ~s~~~~~I~rV~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~ 230 (334)
T 2p9w_A 154 FALGMPAIARVSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFG 230 (334)
T ss_dssp EEESSCEEEEECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCC
T ss_pred CCCCCCeEEEEeCC--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcc
Confidence 8887 777766654 3333333210 11225567 899999999887799999999874322 11 11 11
Q ss_pred CCCceEEE-EEeCCCCe-EEEEeCCCcEEEEeC
Q 028806 122 SEYPIESL-ALSHDRKF-LGSISHDSMLKLWDL 152 (203)
Q Consensus 122 ~~~~i~~i-~~~~~~~~-l~~~~~d~~i~iwd~ 152 (203)
.......| ....+|+. |++....+.+.+.+.
T Consensus 231 ~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 231 TLSGTEKIVTVPVGNESVLVGARAPYAISFRSW 263 (334)
T ss_dssp CCTTEEEEEEEEETTEEEEEEEETTEEEEEECS
T ss_pred cccCcccccccccCCEEEEEEcCCCCEEEEECC
Confidence 01123333 33347777 445555666666554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.061 Score=45.01 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=85.5
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeec----CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSE----FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-- 78 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-- 78 (203)
++++.|..|+.++.|.+|+..+++...... .....|.++...+++.+.+.+. . -+.+|+..+ + ....+..
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~-~-~~~~~~~~~ 490 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQ-R-SFTTIEKEK 490 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTT-T-EEEECCBCT
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCC-C-eEEEccccc
Confidence 455536666666779999988776543221 1245688898888887655543 4 488888753 2 2222221
Q ss_pred ----cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc------CCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 79 ----LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE------HSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 79 ----~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~------~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
.....+.++ ..++|.+.+.. .. -|..|+..++.. .+.. .....|.++...++|++.+. +.. -|
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl 564 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKRLWIGG-EE-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG-TRE-GF 564 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCCEEEEE-SS-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESS-CE
T ss_pred cccccCCceEEEEEECCCCCEEEEe-CC-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCC-Cc
Confidence 012457777 56777655544 44 488899877654 2221 11126889998888875543 333 57
Q ss_pred EEEeCCCc
Q 028806 148 KLWDLDDI 155 (203)
Q Consensus 148 ~iwd~~~~ 155 (203)
..||..+.
T Consensus 565 ~~~d~~~~ 572 (795)
T 4a2l_A 565 YCFNEKDK 572 (795)
T ss_dssp EEEETTTT
T ss_pred eeECCCCC
Confidence 88887654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.014 Score=44.08 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=73.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-EEEeec---CCccceEEEEEeeC---CCEEEEecC----C----CeEEEEE
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-VQTRSE---FSEEELTSVVLMKN---GRKVVCGSQ----S----GTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----~~i~~wd 65 (203)
|+|.|+|+++++ ...+.|++++ .++. .+..+. ........|+++|+ +..|+++.. + ..|..|+
T Consensus 34 ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~ 111 (354)
T 3a9g_A 34 IAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGR 111 (354)
T ss_dssp EEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEE
T ss_pred EEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEE
Confidence 578899985555 4559999997 4454 222221 22356889999997 455554432 2 5677777
Q ss_pred cCCcc------c-cceeeeccCCCceeEE-EeeCCCEEEEEcC-------------CCcEEEEEccCC---------cee
Q 028806 66 WGYFK------D-CSDRFVGLSPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPN---------RII 115 (203)
Q Consensus 66 ~~~~~------~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-------------d~~i~~~d~~~~---------~~~ 115 (203)
..... + .+..+..........+ |.|+|.++++.+. .|.|..++.... ..+
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i 191 (354)
T 3a9g_A 112 LDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPI 191 (354)
T ss_dssp ECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCE
T ss_pred ECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcE
Confidence 65321 0 1111221011233556 8999986666432 245655554321 011
Q ss_pred eeeccCCCCceEEEEEeC-CCCeEEEE
Q 028806 116 QPIAEHSEYPIESLALSH-DRKFLGSI 141 (203)
Q Consensus 116 ~~~~~~~~~~i~~i~~~~-~~~~l~~~ 141 (203)
.. .++ . ....++|+| +++.+++-
T Consensus 192 ~a-~G~-r-np~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 192 WS-YGH-R-NPQGIDWHRASGVMVATE 215 (354)
T ss_dssp EE-ECC-S-CCCEEEECTTTCCEEEEE
T ss_pred EE-Ecc-C-CcceEEEeCCCCCEEEEe
Confidence 11 223 2 356899999 56655443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.02 Score=44.85 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=55.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeecC------CccceEEEEEeeC---CCEEEEecC------------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEF------SEEELTSVVLMKN---GRKVVCGSQ------------ 57 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~------------ 57 (203)
|+|.|+|+++++-...+.|++++..++.. +..+.. ....+..|+|+|+ +..|+++..
T Consensus 32 ~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~ 111 (454)
T 1cru_A 32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELP 111 (454)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSC
T ss_pred EEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccc
Confidence 57889999777765445788887655533 222321 2456789999995 555544332
Q ss_pred -CCeEEEEEcCCcc------c-cceeeeccCCCceeEE-EeeCCCEEEEEc
Q 028806 58 -SGTVLLYSWGYFK------D-CSDRFVGLSPNSVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 58 -d~~i~~wd~~~~~------~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~ 99 (203)
...|..|++.... + .+..+..........+ |.|+|.+.++.+
T Consensus 112 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 112 NQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2356666653211 1 1111111012345667 899998777644
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.037 Score=41.17 Aligned_cols=144 Identities=8% Similarity=0.023 Sum_probs=79.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEc--CCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNL--RKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++.|++.+++++...+.++-.|- .+.+.+. ......+..+.+.+++..++. +.+|.+++.... .+.....+...
T Consensus 169 ~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D-~G~tW~~~~~~ 244 (327)
T 2xbg_A 169 NRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPD-NSENWGELLSP 244 (327)
T ss_dssp EECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETT-EEEEECCCBCT
T ss_pred EEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCC-CCCeeEeccCC
Confidence 45677777766654333333342 2333332 233456888999888876654 456877776422 12333322210
Q ss_pred ---CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC--CCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 80 ---SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH--SEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 80 ---~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
....+..+ +.+++..++++. ++.| ++....|+.-..+... ....+.++.|.++++ +++++.+|.|.-++-
T Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 245 LRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred cccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 12346677 677776666554 5666 3444445444333321 012578888876554 566667888777653
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0044 Score=47.83 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=69.3
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCe------------EEEeecC------CccceEEEEEeeC---CCEEEEecCCCe
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNT------------VQTRSEF------SEEELTSVVLMKN---GRKVVCGSQSGT 60 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~------------~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~d~~ 60 (203)
..||+|.+||..+. ..|.|..+..+. ....+.- ...+|..+.|||- +..|++-..|+.
T Consensus 72 vlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~ 150 (452)
T 3pbp_A 72 ISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT 150 (452)
T ss_dssp EECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC
T ss_pred EECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE
Confidence 46899999998865 689999887321 0111211 2467999999994 468899899999
Q ss_pred EEEEEcCCcc-ccceeeec--------cCCCceeEE-EeeCCCEEEEEc--CCCcEEEE
Q 028806 61 VLLYSWGYFK-DCSDRFVG--------LSPNSVDAL-LKLDEDRVITGS--ENGLISLV 107 (203)
Q Consensus 61 i~~wd~~~~~-~~~~~~~~--------~~~~~v~~~-~~~~~~~l~~~~--~d~~i~~~ 107 (203)
|++||+.... .+. .+.. .....+.++ |..++-.|+..+ ..|.|+-.
T Consensus 151 Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 151 ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999997421 111 2221 012456676 877777777755 77887654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.012 Score=48.28 Aligned_cols=115 Identities=11% Similarity=-0.008 Sum_probs=69.7
Q ss_pred EEEEee-CCCEEEEecCCC-----------eEEEEEcCCcc-ccceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEE
Q 028806 42 SVVLMK-NGRKVVCGSQSG-----------TVLLYSWGYFK-DCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISL 106 (203)
Q Consensus 42 ~~~~~~-~~~~l~~~~~d~-----------~i~~wd~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~ 106 (203)
.+++.+ +++.++.|+.+. .+.+||..+.. ..+..+...+.....++ +.+++.++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 788888876532 57888886422 11222221011122233 5788999999884 457999
Q ss_pred EEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CC-----CcEEEEeCCCcc
Q 028806 107 VGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HD-----SMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~ 156 (203)
||+.+.+-...-..+....-.+++..++++.++.|+ .+ ..+.+||..+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 999876544322222121223556667999988888 34 468999987653
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.043 Score=40.01 Aligned_cols=144 Identities=10% Similarity=0.018 Sum_probs=74.2
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEE--EeecCCccceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccc
Q 028806 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~ 73 (203)
++++++.|+.+ ..+.+||+.+.+-. ..+.........+ ..++..++.|+.+ ..+.+||+.+ ..+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~d~~~--~~W 187 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV--VASGVIYCLGGYDGLNILNSVEKYDPHT--GHW 187 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTT--TEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE--EECCEEEEECCCCCCcccceEEEEeCCC--CcE
Confidence 45556666543 36888998876432 2222222212222 2367777777654 4688888764 233
Q ss_pred eeeeccCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC--
Q 028806 74 DRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-- 144 (203)
Q Consensus 74 ~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-- 144 (203)
..+.. ...+ -.++...++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. -+++.++.|+.+
T Consensus 188 ~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 188 TNVTP-MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGN 265 (301)
T ss_dssp EEECC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSS
T ss_pred EeCCC-CCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCC
Confidence 33322 1111 112233466777777653 468899998765432211111111112222 266677777654
Q ss_pred ---CcEEEEeCCCc
Q 028806 145 ---SMLKLWDLDDI 155 (203)
Q Consensus 145 ---~~i~iwd~~~~ 155 (203)
..+.+||+.+.
T Consensus 266 ~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 266 SLLSSIECYDPIID 279 (301)
T ss_dssp SBEEEEEEEETTTT
T ss_pred cccccEEEEcCCCC
Confidence 35778887654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.11 Score=42.46 Aligned_cols=150 Identities=10% Similarity=-0.025 Sum_probs=88.8
Q ss_pred cccccCCEE-EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKL-LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.+..| ++-...+.|.+.++........+...-.....|++.|....|+.+.. .+.|...++. +.....+..
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~l~~ 163 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTTLVP 163 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEEEEC
Confidence 444444434 44445677888887654322222233345789999986656665542 5677777775 333344433
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
.......+ +++++..|+.+.. .+.|..+++..... ..+..... ....+++.. +..+++-...+.|...|..++.
T Consensus 164 -~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 164 -NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred -CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 44556677 8888777776654 57788999865433 23333222 356777765 3444444457888888876664
Q ss_pred c
Q 028806 157 K 157 (203)
Q Consensus 157 ~ 157 (203)
.
T Consensus 240 ~ 240 (628)
T 4a0p_A 240 N 240 (628)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.062 Score=39.19 Aligned_cols=144 Identities=10% Similarity=0.000 Sum_probs=72.9
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEEEe--ecCCccceEEEEEeeCCCEEEEecCC-------CeEEEEEcCCccc
Q 028806 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-------GTVLLYSWGYFKD 71 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~wd~~~~~~ 71 (203)
++++++.|+.+ ..+.+||+.+..-... +........ ++ .-++..++.|+.+ ..+.+||+.+ .
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~ 183 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVG-VG-VVGGLLYAVGGYDVASRQCLSTVECYNATT--N 183 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCE-EE-EETTEEEEECCEETTTTEECCCEEEEETTT--T
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCce-EE-EECCEEEEEeCCCCCCCccccEEEEEeCCC--C
Confidence 45566666544 3577888877654322 221111112 22 2356666666542 3588888763 2
Q ss_pred cceeeeccCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 72 CSDRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 72 ~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
.+..+.. ...+ -.++...++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++ ..++..++.|+.+
T Consensus 184 ~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~ 261 (302)
T 2xn4_A 184 EWTYIAE-MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDD 261 (302)
T ss_dssp EEEEECC-CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBC
T ss_pred cEEECCC-CccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcC
Confidence 3333322 1111 112234467777777654 36889998876533221111110111222 2266777777754
Q ss_pred C-----cEEEEeCCCc
Q 028806 145 S-----MLKLWDLDDI 155 (203)
Q Consensus 145 ~-----~i~iwd~~~~ 155 (203)
+ .+.+||+.+.
T Consensus 262 ~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 262 GSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSSBCCCEEEEETTTT
T ss_pred CCcccccEEEEcCCCC
Confidence 3 4888888654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.03 Score=42.25 Aligned_cols=136 Identities=13% Similarity=0.035 Sum_probs=70.8
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCeEEEee-------cCCccceEEEEEeeC---CCEEEEec-C-------CCeE
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKN---GRKVVCGS-Q-------SGTV 61 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~---~~~l~~~~-~-------d~~i 61 (203)
|+|.|+|+ ++++ ...|.|++++.. +.....+ .........|+++|+ +..|+.+. . ...|
T Consensus 23 i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v 100 (353)
T 2g8s_A 23 LAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV 100 (353)
T ss_dssp EEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred EEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence 57899998 5554 567999999853 3321111 112345789999995 44444432 2 2356
Q ss_pred EEEEcCCccc---ccee-eecc-----CCCceeEE-EeeCCCEEEEEcC-------------CCcEEEEEccCCc-----
Q 028806 62 LLYSWGYFKD---CSDR-FVGL-----SPNSVDAL-LKLDEDRVITGSE-------------NGLISLVGILPNR----- 113 (203)
Q Consensus 62 ~~wd~~~~~~---~~~~-~~~~-----~~~~v~~~-~~~~~~~l~~~~~-------------d~~i~~~d~~~~~----- 113 (203)
..|++..... ..+. +... .......+ |.|+|.+.++.+. .|.|.-++....-
T Consensus 101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~np 180 (353)
T 2g8s_A 101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNP 180 (353)
T ss_dssp EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCT
T ss_pred EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCC
Confidence 6666642111 1111 1110 11223456 8999965555432 2456666654210
Q ss_pred -------eeeee-ccCCCCceEEEEEeC-CCCeEEE
Q 028806 114 -------IIQPI-AEHSEYPIESLALSH-DRKFLGS 140 (203)
Q Consensus 114 -------~~~~~-~~~~~~~i~~i~~~~-~~~~l~~ 140 (203)
....+ .++ . ....++|+| ++++.++
T Consensus 181 f~~~~~~~~~i~a~G~-r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 181 FIKESGVRAEIWSYGI-R-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTTSTTSCTTEEEECC-S-EEEEEEEETTTTEEEEE
T ss_pred CcCCCCCCccEEEEcC-c-CccceEEECCCCCEEEE
Confidence 11112 122 2 478899999 5554443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.15 Score=42.58 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=81.7
Q ss_pred cCCEEEEEcCCCeEEEEEcCCCeEEEeec--CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC---
Q 028806 6 DAMKLLGTSGDGTLSVCNLRKNTVQTRSE--FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS--- 80 (203)
Q Consensus 6 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--- 80 (203)
++.+ ..|+..+.|..++..+++...... .....|.++...+++.+.+ ++. +-|.+|+... +. ...+....
T Consensus 417 ~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~-~~-~~~~~~~~~~~ 491 (781)
T 3v9f_A 417 EGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLAS-KK-VIHHYDTSNSQ 491 (781)
T ss_dssp TSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSS-SS-CCEEECTTTSS
T ss_pred CCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCC-Ce-EEecccCcccc
Confidence 4443 335555678888877765533221 1345688888777776544 444 5588888763 22 22222101
Q ss_pred --CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc---CCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 81 --PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE---HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 --~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
...+.++ ..++|.+.+ |+..+-|..|+..+++.. .+.. .....|.++...++|.+.+. +..|.|..||..+
T Consensus 492 ~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 492 LLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARN 568 (781)
T ss_dssp CSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTT
T ss_pred cccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCC
Confidence 3457777 566776554 444333777887665433 2321 11236889988888875544 4455548888765
Q ss_pred c
Q 028806 155 I 155 (203)
Q Consensus 155 ~ 155 (203)
.
T Consensus 569 ~ 569 (781)
T 3v9f_A 569 F 569 (781)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.071 Score=38.95 Aligned_cols=144 Identities=8% Similarity=0.052 Sum_probs=74.2
Q ss_pred cCCEEEEEcCC----CeEEEEEcCCCeEEE--eecCCccceEEEEEeeCCCEEEEecCC------CeEEEEEcCCccccc
Q 028806 6 DAMKLLGTSGD----GTLSVCNLRKNTVQT--RSEFSEEELTSVVLMKNGRKVVCGSQS------GTVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d----~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~ 73 (203)
++.+++.|+.+ ..+.+||+.+..-.. .+.........+ .-++..++.|+.+ ..+.+||..+ ..+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~--~~W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRT--ESW 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTT--TEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCC--Cce
Confidence 45566666643 568889988765332 222222222222 2366777777754 4688888764 233
Q ss_pred eeeeccCCCc--eeEEEeeCCCEEEEEcC---------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 74 DRFVGLSPNS--VDALLKLDEDRVITGSE---------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 74 ~~~~~~~~~~--v~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..+.. ...+ -.++...++.+++.|+. -..+.+||+.+.+-...-.......-.+++.. +++.++.|+
T Consensus 131 ~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 131 HTKPS-MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp EEECC-CSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred EeCCC-CcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeC
Confidence 33322 1111 11223346666666653 34588999887643322111111111222222 666677766
Q ss_pred CC-----CcEEEEeCCCc
Q 028806 143 HD-----SMLKLWDLDDI 155 (203)
Q Consensus 143 ~d-----~~i~iwd~~~~ 155 (203)
.+ ..+.+||+.+.
T Consensus 209 ~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 209 QNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EETTEEBCCEEEEETTTT
T ss_pred CCCCCCCceEEEeeCCCC
Confidence 43 35888888765
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.16 Score=41.47 Aligned_cols=151 Identities=7% Similarity=-0.096 Sum_probs=86.8
Q ss_pred cccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCC-EEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGR-KVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|.+.+..|+ +-...+.|+.+++........+...-.....+++...+. ++++-...+.|.+.++.. .....+...
T Consensus 355 d~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G--~~~~~l~~~ 432 (619)
T 3s94_A 355 DYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG--TMRKILISE 432 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECT
T ss_pred EEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC--CeEEEEEEC
Confidence 4555444443 333456777777665332223333334567889886544 445545678899998863 333333320
Q ss_pred CCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028806 80 SPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
.-.....+ +.|...+|+.... ...|...++. |.....+....-.....+++++++..|+.+. ..+.|..+++...
T Consensus 433 ~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 433 DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 33456777 7887556665543 3566666654 3323233221122578899999777777665 4567888887554
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.1 Score=37.99 Aligned_cols=145 Identities=8% Similarity=-0.034 Sum_probs=74.7
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCe-----EEEeecCCccceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCcc
Q 028806 6 DAMKLLGTSGD-----GTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFK 70 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~ 70 (203)
++++++.|+.+ ..+.+||+.+.. .+..+.........+ ..++..++.|+.+ ..+.+||+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~d~~~-- 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT--TLGDMIYVSGGFDGSRRHTSMERYDPNI-- 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCEEEEEETTT--
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE--EECCEEEEEcccCCCcccceEEEEcCCC--
Confidence 45566666643 468899987654 222222222222222 2366677777643 3688888763
Q ss_pred ccceeeeccCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC
Q 028806 71 DCSDRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 71 ~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 143 (203)
..+..+.. ...+ -.++...++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. .++..++.|+.
T Consensus 138 ~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~ 215 (301)
T 2vpj_A 138 DQWSMLGD-MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGF 215 (301)
T ss_dssp TEEEEEEE-CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCB
T ss_pred CeEEECCC-CCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCC
Confidence 23333322 1111 112233467777777654 458899988765433211111111112222 25667777765
Q ss_pred C-----CcEEEEeCCCcc
Q 028806 144 D-----SMLKLWDLDDIL 156 (203)
Q Consensus 144 d-----~~i~iwd~~~~~ 156 (203)
+ ..+.+||+.+..
T Consensus 216 ~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 216 DGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp CSSSBCCCEEEEETTTTE
T ss_pred CCCcccceEEEEeCCCCc
Confidence 3 468899987653
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.1 Score=38.12 Aligned_cols=142 Identities=11% Similarity=0.082 Sum_probs=73.9
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEEEe--ecCCccceEEEEEeeCCCEEEEecC---------CCeEEEEEcCC
Q 028806 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSWGY 68 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~ 68 (203)
++++++.|+.+ ..+.+||..+..-... +.........+ .-++..++.|+. -..+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV--EANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE--EECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 45566666654 4588999887654322 21111111122 236666666653 34588888864
Q ss_pred ccccceeeeccCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeee--eccCCCCceEEEEEeCCCCeEE
Q 028806 69 FKDCSDRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
..+..+.. ...+ -.++..-++.+++.|+.+ ..+.+||+.+.+-... +... .....++.+ ++..++
T Consensus 179 --~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~i~v 252 (306)
T 3ii7_A 179 --ETWTELCP-MIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK-GVTVKCAAV--GSIVYV 252 (306)
T ss_dssp --TEEEEECC-CSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC-BSCCEEEEE--TTEEEE
T ss_pred --CeEEECCC-ccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC-ccceeEEEE--CCEEEE
Confidence 23333322 1111 112233366677776653 4588999887643322 2211 111222223 667777
Q ss_pred EEeCC-----CcEEEEeCCCc
Q 028806 140 SISHD-----SMLKLWDLDDI 155 (203)
Q Consensus 140 ~~~~d-----~~i~iwd~~~~ 155 (203)
.|+.+ ..+.+||+.+.
T Consensus 253 ~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 253 LAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EECBCSSSBCCEEEEEETTTT
T ss_pred EeCcCCCeeeeeEEEEcCCCC
Confidence 77743 45888888664
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.085 Score=38.76 Aligned_cols=146 Identities=9% Similarity=-0.059 Sum_probs=72.6
Q ss_pred cCCEEEEEcCC--------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-C-----CeEEEEEcCCccc
Q 028806 6 DAMKLLGTSGD--------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-S-----GTVLLYSWGYFKD 71 (203)
Q Consensus 6 ~~~~l~~~~~d--------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~~wd~~~~~~ 71 (203)
++++++.|+.+ ..+.+||+.+.+-...-.....+....+...+++.++.|+. + ..+.+||..+ .
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKK--F 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTT--T
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCC--C
Confidence 34555666532 45888998876533221111111111122246667777765 2 4688888864 2
Q ss_pred cceeeeccCCCc--eeEEEeeCCCEEEEEcCCC-----cEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 72 CSDRFVGLSPNS--VDALLKLDEDRVITGSENG-----LISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 72 ~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
.+..+.. ...+ -.++...++++++.|+.++ .+.+||+.+.+-...-.......-.+++. -+++.++.|+.+
T Consensus 176 ~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 176 EWKELAP-MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEEECCC-CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEE
T ss_pred eEEECCC-CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCcc
Confidence 3333322 1111 1122344677777777643 47889987764332211111111112222 256677777653
Q ss_pred --------------CcEEEEeCCCc
Q 028806 145 --------------SMLKLWDLDDI 155 (203)
Q Consensus 145 --------------~~i~iwd~~~~ 155 (203)
..+.+||+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 254 TLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTTT
T ss_pred ccCcCCccccccccCcEEEecCCCC
Confidence 23677887654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.015 Score=43.66 Aligned_cols=143 Identities=12% Similarity=0.118 Sum_probs=82.2
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCc-cceEEEEEe--e-CCCEEEEe-cCCCeEEEEEcCCccccceeeec---c
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSE-EELTSVVLM--K-NGRKVVCG-SQSGTVLLYSWGYFKDCSDRFVG---L 79 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~--~-~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~---~ 79 (203)
.+++.++.||.|+-+|..+|+.+..++... .++....-. + ++..++.. ..||.|+.++... +.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccccce
Confidence 478888999999999999999998887541 222221100 1 22333333 5799999999764 322222211 0
Q ss_pred CCCceeE----EE-e----eCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCc------eEEEEEe-----CCCCeEE
Q 028806 80 SPNSVDA----LL-K----LDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP------IESLALS-----HDRKFLG 139 (203)
Q Consensus 80 ~~~~v~~----~~-~----~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~------i~~i~~~-----~~~~~l~ 139 (203)
...++.. +. . ..+..+++++.+|.+...|+.+|+.+..+....... ..|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1111111 00 0 156678899999999999999999998886542100 0111111 1235666
Q ss_pred EEeCCCcEEEEe
Q 028806 140 SISHDSMLKLWD 151 (203)
Q Consensus 140 ~~~~d~~i~iwd 151 (203)
.+..+..+.+.+
T Consensus 170 ig~~~y~v~~~~ 181 (339)
T 2be1_A 170 IGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEECEECC
T ss_pred EecceEEEEEEC
Confidence 666666666665
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.13 Score=37.65 Aligned_cols=144 Identities=8% Similarity=-0.029 Sum_probs=72.4
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEEEe--ecCCccceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCccccc
Q 028806 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~ 73 (203)
++++++.|+.+ ..+.+||+.+.+-... +.........+. -++.+++.|+.+ ..+.+||+.+ ..+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPER--NEW 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTT--TEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCC--CeE
Confidence 45555665532 4578888887654322 111111122222 266677777654 4588888763 233
Q ss_pred eeeeccCCC--ceeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC--
Q 028806 74 DRFVGLSPN--SVDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD-- 144 (203)
Q Consensus 74 ~~~~~~~~~--~v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-- 144 (203)
..+.. ... .-.++..-++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. -+++.++.|+.+
T Consensus 197 ~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~ 274 (308)
T 1zgk_A 197 RMITA-MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGH 274 (308)
T ss_dssp EECCC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSS
T ss_pred eeCCC-CCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCC
Confidence 32221 111 1112223366777777654 468899988765332211111101112222 256677777643
Q ss_pred ---CcEEEEeCCCc
Q 028806 145 ---SMLKLWDLDDI 155 (203)
Q Consensus 145 ---~~i~iwd~~~~ 155 (203)
..+.+||+.+.
T Consensus 275 ~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 275 TFLDSVECYDPDTD 288 (308)
T ss_dssp CBCCEEEEEETTTT
T ss_pred cccceEEEEcCCCC
Confidence 35778887654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.042 Score=38.60 Aligned_cols=135 Identities=8% Similarity=-0.082 Sum_probs=74.4
Q ss_pred CCEEEEEcCCCeEEEEEcCCCe------EEEee-cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cc---ee
Q 028806 7 AMKLLGTSGDGTLSVCNLRKNT------VQTRS-EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CS---DR 75 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~~------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~---~~ 75 (203)
..+|+....| ++++=....+. ....+ ++.-..+..++|+|++.+.++ .++.++-.+..+... .. .+
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3455666666 66665555432 11111 111246779999999986666 677766666532110 00 01
Q ss_pred eecc-CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-Ccee------eeeccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 76 FVGL-SPNSVDAL-LKLDEDRVITGSENGLISLVGILP-NRII------QPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 76 ~~~~-~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-~~~~------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
..+. .-....++ |.|+|.+.++ .||.|+-++..+ +... ..-...- ..+..+.+.|+|.+.+.. |+.
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw-~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGW-SGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSG-GGEEEEEECTTSCEEEEE--TTE
T ss_pred EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCC-CceEEEEECCCceEEEEe--CCc
Confidence 1110 01124667 7899988777 568888777532 1111 1111111 258899999999877766 777
Q ss_pred EEE
Q 028806 147 LKL 149 (203)
Q Consensus 147 i~i 149 (203)
++-
T Consensus 156 lyr 158 (236)
T 1tl2_A 156 FYK 158 (236)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.16 Score=37.33 Aligned_cols=106 Identities=11% Similarity=0.088 Sum_probs=53.6
Q ss_pred cCCEEEEEcCC-------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC------CCeEEEEEcCCcccc
Q 028806 6 DAMKLLGTSGD-------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDC 72 (203)
Q Consensus 6 ~~~~l~~~~~d-------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~ 72 (203)
++++++.|+.+ ..+.+||+.+.+-...-..........+...++.+++.|+. -..+.+||..+ ..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKK--GD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTT--TE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCC--CE
Confidence 45556666543 35788888876543221111111111122246667677664 23588898864 23
Q ss_pred ceeeeccCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCce
Q 028806 73 SDRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRI 114 (203)
Q Consensus 73 ~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~ 114 (203)
+..+.. ...+ -.++..-++.+++.|+.+ ..+.+||+.+.+-
T Consensus 187 W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 187 WKDLAP-MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EEEECC-CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred EEECCC-CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 333322 1111 112233466777777643 3477888877643
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.17 Score=36.87 Aligned_cols=144 Identities=10% Similarity=0.014 Sum_probs=72.5
Q ss_pred cCCEEEEEcCC-----CeEEEEEcCCCeEEEe--ecCCccceEEEEEeeCCCEEEEecCCC-----eEEEEEcCCccccc
Q 028806 6 DAMKLLGTSGD-----GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQSG-----TVLLYSWGYFKDCS 73 (203)
Q Consensus 6 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~ 73 (203)
++.+++.|+.+ ..+.+||..+.+-... +.........+ .-++..++.|+.++ .+.+||+.+ ..+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~d~~~--~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA--VLNGLLYAVGGFDGSTGLSSVEAYNIKS--NEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEEEEECSSCEEEEEEEEETTT--TEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE--EECCEEEEEcCCCCCccCceEEEEeCCC--CeE
Confidence 45556666543 3588899887653322 22111212222 23666777776543 577788753 233
Q ss_pred eeeeccCCCc--eeEEEeeCCCEEEEEcCC-------CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC
Q 028806 74 DRFVGLSPNS--VDALLKLDEDRVITGSEN-------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD 144 (203)
Q Consensus 74 ~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 144 (203)
..+.. ...+ -.++...++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. .++..++.|+.+
T Consensus 137 ~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 214 (302)
T 2xn4_A 137 FHVAP-MNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHD 214 (302)
T ss_dssp EEECC-CSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBS
T ss_pred eecCC-CCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCC
Confidence 33322 1111 112233466667766542 358889988764332211111111112222 256777777654
Q ss_pred -----CcEEEEeCCCc
Q 028806 145 -----SMLKLWDLDDI 155 (203)
Q Consensus 145 -----~~i~iwd~~~~ 155 (203)
..+.+||+.+.
T Consensus 215 ~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTN 230 (302)
T ss_dssp SSSBCCCEEEEETTTT
T ss_pred CCcccceEEEEeCCCC
Confidence 36888988764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.19 Score=37.25 Aligned_cols=109 Identities=8% Similarity=-0.028 Sum_probs=61.3
Q ss_pred CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCc
Q 028806 35 FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNR 113 (203)
Q Consensus 35 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~ 113 (203)
.....+..+++.+++.+++++...+.++-.|- .+.....+.......+..+ +.+++..++ ++.+|.+++.....++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSE 236 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCC
Confidence 34456889999998888777654433333332 1333333322034456667 678876554 4556777666322233
Q ss_pred eeeeeccC---CCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 114 IIQPIAEH---SEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 114 ~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
.-..+... ....+..+.+.+++..++++. ++.|
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence 32222211 122588899998877666554 6666
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.21 Score=36.58 Aligned_cols=144 Identities=11% Similarity=-0.012 Sum_probs=72.1
Q ss_pred cCCEEEEEcC----C-----CeEEEEEcCCCeEEEe--ecCCccceEEEEEeeCCCEEEEecCC-----CeEEEEEcCCc
Q 028806 6 DAMKLLGTSG----D-----GTLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-----GTVLLYSWGYF 69 (203)
Q Consensus 6 ~~~~l~~~~~----d-----~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~ 69 (203)
++++++.|+. + ..+.+||+.+.+-... +.........+. -++..++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~- 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPER- 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTT-
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCC-
Confidence 4455566654 2 3578888887653322 111112222222 266677776643 3578888764
Q ss_pred cccceeeeccCCCc--eeEEEeeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 70 KDCSDRFVGLSPNS--VDALLKLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 70 ~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..+..+.. ...+ -.++..-++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++.. ++..++.|+
T Consensus 147 -~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 223 (308)
T 1zgk_A 147 -DEWHLVAP-MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGG 223 (308)
T ss_dssp -TEEEECCC-CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred -CeEeECCC-CCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeC
Confidence 22222221 1111 112223366677777653 4588999877643322111111111122222 666777776
Q ss_pred CC-----CcEEEEeCCCc
Q 028806 143 HD-----SMLKLWDLDDI 155 (203)
Q Consensus 143 ~d-----~~i~iwd~~~~ 155 (203)
.+ ..+.+||+.+.
T Consensus 224 ~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETE 241 (308)
T ss_dssp BCSSSBCCCEEEEETTTT
T ss_pred CCCCCccceEEEEeCCCC
Confidence 54 45889998765
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.2 Score=37.69 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=58.4
Q ss_pred cceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee---eccCCCceeEE-EeeC---CCEEEEEcCC------CcE
Q 028806 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF---VGLSPNSVDAL-LKLD---EDRVITGSEN------GLI 104 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~v~~~-~~~~---~~~l~~~~~d------~~i 104 (203)
...+.++|.|+++++++ ...+.|++++ ......+..+ .. .......+ ++|+ +..|+++... ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~-g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHR-GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeec-CCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45679999999986555 4569999988 3211111111 11 23445667 8887 5566555432 567
Q ss_pred EEEEccCCc-----ee-eeecc--CCCCceEEEEEeCCCCeEEEEe
Q 028806 105 SLVGILPNR-----II-QPIAE--HSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 105 ~~~d~~~~~-----~~-~~~~~--~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..+++..+. .+ ..+.. ........++|.|+|.++++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 778776431 11 11331 1111246799999997666543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.45 Score=39.71 Aligned_cols=140 Identities=12% Similarity=0.106 Sum_probs=79.1
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEee---cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec--cCCCce
Q 028806 10 LLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG--LSPNSV 84 (203)
Q Consensus 10 l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~v 84 (203)
|..|+.++-|.+|+..++...... ......|.++...+++.+.+ |+..+-+..++..+. ....+.. .....|
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~v 452 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK--KFQIIELEKNELLDV 452 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC--EEEECCSTTTCCCCE
T ss_pred EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC--cEEEeccCCCCCCeE
Confidence 334444456788887654332111 11235688888777776544 555566888887532 2222221 023567
Q ss_pred eEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccC----CCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 85 DAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEH----SEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.++ ..+++. |..|+. +-|.+|+..+++........ ....|.++...++|++.+ ++.++-|..|+..+.
T Consensus 453 ~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 453 RVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ 525 (781)
T ss_dssp EEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCC
T ss_pred EEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC
Confidence 777 455555 455555 45888998776543322111 023688999888887544 444344777887654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.21 Score=37.62 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=58.0
Q ss_pred ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cceee---eccCCCceeEE-EeeC---CCEEEEEcC----C---
Q 028806 37 EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRF---VGLSPNSVDAL-LKLD---EDRVITGSE----N--- 101 (203)
Q Consensus 37 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~---~~~~~~~v~~~-~~~~---~~~l~~~~~----d--- 101 (203)
-...+.++|.|+++++++ ...+.|++++.. +. .+..+ .. .......+ ++|+ +..|+++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~--G~~~~~~~~v~~~-g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPS--GKKLVASFDVANV-GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECSS--CEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCC--CceEeeccceeec-CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 345789999999985555 556999988742 22 11111 11 22346667 8887 555555443 2
Q ss_pred -CcEEEEEccCC-------cee-eeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 102 -GLISLVGILPN-------RII-QPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 102 -~~i~~~d~~~~-------~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
..|..|++... +.+ ..+..........|+|.|+|.++++.+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 56777776543 111 112211111245799999998666643
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.084 Score=42.31 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=65.0
Q ss_pred ceEEEEEeeCCCEEEEecC-CCeEEEEEcCCccc-----c-------ceeeeccCCCceeEEEeeCCCEEEEEcCCCcEE
Q 028806 39 ELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKD-----C-------SDRFVGLSPNSVDALLKLDEDRVITGSENGLIS 105 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~-----~-------~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~ 105 (203)
....+..+|||++++.++. +.++.++|+..... . ...... .-++....|.++|.-..+.-.|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEE
Confidence 3567889999999888765 78999999863111 1 111122 23444444899995555566799999
Q ss_pred EEEccCC----------ceeeeeccCCCCceEEEEE------eCCCCeEEEEe
Q 028806 106 LVGILPN----------RIIQPIAEHSEYPIESLAL------SHDRKFLGSIS 142 (203)
Q Consensus 106 ~~d~~~~----------~~~~~~~~~~~~~i~~i~~------~~~~~~l~~~~ 142 (203)
.|++... ..+..+..|-. +-.+.- .|+|++|++..
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~Yq--pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQ--PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSC--EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEeccHHHHHhcCccCCeeeeccccccC--CcccccCCCccCCCCccEEEEec
Confidence 9999753 45566666632 333332 56788887765
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.29 Score=35.84 Aligned_cols=146 Identities=8% Similarity=-0.003 Sum_probs=72.1
Q ss_pred cCCEEEEEcC-----C------CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC--------CeEEEEEc
Q 028806 6 DAMKLLGTSG-----D------GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--------GTVLLYSW 66 (203)
Q Consensus 6 ~~~~l~~~~~-----d------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~wd~ 66 (203)
++++++.|+. . ..+.+||..+.+-...-.....+....+..-++..++.|+.+ ..+.+||.
T Consensus 45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~ 124 (315)
T 4asc_A 45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDR 124 (315)
T ss_dssp TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEET
T ss_pred CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECC
Confidence 5666666663 1 127788888765432111111111111112256666676632 45888888
Q ss_pred CCccccceeeeccCCCc--eeEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeE
Q 028806 67 GYFKDCSDRFVGLSPNS--VDALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFL 138 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 138 (203)
.+. .+..+.. -..+ -.++...++.+++.|+. -..+.+||+.+.+-...-.......-.+++ .-+++.+
T Consensus 125 ~~~--~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iy 200 (315)
T 4asc_A 125 LSF--KWGESDP-LPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRII 200 (315)
T ss_dssp TTT--EEEECCC-CSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEE
T ss_pred CCC--cEeECCC-CCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEE
Confidence 642 2333222 1111 11223456677777765 246889998876433221111111111222 2266777
Q ss_pred EEEeCCC-----cEEEEeCCCc
Q 028806 139 GSISHDS-----MLKLWDLDDI 155 (203)
Q Consensus 139 ~~~~~d~-----~i~iwd~~~~ 155 (203)
+.|+.++ .+.+||+.+.
T Consensus 201 v~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 201 VAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EEEEECSSSEEEEEEEEETTTT
T ss_pred EEeccCCCCccceEEEEECCCC
Confidence 7777543 4788888665
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.37 Score=35.48 Aligned_cols=137 Identities=9% Similarity=0.078 Sum_probs=77.5
Q ss_pred ccccCCEEEEEc--CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC--------------CeEEEEEc
Q 028806 3 FAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--------------GTVLLYSW 66 (203)
Q Consensus 3 ~sp~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~~wd~ 66 (203)
|++++..|+... .++.|...+....... .+.. .. +--+++++.+|+.+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCE-EEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCE-EccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 456777776653 3566777776544322 2221 11 23457889988877653 24555555
Q ss_pred CCccccceeeeccCCCceeEEEeeCCCEEEEEc--C--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 67 GYFKDCSDRFVGLSPNSVDALLKLDEDRVITGS--E--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~--~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
. +.....+.. .. ...+++++++|+... . ...|...++.. .....+..+ . + ..++|+++.|+..+
T Consensus 96 d--g~~~~~l~~-~~---~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~-~--~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 96 N--GHGSTVLDP-DP---CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNH-Y--L--FTCNTSDRYFYYNN 163 (302)
T ss_dssp T--SCCCEEEEC-SC---EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESS-C--C--CCSEEETTEEEEEC
T ss_pred C--CCcceEeec-CC---ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCC-C--c--eEeeEECCEEEEEe
Confidence 4 333333432 21 113688999999876 2 34465566553 333444433 2 2 45677888887665
Q ss_pred C-CCcEEEEeCCCcc
Q 028806 143 H-DSMLKLWDLDDIL 156 (203)
Q Consensus 143 ~-d~~i~iwd~~~~~ 156 (203)
. ...|.+-++.+..
T Consensus 164 ~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 164 PKNGQLYRYDTASQS 178 (302)
T ss_dssp TTTCCEEEEETTTTE
T ss_pred CCCceEEEEECCCCC
Confidence 4 5678887776654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.5 Score=35.19 Aligned_cols=137 Identities=8% Similarity=-0.015 Sum_probs=63.8
Q ss_pred CeEEEEEcCCCeEE--EeecCCccceEEEEEeeCCCEEEEecC------CCeEEEEEcCCccccceeeecc--CCCcee-
Q 028806 17 GTLSVCNLRKNTVQ--TRSEFSEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGYFKDCSDRFVGL--SPNSVD- 85 (203)
Q Consensus 17 ~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~--~~~~v~- 85 (203)
..+.+||+.+.+-. ..+......-.+++. -++.+++.|+. ...+.+||+......+..+... ......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 57889998876432 222211111022222 25666666653 3457778762222333333220 111111
Q ss_pred EEEeeCCCEEEEEcCC----------------------CcEEEEEccCCce--eeeeccCCCCceEEEEEeCCCCeEEEE
Q 028806 86 ALLKLDEDRVITGSEN----------------------GLISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 86 ~~~~~~~~~l~~~~~d----------------------~~i~~~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
++...++.+++.|+.+ ..+.+||+.+.+- +..+..... . ..+...+++.++.|
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~--~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA-Y--GVSLPWNNSLLIIG 323 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB-S--SEEEEETTEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc-c--ceeEEeCCEEEEEe
Confidence 1334566777777632 2477899876542 333332211 1 12233467777888
Q ss_pred eCCC------cEEEEeCCCccc
Q 028806 142 SHDS------MLKLWDLDDILK 157 (203)
Q Consensus 142 ~~d~------~i~iwd~~~~~~ 157 (203)
+.++ .|.++++++.+.
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSC
T ss_pred eeCCCCCEeeeEEEEEEcCcEe
Confidence 8543 355567765543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.48 Score=34.71 Aligned_cols=144 Identities=8% Similarity=-0.018 Sum_probs=70.9
Q ss_pred cCCEEEEEcC----CC-------eEEEEEcCCCeEEEe--ecCCccceEEEEEeeCCCEEEEecCC-------CeEEEEE
Q 028806 6 DAMKLLGTSG----DG-------TLSVCNLRKNTVQTR--SEFSEEELTSVVLMKNGRKVVCGSQS-------GTVLLYS 65 (203)
Q Consensus 6 ~~~~l~~~~~----d~-------~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~wd 65 (203)
++.+++.|+. ++ .+.+||..+.+-... +....... +++ .-++..++.|+.+ ..+.+||
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd 133 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLG-EVDDKIYVVAGKDLQTEASLDSVLCYD 133 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEE-EETTEEEEEEEEBTTTCCEEEEEEEEE
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceE-EECCEEEEEcCccCCCCcccceEEEEe
Confidence 5566677762 11 277888877654322 11111111 222 2256667777653 2577788
Q ss_pred cCCccccceeeeccCCCce--eEEEeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe
Q 028806 66 WGYFKDCSDRFVGLSPNSV--DALLKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 137 (203)
..+ ..+..+.. ...+. .++...++.+++.|+. -..+.+||+.+.+-...-.......-.+++. -++..
T Consensus 134 ~~~--~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i 209 (318)
T 2woz_A 134 PVA--AKWSEVKN-LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKI 209 (318)
T ss_dssp TTT--TEEEEECC-CSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE
T ss_pred CCC--CCEeECCC-CCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEE
Confidence 753 23333322 11111 1123456777777764 2458899988765332211111111122222 25677
Q ss_pred EEEEeCC-----CcEEEEeCCCc
Q 028806 138 LGSISHD-----SMLKLWDLDDI 155 (203)
Q Consensus 138 l~~~~~d-----~~i~iwd~~~~ 155 (203)
++.|+.+ ..+.+||+.+.
T Consensus 210 yv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 210 VIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEcCcCCCCccceEEEEECCCC
Confidence 7777643 34778887665
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.7 Score=38.20 Aligned_cols=148 Identities=11% Similarity=0.088 Sum_probs=76.3
Q ss_pred cCCEEEEEcCC------CeEEEEEcCCCeEEEeecCCccce-EEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceee
Q 028806 6 DAMKLLGTSGD------GTLSVCNLRKNTVQTRSEFSEEEL-TSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 6 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~ 76 (203)
++++++.|+.+ +.+.+||..+..-...-.....+. .+++...++..++.|+.++ .+.+||..+ ..+..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t--~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTE--EIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTT--TEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCC--CceEEc
Confidence 56666776643 357888888764332211111111 1222224778888887654 688898864 233332
Q ss_pred ecc-----CCCceeEE-EeeC-CCEEEEEcC--C-----CcEEEEEccCCce-----eeeec---cCCCCceEEEEEeCC
Q 028806 77 VGL-----SPNSVDAL-LKLD-EDRVITGSE--N-----GLISLVGILPNRI-----IQPIA---EHSEYPIESLALSHD 134 (203)
Q Consensus 77 ~~~-----~~~~v~~~-~~~~-~~~l~~~~~--d-----~~i~~~d~~~~~~-----~~~~~---~~~~~~i~~i~~~~~ 134 (203)
... ......++ +... +.+++.|+. + ..+.+||+.+... -..+. ...... .+++...+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~-~~~~~~~~ 607 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG-SQIKYITP 607 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS-CEEEEEET
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc-ceEEEeCC
Confidence 210 11122223 4444 667777765 2 4588999887761 11111 111111 22333333
Q ss_pred CCeEEEEeC--------CCcEEEEeCCCcc
Q 028806 135 RKFLGSISH--------DSMLKLWDLDDIL 156 (203)
Q Consensus 135 ~~~l~~~~~--------d~~i~iwd~~~~~ 156 (203)
+..++.|+. ...|.+||+.+..
T Consensus 608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 608 RKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp TEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred CEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 677777763 2458888887653
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.8 Score=35.74 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=90.6
Q ss_pred cccCCEEEEEc-------CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC---CEEEEecC---CCeEEEEEcCCc-
Q 028806 4 AADAMKLLGTS-------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG---RKVVCGSQ---SGTVLLYSWGYF- 69 (203)
Q Consensus 4 sp~~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---d~~i~~wd~~~~- 69 (203)
+++.++++..+ -.|.+.+|+.+.+. -+.+++|......+....+. ..++.+.. .+.+.+-++...
T Consensus 159 d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~ 237 (494)
T 1bpo_A 159 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (494)
T ss_dssp CTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCC
T ss_pred CCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCc
Confidence 56677664332 13678899987653 46777877655444432111 23333333 268888888542
Q ss_pred -cc------cceeeec--cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 70 -KD------CSDRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 70 -~~------~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
+. .+..+.. ....-.-++ .++....++..+.-|.|++||++++.++..-+-..+ .|..-+.+....=++
T Consensus 238 ~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~ 316 (494)
T 1bpo_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGII 316 (494)
T ss_dssp TTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEE
T ss_pred cCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC-ceEEecccCCCCcEE
Confidence 11 1111111 011223344 688888999999999999999999999977766544 677666666555566
Q ss_pred EEeCCCcEEEEeCC
Q 028806 140 SISHDSMLKLWDLD 153 (203)
Q Consensus 140 ~~~~d~~i~iwd~~ 153 (203)
.....|.|.--.+.
T Consensus 317 ~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 317 GVNRKGQVLSVCVE 330 (494)
T ss_dssp EEETTCEEEEEEEC
T ss_pred EEccCceEEEEEEc
Confidence 66677777665544
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=94.94 E-value=1.8 Score=38.12 Aligned_cols=131 Identities=8% Similarity=0.057 Sum_probs=75.6
Q ss_pred eEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee-eccCCCceeEE-EeeC---
Q 028806 18 TLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-VGLSPNSVDAL-LKLD--- 91 (203)
Q Consensus 18 ~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~v~~~-~~~~--- 91 (203)
.|++.+......+...... ...|...+.+ +.+++.++ .+.+.++.+.. +...... .. -...+.|+ +.|.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~-~~L~~~~~~~-l~~evscl~i~~~~~~ 567 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHP-QELRQISHTE-MEHEVACLDITPLGDS 567 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEET-TEEEEEEEEE-CSSCEEEEECCCCSSS
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeC-CceeeecccC-CCCceEEEEeecCCCC
Confidence 3566665544445445433 2346555543 34666654 57788887753 2211111 11 34578888 5542
Q ss_pred ---CCEEEEEcC-CCcEEEEEccCCceeeeeccCCCCceEEEEEeC--CCCeEEEEeCCCcEEEEeCC
Q 028806 92 ---EDRVITGSE-NGLISLVGILPNRIIQPIAEHSEYPIESLALSH--DRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 92 ---~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~iwd~~ 153 (203)
+.+++.|.. |++|+++++.+.+.+............++.+.. ...+|..|-.||.+.-+.+.
T Consensus 568 ~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 568 NGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred cccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 478999997 999999999876655433222112344444432 33578888889987666543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.94 Score=34.07 Aligned_cols=106 Identities=9% Similarity=0.025 Sum_probs=59.2
Q ss_pred CccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc-cceee----eccCCCceeEE-EeeC---CCEEEEE---cCCCc
Q 028806 36 SEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD-CSDRF----VGLSPNSVDAL-LKLD---EDRVITG---SENGL 103 (203)
Q Consensus 36 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~----~~~~~~~v~~~-~~~~---~~~l~~~---~~d~~ 103 (203)
.-...+.|+|.|++.++++--..|.|++++...... .+..+ .. .......+ ++|+ +..|++. .....
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~-g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPS-GEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCB-TTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeec-CCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 345678999999999887776589999887542111 11111 11 23456667 7885 3444432 23445
Q ss_pred EEEEEccCC----------cee-eeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 104 ISLVGILPN----------RII-QPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 104 i~~~d~~~~----------~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
|.-|.+..+ +.+ ..+..........|.|.|+|.+.++.+
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 555655431 111 112211111345799999998766654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=1 Score=33.94 Aligned_cols=130 Identities=8% Similarity=0.082 Sum_probs=76.4
Q ss_pred CCeEEEEEcCC--Ce--EEEeecCC-ccceEEEEEeeCCCEEEEec-----------------CCCeEEEEEcCCccccc
Q 028806 16 DGTLSVCNLRK--NT--VQTRSEFS-EEELTSVVLMKNGRKVVCGS-----------------QSGTVLLYSWGYFKDCS 73 (203)
Q Consensus 16 d~~i~vw~~~~--~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~~wd~~~~~~~~ 73 (203)
..+|.+|.+.. +. .+..+.+. -...+.+++.++|.+.++.. ..+.|+.++. +. +
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~---~~-~ 213 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP---ND-V 213 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT---TC-C
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC---Ce-E
Confidence 45677776653 22 23344332 23578999999998777654 1244555553 22 2
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccC-Cce--eeeeccCCCCceEEEEEeC-CCCeEEEEeCC-Cc
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILP-NRI--IQPIAEHSEYPIESLALSH-DRKFLGSISHD-SM 146 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~-~~~--~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d-~~ 146 (203)
..+.. .-.....+ |+|+++.++.+. ..+.|..|++.. +.. ...+.. ....-.+++.+ +|++.+++..+ +.
T Consensus 214 ~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~lwva~~~~g~~ 290 (355)
T 3sre_A 214 RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGDLWVGCHPNGMR 290 (355)
T ss_dssp EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCCEEEEEESCHHH
T ss_pred EEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCcEEEEecCCceE
Confidence 33332 33445667 899998888765 468899999863 332 123322 22467789999 58877766544 34
Q ss_pred EEEEeC
Q 028806 147 LKLWDL 152 (203)
Q Consensus 147 i~iwd~ 152 (203)
|..|+.
T Consensus 291 v~~~~P 296 (355)
T 3sre_A 291 IFFYDA 296 (355)
T ss_dssp HHSCCT
T ss_pred EEEECC
Confidence 444443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.31 E-value=1.1 Score=33.28 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=27.1
Q ss_pred cCCEEEEEcC-C---------CeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecCC
Q 028806 6 DAMKLLGTSG-D---------GTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQS 58 (203)
Q Consensus 6 ~~~~l~~~~~-d---------~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 58 (203)
++++++.|+. + ..+.+||+.+.+-...-... ..+....+...++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 3455566654 1 45888998876543221111 1221122222567777777754
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.83 E-value=1.8 Score=33.73 Aligned_cols=104 Identities=9% Similarity=0.072 Sum_probs=57.4
Q ss_pred cceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc--ceeeecc-----CCCceeEE-EeeC---CCEEEEEcC------
Q 028806 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC--SDRFVGL-----SPNSVDAL-LKLD---EDRVITGSE------ 100 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~-----~~~~v~~~-~~~~---~~~l~~~~~------ 100 (203)
...+.|+|.|+|+++++-...+.|++++... +.. +..+... ....+..+ ++|+ +..|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999999877765445788887532 221 1111110 12345567 8885 555555442
Q ss_pred -------CCcEEEEEccCC-------ceee-eeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 101 -------NGLISLVGILPN-------RIIQ-PIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 101 -------d~~i~~~d~~~~-------~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
...|.-+++..+ +.+. .+..........|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555655332 1111 12221112468899999998766654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=2.7 Score=34.77 Aligned_cols=148 Identities=8% Similarity=0.048 Sum_probs=78.2
Q ss_pred cCCEEEEEcCC----CeEEEEEcCCCeEEEee-c-----CCccc-eEEEEEee-CCCEEEEecCC------CeEEEEEcC
Q 028806 6 DAMKLLGTSGD----GTLSVCNLRKNTVQTRS-E-----FSEEE-LTSVVLMK-NGRKVVCGSQS------GTVLLYSWG 67 (203)
Q Consensus 6 ~~~~l~~~~~d----~~i~vw~~~~~~~~~~~-~-----~~~~~-v~~~~~~~-~~~~l~~~~~d------~~i~~wd~~ 67 (203)
++.+++.|+.+ ..+.+||..++.-...- . ....+ -.+++..+ ++..++.|+.+ ..+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 45566666642 45888888776433221 1 11111 12333333 67777777653 357788876
Q ss_pred Cccccceeeecc--CCCceeEEEeeCCCEEEEEcCCC--cEEEEEccCCceeeee-----ccCCCCceEEEEEeCC-CCe
Q 028806 68 YFKDCSDRFVGL--SPNSVDALLKLDEDRVITGSENG--LISLVGILPNRIIQPI-----AEHSEYPIESLALSHD-RKF 137 (203)
Q Consensus 68 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~-----~~~~~~~i~~i~~~~~-~~~ 137 (203)
+ ..+..+... ......++.-.++.+++.|+.++ .+.+||+.+..-...- ... .....++.+..+ +..
T Consensus 477 t--~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~-r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 477 T--REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN-SLVSAGLEFDPVSKQG 553 (695)
T ss_dssp T--TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS-CCBSCEEEEETTTTEE
T ss_pred C--CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc-ccceeEEEEeCCCCEE
Confidence 4 233332220 11111112224788888887654 6899998876533221 111 112233556655 566
Q ss_pred EEEEeC--C-----CcEEEEeCCCcc
Q 028806 138 LGSISH--D-----SMLKLWDLDDIL 156 (203)
Q Consensus 138 l~~~~~--d-----~~i~iwd~~~~~ 156 (203)
++.|+. + ..+.+||+.+..
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCc
Confidence 677764 2 358889987665
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=93.26 E-value=4.1 Score=35.93 Aligned_cols=141 Identities=14% Similarity=0.149 Sum_probs=77.3
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-cCCCceeE
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-LSPNSVDA 86 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~v~~ 86 (203)
+|++|-. ..|++|++...+.+. ..... ..|..+.....++++++|..-..+.++.++.....+..+.. .....+++
T Consensus 897 ~Lla~ig-~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta 974 (1158)
T 3ei3_A 897 KLLASIN-STVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSA 974 (1158)
T ss_dssp EEEEEET-TEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEE
T ss_pred EEEEEcC-CEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEE
Confidence 4444433 689999998654332 11111 11223333345788999887777777665433333333332 13344566
Q ss_pred EEeeCCCEEEEEcCCCcEEEEEccCC--------ceeeeeccCCCCceEEEE---EeCC---------CCeEEEEeCCCc
Q 028806 87 LLKLDEDRVITGSENGLISLVGILPN--------RIIQPIAEHSEYPIESLA---LSHD---------RKFLGSISHDSM 146 (203)
Q Consensus 87 ~~~~~~~~l~~~~~d~~i~~~d~~~~--------~~~~~~~~~~~~~i~~i~---~~~~---------~~~l~~~~~d~~ 146 (203)
+..-+...++.+..+|.|.++..... +....-.-|.+..|+++. +.+. ...++.++.+|.
T Consensus 975 ~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~Gs 1054 (1158)
T 3ei3_A 975 VEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGM 1054 (1158)
T ss_dssp EEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSC
T ss_pred EEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCE
Confidence 62223457888899999998876431 111111223233577765 3332 234777888999
Q ss_pred EEEEe
Q 028806 147 LKLWD 151 (203)
Q Consensus 147 i~iwd 151 (203)
|-+.-
T Consensus 1055 Ig~l~ 1059 (1158)
T 3ei3_A 1055 IGLVT 1059 (1158)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87763
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=93.14 E-value=2.5 Score=33.10 Aligned_cols=144 Identities=10% Similarity=0.111 Sum_probs=89.3
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
.+|..+.||.-. ..++.|+|+++...+..+.-. ..|..=.|-.+..+-+++ +..|+.|++.....+...|.. |..
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~l~lVT--~taVyHWsi~~~s~P~kvFdR-~~~ 147 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDR-HSS 147 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTEEEEEC--SSEEEEEESSSSCCCEEEEEC-CGG
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCCeEEEEc--CCeeEEecccCCCCchhheec-chh
Confidence 467777777655 589999999998887766643 356666776554433332 467999999654456666654 432
Q ss_pred ----ceeEE-EeeCCCEEEEEcC-------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-----CeEEEEeC--
Q 028806 83 ----SVDAL-LKLDEDRVITGSE-------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-----KFLGSISH-- 143 (203)
Q Consensus 83 ----~v~~~-~~~~~~~l~~~~~-------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-----~~l~~~~~-- 143 (203)
.|..- .+++.++++..+- .|.+.+|..+. +..+.+.+|.. .-..+-.+| +.++.+..
T Consensus 148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa---~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA---SFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEE---EEEEEECTTCSSEEEEEEEEECST
T ss_pred cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeee---eeEEEecCCCCCCceEEEEEEecC
Confidence 22222 4788888775432 47788998764 45556777732 223333333 23333332
Q ss_pred -CCcEEEEeCCCc
Q 028806 144 -DSMLKLWDLDDI 155 (203)
Q Consensus 144 -d~~i~iwd~~~~ 155 (203)
.+.++|-++...
T Consensus 224 ~g~kLhi~Ei~~~ 236 (494)
T 1bpo_A 224 AGGKLHIIEVGTP 236 (494)
T ss_dssp TCCEEEEEECSCC
T ss_pred CCcEEEEEEcCCC
Confidence 378999998554
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.33 Score=36.39 Aligned_cols=109 Identities=7% Similarity=-0.011 Sum_probs=61.9
Q ss_pred CEEEEecCCCeEEEEEcCCccccceeeeccC-CCceeEEE---eeCCCEEEEE--cCCCcEEEEEccCCceeeeeccCC-
Q 028806 50 RKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS-PNSVDALL---KLDEDRVITG--SENGLISLVGILPNRIIQPIAEHS- 122 (203)
Q Consensus 50 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~v~~~~---~~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~- 122 (203)
..++.++.||.|+-+|..+ ++..-.+.. . ..++...- .+.+..++.+ +.||.|..++..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~-~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHIIWSIEP-ENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEEEEECG-GGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEecC-CccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 3677888899999998865 444444443 2 11221111 1122234433 579999999988875544332210
Q ss_pred --CCceEE---EEE-e----CCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 123 --EYPIES---LAL-S----HDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 123 --~~~i~~---i~~-~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
..++.. ... . ..+..+++++.++.+...|+++++..-.
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 012221 000 0 0455778889999999999998876533
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=91.64 E-value=2.8 Score=37.85 Aligned_cols=146 Identities=10% Similarity=0.121 Sum_probs=84.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC-
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP- 81 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~- 81 (203)
.+|..+.||.-. ..++.|+++.+...+..+.- ...|..=.|-.....-+++ +..|+.|++.....+...|.. |.
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~P~k~fdR-~~~ 147 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDR-HSS 147 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc--CCeEEEeccCCCCccHHHHhc-chh
Confidence 467777777654 57899999988766655543 3456666776544433332 457999999643455555544 42
Q ss_pred ---CceeEE-EeeCCCEEEEEc-------CCCcEEEEEccCCceeeeeccCCCCceEEEEEe--CCC-CeEEEEe---CC
Q 028806 82 ---NSVDAL-LKLDEDRVITGS-------ENGLISLVGILPNRIIQPIAEHSEYPIESLALS--HDR-KFLGSIS---HD 144 (203)
Q Consensus 82 ---~~v~~~-~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~--~~~-~~l~~~~---~d 144 (203)
..|..- .+++.++++..+ ..|.+.+|..+. +..+.+.+|.. ....+... +.. ..++.+. ..
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~-~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA-SFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHh-hhheeccCCCCCCceEEEEEEecCCC
Confidence 223333 478888877543 357899998764 33445566632 22222221 111 2222222 23
Q ss_pred CcEEEEeCCCc
Q 028806 145 SMLKLWDLDDI 155 (203)
Q Consensus 145 ~~i~iwd~~~~ 155 (203)
+.++|-++...
T Consensus 226 ~kLhi~Ei~~~ 236 (1630)
T 1xi4_A 226 GKLHIIEVGTP 236 (1630)
T ss_pred ceEEEEecCCC
Confidence 68899888654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=91.45 E-value=2.2 Score=34.42 Aligned_cols=69 Identities=10% Similarity=0.134 Sum_probs=49.0
Q ss_pred eEE-EeeCCCEEEEEcC-CCcEEEEEccC------Cce-------eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 85 DAL-LKLDEDRVITGSE-NGLISLVGILP------NRI-------IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~~-d~~i~~~d~~~------~~~-------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
..+ .+|+|++++.++. +.++.+++++. ++. ....... -.....+|.++|.-..+...|..|..
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G--lGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG--LGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC--SCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC--CcccEEEECCCCceEeeeeecceEEE
Confidence 345 7999999988765 77899999873 111 2233332 24677899999955556668999999
Q ss_pred EeCCCc
Q 028806 150 WDLDDI 155 (203)
Q Consensus 150 wd~~~~ 155 (203)
|++...
T Consensus 404 Wni~~a 409 (638)
T 3sbq_A 404 WNMEEA 409 (638)
T ss_dssp EEHHHH
T ss_pred EeccHH
Confidence 998654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=91.23 E-value=3.9 Score=36.97 Aligned_cols=146 Identities=14% Similarity=0.072 Sum_probs=76.6
Q ss_pred cccCCEEEEEc-------CCCeEEEEEcCCCeEEEeecCCccceEEEEEe--eC-CCEEEEecC---CCeEEEEEcCCc-
Q 028806 4 AADAMKLLGTS-------GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM--KN-GRKVVCGSQ---SGTVLLYSWGYF- 69 (203)
Q Consensus 4 sp~~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---d~~i~~wd~~~~- 69 (203)
+++.++++..+ -.|.+.+|+...+ ..+.+++|.+....+... +. ...++.+.. .+.+.+-++...
T Consensus 159 d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~ 237 (1630)
T 1xi4_A 159 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (1630)
T ss_pred CCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCc
Confidence 56667654332 2478889988754 335566665544444332 11 122222221 267888887532
Q ss_pred -cc------cceeeec--cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 70 -KD------CSDRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 70 -~~------~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
+. .+..+.. ....-.-++ .++.-..++..+.-|.|++||+.++.++..-+-... .|...+-+....=++
T Consensus 238 ~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~ 316 (1630)
T 1xi4_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGII 316 (1630)
T ss_pred cCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCC-ceEEeccCCCCCceE
Confidence 11 1111111 001112233 577777888899999999999999988765544423 454444333322233
Q ss_pred EEeCCCcEEEEe
Q 028806 140 SISHDSMLKLWD 151 (203)
Q Consensus 140 ~~~~d~~i~iwd 151 (203)
.....|.|.--.
T Consensus 317 ~vnr~G~vl~v~ 328 (1630)
T 1xi4_A 317 GVNRKGQVLSVC 328 (1630)
T ss_pred EEcCCceEEEEE
Confidence 333455444433
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=90.45 E-value=4.4 Score=30.32 Aligned_cols=51 Identities=8% Similarity=0.092 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCcEEEEEccCCceeee--eccCCCCceEEEEEeCCCCeEEEE
Q 028806 91 DEDRVITGSENGLISLVGILPNRIIQP--IAEHSEYPIESLALSHDRKFLGSI 141 (203)
Q Consensus 91 ~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~ 141 (203)
++.++++....+.|...++..++.... +.......+..+++.|+|.++++.
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 466776666778888888876543322 211112268899999999865543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.37 E-value=4.9 Score=31.50 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=30.2
Q ss_pred CcccccCC-EEEEEcCCCeEEEEEcCCCe---EEEeec---------CCccceEEEEEeeC
Q 028806 1 MTFAADAM-KLLGTSGDGTLSVCNLRKNT---VQTRSE---------FSEEELTSVVLMKN 48 (203)
Q Consensus 1 l~~sp~~~-~l~~~~~d~~i~vw~~~~~~---~~~~~~---------~~~~~v~~~~~~~~ 48 (203)
|+|.|+|. .|+++.+.|.|++++..... .+..+. .....+..|+|+|+
T Consensus 19 ~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 19 ALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred EEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 57889996 45555678999999754221 112221 11356889999986
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=86.85 E-value=3.2 Score=33.66 Aligned_cols=59 Identities=14% Similarity=0.034 Sum_probs=42.5
Q ss_pred eeEE-EeeCCCEEEEEcCC------------CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 84 VDAL-LKLDEDRVITGSEN------------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
.-.| |+|.|.+++.-..+ ..+.+.+..+++....+..+.+..++.++|+||++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 3456 88999877664432 24566677778877777777666899999999998887653
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=85.04 E-value=2.9 Score=33.89 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=38.1
Q ss_pred CcccccCCEEEEEcCC------------CeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEe
Q 028806 1 MTFAADAMKLLGTSGD------------GTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCG 55 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d------------~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 55 (203)
|+|+|.|++++.-..+ +.+.+.+..+++..+.+..+ ...++.++|+||++.|++.
T Consensus 481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 5688999876665332 24555566667766655543 4689999999999887765
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=84.18 E-value=8.1 Score=33.31 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=28.6
Q ss_pred eeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeee
Q 028806 84 VDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 118 (203)
+.++ ..++..++++.+.|+++++|++.+++++.+.
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3444 5667889999999999999999999887664
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.79 E-value=10 Score=27.36 Aligned_cols=117 Identities=14% Similarity=0.191 Sum_probs=72.1
Q ss_pred ccceEEEEEee--CCCEEEEecCCCeEEEEEcCCcc-----ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEE
Q 028806 37 EEELTSVVLMK--NGRKVVCGSQSGTVLLYSWGYFK-----DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVG 108 (203)
Q Consensus 37 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d 108 (203)
...|..+.. + +...++..+.+|.++...+.... .....+.. ...+..+ .......++..+..|.+..+.
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke--gD~l~~~~~~~~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE--GDEVVSIASSVDETHILLFTKKGRVARFS 143 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT--TCCEEEEEECCSSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC--CCEEEEEEEeCCCCEEEEEECCCEEEEEE
Confidence 455666644 4 46789999999999998875321 11111222 2334444 344556788888899887776
Q ss_pred ccC---------CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 109 ILP---------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 109 ~~~---------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
... |.....+.. +..|..+...+++.+|+..+..|.++...+......
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~--~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~ 200 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEK--NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKT 200 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCT--TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCC
T ss_pred hhhCCCcCCCCCCEEEEccCC--CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccC
Confidence 532 112222322 225766666666778899999999999887655443
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=83.08 E-value=7.8 Score=31.35 Aligned_cols=59 Identities=15% Similarity=0.043 Sum_probs=39.5
Q ss_pred eeEE-EeeCCCEEEEEcC------------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 84 VDAL-LKLDEDRVITGSE------------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 84 v~~~-~~~~~~~l~~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
...| |.++|.+.+.... ...|..++..+++....+.......++.++|+||++.|+++-
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3456 7888887773322 125666777677766655544334689999999999887665
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=82.64 E-value=16 Score=28.65 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=22.2
Q ss_pred cceEEEEEeeCCC-EEEEecCCCeEEEEEcC
Q 028806 38 EELTSVVLMKNGR-KVVCGSQSGTVLLYSWG 67 (203)
Q Consensus 38 ~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~ 67 (203)
...+.|+|.|++. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3467899999985 44455678999999753
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=82.58 E-value=4.3 Score=32.82 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=38.2
Q ss_pred CcccccCCEEEEEcC------------CCeEEEEEcCCCeEEEeecCC-ccceEEEEEeeCCCEEEEecC
Q 028806 1 MTFAADAMKLLGTSG------------DGTLSVCNLRKNTVQTRSEFS-EEELTSVVLMKNGRKVVCGSQ 57 (203)
Q Consensus 1 l~~sp~~~~l~~~~~------------d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 57 (203)
|+|.++|.+.+.... .+.|..++..++++...+... ...++.++|+||++.|+++-+
T Consensus 481 L~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred eEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 467788887664321 125666666677766555543 357899999999998877643
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=80.05 E-value=2.7 Score=36.23 Aligned_cols=34 Identities=26% Similarity=0.151 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.+.+++..++..++++.+.|+++|+|++.+++.-
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 4677888889899999999999999999988653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 203 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.3 bits (160), Expect = 1e-13
Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 2/138 (1%)
Query: 15 GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSD 74
D + + ++R+ + E ++ ++ NG GS T L+ ++
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSH 133
+ ++ ++ G ++ ++ L +A H + L ++
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTD 322
Query: 134 DRKFLGSISHDSMLKLWD 151
D + + S DS LK+W+
Sbjct: 323 DGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.2 bits (87), Expect = 4e-04
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHDRKFLGSISHDSMLKL 149
+ + TGS++ L + ++ + + + I S++ S + L + D +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 150 WDLDD-----ILKGSGNNISQAA 167
WD +L G N +S
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLG 319
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.0 bits (84), Expect = 0.001
Identities = 10/65 (15%), Positives = 25/65 (38%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
++F+ LL D +V + K + ++ + + +G V GS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 61 VLLYS 65
+ +++
Sbjct: 336 LKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.8 bits (125), Expect = 4e-09
Identities = 22/171 (12%), Positives = 53/171 (30%), Gaps = 22/171 (12%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLM-------------- 46
+ D + S D T+ V + + + +
Sbjct: 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 208
Query: 47 ------KNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSE 100
K G ++ GS+ T+ ++ C VG L +++ ++
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 101 NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151
+ + + R ++ + H + SL ++ + S D +K+W+
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 4e-07
Identities = 23/191 (12%), Positives = 60/191 (31%), Gaps = 25/191 (13%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
++ + ++ S D T+ + ++ E + V ++G + S T
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166
Query: 61 VLLYSWG-------------------YFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN 101
V ++ + + S + + S +++GS +
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226
Query: 102 GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD-----IL 156
I + + + + H + + KF+ S + D L++WD + L
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285
Query: 157 KGSGNNISQAA 167
+ ++
Sbjct: 286 NAHEHFVTSLD 296
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.4 bits (116), Expect = 6e-08
Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 23/178 (12%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEEL-------TSVVLMKNGRKVV 53
D + S D + V + + R + E SVV ++G+ VV
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 54 CGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV-----------DALLKLDEDRVITGSENG 102
GS +V L++ + SD S +++ +++GS++
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 103 LISLVGILPNRIIQPIAEHSE-----YPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155
+ + + H +L + + S D ++W I
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 8e-05
Identities = 21/152 (13%), Positives = 51/152 (33%), Gaps = 22/152 (14%)
Query: 48 NGRKVVCGSQSGTVLLYS------WGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSEN 101
+G+ + GS V ++ ++ G + + D V++GS +
Sbjct: 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 275
Query: 102 GLISLVGILPNRIIQPIAE-----------HSEYPIESLALSHDRKFLGSISHDSMLKLW 150
+ L + + + S+A + + +++ S S D + W
Sbjct: 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
Query: 151 DLDD-----ILKGSGNNISQAAESDSDGDDMD 177
D +L+G N++ A ++ +
Sbjct: 336 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 1e-07
Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 10/161 (6%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ D + ++ S D ++ V ++ + + + L +V G+ T
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST 238
Query: 61 VLLYSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI-- 118
V ++ + S L+ +++ VIT S++G + L + I+ +
Sbjct: 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 298
Query: 119 --AEHSEYPIESLALSHDRKFLGSISHD----SMLKLWDLD 153
+ S + + S+ + S + + L + D D
Sbjct: 299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 3e-05
Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 5/147 (3%)
Query: 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG 67
+++ + D + V + T L +G VV GS ++ ++
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCL--HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 205
Query: 68 YFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE 127
S S ++L ++ +++G+ + + + I + +Q + +++
Sbjct: 206 TGNCIHTLTGHQSLTSG---MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 262
Query: 128 SLALSHDRKFLGSISHDSMLKLWDLDD 154
L ++ F+ + S D +KLWDL
Sbjct: 263 VTCLQFNKNFVITSSDDGTVKLWDLKT 289
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.0 bits (107), Expect = 7e-07
Identities = 9/63 (14%), Positives = 27/63 (42%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
D ++ + S + I + + ++ + I + + L + ++ L SIS + +
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Query: 151 DLD 153
+ +
Sbjct: 309 NPE 311
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 3e-06
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 91 DEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLW 150
++ ++ L++ I E S + S +S D K++ + S D ++
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESS--SVLSCDISVDDKYIVTGSGDKKATVY 333
Query: 151 DL 152
++
Sbjct: 334 EV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.001
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGT 60
+ FA + T D L+ +S+ S + S + + + +V GS
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-VLSCDISVDDKYIVTGSGDKK 329
Query: 61 VLLYS 65
+Y
Sbjct: 330 ATVYE 334
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.3 bits (87), Expect = 3e-04
Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 91 DEDRVITGSENGLISLVGILPNRI--IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLK 148
D ++ N + + N+ + + EH+ + + + D + + D
Sbjct: 18 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAY 76
Query: 149 LWD 151
+W
Sbjct: 77 VWT 79
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (84), Expect = 8e-04
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 113 RIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
+I+Q +Y I + + + L S D L ++ D
Sbjct: 2 QIVQIEQAPKDY-ISDIKIIPSKSLLLITSWDGSLTVYKFDI 42
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.001
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 17/147 (11%)
Query: 14 SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCS 73
SGD T+ V N T + + + L R VV GS T+ L+ + +
Sbjct: 155 SGDRTIKVWNTS--TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI---ECGA 209
Query: 74 DRFVGLSPNSVDALLKLDEDRVITGSENGLISL---------VGILPNRIIQPIAEHSEY 124
V + ++ D R+++G+ +G I + ++ + EHS
Sbjct: 210 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG- 268
Query: 125 PIESLALSHDRKFLGSISHDSMLKLWD 151
L D + S SHD + +WD
Sbjct: 269 --RVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.7 bits (80), Expect = 0.002
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 121 HSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154
H++ I +L+ S D K L S + + WD+
Sbjct: 11 HNK-AITALSSSADGKTLFSADAEGHINSWDIST 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.3 bits (79), Expect = 0.003
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 64 YSWGYFKDCSDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGIL-PNRIIQPIAEHS 122
W + + +++ED V TGS + I + + P +II+ + H
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 123 EYPIESLALSHDRKFLGSISHDSMLKLWD 151
+ + +L + S D+ +K W+
Sbjct: 259 D-GVNNLLWETPSTLV-SSGADACIKRWN 285
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 203 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.95 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.94 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.94 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.94 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.93 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.91 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.91 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.91 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.91 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.88 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.87 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.86 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.85 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.83 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.79 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.79 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.77 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.76 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.76 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.74 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.71 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.71 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.69 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.68 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.65 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.58 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.52 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.48 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.45 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.38 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.37 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.37 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.34 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.29 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.07 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.06 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.99 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.98 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.98 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.83 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.76 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.76 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.74 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.68 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.67 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.64 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.59 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.51 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.5 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.48 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.4 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.32 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.18 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.16 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.1 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.78 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.78 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.64 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.45 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.34 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.27 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.25 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.25 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.83 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.67 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.64 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.61 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.56 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.47 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.42 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.28 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.1 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.69 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.68 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.63 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.33 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.2 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.99 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.92 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.62 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.77 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 92.66 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 92.64 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.53 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 85.57 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 83.61 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.36 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 82.34 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 81.15 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=5.4e-28 Score=179.41 Aligned_cols=147 Identities=16% Similarity=0.252 Sum_probs=132.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee--ecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF--VGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~ 79 (203)
.+.+.+.++++++.|+.|++||+++++.+..+.+|...|++++|+|++.+|++++.|+.|++|++... .....+ ..
T Consensus 191 ~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~- 268 (340)
T d1tbga_ 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDN- 268 (340)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT-
T ss_pred ccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc-cccccccccc-
Confidence 35677889999999999999999999999999999999999999999999999999999999999753 333333 23
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
+...+.++ |+|++++|++|+.||.|++||+.+++.+..+.+|.. +|.+++|+|++++|++|+.||.|+|||
T Consensus 269 ~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~-~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 55678888 999999999999999999999999999999999965 899999999999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=2.1e-27 Score=179.91 Aligned_cols=155 Identities=10% Similarity=0.048 Sum_probs=131.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-ccceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK-DCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~ 77 (203)
++|||+|++||+|+.++.|+||++.+++ .+..+.+|..+|.+++|+|++++|++++.|+.|++||+.... .....+.
T Consensus 13 ~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~ 92 (371)
T d1k8kc_ 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 92 (371)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccc
Confidence 4799999999999999999999998775 567788999999999999999999999999999999997422 2233445
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCce----eeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRI----IQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
. +...+.++ |+|++++|++++.++.|++|++..... ......|.. .|.+++|+|++++|++++.|+.|++|++
T Consensus 93 ~-~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~p~~~~l~s~s~D~~v~v~~~ 170 (371)
T d1k8kc_ 93 R-INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFSA 170 (371)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred c-ccccccccccccccccceeecccCcceeeeeeccccccccccccccccc-ccccccccccccceeccccCcEEEEEee
Confidence 6 77889999 999999999999999999999876543 233445644 7999999999999999999999999998
Q ss_pred CCccc
Q 028806 153 DDILK 157 (203)
Q Consensus 153 ~~~~~ 157 (203)
.....
T Consensus 171 ~~~~~ 175 (371)
T d1k8kc_ 171 YIKEV 175 (371)
T ss_dssp CCTTT
T ss_pred ccCcc
Confidence 76543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=2.4e-27 Score=175.88 Aligned_cols=155 Identities=12% Similarity=0.207 Sum_probs=136.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEeecCCccceEEEEEeeCCCEEEEecC--CCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRSEFSEEELTSVVLMKNGRKVVCGSQ--SGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~ 76 (203)
++|+|+|++||+|+.||+|+||++.++. ....+..|..+|.+++|+|++++|++++. +..+++|++.. +.....+
T Consensus 64 ~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~-~~~~~~l 142 (311)
T d1nr0a1 64 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGNL 142 (311)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCBCC
T ss_pred EEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccc-ccccccc
Confidence 4799999999999999999999998764 34567788999999999999999998875 45699999975 5667778
Q ss_pred eccCCCceeEE-EeeCCCE-EEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 77 VGLSPNSVDAL-LKLDEDR-VITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 77 ~~~~~~~v~~~-~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
.. |...|.++ |+|++++ +++|+.|+.|++||+++++....+..|.. +|.++.|+|++++|++++.|+.|++||+.+
T Consensus 143 ~~-h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~-~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~ 220 (311)
T d1nr0a1 143 TG-QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220 (311)
T ss_dssp CC-CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cc-cccccccccccccceeeecccccccccccccccccccccccccccc-cccccccCcccccccccccccccccccccc
Confidence 88 99999999 9999885 77899999999999999999999999865 899999999999999999999999999987
Q ss_pred cccC
Q 028806 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
....
T Consensus 221 ~~~~ 224 (311)
T d1nr0a1 221 GTKT 224 (311)
T ss_dssp CCEE
T ss_pred cccc
Confidence 6544
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=3e-27 Score=175.40 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=136.7
Q ss_pred CcccccCCEEEEEcC--CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCE-EEEecCCCeEEEEEcCCccccceeee
Q 028806 1 MTFAADAMKLLGTSG--DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~ 77 (203)
|+|+|++++|++++. +..++||++.+++....+.+|...|.+++|+|++.+ |++++.|+.|++||++. ......+.
T Consensus 108 v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-~~~~~~~~ 186 (311)
T d1nr0a1 108 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFG 186 (311)
T ss_dssp EEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc-cccccccc
Confidence 479999999988875 456999999998888889999999999999999875 78899999999999985 56677777
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeec-------cCCCCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIA-------EHSEYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
. |...+.++ ++|+++++++++.|+.|++||+.++..+..+. +|.. .|.+++|+|++++|++++.|+.|+|
T Consensus 187 ~-~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~i 264 (311)
T d1nr0a1 187 E-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKI 264 (311)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEE
T ss_pred c-ccccccccccCccccccccccccccccccccccccccccccccccccccccc-cccccccCCCCCEEEEEeCCCeEEE
Confidence 7 89999999 99999999999999999999999887766653 3533 7999999999999999999999999
Q ss_pred EeCCCcccCC
Q 028806 150 WDLDDILKGS 159 (203)
Q Consensus 150 wd~~~~~~~~ 159 (203)
||++++....
T Consensus 265 wd~~t~~~~~ 274 (311)
T d1nr0a1 265 WNVATLKVEK 274 (311)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCcEEE
Confidence 9999886543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=9.6e-27 Score=170.33 Aligned_cols=148 Identities=14% Similarity=0.237 Sum_probs=136.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC--------------------CEEEEecCCCe
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG--------------------RKVVCGSQSGT 60 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~l~~~~~d~~ 60 (203)
++|+|++++|++++.|+.|++|++.++.....+..|...+.++.|+|++ ..+++++.|+.
T Consensus 149 ~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 228 (317)
T d1vyhc1 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228 (317)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred eecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE
Confidence 3689999999999999999999999999999999999999999998763 47889999999
Q ss_pred EEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 61 VLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 61 i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
|++|++.+ +.++..+.+ |...+.++ ++|++++|++++.||.|++||+.+++++..+.+|.. +|++++|+|++++|+
T Consensus 229 i~~~~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~ 305 (317)
T d1vyhc1 229 IKMWDVST-GMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVV 305 (317)
T ss_dssp EEEEETTT-TEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSCEE
T ss_pred EEEEECCC-CcEEEEEeC-CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEE
Confidence 99999975 577888888 99999999 899999999999999999999999999999999965 899999999999999
Q ss_pred EEeCCCcEEEEe
Q 028806 140 SISHDSMLKLWD 151 (203)
Q Consensus 140 ~~~~d~~i~iwd 151 (203)
+++.|+.|+|||
T Consensus 306 s~s~Dg~i~iWd 317 (317)
T d1vyhc1 306 TGSVDQTVKVWE 317 (317)
T ss_dssp EEETTSEEEEEC
T ss_pred EEeCCCeEEEeC
Confidence 999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2.4e-26 Score=170.40 Aligned_cols=159 Identities=17% Similarity=0.274 Sum_probs=133.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc-----------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF----------- 69 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----------- 69 (203)
|+|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++.++++++.|+.+.+|+....
T Consensus 61 l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 140 (340)
T d1tbga_ 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEEC
T ss_pred EEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecc
Confidence 579999999999999999999999999999999999999999999999998888888888877765321
Q ss_pred ---------------------------------------------------------------------------cccce
Q 028806 70 ---------------------------------------------------------------------------KDCSD 74 (203)
Q Consensus 70 ---------------------------------------------------------------------------~~~~~ 74 (203)
+.++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~ 220 (340)
T d1tbga_ 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220 (340)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEE
Confidence 11222
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
.+.. |...|.++ |+|++.+|++++.|+.|++|+++....+..+.... ...|.+++|+|++++|++++.||.|++||+
T Consensus 221 ~~~~-h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~ 299 (340)
T d1tbga_ 221 TFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp EECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEET
T ss_pred EEeC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEEC
Confidence 3344 67788999 99999999999999999999999887776553221 237999999999999999999999999999
Q ss_pred CCcccCCC
Q 028806 153 DDILKGSG 160 (203)
Q Consensus 153 ~~~~~~~~ 160 (203)
.++.....
T Consensus 300 ~~~~~~~~ 307 (340)
T d1tbga_ 300 LKADRAGV 307 (340)
T ss_dssp TTCCEEEE
T ss_pred CCCcEEEE
Confidence 88765443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.8e-26 Score=171.45 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=130.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|++..+++++.|+.|++|++++++.+..+. +...|.+++|+|++.+|++++.++.+++||+... .. ..... |
T Consensus 189 l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~-~~-~~~~~-~ 264 (337)
T d1gxra_ 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DK-YQLHL-H 264 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-CE-EEECC-C
T ss_pred ccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccc-cc-ccccc-c
Confidence 4689999999999999999999999998877664 6788999999999999999999999999999743 33 34556 8
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
...+.++ |+|++++|++++.|+.|++||+.+++.+..+..+ . .|.+++|+|++++|++++.|+.|+|||+
T Consensus 265 ~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~-~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-S-SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-S-CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC-C-CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 8899999 9999999999999999999999999988776543 4 7999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.1e-25 Score=168.29 Aligned_cols=155 Identities=15% Similarity=0.247 Sum_probs=133.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe-----EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCc-cccce
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT-----VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYF-KDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~ 74 (203)
|+|+|+|++|++|+ ||.|+|||+.++. .......|...|.+++|+|++++|++++.|+.|++||+... .....
T Consensus 57 v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 135 (337)
T d1gxra_ 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred EEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccc
Confidence 57999999999987 7999999997542 23344578889999999999999999999999999998642 23445
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
.+.. +...+..+ |+|++.++++++.++.|++|++.+++.......|.. .|.+++|++++.++++++.|+.|++||++
T Consensus 136 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-~v~~l~~s~~~~~~~~~~~d~~v~i~d~~ 213 (337)
T d1gxra_ 136 ELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 6677 88888888 899999999999999999999999999888888855 89999999999999999999999999998
Q ss_pred CcccC
Q 028806 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
++...
T Consensus 214 ~~~~~ 218 (337)
T d1gxra_ 214 EGRQL 218 (337)
T ss_dssp TTEEE
T ss_pred cceee
Confidence 87654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=1.1e-25 Score=165.10 Aligned_cols=155 Identities=11% Similarity=0.153 Sum_probs=118.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcC------------
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWG------------ 67 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~------------ 67 (203)
|+|+|++++|++|+.||+|++||+.+++.+..+. .|...|.+++|+|++.++ +++.|+.+++|+..
T Consensus 18 l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~ 96 (299)
T d1nr0a2 18 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVAN 96 (299)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCccccccccccc
Confidence 5799999999999999999999999988777664 567778777777776533 33345555555542
Q ss_pred ----------------------------------------------------------------------Cccccceeee
Q 028806 68 ----------------------------------------------------------------------YFKDCSDRFV 77 (203)
Q Consensus 68 ----------------------------------------------------------------------~~~~~~~~~~ 77 (203)
..........
T Consensus 97 ~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 176 (299)
T d1nr0a2 97 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI 176 (299)
T ss_dssp ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1100001112
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceee---eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQ---PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. |...|.++ |+|++.+|++++.++.|++||+.++.... .+..|.. +|.+++|+|++.+|++++.|+.|++||++
T Consensus 177 ~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~ 254 (299)
T d1nr0a2 177 V-HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMN 254 (299)
T ss_dssp E-CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccceEEEcCCCEEEEEECC
Confidence 3 56778888 89999999999999999999998876553 3455644 89999999999999999999999999998
Q ss_pred CcccC
Q 028806 154 DILKG 158 (203)
Q Consensus 154 ~~~~~ 158 (203)
+....
T Consensus 255 ~~~~~ 259 (299)
T d1nr0a2 255 KPSDH 259 (299)
T ss_dssp CTTSC
T ss_pred CCCcc
Confidence 76543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=8.6e-26 Score=171.00 Aligned_cols=156 Identities=16% Similarity=0.113 Sum_probs=129.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeE--EEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc---cee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTV--QTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC---SDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~---~~~ 75 (203)
|+|+|++++|++++.|++|+||++.++.. ...+..|...|.+++|+|+++.|++++.++.+++|++...... ...
T Consensus 57 l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~ 136 (371)
T d1k8kc_ 57 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136 (371)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccc
Confidence 57999999999999999999999987654 3455678889999999999999999999999999998643221 222
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCC------------------ceeeeeccCCCCceEEEEEeCCCC
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPN------------------RIIQPIAEHSEYPIESLALSHDRK 136 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~ 136 (203)
... +...|.++ |+|++++|++++.|+.|++|++... ..+.....|.. .|.+++|+|+++
T Consensus 137 ~~~-~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~ 214 (371)
T d1k8kc_ 137 KKP-IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGS 214 (371)
T ss_dssp CTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSS
T ss_pred ccc-cccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccC-cEEEEEeecccc
Confidence 344 67789999 9999999999999999999997542 23445556644 799999999999
Q ss_pred eEEEEeCCCcEEEEeCCCcccC
Q 028806 137 FLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 137 ~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+|++++.|+.|++||+.++.+.
T Consensus 215 ~l~s~~~d~~i~iwd~~~~~~~ 236 (371)
T d1k8kc_ 215 RVAWVSHDSTVCLADADKKMAV 236 (371)
T ss_dssp EEEEEETTTEEEEEEGGGTTEE
T ss_pred cccccccCCcceEEeeecccce
Confidence 9999999999999999776543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3e-25 Score=167.92 Aligned_cols=149 Identities=17% Similarity=0.288 Sum_probs=126.2
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEee-------cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc-----
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRS-------EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK----- 70 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~----- 70 (203)
+.+++++|++++.|+.|++|+..++.....+ .+|...|.+++|+|++++|++++.|+.|++||+....
T Consensus 213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 292 (388)
T d1erja_ 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292 (388)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred cCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccc
Confidence 3457899999999999999999987765544 3577889999999999999999999999999986432
Q ss_pred ------ccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEE------eCCCCe
Q 028806 71 ------DCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLAL------SHDRKF 137 (203)
Q Consensus 71 ------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~------~~~~~~ 137 (203)
........ |...+.++ |+|++++|++|+.||.|++||+++++++.++.+|.. .|.++++ +|++.+
T Consensus 293 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~-~V~~~~~~~~~~~spd~~~ 370 (388)
T d1erja_ 293 KTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEYNV 370 (388)
T ss_dssp ------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTTCEE
T ss_pred ccccccceeeeccc-ccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC-CEEEEEEecCcccCCCCCE
Confidence 12223345 77889999 999999999999999999999999999999999966 8998874 678999
Q ss_pred EEEEeCCCcEEEEeCC
Q 028806 138 LGSISHDSMLKLWDLD 153 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~ 153 (203)
|++++.||.|+||+++
T Consensus 371 l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 371 FATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCEEEEEeee
Confidence 9999999999999985
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=5.6e-25 Score=160.83 Aligned_cols=155 Identities=14% Similarity=0.270 Sum_probs=141.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++.+++++..++.+.+|+... ......+.. +
T Consensus 23 l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 100 (317)
T d1vyhc1 23 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHG-H 100 (317)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-SCEEECCCC-C
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc-ccccccccc-c
Confidence 57999999999999999999999999999999999999999999999999999999999999999864 455555666 7
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
...+.++ ++|++..+++++.|+.+++|++++++.+..+..|.. .+.+++|+|++.+|++++.|+.|++|++.+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~ 178 (317)
T d1vyhc1 101 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC-cceeeecccCCCEEEEEeCCCeEEEEeeccceee
Confidence 8888888 899999999999999999999999999999998865 7999999999999999999999999999887644
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=7.6e-25 Score=160.51 Aligned_cols=151 Identities=20% Similarity=0.236 Sum_probs=123.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEE-eecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--cceeee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQT-RSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFV 77 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~ 77 (203)
++|+|++++|++++.|+.|++|++.++.... ....|...|.+++|+|++.+|++++.++.|++||+..... ....+.
T Consensus 142 ~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 221 (299)
T d1nr0a2 142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT 221 (299)
T ss_dssp EEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4689999999999999999999998876543 3346788999999999999999999999999999975322 234456
Q ss_pred ccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee--eeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRII--QPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLD 153 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~ 153 (203)
. |...|.++ |+|++.+|++++.|+.|++||++++... .....|....+.++.| +++.+|++++.|+.|++||+.
T Consensus 222 ~-h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 222 F-HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred c-cccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 6 78899999 9999999999999999999999876533 3334444446666655 556899999999999999984
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.5e-24 Score=165.26 Aligned_cols=150 Identities=18% Similarity=0.228 Sum_probs=119.9
Q ss_pred CCEEEEEcCCCeEEEEEcCCC---------------e---EEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028806 7 AMKLLGTSGDGTLSVCNLRKN---------------T---VQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~~~~---------------~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 68 (203)
+.++++++.||++++|++... . .......+...+.+++|+|++ +|++|+.|+.|++||+.+
T Consensus 136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~ 214 (393)
T d1sq9a_ 136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST 214 (393)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence 467899999999999997421 0 111222345668899999987 889999999999999975
Q ss_pred ccccce------eeeccCCCceeEE-EeeCCCEEEEEcCCC---cEEEEEccCCceeeeec-------------cCCCCc
Q 028806 69 FKDCSD------RFVGLSPNSVDAL-LKLDEDRVITGSENG---LISLVGILPNRIIQPIA-------------EHSEYP 125 (203)
Q Consensus 69 ~~~~~~------~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~-------------~~~~~~ 125 (203)
. .++. .+.+ |..+|.++ |+|+|++|++|+.|+ .|++||+++++.+..+. +|.. .
T Consensus 215 ~-~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-~ 291 (393)
T d1sq9a_ 215 L-RPLYNFESQHSMIN-NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-W 291 (393)
T ss_dssp T-EEEEEEECCC---C-CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-C
T ss_pred c-cccccccccccccc-ccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccC-c
Confidence 3 3332 3456 78899999 999999999999886 48999999988877764 6755 7
Q ss_pred eEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 126 IESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 126 i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
|++++|+|++++|++++.|++|++||+.+++....
T Consensus 292 V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~ 326 (393)
T d1sq9a_ 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 326 (393)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEE
Confidence 99999999999999999999999999999876543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=4.4e-24 Score=162.65 Aligned_cols=137 Identities=14% Similarity=0.183 Sum_probs=112.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEee------cCCccceEEEEEeeCCCEEEEecCCC---eEEEEEcCCccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS------EFSEEELTSVVLMKNGRKVVCGSQSG---TVLLYSWGYFKD 71 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~~~ 71 (203)
++|+|++ +|++|+.|++|+|||+.+++.+..+ .+|..+|.+++|+|++++|++++.|+ .|++||+.. +.
T Consensus 190 v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~ 267 (393)
T d1sq9a_ 190 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GE 267 (393)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CC
T ss_pred EEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccc-ce
Confidence 4688887 8899999999999999998776544 46888999999999999999999886 489999974 34
Q ss_pred cceee-------------eccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceE----EEEEeC
Q 028806 72 CSDRF-------------VGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIE----SLALSH 133 (203)
Q Consensus 72 ~~~~~-------------~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~----~i~~~~ 133 (203)
.+..+ .+ |...|+++ |+|++++|++++.|+.|++||+.+++++.++.+|.+ .|. .++|+|
T Consensus 268 ~~~~l~~~~~~~~~~~~~~g-H~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~-~v~~~~~~~~~~~ 345 (393)
T d1sq9a_ 268 RIGSLSVPTHSSQASLGEFA-HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD-DIEIEEDILAVDE 345 (393)
T ss_dssp EEEEECBC--------CCBS-BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG-GCSSGGGCCCBCT
T ss_pred eeeeeccccccccceeeeec-ccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC-cccCCccEEEECC
Confidence 43333 46 88899999 999999999999999999999999999999998854 443 356777
Q ss_pred CCCeEEEE
Q 028806 134 DRKFLGSI 141 (203)
Q Consensus 134 ~~~~l~~~ 141 (203)
++..++++
T Consensus 346 ~~~~~~~~ 353 (393)
T d1sq9a_ 346 HGDSLAEP 353 (393)
T ss_dssp TSCBCSSC
T ss_pred CCCEEEEc
Confidence 76665533
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.2e-23 Score=156.44 Aligned_cols=155 Identities=14% Similarity=0.185 Sum_probs=129.1
Q ss_pred CcccccCCEEEEEc--CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCE-EEEecCCCeEEEEEcCCccccce---
Q 028806 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRK-VVCGSQSGTVLLYSWGYFKDCSD--- 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~--- 74 (203)
|+|+|++++|++++ .++.+++|+..+++.+..+.+|...|.+++|+|++.. +++++.|+.+++|++... ....
T Consensus 121 v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~-~~~~~~~ 199 (325)
T d1pgua1 121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDR 199 (325)
T ss_dssp EEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EEEEEEC
T ss_pred EEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccc-ccceecc
Confidence 46899999987765 4678999999999999999999999999999998864 778999999999998643 2222
Q ss_pred eeeccCCCceeEE-EeeC-CCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEe---CCCCeEEEEeCCCcEEE
Q 028806 75 RFVGLSPNSVDAL-LKLD-EDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS---HDRKFLGSISHDSMLKL 149 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~---~~~~~l~~~~~d~~i~i 149 (203)
.... +...+.++ |+|+ +.++++++.|+.|++||+++++.+..+..|.. ++..+.|+ |++++|++++.|+.|+|
T Consensus 200 ~~~~-~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~i 277 (325)
T d1pgua1 200 THHK-QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRV 277 (325)
T ss_dssp SSSC-TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEE
T ss_pred cccC-CCCccEEeeeccccceeccccccccceeeeeecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEE
Confidence 2334 66779999 9996 68899999999999999999999999988854 56555554 68899999999999999
Q ss_pred EeCCCcccC
Q 028806 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
||+++++..
T Consensus 278 wd~~~~~~~ 286 (325)
T d1pgua1 278 WDVTTSKCV 286 (325)
T ss_dssp EETTTTEEE
T ss_pred EECCCCCEE
Confidence 999887654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=2.5e-23 Score=151.59 Aligned_cols=148 Identities=19% Similarity=0.241 Sum_probs=121.4
Q ss_pred cccccCCEEEEEcCC-CeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLLGTSGD-GTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d-~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+++|++..+++++.+ +.+++|++........+. .+...+.+++|+|++.+|++++.++.|++||+.........+..
T Consensus 125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~- 203 (287)
T d1pgua2 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF- 203 (287)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-
T ss_pred eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc-
Confidence 467788888777766 479999998765555444 46788999999999999999999999999999754333444566
Q ss_pred CCCceeEE-EeeC----------CCEEEEEcCCCcEEEEEccC-CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 80 SPNSVDAL-LKLD----------EDRVITGSENGLISLVGILP-NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 80 ~~~~v~~~-~~~~----------~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
|...+.++ |+|. +.++++|+.|+.|++||++. ++.+..+.+|.. .|.+++|+|++ .|++++.|+.|
T Consensus 204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~-~V~~v~~~~~~-~l~s~g~D~~v 281 (287)
T d1pgua2 204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPS-TLVSSGADACI 281 (287)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETT-EEEEEETTSCE
T ss_pred cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC-CeEEEEECCCC-EEEEEECCCeE
Confidence 88889998 8764 56899999999999999876 556777788865 89999999986 68899999999
Q ss_pred EEEeC
Q 028806 148 KLWDL 152 (203)
Q Consensus 148 ~iwd~ 152 (203)
++|++
T Consensus 282 ~iW~i 286 (287)
T d1pgua2 282 KRWNV 286 (287)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4.3e-23 Score=155.88 Aligned_cols=155 Identities=18% Similarity=0.265 Sum_probs=127.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+|+|++++|++|+.||.|++|+...++.+..+.+|...|.++.|++++..+++++.++.+++||+.. ......... +
T Consensus 127 l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~-~ 204 (388)
T d1erja_ 127 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLSI-E 204 (388)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEEC-S
T ss_pred EEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc-ccccccccc-c
Confidence 47999999999999999999999999999999999999999999999999999999999999999974 344444444 4
Q ss_pred CCceeEEE-eeCCCEEEEEcCCCcEEEEEccCCceeeeec-------cCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 81 PNSVDALL-KLDEDRVITGSENGLISLVGILPNRIIQPIA-------EHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 81 ~~~v~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
...+...+ .+++.+|++++.|+.|++|++.++.....+. .|.. .|.+++|+|++++|++++.|+.|++||+
T Consensus 205 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~d~~i~iwd~ 283 (388)
T d1erja_ 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNL 283 (388)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCC-CEEEEEECCCCCEEEEEECCCcEEEEec
Confidence 44444445 5588999999999999999999887765543 4533 7999999999999999999999999999
Q ss_pred CCcccC
Q 028806 153 DDILKG 158 (203)
Q Consensus 153 ~~~~~~ 158 (203)
++....
T Consensus 284 ~~~~~~ 289 (388)
T d1erja_ 284 QNANNK 289 (388)
T ss_dssp ------
T ss_pred cCCccc
Confidence 876644
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=7.8e-23 Score=150.92 Aligned_cols=146 Identities=17% Similarity=0.255 Sum_probs=120.5
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC-
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP- 81 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~- 81 (203)
+++++.+|++++.||.|++|+++.++.+..+..|...+.++.++ +++|++++.|+.|++||+.. ......+.. +.
T Consensus 183 ~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~-~~~ 258 (342)
T d2ovrb2 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKT-GQCLQTLQG-PNK 258 (342)
T ss_dssp EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCEEEEECS-TTS
T ss_pred ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccc-ccccccccc-cce
Confidence 56788999999999999999999999999999999999887765 56999999999999999975 344444544 33
Q ss_pred --CceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeec-----cCCCCceEEEEEeCCCCeEEEEeCCCc----EEEE
Q 028806 82 --NSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA-----EHSEYPIESLALSHDRKFLGSISHDSM----LKLW 150 (203)
Q Consensus 82 --~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~d~~----i~iw 150 (203)
..+.+ +.++++++++++.||.|++||+++++.+..+. +|. ..|++++|+|++.+|++|+.||+ |++|
T Consensus 259 ~~~~~~~-~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~-~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~ 336 (342)
T d2ovrb2 259 HQSAVTC-LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG-GVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336 (342)
T ss_dssp CSSCEEE-EEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGT-CEEEEEEECSSEEEEEEECSSSSSCCEEEEE
T ss_pred eeeceee-cccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCC-CCEEEEEECCCCCEEEEEeCCCCCeeEEEEE
Confidence 33333 46677899999999999999999999887764 343 37999999999999999998885 9999
Q ss_pred eCCC
Q 028806 151 DLDD 154 (203)
Q Consensus 151 d~~~ 154 (203)
|+..
T Consensus 337 Df~~ 340 (342)
T d2ovrb2 337 DFDV 340 (342)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9853
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.6e-22 Score=150.01 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=122.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc----------
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD---------- 71 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---------- 71 (203)
++++++++|++|+.||+|+|||+.+++++.++.+|..+|.+++|+|+ .+|++++.|+.|++|++.....
T Consensus 18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~ 96 (355)
T d1nexb2 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNST 96 (355)
T ss_dssp EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccc
Confidence 36778999999999999999999999999999999999999999985 5788888888888887643100
Q ss_pred ----------------------cce-------------------------------------------------------
Q 028806 72 ----------------------CSD------------------------------------------------------- 74 (203)
Q Consensus 72 ----------------------~~~------------------------------------------------------- 74 (203)
.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (355)
T d1nexb2 97 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176 (355)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEE
T ss_pred ccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeee
Confidence 000
Q ss_pred -------------------eeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCC
Q 028806 75 -------------------RFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHD 134 (203)
Q Consensus 75 -------------------~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~ 134 (203)
.+.. +...+.++ ++|++.++++++.|+.|++|+++++..+..+.+|.. .|.++.++
T Consensus 177 ~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~~-- 252 (355)
T d1nexb2 177 GSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA-LVGLLRLS-- 252 (355)
T ss_dssp EETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CCCEEEEC--
T ss_pred ecccceeeeeecccccceeeeec-cccccccccccccceeeecccccceEEeeeccccccccccccccc-cccccccc--
Confidence 0001 12233445 678889999999999999999999999999999965 89998886
Q ss_pred CCeEEEEeCCCcEEEEeCCCcccC
Q 028806 135 RKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 135 ~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+++|++++.||.|++||+.+..+.
T Consensus 253 ~~~l~~~~~dg~i~iwd~~~~~~~ 276 (355)
T d1nexb2 253 DKFLVSAAADGSIRGWDANDYSRK 276 (355)
T ss_dssp SSEEEEECTTSEEEEEETTTCCEE
T ss_pred cceeeeeeccccccccccccccee
Confidence 468999999999999999877543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.7e-22 Score=149.14 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=53.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSW 66 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 66 (203)
+++++|++||+|+.||+|+|||+.+++++.++.+|...|.+++|+|+ +|++++.|+.+++|+.
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~ 84 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA 84 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence 36789999999999999999999999999999999999999998764 6666666666666654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=5e-23 Score=153.11 Aligned_cols=150 Identities=11% Similarity=0.106 Sum_probs=119.5
Q ss_pred CcccccCCE-EEEEcCCCeEEEEEcCCCeEEEee---cCCccceEEEEEeeC-CCEEEEecCCCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMK-LLGTSGDGTLSVCNLRKNTVQTRS---EFSEEELTSVVLMKN-GRKVVCGSQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~-l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~ 75 (203)
++|+|++.+ +++++.|+.|++|+....+....+ ..|...|.+++|+|+ +.+|++++.|+.|++||+.+ +..+..
T Consensus 165 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-~~~~~~ 243 (325)
T d1pgua1 165 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKY 243 (325)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEE
T ss_pred ccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc-cccccc
Confidence 468898875 678899999999999887665544 356778999999996 68899999999999999974 567778
Q ss_pred eeccCCCceeEE-E---eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCC-ceEEEEEeCC-CCeEEEEeCCCcEEE
Q 028806 76 FVGLSPNSVDAL-L---KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEY-PIESLALSHD-RKFLGSISHDSMLKL 149 (203)
Q Consensus 76 ~~~~~~~~v~~~-~---~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~i~~i~~~~~-~~~l~~~~~d~~i~i 149 (203)
+.. |..++..+ | .|++.+|++++.|+.|+|||+++++++..+..+... .+..+++.+. +.+|++++.||.|++
T Consensus 244 l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~v 322 (325)
T d1pgua1 244 IED-DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322 (325)
T ss_dssp CCB-TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred ccc-cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEE
Confidence 887 77776554 4 378999999999999999999999999887766431 2334444432 347899999999999
Q ss_pred EeC
Q 028806 150 WDL 152 (203)
Q Consensus 150 wd~ 152 (203)
||+
T Consensus 323 wdl 325 (325)
T d1pgua1 323 YEL 325 (325)
T ss_dssp EET
T ss_pred EEC
Confidence 996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=3.4e-22 Score=149.13 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=126.7
Q ss_pred cccc-cCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCC--eEEEEEcCCccccceeeec
Q 028806 2 TFAA-DAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG--TVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~ 78 (203)
.||| ||+++|+++. |.|++|++.++..++. .|...|.+++|+|||++|++++.+. .|++||+.. .....+..
T Consensus 9 ~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~--~~~~~~~~ 83 (360)
T d1k32a3 9 DFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEE 83 (360)
T ss_dssp EEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT--CCEEECCC
T ss_pred cccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC--CcEEEeeC
Confidence 5899 9999999876 7999999998877653 5888999999999999998776553 799999974 34556677
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe----------CCCcE
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS----------HDSML 147 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~d~~i 147 (203)
+...+.++ |+|++++|++++.++.+++|++.+++....+..+.. .+.+++|+|+|++|+.+. .++.+
T Consensus 84 -~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~ 161 (360)
T d1k32a3 84 -NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161 (360)
T ss_dssp -CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred -CCceEEeeeecccccccceeccccccccccccccceeeeeecccc-cccchhhccceeeeeeeccccccceeeccccce
Confidence 88899999 999999999999999999999999998888887754 788999999999998654 34568
Q ss_pred EEEeCCCcccC
Q 028806 148 KLWDLDDILKG 158 (203)
Q Consensus 148 ~iwd~~~~~~~ 158 (203)
++|++.+....
T Consensus 162 ~v~d~~~~~~~ 172 (360)
T d1k32a3 162 HVYDMEGRKIF 172 (360)
T ss_dssp EEEETTTTEEE
T ss_pred eeeccccCcee
Confidence 99999887544
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5.6e-21 Score=137.91 Aligned_cols=149 Identities=16% Similarity=0.251 Sum_probs=116.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee-----
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF----- 76 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~----- 76 (203)
++++++++||+|+.||+|+|||+.+++++.++.+|...|++++| ++++|++++.|+.+++|++.... .....
T Consensus 20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~-~~~~~~~~~~ 96 (293)
T d1p22a2 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-MLNTLIHHCE 96 (293)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-EEEEECCCCS
T ss_pred EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc-cccccccccc
Confidence 47889999999999999999999999999999999999999877 67899999999999999986421 11000
Q ss_pred --------------------------------------eccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeee
Q 028806 77 --------------------------------------VGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPI 118 (203)
Q Consensus 77 --------------------------------------~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 118 (203)
.. +...+.. ..+....+++++.|+.|++||+++++.+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~-~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~ 174 (293)
T d1p22a2 97 AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVNV-VDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174 (293)
T ss_dssp CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC-CSSCEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ccccccccccceeecccccceeEeeccccccccccccccc-ccccccc-ceecccccccccCCCceeeecCCCCcEEEEE
Confidence 01 1122222 2334567788889999999999999988888
Q ss_pred ccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 119 AEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 119 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
.++.. .+..+.++ +.++++++.|+.|++||+++....
T Consensus 175 ~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~ 211 (293)
T d1p22a2 175 NGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACL 211 (293)
T ss_dssp ECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE
T ss_pred ccccc-ccccccCC--CCeEEEecCCCEEEEEecccceee
Confidence 88754 67666654 568999999999999999877654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=1.3e-21 Score=144.99 Aligned_cols=142 Identities=12% Similarity=0.234 Sum_probs=116.4
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSP 81 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 81 (203)
.|+|+++++++++.|+.|++|++.++..+..+.+|...|.+++++ +++|++++.||.|++||+... ...+.. |.
T Consensus 208 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~ 281 (355)
T d1nexb2 208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY---SRKFSY-HH 281 (355)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTC---CEEEEE-EC
T ss_pred cccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccc---ceeccc-cc
Confidence 578999999999999999999999999999999999999999886 469999999999999999743 234455 56
Q ss_pred CceeEE--EeeCCCEEEEEcCCCcEEEEEccCCceee-eeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeC
Q 028806 82 NSVDAL--LKLDEDRVITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDL 152 (203)
Q Consensus 82 ~~v~~~--~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~ 152 (203)
..+.++ +++++.++++| .|+.|++||+++++++. .+..|.. +|.+++|+|+ ..+++++.||.++||.+
T Consensus 282 ~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~-~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 282 TNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDAD-QIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp TTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCS-EEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCC-CEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 666666 56777766655 58999999999999875 4566754 8999999987 57788889998766643
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=8.9e-21 Score=139.41 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=116.4
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe---EEEeecCCccceEEEEEeeCC-CEEEEecCCCeEEEEEcCCccccceee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT---VQTRSEFSEEELTSVVLMKNG-RKVVCGSQSGTVLLYSWGYFKDCSDRF 76 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~ 76 (203)
|+|+|++++||+|+.||+|+|||+.++. .+.....|..+|.+++|+|++ .+|++|+.|+.|++|++... ......
T Consensus 17 l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~-~~~~~~ 95 (342)
T d1yfqa_ 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS-PSFQAL 95 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS-SSEEEC
T ss_pred EEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc-cccccc
Confidence 5799999999999999999999987542 222333688999999999975 57899999999999999753 333333
Q ss_pred eccCCCc-eeEE-EeeCCCEEEEEcCCCcEEEEEccCCcee----eeeccCC-CCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 77 VGLSPNS-VDAL-LKLDEDRVITGSENGLISLVGILPNRII----QPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 77 ~~~~~~~-v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~----~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.. +... .... +.++...+++++.++.+++||++.+... .....+. ......+.+.+.+..+++++.|+.|++
T Consensus 96 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 174 (342)
T d1yfqa_ 96 TN-NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW 174 (342)
T ss_dssp BS-CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEE
T ss_pred cc-cccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEE
Confidence 33 3333 3333 6788899999999999999998754322 2222221 113456678889999999999999999
Q ss_pred EeCCCcccC
Q 028806 150 WDLDDILKG 158 (203)
Q Consensus 150 wd~~~~~~~ 158 (203)
|+++.....
T Consensus 175 ~~~~~~~~~ 183 (342)
T d1yfqa_ 175 FRLPLCEDD 183 (342)
T ss_dssp EESSCCTTC
T ss_pred EecccCccc
Confidence 999877654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=1.9e-20 Score=139.47 Aligned_cols=151 Identities=12% Similarity=0.026 Sum_probs=124.8
Q ss_pred CcccccCCEEEEEcCC--CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGD--GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|||||++|++++.+ ..|++|+..+++.. .+..|...+.+++|+|++++|++++.++.+++|++.. ......+..
T Consensus 48 ~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~-~~~~~~~~~ 125 (360)
T d1k32a3 48 VRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERS 125 (360)
T ss_dssp EEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC
T ss_pred EEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccc-cceeeeeec
Confidence 4799999999876654 37999999987664 5667889999999999999999999999999999974 566667777
Q ss_pred cCCCceeEE-EeeCCCEEEEEc----------CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcE
Q 028806 79 LSPNSVDAL-LKLDEDRVITGS----------ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSML 147 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i 147 (203)
+...+.++ |+|+|++|+.+. .++.+++|++.+++.......+ . .+..++|+|+|++|++++.++.+
T Consensus 126 -~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~~~s~~~~~ 202 (360)
T d1k32a3 126 -REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN-S-HDYAPAFDADSKNLYYLSYRSLD 202 (360)
T ss_dssp -SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSS-S-BEEEEEECTTSCEEEEEESCCCC
T ss_pred -ccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccc-c-ccccccccCCCCEEEEEeCCCce
Confidence 77888888 999999998654 3456899999887766544433 3 68889999999999999999999
Q ss_pred EEEeCCCcc
Q 028806 148 KLWDLDDIL 156 (203)
Q Consensus 148 ~iwd~~~~~ 156 (203)
.+|+.....
T Consensus 203 ~~~d~~~~~ 211 (360)
T d1k32a3 203 PSPDRVVLN 211 (360)
T ss_dssp CEECSSSSC
T ss_pred Ecccccccc
Confidence 999976543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=4.2e-19 Score=127.93 Aligned_cols=139 Identities=24% Similarity=0.389 Sum_probs=115.0
Q ss_pred ccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCce
Q 028806 5 ADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSV 84 (203)
Q Consensus 5 p~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 84 (203)
+....+++++.|+.|++|++.+++.+..+.++...+..+.++ +..+++++.|+.|++||+.. ...+..+.. +...+
T Consensus 146 ~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~-~~~~v 221 (293)
T d1p22a2 146 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-GACLRVLEG-HEELV 221 (293)
T ss_dssp EETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCEEEEECC-CSSCE
T ss_pred ecccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEeccc-ceeeeeecc-cceee
Confidence 345678888999999999999999999998888888777664 57899999999999999975 456666666 66555
Q ss_pred eEEEeeCCCEEEEEcCCCcEEEEEccC---------CceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEe
Q 028806 85 DALLKLDEDRVITGSENGLISLVGILP---------NRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWD 151 (203)
Q Consensus 85 ~~~~~~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd 151 (203)
.. +.+++.+|++++.||.|++||+.. ..++..+.+|.. .|.+++| ++.+|++++.|++|++||
T Consensus 222 ~~-~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~-~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 222 RC-IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EE-EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-CCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred ee-ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC-CEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 44 577889999999999999999853 245677888865 8999988 467899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.2e-17 Score=120.97 Aligned_cols=135 Identities=10% Similarity=0.127 Sum_probs=97.5
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC-CeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCE
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDR 94 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ 94 (203)
+.+.+|+..++..+..+..+ .. ..++++++..+++++.+ +.+++|++............ +...+.++ |+|++.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~ 176 (287)
T d1pgua2 101 DDLLILQSFTGDIIKSVRLN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETY 176 (287)
T ss_dssp SEEEEEETTTCCEEEEEECS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSE
T ss_pred ccceeeeccceeeeeecccc-ce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeec-cCCceeEEEeccCccc
Confidence 34445554444444444322 22 34567788888877766 47999998643322333334 66789999 9999999
Q ss_pred EEEEcCCCcEEEEEccCCceee-eeccCCCCceEEEEEeCC----------CCeEEEEeCCCcEEEEeCCCcc
Q 028806 95 VITGSENGLISLVGILPNRIIQ-PIAEHSEYPIESLALSHD----------RKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 95 l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~i~~~~~----------~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|++++.+|.|++||+.++.... .+..|.. +|.+++|+|. +.+|++++.|+.|++||+++..
T Consensus 177 l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~ 248 (287)
T d1pgua2 177 IAAGDVMGKILLYDLQSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 248 (287)
T ss_dssp EEEEETTSCEEEEETTTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred cccccccccccceeeccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence 9999999999999999887654 4567755 8999999874 4689999999999999987643
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.79 E-value=3.2e-19 Score=136.95 Aligned_cols=78 Identities=5% Similarity=-0.045 Sum_probs=58.3
Q ss_pred CCceeEE-EeeCCCEEEE-------EcCCCcEEEEEccCCceeeee---------ccCCCCceEEEEEeCCCCeEEEE--
Q 028806 81 PNSVDAL-LKLDEDRVIT-------GSENGLISLVGILPNRIIQPI---------AEHSEYPIESLALSHDRKFLGSI-- 141 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~-------~~~d~~i~~~d~~~~~~~~~~---------~~~~~~~i~~i~~~~~~~~l~~~-- 141 (203)
...+..+ |+|++++|++ +..+++|+|||+.+++...++ ..+.. .+.+++|+|||++++.+
T Consensus 303 ~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~-rv~~~~fSpDGk~i~vs~~ 381 (426)
T d1hzua2 303 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK-RVVQPEYNKRGDEVWFSVW 381 (426)
T ss_dssp SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC-CEEEEEECSSSSEEEEEEC
T ss_pred CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCc-cEEEEEECCCCCEEEEEEe
Confidence 3446667 8999999985 445788999999988766543 22323 68999999999987543
Q ss_pred ---eCCCcEEEEeCCCcccCC
Q 028806 142 ---SHDSMLKLWDLDDILKGS 159 (203)
Q Consensus 142 ---~~d~~i~iwd~~~~~~~~ 159 (203)
+.++.|+|||.++.+...
T Consensus 382 ~~~~~~~~i~v~D~~T~k~~~ 402 (426)
T d1hzua2 382 NGKNDSSALVVVDDKTLKLKA 402 (426)
T ss_dssp CCTTSCCEEEEEETTTTEEEE
T ss_pred cCCCCCCeEEEEECCCCeEEE
Confidence 257889999999987543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=5.4e-18 Score=124.28 Aligned_cols=128 Identities=9% Similarity=0.090 Sum_probs=103.8
Q ss_pred eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccc--cceeeeccCCCceeEE-EeeC-CCEEEEEcCCCc
Q 028806 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKD--CSDRFVGLSPNSVDAL-LKLD-EDRVITGSENGL 103 (203)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~ 103 (203)
+.++..++|...|++|+|+|++++|++++.|++|++||+..... .+..... |..+|.++ |+|+ +.+|++|+.|+.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecC-CCCCEEEEEEeCCCCCEEEEcccccc
Confidence 45677789999999999999999999999999999999965332 2233346 88999999 8886 457889999999
Q ss_pred EEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 104 ISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 104 i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
|++|++..+........+.........+.++...+++++.++.+++||+++..
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~ 133 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred eeeeecccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence 99999988777766655544345566677888999999999999999986654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.76 E-value=2.7e-17 Score=121.44 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=58.8
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~ 68 (203)
++|++++++|++++.+++|.|||+.+++.+.+++ .+...+.+++|+|||++++ ++..++.|++||+.+
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t 71 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT 71 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc
Confidence 5899999999999999999999999999988876 3455678999999999875 556789999999853
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=2.2e-17 Score=127.02 Aligned_cols=146 Identities=10% Similarity=0.011 Sum_probs=113.5
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc-ceeee---ccCCCce
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-SDRFV---GLSPNSV 84 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~---~~~~~~v 84 (203)
++++.+.+|+|.|||..+++++..+..+. .+..++|+|||+++++++.|+.+++||+.+.... ...+. . +.+.+
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~-~~~~~ 111 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIE 111 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC-CCCeE
Confidence 45888999999999999999999998764 6899999999999999999999999999754322 22222 2 33444
Q ss_pred eEE-EeeCCCEE-EEEcCCCcEEEEEccCCceeeeeccCC----------CCceEEEEEeCCCCeEE-EEeCCCcEEEEe
Q 028806 85 DAL-LKLDEDRV-ITGSENGLISLVGILPNRIIQPIAEHS----------EYPIESLALSHDRKFLG-SISHDSMLKLWD 151 (203)
Q Consensus 85 ~~~-~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~i~~i~~~~~~~~l~-~~~~d~~i~iwd 151 (203)
.+. |+|||++| +++..++.|++||..+++++..+..+. ......+.++|++..++ +...++.|.+|+
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence 555 68899986 567779999999999998887765431 22466789999998765 555678999999
Q ss_pred CCCcc
Q 028806 152 LDDIL 156 (203)
Q Consensus 152 ~~~~~ 156 (203)
..+..
T Consensus 192 ~~~~~ 196 (432)
T d1qksa2 192 YTDLN 196 (432)
T ss_dssp TTCSS
T ss_pred ccCCC
Confidence 87654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=2.2e-17 Score=127.03 Aligned_cols=156 Identities=12% Similarity=0.022 Sum_probs=113.2
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCe--EEEee---cCCccceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccce
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNT--VQTRS---EFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~--~~~~~---~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~ 74 (203)
++|||||++|++++.|++|++||+.+++ ....+ ..|...+.+..|+|||++| +++..++.+++||..+ +.++.
T Consensus 67 v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t-~~~~~ 145 (432)
T d1qksa2 67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKK 145 (432)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEEE
T ss_pred EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc-cccee
Confidence 4799999999999999999999998754 33333 3445556666778899986 5677899999999975 44444
Q ss_pred eeec----------cCCCceeEE-EeeCCCEEE-EEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe
Q 028806 75 RFVG----------LSPNSVDAL-LKLDEDRVI-TGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 75 ~~~~----------~~~~~v~~~-~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
.+.. ........+ ++|++..++ +...++.|.+|+..+.+.......+.+..+..++|+|+|+++++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~ 225 (432)
T d1qksa2 146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA 225 (432)
T ss_dssp EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred eeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEec
Confidence 4432 022334455 789888765 4556789999998887655443333333688999999999888777
Q ss_pred -CCCcEEEEeCCCccc
Q 028806 143 -HDSMLKLWDLDDILK 157 (203)
Q Consensus 143 -~d~~i~iwd~~~~~~ 157 (203)
.++.+.++|..+...
T Consensus 226 ~~~~~v~v~d~~~~~~ 241 (432)
T d1qksa2 226 NARNKLVVIDTKEGKL 241 (432)
T ss_dssp GGGTEEEEEETTTTEE
T ss_pred cccceEEEeecccceE
Confidence 456789999877654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=4e-16 Score=114.60 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=55.8
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccCCC
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
++|++.+++.+ ++.|++||+.+++.+..+... . .+.+++|+|+|++|++++.++.|++||+.+++....
T Consensus 248 ~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 248 VNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-H-SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp ECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-S-CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred ecccceEEEEc--cccEEEEECCCCcEEEEEcCC-C-CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 45555555544 478999999999998887654 3 688999999999999999999999999998875543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.71 E-value=7.3e-17 Score=123.68 Aligned_cols=145 Identities=8% Similarity=0.023 Sum_probs=106.3
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc-ceeee---ccCCCce
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-SDRFV---GLSPNSV 84 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~---~~~~~~v 84 (203)
++++.+.||+|+|||+.+++.+.++..+. .+..++|+|||++|++++.|+.+++||+.+.... ...+. . +...+
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~-~~~~~ 111 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE-ARSVE 111 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE-EEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCC-CcceE
Confidence 56788899999999999999999998764 5899999999999999999999999999754321 12222 2 33444
Q ss_pred eEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCC----------CceEEEEEeCCCCeEEEEe-CCCcEEEEe
Q 028806 85 DAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSE----------YPIESLALSHDRKFLGSIS-HDSMLKLWD 151 (203)
Q Consensus 85 ~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~----------~~i~~i~~~~~~~~l~~~~-~d~~i~iwd 151 (203)
.++ |+|+|+++++++ .++.+.+||..++.++..+..+.. .....+.+++++..++... ..+.+.+++
T Consensus 112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~ 191 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 555 789999876655 689999999999888776654421 1345567777777666554 345566665
Q ss_pred CCCc
Q 028806 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
....
T Consensus 192 ~~~~ 195 (426)
T d1hzua2 192 YKDI 195 (426)
T ss_dssp CSSS
T ss_pred eccc
Confidence 5443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=7.5e-16 Score=113.13 Aligned_cols=145 Identities=14% Similarity=0.047 Sum_probs=114.3
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCC--ccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeeccCC---
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFS--EEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGLSP--- 81 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~--- 81 (203)
+++++++.|++|.|||+.+++.+..+..+ ...+.+++|+|||++++ +++.++.|.+||+.+ ++.+..+.. +.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~-~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDL-STPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEEC-CBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC-CcEEEEEec-CCCcc
Confidence 57999999999999999999998887643 34578999999999874 667799999999985 455555543 32
Q ss_pred --CceeEE-EeeCCCEEEEEcC------------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCc
Q 028806 82 --NSVDAL-LKLDEDRVITGSE------------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSM 146 (203)
Q Consensus 82 --~~v~~~-~~~~~~~l~~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 146 (203)
..+..+ |+|++++++++.. +..+.+||..+++.+..+..+ . .+..++|+|+++++++++. .
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~--~ 155 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-R-QITMLAWARDGSKLYGLGR--D 155 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-S-SCCCEEECTTSSCEEEESS--S
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-C-CceEEEEcCCCCEEEEEcC--C
Confidence 223456 8999999987763 567889999999888888765 3 5788999999999998864 4
Q ss_pred EEEEeCCCcccC
Q 028806 147 LKLWDLDDILKG 158 (203)
Q Consensus 147 i~iwd~~~~~~~ 158 (203)
+.+||..++...
T Consensus 156 ~~~~d~~~~~~~ 167 (337)
T d1pbyb_ 156 LHVMDPEAGTLV 167 (337)
T ss_dssp EEEEETTTTEEE
T ss_pred cceeeeecCcEE
Confidence 788998876543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.68 E-value=5.3e-15 Score=107.03 Aligned_cols=153 Identities=15% Similarity=0.158 Sum_probs=116.4
Q ss_pred CcccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC-CeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|+|+++.++ ++..++.+.+|+..+......+..+ ..+..++++|++..+++++.+ +.+.+|+... ......+..
T Consensus 121 ~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 198 (301)
T d1l0qa2 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVKV 198 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC
T ss_pred EEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccc-eeeeecccc
Confidence 36889998764 5566889999999999888777654 457889999999988877654 5666777653 344444443
Q ss_pred cCCCceeEE-EeeCCCEEEEEcC---CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE-EEeCCCcEEEEeCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSE---NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG-SISHDSMLKLWDLD 153 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~iwd~~ 153 (203)
...+..+ +++++..++.++. ++.|++||+.+++.+..+..+ . .+.+++|+|+|++|+ +++.++.|++||+.
T Consensus 199 --~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~-~~~~va~spdg~~l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 199 --EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-P-DPAGIAVTPDGKKVYVALSFCNTVSVIDTA 274 (301)
T ss_dssp --SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-S-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred --cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-C-CEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 3445555 8999998876643 467999999999988888765 3 589999999999874 66678999999999
Q ss_pred CcccCC
Q 028806 154 DILKGS 159 (203)
Q Consensus 154 ~~~~~~ 159 (203)
+++...
T Consensus 275 t~~~~~ 280 (301)
T d1l0qa2 275 TNTITA 280 (301)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 886543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.65 E-value=3.1e-14 Score=102.91 Aligned_cols=142 Identities=17% Similarity=0.186 Sum_probs=113.3
Q ss_pred EEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEE-EEecCCCeEEEEEcCCccccceeeeccCCCceeEE-E
Q 028806 11 LGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKV-VCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-L 88 (203)
Q Consensus 11 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~ 88 (203)
++.+.+++|.|||+.+++.+.++... ..+..++|+|+|++| +++..++.|++||+.+ +..+..+.. +.. +..+ +
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~~-~~~-~~~~~~ 81 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPA-GSS-PQGVAV 81 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEEC-SSS-EEEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCC-Cceeeeeec-ccc-cccccc
Confidence 45678999999999999998888754 457899999999987 4667789999999975 566677766 554 4566 8
Q ss_pred eeCCCEEEE-EcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcccC
Q 028806 89 KLDEDRVIT-GSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDILKG 158 (203)
Q Consensus 89 ~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~ 158 (203)
++++..+++ +..++.+.+|+..+++....+..+ . .+.++.|+|++..++..+ .++.+.+|+..+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 151 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-K-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccccccccccccccceeeecccccceeeeecccc-c-cceEEEeecCCCeeeeeeccccceeeeecccccee
Confidence 999987665 456778999999999888888766 3 578899999998876544 6888999999887644
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=3.6e-14 Score=104.06 Aligned_cols=144 Identities=17% Similarity=0.157 Sum_probs=103.4
Q ss_pred EEEEEcCCCeEEEEEcCCC---eEEEeecCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCccccceee--eccCCC
Q 028806 9 KLLGTSGDGTLSVCNLRKN---TVQTRSEFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDCSDRF--VGLSPN 82 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~--~~~~~~ 82 (203)
.+++++.+++|++|++... +.++.+ .+...+..|+|+|||++|++++ .++.|++|++.......... .. ...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-~~~ 83 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-LPG 83 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-CSS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc-cCC
Confidence 4577789999999998754 223333 4668899999999999986554 58999999997533322211 22 344
Q ss_pred ceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeee--ccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028806 83 SVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPI--AEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
.+..+ |+|+|++|++++. ++.|.+|+.......... ..+.. .+.++.++|+++++++++ .+..|.+|+....
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~ 160 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDD 160 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCc-cceEEEeeecceeeeccccccceeeEEEeccC
Confidence 56667 9999999998875 678999988766544332 23323 678899999999988777 5567999987654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.52 E-value=1.8e-12 Score=96.58 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=49.7
Q ss_pred EEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe--EEEEeCCCcEEEEeCCCcccCCC
Q 028806 97 TGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF--LGSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 97 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~--l~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
....++.+.+||+.+++.+..+... . .+..++|+|||+. +++++.|+.|++||+.+++....
T Consensus 293 ~~~~~~~v~~~d~~t~~~~~~~~~~-~-~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~ 356 (373)
T d2madh_ 293 LHAAAKEVTSVTGLVGQTSSQISLG-H-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred eecCCCeEEEEECCCCcEEEEecCC-C-CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence 3445667899999999988887654 3 6899999999985 45778999999999999876544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.48 E-value=3.3e-13 Score=104.17 Aligned_cols=145 Identities=12% Similarity=0.021 Sum_probs=106.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeec-----CCccceEEEEEeeCCCEEEEecC---------CCeEEEEEc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSE-----FSEEELTSVVLMKNGRKVVCGSQ---------SGTVLLYSW 66 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~wd~ 66 (203)
+.|.++++++.. .++.|.+|++.+++....+. .+...|.++.|+||+++|+.++. ++.+.+||+
T Consensus 22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~ 99 (470)
T d2bgra1 22 LRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (470)
T ss_dssp CEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence 468898887764 46889999999987765443 34567999999999999988743 467899999
Q ss_pred CCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC-----------------CceEE
Q 028806 67 GYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE-----------------YPIES 128 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----------------~~i~~ 128 (203)
.+ ..+..+.. +...+..+ |+|+|+.|+.. .++.+.+|++.+++.......+.. .....
T Consensus 100 ~~--~~~~~l~~-~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~ 175 (470)
T d2bgra1 100 NK--RQLITEER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (470)
T ss_dssp TT--TEECCSSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred CC--Cccccccc-CCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence 74 33455666 77778888 99999999986 456899999988876654432211 12355
Q ss_pred EEEeCCCCeEEEEeCCCc-EEEEe
Q 028806 129 LALSHDRKFLGSISHDSM-LKLWD 151 (203)
Q Consensus 129 i~~~~~~~~l~~~~~d~~-i~iwd 151 (203)
+.|+|||++|++...|.. +..|.
T Consensus 176 ~~wSPDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 176 LWWSPNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEE
T ss_pred cEECCCCCccceeEecCCcCceEE
Confidence 789999999998875433 44443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.45 E-value=6.9e-12 Score=93.36 Aligned_cols=149 Identities=9% Similarity=-0.132 Sum_probs=107.7
Q ss_pred CcccccCCEEEEE-----cCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec----------CCCeEEEEE
Q 028806 1 MTFAADAMKLLGT-----SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYS 65 (203)
Q Consensus 1 l~~sp~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~wd 65 (203)
++++|+|+.+++. +..+.|.+||..+++.+..+..+..+ .++|+|||++|++++ .++.|.+||
T Consensus 26 ~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D 103 (373)
T d2madh_ 26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred cccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEE
Confidence 4689999988764 23467999999999999888765543 789999999998864 357899999
Q ss_pred cCCccccceeeeccCCCc-------eeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC
Q 028806 66 WGYFKDCSDRFVGLSPNS-------VDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~-------v~~~-~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
+.+ ++.+..+.. +... ...+ |+++++.++... .++.+.+|+....+...... ...++.++|++
T Consensus 104 ~~t-~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g 176 (373)
T d2madh_ 104 PVT-FLPIADIEL-PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGA 176 (373)
T ss_pred CCC-CcEEEEEec-CCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-----cceeEEEecCC
Confidence 975 455544443 3222 2334 788888776654 35678888887766554332 34678899998
Q ss_pred CeE-EEEeCCCcEEEEeCCCcccC
Q 028806 136 KFL-GSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 136 ~~l-~~~~~d~~i~iwd~~~~~~~ 158 (203)
+.+ ++.+.|+.+.+|+..+....
T Consensus 177 ~~~~v~~~~dg~~~~~~~~~~~~~ 200 (373)
T d2madh_ 177 PSTFYLLCAQGGLAKTDHAGGAAG 200 (373)
T ss_pred CcEEEEEcCCCeEEEEEcCCceee
Confidence 755 57778999999998776544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.38 E-value=5.3e-12 Score=93.23 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=103.1
Q ss_pred CcccccCCEEEEEc--CCCeEEEEEcCCCeEEEeecCCcc-------c--------------------------------
Q 028806 1 MTFAADAMKLLGTS--GDGTLSVCNLRKNTVQTRSEFSEE-------E-------------------------------- 39 (203)
Q Consensus 1 l~~sp~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~-------~-------------------------------- 39 (203)
++|+|++++++.+. .+..+.+|+..+++.+..+..+.. .
T Consensus 111 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~ 190 (355)
T d2bbkh_ 111 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 190 (355)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred EEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc
Confidence 36899999887664 467899999988876654432211 1
Q ss_pred ------eEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc-ceeeeccC----------CCceeEE-EeeCCCEEEEEcCC
Q 028806 40 ------LTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC-SDRFVGLS----------PNSVDAL-LKLDEDRVITGSEN 101 (203)
Q Consensus 40 ------v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~~----------~~~v~~~-~~~~~~~l~~~~~d 101 (203)
+....+.+++..++.++.++.+++|++...... +..... + ......+ +++++..++....+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~ 269 (355)
T d2bbkh_ 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA-LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 269 (355)
T ss_dssp CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEES-SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCC-cccceEeeeeeccceEEEEEeCCCCeEEEEecc
Confidence 112234444556677778888999988643211 111111 1 1122335 78888887765433
Q ss_pred ----------CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe--EEEEeCCCcEEEEeCCCcccC
Q 028806 102 ----------GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF--LGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 102 ----------~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~--l~~~~~d~~i~iwd~~~~~~~ 158 (203)
..|.+||+.+++.+..+..+ . .+.+++|+|||+. +++++.|+.|++||+.+++..
T Consensus 270 ~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~-~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~ 336 (355)
T d2bbkh_ 270 RDEWRHKTASRFVVVLDAKTGERLAKFEMG-H-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336 (355)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCceeecCCCCeEEEEeCCCCcEEEEecCC-C-CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence 36999999999988887655 3 5889999999973 455667999999999988754
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=3.7e-11 Score=87.67 Aligned_cols=154 Identities=12% Similarity=0.123 Sum_probs=102.5
Q ss_pred CcccccCCEEEEE-cCCCeEEEEEcCCCeEEE---eecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEcCCcccc-ce
Q 028806 1 MTFAADAMKLLGT-SGDGTLSVCNLRKNTVQT---RSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSWGYFKDC-SD 74 (203)
Q Consensus 1 l~~sp~~~~l~~~-~~d~~i~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~-~~ 74 (203)
|+|||||++|+++ ..++.|++|++....... ....+...+..++|+|+|++|++++. ++.+.+|+....... ..
T Consensus 42 la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~ 121 (333)
T d1ri6a_ 42 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121 (333)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecc
Confidence 5799999998554 558999999987542211 11223445678999999999988875 678999987632211 11
Q ss_pred eeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeee-----eccCCCCceEEEEEeCCCCeEEEEe-CCCc
Q 028806 75 RFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQP-----IAEHSEYPIESLALSHDRKFLGSIS-HDSM 146 (203)
Q Consensus 75 ~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~-----~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~ 146 (203)
.... +...+.++ ++|++++++.++. +..|.+|+......... ...........++|++++.+++... ..+.
T Consensus 122 ~~~~-~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~ 200 (333)
T d1ri6a_ 122 DVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS 200 (333)
T ss_dssp EEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred cccC-CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCc
Confidence 2223 44556667 8999999887765 56799999876432211 1111122568899999999887665 5567
Q ss_pred EEEEeCCCc
Q 028806 147 LKLWDLDDI 155 (203)
Q Consensus 147 i~iwd~~~~ 155 (203)
..+|++...
T Consensus 201 ~~v~~~~~~ 209 (333)
T d1ri6a_ 201 VDVWELKDP 209 (333)
T ss_dssp EEEEESSCT
T ss_pred eEEEeeccc
Confidence 778776443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.37 E-value=2.6e-12 Score=96.03 Aligned_cols=157 Identities=9% Similarity=-0.020 Sum_probs=103.4
Q ss_pred CcccccCCEEEEEc----------CCCeEEEEEcCCCeEEEeecCCc-------cceEEEEEeeCCCEEEEec-CCCeEE
Q 028806 1 MTFAADAMKLLGTS----------GDGTLSVCNLRKNTVQTRSEFSE-------EELTSVVLMKNGRKVVCGS-QSGTVL 62 (203)
Q Consensus 1 l~~sp~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~-~d~~i~ 62 (203)
++|+|||+.|++.+ .++.|.+||..+++.+..+..+. .....++|+|||++|+++. .++.+.
T Consensus 70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~ 149 (368)
T d1mdah_ 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEE
Confidence 36899999887753 46789999999998877665322 1234689999999888776 478999
Q ss_pred EEEcCCccccceeee----------------------------------------------------------------c
Q 028806 63 LYSWGYFKDCSDRFV----------------------------------------------------------------G 78 (203)
Q Consensus 63 ~wd~~~~~~~~~~~~----------------------------------------------------------------~ 78 (203)
+||+... .....+. .
T Consensus 150 ~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (368)
T d1mdah_ 150 GLSVPGA-SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA 228 (368)
T ss_dssp EEEETTT-EEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred EEECCCC-cEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence 9987532 1100000 0
Q ss_pred c---------CC-----------------------CceeEE-EeeCCCEEEEEcCC---------CcEEEEEccCCceee
Q 028806 79 L---------SP-----------------------NSVDAL-LKLDEDRVITGSEN---------GLISLVGILPNRIIQ 116 (203)
Q Consensus 79 ~---------~~-----------------------~~v~~~-~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~ 116 (203)
. .. .....+ ++|++..++....+ ..|.+||..+++.+.
T Consensus 229 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~ 308 (368)
T d1mdah_ 229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308 (368)
T ss_dssp BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE
Confidence 0 00 000112 34444554443221 247889999998887
Q ss_pred eeccCCCCceEEEEEeCCCCe-E-EEEeCCCcEEEEeCCCcccCCC
Q 028806 117 PIAEHSEYPIESLALSHDRKF-L-GSISHDSMLKLWDLDDILKGSG 160 (203)
Q Consensus 117 ~~~~~~~~~i~~i~~~~~~~~-l-~~~~~d~~i~iwd~~~~~~~~~ 160 (203)
.+... . .+.+++|+|||+. | +++..++.|++||..+++....
T Consensus 309 ~~~~~-~-~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~ 352 (368)
T d1mdah_ 309 PISNG-H-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp CCEEE-E-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred EecCC-C-ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence 77654 3 6889999999973 3 4556789999999999876544
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.34 E-value=4.8e-12 Score=92.70 Aligned_cols=116 Identities=12% Similarity=0.032 Sum_probs=89.7
Q ss_pred EEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEE-EcCCCcEEEEEccCCceeeeecc
Q 028806 43 VVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVIT-GSENGLISLVGILPNRIIQPIAE 120 (203)
Q Consensus 43 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~ 120 (203)
++|++++++|++++.+++|.+||+.+ ++.+..+..-+...+..+ |+|+|+++++ +..++.|.+||+.+++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t-~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCC-CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 46889999999999999999999985 566666653044556788 9999998754 55789999999999988876654
Q ss_pred CCC-----CceEEEEEeCCCCeEEEEe------------CCCcEEEEeCCCcccCC
Q 028806 121 HSE-----YPIESLALSHDRKFLGSIS------------HDSMLKLWDLDDILKGS 159 (203)
Q Consensus 121 ~~~-----~~i~~i~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~ 159 (203)
... ..+..++|+|||+++++++ .+..+.+|+..++....
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 136 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 136 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee
Confidence 321 1356789999999987665 46779999988776543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.29 E-value=1.1e-10 Score=85.94 Aligned_cols=149 Identities=9% Similarity=-0.050 Sum_probs=97.6
Q ss_pred cccccCCEEEEEc-----CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec----------CCCeEEEEEc
Q 028806 2 TFAADAMKLLGTS-----GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSW 66 (203)
Q Consensus 2 ~~sp~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~wd~ 66 (203)
+.+||++.+++.. ..+.|.+||..+++.+.++..+..+ .++|+||+++|++.+ .++.|.+||+
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence 4689999887653 3567999999999998888755433 699999999887643 4788999999
Q ss_pred CCccccceeeeccCC-------CceeEE-EeeCCCEEEEEc--CCCcEEEEEccCCceeeeeccCCC------CceEEEE
Q 028806 67 GYFKDCSDRFVGLSP-------NSVDAL-LKLDEDRVITGS--ENGLISLVGILPNRIIQPIAEHSE------YPIESLA 130 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~------~~i~~i~ 130 (203)
.+ +..+..+.. +. .....+ |+|+++++++++ .+..+.+|+..+++.+..+..+.. .....+.
T Consensus 86 ~t-~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
T d2bbkh_ 86 VT-LLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM 163 (355)
T ss_dssp TT-CCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred CC-CCEEEEEec-CCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence 75 444444432 21 123445 899999988765 456789999988877766544321 0123345
Q ss_pred EeCCCCeEEEEe-CCCcEEEEeCCC
Q 028806 131 LSHDRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 131 ~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
+++++..++... .++.+.+++...
T Consensus 164 ~~~dg~~~~v~~~~~~~~~~~~~~~ 188 (355)
T d2bbkh_ 164 HCRDGSLAKVAFGTEGTPEITHTEV 188 (355)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCC
T ss_pred EcCCCCEEEEEecCCCeEEEEeccc
Confidence 555555544332 333444444433
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.07 E-value=7.3e-09 Score=78.50 Aligned_cols=150 Identities=11% Similarity=0.054 Sum_probs=100.3
Q ss_pred ccccCCEEEEE-cCCCeEEEEEcCCCeEEEeec-CCccceEEEEEeeCCCE--EEEecCCC-----------------eE
Q 028806 3 FAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSE-FSEEELTSVVLMKNGRK--VVCGSQSG-----------------TV 61 (203)
Q Consensus 3 ~sp~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--l~~~~~d~-----------------~i 61 (203)
++|||++|++. ..++.|.++|+.+.+....++ .....+..++|+|+++. ++..+.+. .+
T Consensus 79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~ 158 (441)
T d1qnia2 79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF 158 (441)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence 57899988655 567899999999998877665 34567999999999974 44433322 22
Q ss_pred EEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCC---------------------------------------
Q 028806 62 LLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN--------------------------------------- 101 (203)
Q Consensus 62 ~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d--------------------------------------- 101 (203)
..+|..+ ......+.. . ..+..+ ++|+|+++++.+.+
T Consensus 159 ~~iD~~t-~~v~~qI~v-~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~ 235 (441)
T d1qnia2 159 TAIDAET-MDVAWQVIV-D-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG 235 (441)
T ss_dssp EEEETTT-CSEEEEEEE-S-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred EeecCcc-ceeeEEEec-C-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC
Confidence 3456553 233333333 2 344556 89999988877643
Q ss_pred --CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEE-eCCCcEEEEeCCCccc
Q 028806 102 --GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSMLKLWDLDDILK 157 (203)
Q Consensus 102 --~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~iwd~~~~~~ 157 (203)
+.+.+++......+..+..+. ....+.++|||++++++ ..+++|.+||+.+..+
T Consensus 236 ~~~v~vvd~~~~~~v~~~IPvgk--sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~ 292 (441)
T d1qnia2 236 DSKVPVVDGRGESEFTRYIPVPK--NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD 292 (441)
T ss_dssp TCCCCEEECSSSCSSEEEECCBS--SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred CCCcEEEEcccCCceEEEEeCCC--CccCceECCCCCEEEEeCCcCCcEEEEEeehhhh
Confidence 233334334444555566553 35789999999987654 5899999999987654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=1.9e-08 Score=71.11 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=88.5
Q ss_pred cccccCCEEEEEcCC---CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CCeEEEEEc--CCc------
Q 028806 2 TFAADAMKLLGTSGD---GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SGTVLLYSW--GYF------ 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~--~~~------ 69 (203)
+|||||+.||..... ..+.+.+...+... .+..+........|+|++..++.... .+...++.. ...
T Consensus 45 ~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (269)
T d2hqsa1 45 AWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT 123 (269)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC
T ss_pred EECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeee
Confidence 699999999876443 34777777666543 33445677788899999987775443 221111111 000
Q ss_pred ------------------------------------cccceeeeccCCCceeEE-EeeCCCEEEEEcCCC-c--EEEEEc
Q 028806 70 ------------------------------------KDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENG-L--ISLVGI 109 (203)
Q Consensus 70 ------------------------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~-~--i~~~d~ 109 (203)
......+.. ........ ++|++..++..+.++ . |.+++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~ 202 (269)
T d2hqsa1 124 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 202 (269)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred eccccccccccccccccceecccccCCceEeeeecccccceeeec-ccccccccccccccceeEEEeecCCceeeeEeec
Confidence 000000111 11223333 799999988776543 3 444555
Q ss_pred cCCceeeeeccCCCCceEEEEEeCCCCeEEEEeC---CCcEEEEeCCCcccC
Q 028806 110 LPNRIIQPIAEHSEYPIESLALSHDRKFLGSISH---DSMLKLWDLDDILKG 158 (203)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~ 158 (203)
..+... .+ .... ......|+|||++|+..+. ...|+++++.+....
T Consensus 203 ~~~~~~-~~-~~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~ 251 (269)
T d2hqsa1 203 ATGGVQ-VL-SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 251 (269)
T ss_dssp TTCCEE-EC-CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred ccccce-Ee-ecCc-cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 444432 22 2223 5678899999999886553 346899999876543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.99 E-value=7.8e-09 Score=76.72 Aligned_cols=146 Identities=11% Similarity=-0.155 Sum_probs=95.2
Q ss_pred cccccCCE--EEE-EcCCC--eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec----------CCCeEEEEEc
Q 028806 2 TFAADAMK--LLG-TSGDG--TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS----------QSGTVLLYSW 66 (203)
Q Consensus 2 ~~sp~~~~--l~~-~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~wd~ 66 (203)
+..++++. ++. ...++ .|.+||..+++.+..+..+..+ .++|+|+++.|++.+ .++.|.+||.
T Consensus 26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~ 103 (368)
T d1mdah_ 26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP 103 (368)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence 34566764 332 33344 4777799999998887765544 589999999888754 3678999999
Q ss_pred CCccccceeeeccCC-------CceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCe
Q 028806 67 GYFKDCSDRFVGLSP-------NSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKF 137 (203)
Q Consensus 67 ~~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 137 (203)
.+ ...+..+.. +. .....+ |+|+|++++++. .++.+.+||+.+++.+..+..+....+ +......
T Consensus 104 ~t-~~~~~~i~~-p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~ 177 (368)
T d1mdah_ 104 VT-FLPIADIEL-PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HPGAAAT 177 (368)
T ss_dssp TT-CCEEEEEEE-TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC----EEEETTE
T ss_pred CC-CcEeeeecC-CccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE----ccCCCce
Confidence 75 344444432 21 123346 899999998876 478999999999998888766533111 1112234
Q ss_pred EEEEeCCCcEEEEeCCCc
Q 028806 138 LGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 138 l~~~~~d~~i~iwd~~~~ 155 (203)
++..+.||.+.++++...
T Consensus 178 ~v~~~~Dg~~~~~~~~~~ 195 (368)
T d1mdah_ 178 HYLGSCPASLAASDLAAA 195 (368)
T ss_dssp EECCCCTTSCEEEECCSS
T ss_pred EEEEcCCCCEEEEEecCC
Confidence 445555666666665443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.98 E-value=1.3e-09 Score=83.63 Aligned_cols=111 Identities=9% Similarity=0.041 Sum_probs=84.7
Q ss_pred EEEEEeeCCCEEEEecCCCeEEEEEcCCccccceee-----eccCCCceeEE-EeeCCCEEEEEcC---------CCcEE
Q 028806 41 TSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRF-----VGLSPNSVDAL-LKLDEDRVITGSE---------NGLIS 105 (203)
Q Consensus 41 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~~~v~~~-~~~~~~~l~~~~~---------d~~i~ 105 (203)
..+.|.+++.++.. .++.+.+||+.+. .....+ .. +...+.++ |+|||++|++++. .+.+.
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~-~~~~~~~~~~~~~-~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~ 95 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYG-NSSVFLENSTFDE-FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTC-CEEEEECTTTTTT-SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCC-CEEEEEchhhhhh-ccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence 35789999887664 4678999999864 332223 33 44678888 9999999998753 46789
Q ss_pred EEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 106 LVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 106 ~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
+||+.+++.. .+..+.. .+..+.|+|||++||... ++.+++|+..++...
T Consensus 96 l~d~~~~~~~-~l~~~~~-~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~ 145 (470)
T d2bgra1 96 IYDLNKRQLI-TEERIPN-NTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY 145 (470)
T ss_dssp EEETTTTEEC-CSSCCCT-TEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred EEECCCCccc-ccccCCc-cccccccccCcceeeEee-cccceEEECCCCcee
Confidence 9999987654 5666655 789999999999999865 678999999887654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.98 E-value=2.8e-08 Score=73.99 Aligned_cols=153 Identities=10% Similarity=0.082 Sum_probs=95.5
Q ss_pred CcccccCCEEEEEcC-CCeEEEEEcCC-CeEE--Eee--cCCccceEEEEEeeCCCEEEEec-CCCeEEEEEcCCcccc-
Q 028806 1 MTFAADAMKLLGTSG-DGTLSVCNLRK-NTVQ--TRS--EFSEEELTSVVLMKNGRKVVCGS-QSGTVLLYSWGYFKDC- 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~-d~~i~vw~~~~-~~~~--~~~--~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~- 72 (203)
++|+|+|++++++.. ...|.+|+... +... ..+ .......+.++|+|+++++++.. .+++|.+|++......
T Consensus 150 v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~ 229 (365)
T d1jofa_ 150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE
Confidence 468999998877653 46788887653 3221 111 22346789999999999886655 5789999998643211
Q ss_pred ceeeec----------------cCCCceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceee-ee-----ccCCC
Q 028806 73 SDRFVG----------------LSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQ-PI-----AEHSE 123 (203)
Q Consensus 73 ~~~~~~----------------~~~~~v~~~-~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~-~~-----~~~~~ 123 (203)
+..... ........+ ++|+|++++++.. ...|..|.+.....+. .. ... +
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-G 308 (365)
T d1jofa_ 230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-G 308 (365)
T ss_dssp EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-C
T ss_pred EEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcC-C
Confidence 111000 011123455 7999999998753 2337677765422111 11 111 2
Q ss_pred CceEEEEEeC-CCCeEEEEe-CCCcEEEEeCCC
Q 028806 124 YPIESLALSH-DRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 124 ~~i~~i~~~~-~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
.....++++| +|++|+++. .++.|.+|++..
T Consensus 309 ~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 309 GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 2456799998 789887775 678999998754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.83 E-value=8.4e-07 Score=63.21 Aligned_cols=151 Identities=11% Similarity=0.100 Sum_probs=102.2
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEee--cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++.++++++++....+.+.+++.. ++.+..+ ..+......+++.++++.+++....+.|++|+.. +..+..+-..
T Consensus 120 avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~--G~~~~~~g~~ 196 (279)
T d1q7fa_ 120 TVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGGE 196 (279)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESCT
T ss_pred ccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC--Cceeeeeccc
Confidence 345666666666666667776644 3444443 3345667889999999888888888999999975 4555554220
Q ss_pred -CCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 80 -SPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 80 -~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.......+ +.++|+++++-.. ++.|.+++ .+|+.+..+.... ....+.+++.|+|++++ +..+..|++|...+.
T Consensus 197 g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 197 GITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred ccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 23345667 7899997776544 45699998 4577776664332 12478899999997554 557889999998766
Q ss_pred cc
Q 028806 156 LK 157 (203)
Q Consensus 156 ~~ 157 (203)
.+
T Consensus 275 ~~ 276 (279)
T d1q7fa_ 275 AP 276 (279)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.76 E-value=4.7e-07 Score=63.87 Aligned_cols=151 Identities=7% Similarity=-0.006 Sum_probs=99.6
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLS 80 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 80 (203)
|+++++++++++....+.+++++..+...+..... ......+++.++++++++-.....+..++... .....+....
T Consensus 62 vav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~ 138 (260)
T d1rwia_ 62 LAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS--KTQTVLPFTG 138 (260)
T ss_dssp EEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTC--SSCEECCCCS
T ss_pred EEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeecccccccccccccc--ceeeeeeecc
Confidence 46778888777766666666665554444333322 34578999999998887766677777777643 2222221102
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
......+ +.++++.+++....+.|..++............... ....|++.++|+++++....+.|..++..+.
T Consensus 139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~-~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred cCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccC-CCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence 3345667 789999888888888899999775443332222223 5688999999988777777888888876543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.76 E-value=4.9e-07 Score=63.81 Aligned_cols=149 Identities=7% Similarity=-0.042 Sum_probs=92.5
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeee-ccC
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFV-GLS 80 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~ 80 (203)
++.++++++++-.....+.+++...................+++.++++.+++...++.|..++.... ....+. . .
T Consensus 104 avd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~--~~~~~~~~-~ 180 (260)
T d1rwia_ 104 AVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN--NQVVLPFT-D 180 (260)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC--CEEECCCS-S
T ss_pred cccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc--eeeeeecc-c
Confidence 45566665555544555555554433222111122234578899999998888888889999987632 222222 2 3
Q ss_pred CCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCC
Q 028806 81 PNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDD 154 (203)
Q Consensus 81 ~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 154 (203)
......+ +.++|+++++....+.|..++..... ...+....-.....|+++++|.++++-..++.|+.++...
T Consensus 181 ~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 181 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 254 (260)
T ss_dssp CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence 3445677 78999888888778888888765432 2222221112567999999998777766677777666543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.74 E-value=2.3e-07 Score=70.16 Aligned_cols=133 Identities=8% Similarity=0.026 Sum_probs=91.9
Q ss_pred EEEEcCCCeEEEEEcCCCeEEEeecC------------------------------CccceEEEEEeeCCCEEEEec-CC
Q 028806 10 LLGTSGDGTLSVCNLRKNTVQTRSEF------------------------------SEEELTSVVLMKNGRKVVCGS-QS 58 (203)
Q Consensus 10 l~~~~~d~~i~vw~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~~-~d 58 (203)
+++++.+|.|+||++.+++.+..+.- |.........+|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 46778899999999999988776531 222344455679999886654 68
Q ss_pred CeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEE--EEcCCC-----------------cEEEEEccCCceeeee
Q 028806 59 GTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVI--TGSENG-----------------LISLVGILPNRIIQPI 118 (203)
Q Consensus 59 ~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~--~~~~d~-----------------~i~~~d~~~~~~~~~~ 118 (203)
++|.++|+.+ .+....+.-.....+..+ |+|+|+.++ ..+.+. .+..+|..+.+...++
T Consensus 94 ~rVavIDl~t-~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 94 TRVARIRLDI-MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TEEEEEETTT-TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CEEEEEECCC-CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 8999999985 344444432034566777 899998543 333221 2355788888777777
Q ss_pred ccCCCCceEEEEEeCCCCeEEEEeCCC
Q 028806 119 AEHSEYPIESLALSHDRKFLGSISHDS 145 (203)
Q Consensus 119 ~~~~~~~i~~i~~~~~~~~l~~~~~d~ 145 (203)
... . ....+.++|+|+++++.+.+.
T Consensus 173 ~v~-~-~p~~v~~spdGk~a~vt~~ns 197 (441)
T d1qnia2 173 IVD-G-NLDNTDADYTGKYATSTCYNS 197 (441)
T ss_dssp EES-S-CCCCEEECSSSSEEEEEESCT
T ss_pred ecC-C-CccceEECCCCCEEEEEecCC
Confidence 665 3 467899999999998887553
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.68 E-value=2.9e-06 Score=61.65 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=92.9
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC--CeEEEEEcCCccccceeeec
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS--GTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~~ 78 (203)
++|.++|+++++-...+.|+.|+..++.....+.........++++++|+++++...+ ....++.+......+..+..
T Consensus 45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~ 124 (319)
T d2dg1a1 45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 124 (319)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc
Confidence 3688899877777778899999988776555554455678899999999988775432 23333333322233332222
Q ss_pred --cCCCceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEE-eCCCcEE
Q 028806 79 --LSPNSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSI-SHDSMLK 148 (203)
Q Consensus 79 --~~~~~v~~~-~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~ 148 (203)
........+ +.++|++.++... .+.+..++...+........- . ....++|+|+++.|+.+ +..+.|.
T Consensus 125 ~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~-~-~pnGia~s~dg~~lyvad~~~~~I~ 202 (319)
T d2dg1a1 125 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI-S-VANGIALSTDEKVLWVTETTANRLH 202 (319)
T ss_dssp SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE-S-SEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred CCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecc-c-eeeeeeeccccceEEEecccCCceE
Confidence 012234556 7899986665432 123555554333322222222 2 45789999999876555 4678899
Q ss_pred EEeCCC
Q 028806 149 LWDLDD 154 (203)
Q Consensus 149 iwd~~~ 154 (203)
.|++..
T Consensus 203 ~~d~~~ 208 (319)
T d2dg1a1 203 RIALED 208 (319)
T ss_dssp EEEECT
T ss_pred EEEEcC
Confidence 998754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.67 E-value=2e-06 Score=61.95 Aligned_cols=153 Identities=13% Similarity=0.076 Sum_probs=100.7
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeec-c
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVG-L 79 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~ 79 (203)
++++|||+++++...+++|+.|+..... ..+......+.+++|.++++++++...++.+..++..........+.. .
T Consensus 33 iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (302)
T d2p4oa1 33 LASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP 110 (302)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred EEECCCCCEEEEeCCCCEEEEEeCCCCE--EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccC
Confidence 4789999999999989999998865432 233334567899999999999888888888888877533222222221 0
Q ss_pred CCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeecc--------CC-CCceEEEEEeCCCCeEEEEeCCCcEEE
Q 028806 80 SPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAE--------HS-EYPIESLALSHDRKFLGSISHDSMLKL 149 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--------~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i 149 (203)
.......+ +.++++++++-+..+.+..++...+........ .. ......+.++.+ ..+++.+..+.|..
T Consensus 111 ~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~-~l~~~~~~~~~i~~ 189 (302)
T d2p4oa1 111 DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN-FLYVSNTEKMLLLR 189 (302)
T ss_dssp TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT-EEEEEETTTTEEEE
T ss_pred CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC-ceeeecCCCCeEEe
Confidence 23446667 789998888888888888888776543221110 10 113455555432 34445557788888
Q ss_pred EeCCCcc
Q 028806 150 WDLDDIL 156 (203)
Q Consensus 150 wd~~~~~ 156 (203)
+++....
T Consensus 190 ~~~~~~~ 196 (302)
T d2p4oa1 190 IPVDSTD 196 (302)
T ss_dssp EEBCTTS
T ss_pred ccccccc
Confidence 8876543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.4e-07 Score=72.35 Aligned_cols=147 Identities=14% Similarity=0.059 Sum_probs=93.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC---CccceEEEEEeeCCCEEEEec---------CCCeEEEEEcCCc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF---SEEELTSVVLMKNGRKVVCGS---------QSGTVLLYSWGYF 69 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~---------~d~~i~~wd~~~~ 69 (203)
.|.+++.++. -..+|.|.+|++.+++....+.. ....+....|+||+++++... ..+.+.+||+.+.
T Consensus 23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 5777776654 35678999999987754333322 223567788999999887653 3467889998742
Q ss_pred cccceeeec--cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCc-----------------eEEE
Q 028806 70 KDCSDRFVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYP-----------------IESL 129 (203)
Q Consensus 70 ~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-----------------i~~i 129 (203)
.. ..+.. .....+... |+|+|+.|+... ++.|.+.+...+..++......... -..+
T Consensus 102 -~~-~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~ 178 (465)
T d1xfda1 102 -DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (465)
T ss_dssp -CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred -ce-eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence 22 22221 023344445 899999998875 5578888877666554443221111 1467
Q ss_pred EEeCCCCeEEEEe-CCCcEEEEeC
Q 028806 130 ALSHDRKFLGSIS-HDSMLKLWDL 152 (203)
Q Consensus 130 ~~~~~~~~l~~~~-~d~~i~iwd~ 152 (203)
-|||||++||... .+..+..+.+
T Consensus 179 ~WSPDgk~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 179 WWSPDGTRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEE
T ss_pred EECCCCCeEEEEEecccccceeec
Confidence 7999999999876 3444555544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.59 E-value=5.3e-06 Score=60.09 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=78.2
Q ss_pred ceEEEEEeeCCC-----EEEEecCCCeEEEEEcCCccccc-----eeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEE
Q 028806 39 ELTSVVLMKNGR-----KVVCGSQSGTVLLYSWGYFKDCS-----DRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLV 107 (203)
Q Consensus 39 ~v~~~~~~~~~~-----~l~~~~~d~~i~~wd~~~~~~~~-----~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~ 107 (203)
..+.++|+|++. ++++-+..+.|..|++...+... ..+..........+ +..+|++.++....+.|.+|
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~ 252 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence 356889999764 44455668889999886432221 11111012234456 78899988887778899999
Q ss_pred EccCCceeeeeccCCCCceEEEEEeCCCCeE-EEEeCCCcEEEEeCCC
Q 028806 108 GILPNRIIQPIAEHSEYPIESLALSHDRKFL-GSISHDSMLKLWDLDD 154 (203)
Q Consensus 108 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~iwd~~~ 154 (203)
|...+..+..+..... ...+++|.|+++.| ++.+.++.|..+++..
T Consensus 253 dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 253 GPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 9887777666665533 67899999998755 5555778888888744
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.8e-06 Score=66.02 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=91.4
Q ss_pred cccccCCEEEEEc---------CCCeEEEEEcCCCeEEEee--cCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcc
Q 028806 2 TFAADAMKLLGTS---------GDGTLSVCNLRKNTVQTRS--EFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 2 ~~sp~~~~l~~~~---------~d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 70 (203)
.||||+++|+... ..+.+.++|+.++...... ......+....|+|+|+.|+... ++.|++.+... +
T Consensus 67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~-~ 144 (465)
T d1xfda1 67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG-K 144 (465)
T ss_dssp EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS-S
T ss_pred EECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCC-C
Confidence 4899999887753 3578999999987653322 22344566788999999988765 56788887753 2
Q ss_pred ccceeeeccCCC-----------------ceeEE-EeeCCCEEEEEcCC-Cc----------------------------
Q 028806 71 DCSDRFVGLSPN-----------------SVDAL-LKLDEDRVITGSEN-GL---------------------------- 103 (203)
Q Consensus 71 ~~~~~~~~~~~~-----------------~v~~~-~~~~~~~l~~~~~d-~~---------------------------- 103 (203)
...+....-... .-..+ |+|+|++|+....| ..
T Consensus 145 ~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~ 224 (465)
T d1xfda1 145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE 224 (465)
T ss_dssp CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC
T ss_pred ceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCC
Confidence 322222110111 11356 79999999976421 22
Q ss_pred -----EEEEEccCCceeeeecc-----CCCCceEEEEEeCCCCeEEEEeC-C---CcEEEEeCCCcccC
Q 028806 104 -----ISLVGILPNRIIQPIAE-----HSEYPIESLALSHDRKFLGSISH-D---SMLKLWDLDDILKG 158 (203)
Q Consensus 104 -----i~~~d~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~-d---~~i~iwd~~~~~~~ 158 (203)
+.++|+.++........ ....-+..+.|+|++++++.... + ..|.++|..++...
T Consensus 225 np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~ 293 (465)
T d1xfda1 225 NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (465)
T ss_dssp CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence 34444443322111110 00112567899999876655431 1 24788888877654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.50 E-value=2.5e-06 Score=63.15 Aligned_cols=154 Identities=9% Similarity=0.082 Sum_probs=88.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCC-CeEEEee-cCCccceEEEEEeeCCCEEE--Eec-CCCeEEEEEcCCcccccee
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRK-NTVQTRS-EFSEEELTSVVLMKNGRKVV--CGS-QSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~--~~~-~d~~i~~wd~~~~~~~~~~ 75 (203)
|+|+|++++|+++.. +.+..|.+.. +...... .........+.++++++.++ +.. ..+.+..+.+.........
T Consensus 45 la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~ 123 (365)
T d1jofa_ 45 MTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCccee
Confidence 578999999887755 5677777653 3332211 11122344567777777433 322 2355555544221111110
Q ss_pred ---------------eeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccC-Ccee--eeec-cCCCCceEEEEEeCC
Q 028806 76 ---------------FVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILP-NRII--QPIA-EHSEYPIESLALSHD 134 (203)
Q Consensus 76 ---------------~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~-~~~~--~~~~-~~~~~~i~~i~~~~~ 134 (203)
.......-+.++ |+|+|+++++++. ...|.+|+... +... .... ...+...+.++|+|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pd 203 (365)
T d1jofa_ 124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT 203 (365)
T ss_dssp EEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT
T ss_pred EeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCC
Confidence 010011234567 9999999888765 45788887653 3222 1111 111235789999999
Q ss_pred CCeEEEEe-CCCcEEEEeCCCc
Q 028806 135 RKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 135 ~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
++++++.. .++.|.+|++...
T Consensus 204 g~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 204 GNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTT
T ss_pred CceEEEeccCCCEEEEEEecCC
Confidence 99887666 6789999998654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.48 E-value=7e-06 Score=58.93 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=88.8
Q ss_pred eEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEE
Q 028806 28 TVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISL 106 (203)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~ 106 (203)
+.+..+.. ...+..+++.|+|+++++...+++|+.|+.. +. ...+.. ....+.++ |.++|+++++...++.+..
T Consensus 19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g~-~~~~~~-~~~~~~gla~~~dG~l~v~~~~~~~~~~ 93 (302)
T d2p4oa1 19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD--GN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV 93 (302)
T ss_dssp EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT--CC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC--CC-EEEEEc-CCCCcceEEEcCCCCeEEEecCCceEEE
Confidence 34444432 2357889999999999998889999888854 23 334444 56778888 8999999888888888888
Q ss_pred EEccCCc--eeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcc
Q 028806 107 VGILPNR--IIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDIL 156 (203)
Q Consensus 107 ~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 156 (203)
++..... ...............+++.++++++++.+.++.+..++..+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~ 145 (302)
T d2p4oa1 94 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 145 (302)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCc
Confidence 8875432 2222221212357889999999998888888888888876653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.40 E-value=4.3e-05 Score=55.12 Aligned_cols=154 Identities=12% Similarity=0.060 Sum_probs=93.1
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCc----cceEEEEEeeCCCEEEEecC---------------CCeE
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSE----EELTSVVLMKNGRKVVCGSQ---------------SGTV 61 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~---------------d~~i 61 (203)
|+|.++++.|+++...+.|..++.............. ...+.+++.++|++.++-.. .|.|
T Consensus 76 l~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v 155 (314)
T d1pjxa_ 76 CQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred EEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceE
Confidence 4678889888777766778888877654322111111 12577899999988776322 2344
Q ss_pred EEEEcCCccccceeeeccCCCceeEE-EeeCCC----EE-EEEcCCCcEEEEEccCCcee------eeeccCCCCceEEE
Q 028806 62 LLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDED----RV-ITGSENGLISLVGILPNRII------QPIAEHSEYPIESL 129 (203)
Q Consensus 62 ~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~----~l-~~~~~d~~i~~~d~~~~~~~------~~~~~~~~~~i~~i 129 (203)
+.++.. +....... .......+ |+|++. .| ++-+..+.|..|++.....+ ..+..........|
T Consensus 156 ~~~~~d--g~~~~~~~--~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi 231 (314)
T d1pjxa_ 156 YCFTTD--GQMIQVDT--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEECTT--SCEEEEEE--EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred EEEeec--CceeEeeC--CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceee
Confidence 444432 33322222 22234556 888764 34 44466788999987643222 12222211135679
Q ss_pred EEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 130 ALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 130 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
++..+|+..++....+.|.+||..++...
T Consensus 232 avD~~GnlyVa~~~~g~I~~~dp~~g~~~ 260 (314)
T d1pjxa_ 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPK 260 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCS
T ss_pred EEecCCcEEEEEcCCCEEEEEeCCCCEEE
Confidence 99999998877777899999998766543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.32 E-value=7.2e-05 Score=52.85 Aligned_cols=151 Identities=6% Similarity=0.071 Sum_probs=98.0
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC------CccceEEEEEeeCCC-EEEE-ecCCCeEEEEEcCCcccc
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF------SEEELTSVVLMKNGR-KVVC-GSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~-~l~~-~~~d~~i~~wd~~~~~~~ 72 (203)
|+++|+++++++-..++.|++|+.. +..+..+.. .......+++.++.. .+++ .+.++.|.+++.. +..
T Consensus 28 vavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~ 104 (279)
T d1q7fa_ 28 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQF 104 (279)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCE
T ss_pred EEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc--ccc
Confidence 4678888877776777889999865 555544421 112345566665543 3333 3345677777653 445
Q ss_pred ceeeeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEEeCCCcEEEE
Q 028806 73 SDRFVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSISHDSMLKLW 150 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~iw 150 (203)
...+..........+ +.+++.++++....+.+.+++. +++.+..+.... ......+++.++++.+++....+.|++|
T Consensus 105 ~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~ 183 (279)
T d1q7fa_ 105 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF 183 (279)
T ss_dssp EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred eeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeee
Confidence 544433123445566 7888998888888888888885 456665542221 2257789999999888888888999999
Q ss_pred eCCCc
Q 028806 151 DLDDI 155 (203)
Q Consensus 151 d~~~~ 155 (203)
+....
T Consensus 184 d~~G~ 188 (279)
T d1q7fa_ 184 NYEGQ 188 (279)
T ss_dssp ETTCC
T ss_pred ecCCc
Confidence 97644
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.18 E-value=8e-05 Score=51.95 Aligned_cols=109 Identities=11% Similarity=0.081 Sum_probs=69.7
Q ss_pred ccccc--CCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC----CC--eEEEEEcCCccccc
Q 028806 2 TFAAD--AMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ----SG--TVLLYSWGYFKDCS 73 (203)
Q Consensus 2 ~~sp~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~--~i~~wd~~~~~~~~ 73 (203)
..||+ |+.|+..+. +.|.+.++.+++.. .+..+...+...+|+|||+.|+.... +. .|.+++... ...
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~--g~~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN--GEI 80 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT--TEE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC--Cce
Confidence 46899 999887654 67999999988764 45566677899999999999886532 22 356666543 222
Q ss_pred eeeeccC-------CCceeEE-EeeCCCEEEEEcCC------CcEEEEEccCCcee
Q 028806 74 DRFVGLS-------PNSVDAL-LKLDEDRVITGSEN------GLISLVGILPNRII 115 (203)
Q Consensus 74 ~~~~~~~-------~~~v~~~-~~~~~~~l~~~~~d------~~i~~~d~~~~~~~ 115 (203)
..+.. . ....... |+|+|+.|+..... ..+...+...+...
T Consensus 81 ~~lt~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (281)
T d1k32a2 81 KRITY-FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV 135 (281)
T ss_dssp EECCC-CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred EEeee-cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence 22321 1 1223445 89999998875432 23455555544443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=0.00033 Score=48.52 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=77.8
Q ss_pred eEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecC-CC--eEEEEEcCCccccceeeeccCCCceeEE-EeeCCC
Q 028806 18 TLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQ-SG--TVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDED 93 (203)
Q Consensus 18 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~ 93 (203)
.|+|.|......... ..+...+.+.+|||||+.|+.... .+ .+.+.+.. ......+.. +....... |+|+|.
T Consensus 20 ~l~i~d~dG~~~~~l-~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~spdg~ 95 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA--NGAVRQVAS-FPRHNGAPAFSPDGS 95 (269)
T ss_dssp EEEEEETTSCSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--TCCEEEEEC-CSSCEEEEEECTTSS
T ss_pred EEEEEcCCCCCcEEE-ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecc--cCceeEEee-eecccccceecCCCC
Confidence 588888775544333 334567889999999999986544 22 45555554 333444554 56666667 899999
Q ss_pred EEEEEcC-CCcEEE--EEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCC--cEEEEeCCCcc
Q 028806 94 RVITGSE-NGLISL--VGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDS--MLKLWDLDDIL 156 (203)
Q Consensus 94 ~l~~~~~-d~~i~~--~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~--~i~iwd~~~~~ 156 (203)
.++.... .+...+ +.............. . ......+++++..++..+ .++ .|.+.++.+..
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~ 162 (269)
T d2hqsa1 96 KLAFALSKTGSLNLYVMDLASGQIRQVTDGR-S-NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA 162 (269)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCEEECCCCS-S-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred eeeEeeecCCccceeecccccccceeeeecc-c-cccccccccccccceecccccCCceEeeeeccccc
Confidence 9887654 333233 332223333322222 2 445567788777655444 444 45666665543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.10 E-value=0.00031 Score=50.58 Aligned_cols=151 Identities=12% Similarity=0.113 Sum_probs=88.6
Q ss_pred CcccccCCEEEEEcC----CCeEEEEEcCCCeEEEeecC--CccceEEEEEeeCCCEEEEecC------CCeEEEEEcCC
Q 028806 1 MTFAADAMKLLGTSG----DGTLSVCNLRKNTVQTRSEF--SEEELTSVVLMKNGRKVVCGSQ------SGTVLLYSWGY 68 (203)
Q Consensus 1 l~~sp~~~~l~~~~~----d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd~~~ 68 (203)
|+|+++|+++++... .+.+...+..+......... ....+..+++.++|++.++... .+.+..++..
T Consensus 87 la~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d- 165 (319)
T d2dg1a1 87 IKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD- 165 (319)
T ss_dssp EEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-
T ss_pred EEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-
Confidence 457788877666432 23344445444433332221 2345778999999987666432 1234444433
Q ss_pred ccccceeeeccCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCC-ceeeee------ccCCCCceEEEEEeCCCCeEE
Q 028806 69 FKDCSDRFVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPN-RIIQPI------AEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~~~-~~~~~~------~~~~~~~i~~i~~~~~~~~l~ 139 (203)
+..+..+.. .......+ |+|+++.|+.+ +..+.|..|++... ...... ..........|++.++|++.+
T Consensus 166 -g~~~~~~~~-~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~V 243 (319)
T d2dg1a1 166 -FRTVTPIIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV 243 (319)
T ss_dssp -SCCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE
T ss_pred -cceeEEEee-ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEE
Confidence 333343333 33345667 89999877655 55788999987632 211111 111011356799999999888
Q ss_pred EEeCCCcEEEEeCCC
Q 028806 140 SISHDSMLKLWDLDD 154 (203)
Q Consensus 140 ~~~~d~~i~iwd~~~ 154 (203)
+....+.|.+|+...
T Consensus 244 a~~~~g~V~~~~p~G 258 (319)
T d2dg1a1 244 AMYGQGRVLVFNKRG 258 (319)
T ss_dssp EEETTTEEEEECTTS
T ss_pred EEcCCCEEEEECCCC
Confidence 888889999999643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.78 E-value=0.00017 Score=50.19 Aligned_cols=95 Identities=7% Similarity=0.039 Sum_probs=63.5
Q ss_pred EEeeC--CCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcC-C-----CcEEEEEccCCce
Q 028806 44 VLMKN--GRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-N-----GLISLVGILPNRI 114 (203)
Q Consensus 44 ~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d-----~~i~~~d~~~~~~ 114 (203)
.++|+ |+.++..+ ++.|.+.|+.. + ..+.+.. +....... |+|||+.|+.... + ..|.++++.+++.
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~-g-~~~~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKS-G-STRKIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTT-C-CEEEEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCC-C-CEEEEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence 45788 98887664 46788888863 3 3455666 66677777 9999999987543 2 2477778777765
Q ss_pred eeeeccCC-----CCceEEEEEeCCCCeEEEEe
Q 028806 115 IQPIAEHS-----EYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 115 ~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~ 142 (203)
........ ......+.|+|+++.|+...
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 54322110 11346788999999988654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.78 E-value=0.0025 Score=45.08 Aligned_cols=135 Identities=12% Similarity=0.053 Sum_probs=84.9
Q ss_pred ccccCCEEEEEcC----CCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEE-ecCCCeEEEEEcCCcccc----c
Q 028806 3 FAADAMKLLGTSG----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVC-GSQSGTVLLYSWGYFKDC----S 73 (203)
Q Consensus 3 ~sp~~~~l~~~~~----d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~~----~ 73 (203)
+.|+|++.++... .+.-.+|.+..++....... -.....++|+++++.++. -+..+.|+.|++...... .
T Consensus 110 vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~ 188 (295)
T d2ghsa1 110 MHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA 188 (295)
T ss_dssp ECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC
T ss_pred ECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccce
Confidence 4567766555422 22344555556654443332 334678999999986654 455788999987532111 1
Q ss_pred ee---eeccCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEe-CCCCeEEEE
Q 028806 74 DR---FVGLSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALS-HDRKFLGSI 141 (203)
Q Consensus 74 ~~---~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~ 141 (203)
.. +.. ..+....+ +..+|++.++.-..+.|..||. .|+.+..+..... .+++++|- |+.+.|+..
T Consensus 189 ~~~~~~~~-~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 189 EVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp EEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEE
T ss_pred EEEeccCc-ccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEE
Confidence 11 122 23345666 7889988877777888999995 6888888877644 68999996 566665543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.64 E-value=0.004 Score=46.21 Aligned_cols=147 Identities=10% Similarity=0.083 Sum_probs=90.6
Q ss_pred ccCCEEEEEc-CCCeEEEEEcCCCeEEEeecC-CccceEEEEEee--CCCEEEEecCCC------------------eEE
Q 028806 5 ADAMKLLGTS-GDGTLSVCNLRKNTVQTRSEF-SEEELTSVVLMK--NGRKVVCGSQSG------------------TVL 62 (203)
Q Consensus 5 p~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~d~------------------~i~ 62 (203)
+||++|++.. .++.|-+.|+.+-++.+.++. ....+..+...+ ...+++..+... .+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 4788887664 578899999999887665543 234567666654 456776655522 355
Q ss_pred EEEcCCccccceeeeccCCCceeEE-EeeCCCEEEEEcCC--------------------------------------Cc
Q 028806 63 LYSWGYFKDCSDRFVGLSPNSVDAL-LKLDEDRVITGSEN--------------------------------------GL 103 (203)
Q Consensus 63 ~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d--------------------------------------~~ 103 (203)
++|..+. .....+.- ......+ ++|+|+++++.+.+ +.
T Consensus 177 ~ID~~tm-~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing 253 (459)
T d1fwxa2 177 AVDADKW-EVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 253 (459)
T ss_dssp EEETTTT-EEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEecCCc-eEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence 6776542 22222222 2344556 89999998887642 11
Q ss_pred EEEEEccC--C-ceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCcc
Q 028806 104 ISLVGILP--N-RIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDIL 156 (203)
Q Consensus 104 i~~~d~~~--~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 156 (203)
+.+.|.+. + ..+..+... . ....+..+|||+++++++ .+.++.|+|++...
T Consensus 254 V~VVD~~~~~~~~v~~yIPVp-K-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~ 308 (459)
T d1fwxa2 254 VKVVDGRKEASSLFTRYIPIA-N-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 308 (459)
T ss_dssp EEEEECSGG--CSSEEEEEEE-S-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred ceeecccccCCcceeEEEecC-C-CCCceEECCCCCEEEEeCCcCCcEEEEEehhhh
Confidence 23333322 1 122223333 2 356789999999988777 78999999997654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.45 E-value=0.0052 Score=47.54 Aligned_cols=55 Identities=9% Similarity=0.177 Sum_probs=38.5
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEe
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS 142 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~ 142 (203)
..-.+.+++.++.||.++.+|.++|+.+..+.......-.-|.+..+|+ ||++..
T Consensus 465 l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a 520 (560)
T d1kv9a2 465 LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (560)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 3445678888999999999999999999888665321111255666774 665443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.34 E-value=0.011 Score=41.57 Aligned_cols=147 Identities=8% Similarity=0.078 Sum_probs=89.8
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCCCeEEEeecC----CccceEEEEEeeCCCEEEEecC----CCeEEEEEcCCccccc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEF----SEEELTSVVLMKNGRKVVCGSQ----SGTVLLYSWGYFKDCS 73 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~ 73 (203)
++.++|.+++++ . ..|.++|..+++....... ....++.+.+.|+|++.++... .+.-.+|.+.. +...
T Consensus 65 ~~~~dg~l~va~-~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-g~~~ 141 (295)
T d2ghsa1 65 AKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVT 141 (295)
T ss_dssp EEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEE
T ss_pred EEecCCCEEEEE-e-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC-CcEE
Confidence 455677666654 4 3588999998865433221 1235788999999987776432 23445565543 3332
Q ss_pred eeeeccCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCC------ce-e-eeeccCCCCceEEEEEeCCCCeEEEEeC
Q 028806 74 DRFVGLSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPN------RI-I-QPIAEHSEYPIESLALSHDRKFLGSISH 143 (203)
Q Consensus 74 ~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~~~------~~-~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 143 (203)
..+. .......+ |+++++.++.+ +..+.|..|++... +. + ..+... ......+++..+|++.++.-.
T Consensus 142 ~~~~--~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~-~g~pdG~~vD~~GnlWva~~~ 218 (295)
T d2ghsa1 142 KLFA--DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWG 218 (295)
T ss_dssp EEEE--EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEET
T ss_pred EEee--ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcc-cccccceEEcCCCCEEeeeeC
Confidence 2222 22334455 89999876655 45778888887421 11 1 112222 225678999999987777667
Q ss_pred CCcEEEEeCCC
Q 028806 144 DSMLKLWDLDD 154 (203)
Q Consensus 144 d~~i~iwd~~~ 154 (203)
.+.|..||...
T Consensus 219 ~g~V~~~dp~G 229 (295)
T d2ghsa1 219 EGAVDRYDTDG 229 (295)
T ss_dssp TTEEEEECTTC
T ss_pred CCceEEecCCC
Confidence 78899999643
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.27 E-value=0.01 Score=46.02 Aligned_cols=54 Identities=7% Similarity=0.082 Sum_probs=37.5
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEe
Q 028806 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS 142 (203)
Q Consensus 89 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~ 142 (203)
...+.++++++.||.++.+|.++|+.+..+.......-.-|.|..+|+ ||+..+
T Consensus 485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~ 539 (573)
T d1kb0a2 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV 539 (573)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 446778888999999999999999999887654321111255556775 555433
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.25 E-value=0.0067 Score=47.16 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=39.4
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCC-CeEEEE
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDR-KFLGSI 141 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~ 141 (203)
.+..+.++++++.||.++.+|.++|+.+..++......-.-|.|..+| +|++..
T Consensus 493 lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 493 LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 456677888899999999999999999988876533211226677788 466543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.25 E-value=0.0069 Score=46.97 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=38.1
Q ss_pred eeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEEe
Q 028806 89 KLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSIS 142 (203)
Q Consensus 89 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~ 142 (203)
...+.++++++.|+.++.+|.++|+.+..+.......-.-|.|..+|+ ||++..
T Consensus 472 ~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 472 YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence 445677888999999999999999999888655332122356666774 665543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.83 E-value=0.026 Score=43.91 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=37.9
Q ss_pred EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCC-eEEEE
Q 028806 88 LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRK-FLGSI 141 (203)
Q Consensus 88 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~ 141 (203)
.+..+.+++.|+.||.++.+|..+|+.+..+.......-.-|.|..+|+ ||+..
T Consensus 480 lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~ 534 (596)
T d1w6sa_ 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (596)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEE
Confidence 4556778888999999999999999999888655331112245556774 56543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.67 E-value=0.071 Score=39.46 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=81.2
Q ss_pred EEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCC---------------eEEEEEc-----------------
Q 028806 19 LSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSG---------------TVLLYSW----------------- 66 (203)
Q Consensus 19 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i~~wd~----------------- 66 (203)
+.++|..+.+....+.-. .....+.++++|+++++.+.+. .+.++++
T Consensus 175 ~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing 253 (459)
T d1fwxa2 175 FTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 253 (459)
T ss_dssp EEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence 567888888777666532 3466789999999998876432 2333333
Q ss_pred ------CCc-c-ccceeeeccCCCceeEE-EeeCCCEEEEEcC-CCcEEEEEccCC------------ceeeeeccCCCC
Q 028806 67 ------GYF-K-DCSDRFVGLSPNSVDAL-LKLDEDRVITGSE-NGLISLVGILPN------------RIIQPIAEHSEY 124 (203)
Q Consensus 67 ------~~~-~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~~~d~~~~------------~~~~~~~~~~~~ 124 (203)
... + .....+.. . .....+ ++|+|+++++++. +.++.|+|++.- ......... .
T Consensus 254 V~VVD~~~~~~~~v~~yIPV-p-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg-l- 329 (459)
T d1fwxa2 254 VKVVDGRKEASSLFTRYIPI-A-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-L- 329 (459)
T ss_dssp EEEEECSGG--CSSEEEEEE-E-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC-S-
T ss_pred ceeecccccCCcceeEEEec-C-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC-c-
Confidence 210 0 11111221 2 223455 8999999987765 789999998631 111212212 1
Q ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 125 PIESLALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 125 ~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
.-..-+|+..|.-..+.--|..|.-|++...
T Consensus 330 gPLht~fd~~g~aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 330 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred CccccccCCCceEEEEeeccceEEEEecchh
Confidence 3456789888865556668999999998543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.64 E-value=0.029 Score=40.50 Aligned_cols=149 Identities=11% Similarity=-0.057 Sum_probs=82.2
Q ss_pred ccCCEEEEEcCC-----C------eEEEEEcCCCeEE--Ee-ecCCccceEEEEEeeCCCEEEEecCC-CeEEEEEcCCc
Q 028806 5 ADAMKLLGTSGD-----G------TLSVCNLRKNTVQ--TR-SEFSEEELTSVVLMKNGRKVVCGSQS-GTVLLYSWGYF 69 (203)
Q Consensus 5 p~~~~l~~~~~d-----~------~i~vw~~~~~~~~--~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~ 69 (203)
.+|+.++.|+.. + .+.+||..++.-. .. ...+.......++.+++.+++.|+.+ ..+.+||..+.
T Consensus 29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~ 108 (387)
T d1k3ia3 29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD 108 (387)
T ss_dssp TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC
Confidence 467777777642 1 3678998876421 11 12222223456788999999988764 58999998642
Q ss_pred cccceeeecc--CCCceeEEEeeCCCEEEEEcCC------CcEEEEEccCCceeeeecc--------CCC-----CceEE
Q 028806 70 KDCSDRFVGL--SPNSVDALLKLDEDRVITGSEN------GLISLVGILPNRIIQPIAE--------HSE-----YPIES 128 (203)
Q Consensus 70 ~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~--------~~~-----~~i~~ 128 (203)
....+... .......+..++|++++.++.. ..+.+||+.+.+-...-.. ... ..-..
T Consensus 109 --~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (387)
T d1k3ia3 109 --SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW 186 (387)
T ss_dssp --EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred --cccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeE
Confidence 22222210 1112223357789999988753 3588999877543211000 000 00011
Q ss_pred EEEeCCCCeEEEEeCCCcEEEEeCCCc
Q 028806 129 LALSHDRKFLGSISHDSMLKLWDLDDI 155 (203)
Q Consensus 129 i~~~~~~~~l~~~~~d~~i~iwd~~~~ 155 (203)
+..-++++.++.++..+.+.+++..+.
T Consensus 187 ~~~~~~G~~~~~g~~~~~~~~~~~~~~ 213 (387)
T d1k3ia3 187 LFGWKKGSVFQAGPSTAMNWYYTSGSG 213 (387)
T ss_dssp EEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred EEEeCCCCEEEecCcCCcEEecCcccC
Confidence 223346666666666666666665554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.61 E-value=0.054 Score=37.33 Aligned_cols=152 Identities=9% Similarity=-0.073 Sum_probs=90.0
Q ss_pred cccccCCEEEEE-cCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEE-EecCCCeEEEEEcCCccccceeeecc
Q 028806 2 TFAADAMKLLGT-SGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVV-CGSQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
+|.+..+.|.-+ ...+.|+..++........+......+.++++..-+..|+ +-...+.|.+.++.. .....+...
T Consensus 42 d~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg--~~~~~l~~~ 119 (263)
T d1npea_ 42 AFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRVLFDT 119 (263)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC--ceEEEEecc
Confidence 455555555444 4457787777765544333433335678899987566665 444577999999863 222333320
Q ss_pred CCCceeEE-EeeCCCEEEEEcCC---CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCC
Q 028806 80 SPNSVDAL-LKLDEDRVITGSEN---GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 80 ~~~~v~~~-~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
....+..+ +.|...+++..... ..|...++............ -.....+++.+.++.|+.+. ..+.|...++..
T Consensus 120 ~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~-~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g 198 (263)
T d1npea_ 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN-LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (263)
T ss_dssp SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTT-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeec-ccccceEEEeecCcEEEEEeCCCCEEEEEECCC
Confidence 33556777 78887777755432 23444455433222222222 22567899998888776654 567888888866
Q ss_pred cc
Q 028806 155 IL 156 (203)
Q Consensus 155 ~~ 156 (203)
..
T Consensus 199 ~~ 200 (263)
T d1npea_ 199 PG 200 (263)
T ss_dssp EE
T ss_pred CC
Confidence 54
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.56 E-value=0.065 Score=37.68 Aligned_cols=103 Identities=10% Similarity=0.071 Sum_probs=63.6
Q ss_pred ccccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCC
Q 028806 3 FAADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPN 82 (203)
Q Consensus 3 ~sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 82 (203)
.+|..+.||.-+ ..++.++|+++.+.+..+.-. ..|.-=.|-.+.. |+..+ +..|+-|++.....+...+.. |..
T Consensus 70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~-L~lVT-~taVYHW~~~g~s~P~k~fdR-~~~ 144 (327)
T d1utca2 70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDR-HSS 144 (327)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSSE-EEEEC-SSEEEEEESSSSCCCEEEEEC-CGG
T ss_pred cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCCE-EEEEc-CCceEEEcccCCCCchhhhhh-ccc
Confidence 468888887765 468999999999888776643 4566667765543 33333 357999999644455555544 332
Q ss_pred ----ceeEE-EeeCCCEEEEEcC-------CCcEEEEEcc
Q 028806 83 ----SVDAL-LKLDEDRVITGSE-------NGLISLVGIL 110 (203)
Q Consensus 83 ----~v~~~-~~~~~~~l~~~~~-------d~~i~~~d~~ 110 (203)
.|-.- .+++.++++..+- .|.+.+|..+
T Consensus 145 L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e 184 (327)
T d1utca2 145 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 184 (327)
T ss_dssp GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec
Confidence 12222 3666776664321 2556677654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.068 Score=36.84 Aligned_cols=152 Identities=11% Similarity=-0.107 Sum_probs=88.3
Q ss_pred cccccCCEEEE-EcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEec--CCCeEEEEEcCCccccceeeec
Q 028806 2 TFAADAMKLLG-TSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGS--QSGTVLLYSWGYFKDCSDRFVG 78 (203)
Q Consensus 2 ~~sp~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~ 78 (203)
++.+.++.|.. -...+.|.+.++........+.........++++|...+|+... ..+.|...++. +.....+..
T Consensus 83 AvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d--Gs~~~~l~~ 160 (266)
T d1ijqa1 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVT 160 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEEC
T ss_pred EEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC--CCceecccc
Confidence 34444444433 34567888888876655444444456688999998666665543 34456666664 333333332
Q ss_pred cCCCceeEE-EeeCCCEEEEE-cCCCcEEEEEccCCceeeeeccCC-CCceEEEEEeCCCCeEEEE-eCCCcEEEEeCCC
Q 028806 79 LSPNSVDAL-LKLDEDRVITG-SENGLISLVGILPNRIIQPIAEHS-EYPIESLALSHDRKFLGSI-SHDSMLKLWDLDD 154 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~-~~d~~i~iwd~~~ 154 (203)
........+ +.+.+..|+.+ ...+.|...++............. ......+++. +.+|... ..++.|...+..+
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~ 238 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 238 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCC
Confidence 033455677 78877777766 446788888886543332222221 1134567765 3455544 4677888888766
Q ss_pred ccc
Q 028806 155 ILK 157 (203)
Q Consensus 155 ~~~ 157 (203)
+..
T Consensus 239 g~~ 241 (266)
T d1ijqa1 239 GSD 241 (266)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.42 E-value=0.037 Score=39.76 Aligned_cols=152 Identities=9% Similarity=0.058 Sum_probs=81.5
Q ss_pred cccccCCEEEEEcC------------CCeEEEEEcCCCeE-EEe--ecCC-----ccceEEEEEe--eCCC-EEEEec--
Q 028806 2 TFAADAMKLLGTSG------------DGTLSVCNLRKNTV-QTR--SEFS-----EEELTSVVLM--KNGR-KVVCGS-- 56 (203)
Q Consensus 2 ~~sp~~~~l~~~~~------------d~~i~vw~~~~~~~-~~~--~~~~-----~~~v~~~~~~--~~~~-~l~~~~-- 56 (203)
+..|+|..+++++. .|.|.++|+.+... ... +.+. .-....+.+- +++. +|++..
T Consensus 41 ~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~ 120 (340)
T d1v04a_ 41 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP 120 (340)
T ss_dssp EECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred EECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEecc
Confidence 45678876666532 48899999875421 111 1111 1123455443 3454 344432
Q ss_pred -CCCeEEEEEcCCcccccee---eeccCCCceeEE-EeeCCCEEEEEcC---------------CCcEEEEEccCCceee
Q 028806 57 -QSGTVLLYSWGYFKDCSDR---FVGLSPNSVDAL-LKLDEDRVITGSE---------------NGLISLVGILPNRIIQ 116 (203)
Q Consensus 57 -~d~~i~~wd~~~~~~~~~~---~~~~~~~~v~~~-~~~~~~~l~~~~~---------------d~~i~~~d~~~~~~~~ 116 (203)
...+|.+|++......+.- +..........+ +..++.++++-.. -....+|....+....
T Consensus 121 ~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~ 200 (340)
T d1v04a_ 121 GSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV 200 (340)
T ss_dssp TTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEE
T ss_pred CCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEE
Confidence 3567888888543322221 111012335566 6677777766211 1223344444444333
Q ss_pred eeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCCc
Q 028806 117 PIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDDI 155 (203)
Q Consensus 117 ~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~ 155 (203)
..... . ....|+++|++++|+++. ..+.|++|++...
T Consensus 201 ~~~~l-~-~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 201 VAEGF-D-FANGINISPDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp EEEEE-S-SEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred EcCCC-C-ccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence 33332 2 468899999998877665 6788999988643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.28 E-value=0.078 Score=38.08 Aligned_cols=118 Identities=11% Similarity=-0.048 Sum_probs=69.1
Q ss_pred ceEEEEEeeCCCEEEEecCCC-----------eEEEEEcCCccc-cceeeeccCCCceeE-EEeeCCCEEEEEcCC-CcE
Q 028806 39 ELTSVVLMKNGRKVVCGSQSG-----------TVLLYSWGYFKD-CSDRFVGLSPNSVDA-LLKLDEDRVITGSEN-GLI 104 (203)
Q Consensus 39 ~v~~~~~~~~~~~l~~~~~d~-----------~i~~wd~~~~~~-~~~~~~~~~~~~v~~-~~~~~~~~l~~~~~d-~~i 104 (203)
++.......+++.++.|+... .+.+||..+..- ........+...... ++.+++.+++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 344444445777777776421 367899874321 111122101111222 378899999988765 579
Q ss_pred EEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCC------CcEEEEeCCCcc
Q 028806 105 SLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHD------SMLKLWDLDDIL 156 (203)
Q Consensus 105 ~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~iwd~~~~~ 156 (203)
.+||..+..-...-.......-..++..+|+++++.++.. ..+.+||..+..
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 9999987654432222211123457778899998888742 358899987653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.10 E-value=0.2 Score=38.52 Aligned_cols=55 Identities=16% Similarity=-0.005 Sum_probs=37.4
Q ss_pred CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 102 GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 102 ~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|.|.-+|+.+|+.+.+..... +..+-.+.-.+.++++++.|+.++.+|.++++.-
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~--~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l 498 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccEEEeccCCCceeeEcCCCC--CCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence 457778888888876664331 1222122334567778999999999999998754
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.69 E-value=0.2 Score=35.22 Aligned_cols=144 Identities=15% Similarity=0.082 Sum_probs=86.3
Q ss_pred cccCCEEEEEc---C----CCeEEEEEcCCCeEEEeecCCccceEEEEEeeC--C-CEEEEe---cCCCeEEEEEcCCcc
Q 028806 4 AADAMKLLGTS---G----DGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKN--G-RKVVCG---SQSGTVLLYSWGYFK 70 (203)
Q Consensus 4 sp~~~~l~~~~---~----d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~l~~~---~~d~~i~~wd~~~~~ 70 (203)
+++.+.++..+ . .|.+.+|+.+.+ .-+.+++|.+....+.+..+ . ..|+.+ ...+.+.+-++....
T Consensus 156 d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~ 234 (327)
T d1utca2 156 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 234 (327)
T ss_dssp CTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCC
T ss_pred CCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCc
Confidence 56677654432 1 367889998765 34677777655544443211 1 122222 223678888886422
Q ss_pred cccee--------eec--cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEE
Q 028806 71 DCSDR--------FVG--LSPNSVDAL-LKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLG 139 (203)
Q Consensus 71 ~~~~~--------~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 139 (203)
..-.. +.. ....-.-++ .++.-..++..+.-|.|++||++++.++..-+-..+ .|...+-+....=++
T Consensus 235 ~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~-~iF~~a~~~~~~Gi~ 313 (327)
T d1utca2 235 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGII 313 (327)
T ss_dssp TTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEE
T ss_pred cCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCC-ceEEeccCCCCceEE
Confidence 11111 111 011223344 688888999999999999999999999877766544 677656555555566
Q ss_pred EEeCCCcEEE
Q 028806 140 SISHDSMLKL 149 (203)
Q Consensus 140 ~~~~d~~i~i 149 (203)
.....|.+..
T Consensus 314 ~VNr~GqVl~ 323 (327)
T d1utca2 314 GVNRKGQVLS 323 (327)
T ss_dssp EEETTSEEEE
T ss_pred EECCCCeEEE
Confidence 6667776643
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.68 E-value=0.21 Score=38.27 Aligned_cols=55 Identities=7% Similarity=-0.037 Sum_probs=39.4
Q ss_pred CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCCcEEEEeCCCcccC
Q 028806 102 GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDSMLKLWDLDDILKG 158 (203)
Q Consensus 102 ~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 158 (203)
|.|.-+|+.+++.+....... +...-.+.-.+.+++.++.||.++.+|..+++.-
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~--~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L 492 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEeCCCCeEeeeccCCC--CCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence 467788999998887765442 2222233345667888899999999999998754
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.63 E-value=0.18 Score=34.50 Aligned_cols=151 Identities=5% Similarity=-0.120 Sum_probs=86.5
Q ss_pred cccccCCEEE-EEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC-C--eEEEEEcCCccccceeee
Q 028806 2 TFAADAMKLL-GTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS-G--TVLLYSWGYFKDCSDRFV 77 (203)
Q Consensus 2 ~~sp~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~~wd~~~~~~~~~~~~ 77 (203)
++..-+..|. +-...+.|.+.++........+...-..+..+++.|...+++..... + .|..-++. +.....+.
T Consensus 85 AvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d--G~~~~~i~ 162 (263)
T d1npea_ 85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--GTNRRILA 162 (263)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--SCCCEEEE
T ss_pred EEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC--CCCceeee
Confidence 3443344443 33455678888877554332333333568899999977776654322 2 34444543 33333332
Q ss_pred ccCCCceeEE-EeeCCCEEEEEc-CCCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEeCCC
Q 028806 78 GLSPNSVDAL-LKLDEDRVITGS-ENGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWDLDD 154 (203)
Q Consensus 78 ~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd~~~ 154 (203)
...-.....+ +.+.++.|+.+. ..+.|...++........+... . ....|++. +.+|+... ..+.|...|..+
T Consensus 163 ~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~ 238 (263)
T d1npea_ 163 QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAI 238 (263)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred eecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC-C-CcEEEEEE--CCEEEEEECCCCEEEEEECCC
Confidence 2023445677 788777776664 5678888888654444344433 2 34577775 44555444 667888888876
Q ss_pred cccC
Q 028806 155 ILKG 158 (203)
Q Consensus 155 ~~~~ 158 (203)
+...
T Consensus 239 g~~~ 242 (263)
T d1npea_ 239 SKEM 242 (263)
T ss_dssp TEEE
T ss_pred Cccc
Confidence 6543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.24 Score=33.92 Aligned_cols=151 Identities=10% Similarity=-0.044 Sum_probs=84.9
Q ss_pred cccccCCEEEEE-cCCCeEEEEEcCCCe----EEEeecCCccceEEEEEeeCCCEEEEe-cCCCeEEEEEcCCcccccee
Q 028806 2 TFAADAMKLLGT-SGDGTLSVCNLRKNT----VQTRSEFSEEELTSVVLMKNGRKVVCG-SQSGTVLLYSWGYFKDCSDR 75 (203)
Q Consensus 2 ~~sp~~~~l~~~-~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~ 75 (203)
+|++..+.|.-+ ...+.|+..++.... ....+......+..|++.+-+..|+.+ ...+.|.+.++.. ......
T Consensus 36 d~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g-~~~~~~ 114 (266)
T d1ijqa1 36 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTL 114 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEE
T ss_pred EEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC-ceEEEE
Confidence 345555544443 234555555543211 111222223446678888766655554 4567899999863 232233
Q ss_pred eeccCCCceeEE-EeeCCCEEEEEcC--CCcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEe-CCCcEEEEe
Q 028806 76 FVGLSPNSVDAL-LKLDEDRVITGSE--NGLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSIS-HDSMLKLWD 151 (203)
Q Consensus 76 ~~~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~iwd 151 (203)
+.. .......+ .+|...+|+.... .+.|...++............-. ....+++.+.+..|+.+. ..+.|...+
T Consensus 115 ~~~-~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~-~p~gl~iD~~~~~lYw~d~~~~~I~~~~ 192 (266)
T d1ijqa1 115 FRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSID 192 (266)
T ss_dssp EEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EcC-CCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccc-eeeEEEeeccccEEEEecCCcCEEEEEE
Confidence 333 44556777 7887666665543 34566666654333333332222 568899999887777664 567888888
Q ss_pred CCCc
Q 028806 152 LDDI 155 (203)
Q Consensus 152 ~~~~ 155 (203)
+.+.
T Consensus 193 ~dG~ 196 (266)
T d1ijqa1 193 VNGG 196 (266)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.20 E-value=0.12 Score=38.15 Aligned_cols=95 Identities=8% Similarity=-0.007 Sum_probs=56.7
Q ss_pred cccccCCEEEEEc-----CCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCC----------------Ce
Q 028806 2 TFAADAMKLLGTS-----GDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQS----------------GT 60 (203)
Q Consensus 2 ~~sp~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------~~ 60 (203)
++||+++++|.+- .-..|+++|+.+++.+.... .......++|.+++..|+....+ ..
T Consensus 131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~ 209 (430)
T d1qfma1 131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (430)
T ss_dssp EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred EecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccCCcce
Confidence 5789999987642 23479999999998754221 11223568899999987754322 25
Q ss_pred EEEEEcCCcccc-ceeeeccCCCc--eeEE-EeeCCCEEEEE
Q 028806 61 VLLYSWGYFKDC-SDRFVGLSPNS--VDAL-LKLDEDRVITG 98 (203)
Q Consensus 61 i~~wd~~~~~~~-~~~~~~~~~~~--v~~~-~~~~~~~l~~~ 98 (203)
+.++.+.+.... ...+.. .... +..+ .+.++++++..
T Consensus 210 v~~h~lgt~~~~d~~v~~e-~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 210 LYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp EEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEE
T ss_pred EEEEECCCCcccccccccc-ccCCceEEeeeccCCcceeeEE
Confidence 777777643222 122222 2222 3334 57888887643
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.99 E-value=0.45 Score=35.26 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=34.5
Q ss_pred CcccccCCEEEEEcCCCeEEEEEcCCCeEE--Eeec------CCccceEEEEEeeC
Q 028806 1 MTFAADAMKLLGTSGDGTLSVCNLRKNTVQ--TRSE------FSEEELTSVVLMKN 48 (203)
Q Consensus 1 l~~sp~~~~l~~~~~d~~i~vw~~~~~~~~--~~~~------~~~~~v~~~~~~~~ 48 (203)
|+|.|+++++++--..|.|++++..++... ..+. ........|+++|+
T Consensus 32 la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred EEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 578999998888755799999988776443 2221 12356789999985
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.92 E-value=0.41 Score=34.35 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=84.8
Q ss_pred cccCCEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEee----CC--CEEEEec-CC---CeEEEEEcCCccccc
Q 028806 4 AADAMKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMK----NG--RKVVCGS-QS---GTVLLYSWGYFKDCS 73 (203)
Q Consensus 4 sp~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~----~~--~~l~~~~-~d---~~i~~wd~~~~~~~~ 73 (203)
.|...+|+.....+-|++||+. |+.+..+. .+++..+..-. .+ ..+++++ .+ .+|.+|.+......+
T Consensus 37 ~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 37 NPQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp CGGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred CcCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 3455677777777789999986 66666664 35666666432 22 2244444 22 368888775332233
Q ss_pred eeeecc------CCCceeEE--E-eeC-CC-EEEEEcCCCcEEEEEccC---C----ceeeeeccCCCCceEEEEEeCCC
Q 028806 74 DRFVGL------SPNSVDAL--L-KLD-ED-RVITGSENGLISLVGILP---N----RIIQPIAEHSEYPIESLALSHDR 135 (203)
Q Consensus 74 ~~~~~~------~~~~v~~~--~-~~~-~~-~l~~~~~d~~i~~~d~~~---~----~~~~~~~~~~~~~i~~i~~~~~~ 135 (203)
..+... ....++.+ + ++. +. ++++...+|.+..|.+.. + +.+..+.... .+..+.+.+..
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~--q~EGCVvDde~ 191 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS--QTEGMAADDEY 191 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS--CEEEEEEETTT
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC--ccceEEEeCCC
Confidence 322210 11224444 2 454 44 445566688888887642 2 2344454442 58889999998
Q ss_pred CeEEEEeCCCcEEEEeC
Q 028806 136 KFLGSISHDSMLKLWDL 152 (203)
Q Consensus 136 ~~l~~~~~d~~i~iwd~ 152 (203)
..|+.+-.+.-|..+++
T Consensus 192 ~~LyisEE~~Giw~~~a 208 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSA 208 (353)
T ss_dssp TEEEEEETTTEEEEEES
T ss_pred CcEEEecCccceEEEEe
Confidence 89988887766655554
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.62 E-value=0.25 Score=37.96 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=50.2
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCcee-EE-EeeCCC-
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVD-AL-LKLDED- 93 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~-~~-~~~~~~- 93 (203)
|.|.-+|+.+++.+.....+ .++..-..+..+.+++.++.|+.++.+|..+ ++.+-.+.. ...... -+ +..+|+
T Consensus 466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~T-Ge~LW~~~~-~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQT-GSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC-SSCCCSCCEEEEETTEE
T ss_pred CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCC-CcEeEEEEC-CCCccccCEEEEECCEE
Confidence 67888898998888776543 2233223445677888899999999999986 455555543 222222 13 667885
Q ss_pred EEEE
Q 028806 94 RVIT 97 (203)
Q Consensus 94 ~l~~ 97 (203)
|++.
T Consensus 543 Yv~i 546 (582)
T d1flga_ 543 YLGV 546 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.77 E-value=1.2 Score=32.40 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=58.4
Q ss_pred eEEEEEeeCCCEEEEec-C----CCeEEEEEcCCccccce-eeeccCCCceeEE-EeeCCCEEEEEcCC-----------
Q 028806 40 LTSVVLMKNGRKVVCGS-Q----SGTVLLYSWGYFKDCSD-RFVGLSPNSVDAL-LKLDEDRVITGSEN----------- 101 (203)
Q Consensus 40 v~~~~~~~~~~~l~~~~-~----d~~i~~wd~~~~~~~~~-~~~~~~~~~v~~~-~~~~~~~l~~~~~d----------- 101 (203)
+....++|++++++.+- . -..++++|+.+. ..+. .+.. .....+ |.+++..|+....+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg-~~~~~~i~~---~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~ 202 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA-KELPDVLER---VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT-EEEEEEEEE---ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcc-eeccccccc---ccccceEEcCCCCEEEEEEeccccCccccccc
Confidence 45667899999887532 2 347999999864 3332 2222 112345 88999887754322
Q ss_pred -----CcEEEEEccCCce--eeeeccCCC-CceEEEEEeCCCCeEEEE
Q 028806 102 -----GLISLVGILPNRI--IQPIAEHSE-YPIESLALSHDRKFLGSI 141 (203)
Q Consensus 102 -----~~i~~~d~~~~~~--~~~~~~~~~-~~i~~i~~~~~~~~l~~~ 141 (203)
..|.++.+.+... ...+..... ..+..+..++++++++..
T Consensus 203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence 2577777766532 223332211 245667789999987643
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=92.66 E-value=0.68 Score=35.64 Aligned_cols=110 Identities=12% Similarity=0.049 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCeEEEEEc-CCCeEEEeecCCcc-----------ceEEEEEeeC----CCEEEEecCCCeEEEEEcCCcc
Q 028806 7 AMKLLGTSGDGTLSVCNL-RKNTVQTRSEFSEE-----------ELTSVVLMKN----GRKVVCGSQSGTVLLYSWGYFK 70 (203)
Q Consensus 7 ~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~-----------~v~~~~~~~~----~~~l~~~~~d~~i~~wd~~~~~ 70 (203)
+.+.++++..+.+...+. .+|+.+..+..... .-+.+++.++ ...++.++.|+.|.-.|..+.
T Consensus 63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG- 141 (596)
T d1w6sa_ 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG- 141 (596)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC-
T ss_pred CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC-
Confidence 333444555678888887 57988887642110 0134555443 246788888999999998864
Q ss_pred ccceeeeccCC----CceeEE-EeeCCCEEEEEcC------CCcEEEEEccCCceeeeec
Q 028806 71 DCSDRFVGLSP----NSVDAL-LKLDEDRVITGSE------NGLISLVGILPNRIIQPIA 119 (203)
Q Consensus 71 ~~~~~~~~~~~----~~v~~~-~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~ 119 (203)
+.+..+.. .. ..++.- .- -+..++.+.. .|.|+-+|+.+|+.+..+.
T Consensus 142 ~~~w~~~~-~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 142 ETVWKVEN-SDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CEEEEEEC-CCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ceeccccc-cccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence 44333321 11 111111 11 1334555443 4889999999999987653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.64 E-value=1.2 Score=32.10 Aligned_cols=133 Identities=10% Similarity=0.025 Sum_probs=74.0
Q ss_pred cccccCCEEEEEcCCCeEEEEEcCC---------CeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccc
Q 028806 2 TFAADAMKLLGTSGDGTLSVCNLRK---------NTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDC 72 (203)
Q Consensus 2 ~~sp~~~~l~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 72 (203)
++++...++++|+.++ +.|..+.. .......+..-..|..++|+.+ .|+.. .++.+..++.... ..
T Consensus 43 AVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~l-~~ 117 (381)
T d1xipa_ 43 DISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEEL-SE 117 (381)
T ss_dssp EEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSST-TC
T ss_pred EEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeecc-cc
Confidence 4566666777776654 56665321 0000000111235888999754 45544 3456888887532 22
Q ss_pred ceeeeccCCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeec-----cCCCCceEEEEEeCCCCeEEEEe
Q 028806 73 SDRFVGLSPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIA-----EHSEYPIESLALSHDRKFLGSIS 142 (203)
Q Consensus 73 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~ 142 (203)
...... ...++..+ .+....++....++.+.++++..+....... .-.. .+.+++|++.+..++++.
T Consensus 118 ~~~~~~-~~~~~~~~-~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~-~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 118 FRTVTS-FEKPVFQL-KNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTN-SQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp EEEEEE-CSSCEEEE-EECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECS-SEEEEEETTSCEEEEEEE
T ss_pred cccccc-ccccccce-ecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecC-CceEEEEeCCcEEEEEeC
Confidence 222222 23455555 2333567777788899999988775433211 1112 578888888888777764
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=92.53 E-value=0.5 Score=36.18 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=46.9
Q ss_pred CeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCccccceeeeccCCCceeE-E-EeeCCC
Q 028806 17 GTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDRFVGLSPNSVDA-L-LKLDED 93 (203)
Q Consensus 17 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~-~-~~~~~~ 93 (203)
|.|.-||+.+++.+...+... +...-..+-.+.++++++.|+.++.+|..+ ++.+-.+.. ....... + |..+|+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~T-Ge~LW~~~~-~~~~~~~P~ty~~~Gk 532 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPT-GTGVVAAPSTYMVDGR 532 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC-SSCCCSCCEEEEETTE
T ss_pred ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCC-CcEeEEEEC-CCCccccCEEEEECCE
Confidence 468888999998887765322 222222344677888899999999999986 455555543 2221111 2 556776
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.57 E-value=3.6 Score=27.41 Aligned_cols=66 Identities=9% Similarity=0.029 Sum_probs=33.9
Q ss_pred eeCCCEEEEEcCC-----CcEEEEEccCCceeeeeccCCCCceEEEEEeCCCCeEEEEeCCC-----cEEEEeCCCc
Q 028806 89 KLDEDRVITGSEN-----GLISLVGILPNRIIQPIAEHSEYPIESLALSHDRKFLGSISHDS-----MLKLWDLDDI 155 (203)
Q Consensus 89 ~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~~ 155 (203)
...+.+++.++.+ ..+..+|..+.+....-.......-.+++. .+++.++.|+.++ .|.+||+.+.
T Consensus 193 ~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 193 VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCC
Confidence 4455666665543 346677776654332211111111112222 3677777776443 3778888764
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.61 E-value=6 Score=28.36 Aligned_cols=85 Identities=14% Similarity=0.003 Sum_probs=46.8
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCCCEEEEecCCCeEEEEEcCCcccccee------eeccCCC
Q 028806 9 KLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNGRKVVCGSQSGTVLLYSWGYFKDCSDR------FVGLSPN 82 (203)
Q Consensus 9 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~------~~~~~~~ 82 (203)
.|+.. .++.+.+++...-...........++.++.++|. .++....++.+.++++... ..... +.. ..
T Consensus 98 ~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~-~~~~~~~~v~~~~~--~~ 171 (381)
T d1xipa_ 98 QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-STKQLAQNVTSFDV--TN 171 (381)
T ss_dssp EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-CEEEEEESEEEEEE--CS
T ss_pred EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccC-ccccccCCcceEEe--cC
Confidence 34443 3356777776653222222223456788887764 5566666889999998643 21111 111 23
Q ss_pred ceeEE-EeeCCCEEEEEc
Q 028806 83 SVDAL-LKLDEDRVITGS 99 (203)
Q Consensus 83 ~v~~~-~~~~~~~l~~~~ 99 (203)
.+.++ |++.|..++++.
T Consensus 172 ~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 172 SQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp SEEEEEETTSCEEEEEEE
T ss_pred CceEEEEeCCcEEEEEeC
Confidence 45555 666666666653
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.36 E-value=6.6 Score=28.68 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=25.3
Q ss_pred cceEEEEEeeCCCEEEEecCCCeEEEEEcCC
Q 028806 38 EELTSVVLMKNGRKVVCGSQSGTVLLYSWGY 68 (203)
Q Consensus 38 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 68 (203)
...++|+|.|++++|++--..|.|++++...
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~ 57 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPES 57 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCC
Confidence 4578999999999988875578999987653
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=82.34 E-value=6.5 Score=27.84 Aligned_cols=137 Identities=16% Similarity=0.180 Sum_probs=78.7
Q ss_pred CeEEEEEcCC-CeEEEeecCC-------ccceEEEEE--eeC-CC-EEEEecCCCeEEEEEcCCcc------ccceeeec
Q 028806 17 GTLSVCNLRK-NTVQTRSEFS-------EEELTSVVL--MKN-GR-KVVCGSQSGTVLLYSWGYFK------DCSDRFVG 78 (203)
Q Consensus 17 ~~i~vw~~~~-~~~~~~~~~~-------~~~v~~~~~--~~~-~~-~l~~~~~d~~i~~wd~~~~~------~~~~~~~~ 78 (203)
.+|.+|.+.. ...+..+... ...+..+++ ++. +. ++++....|.+..|.+...+ ..++.+..
T Consensus 99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~ 178 (353)
T d1h6la_ 99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM 178 (353)
T ss_dssp CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC
T ss_pred eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC
Confidence 3677887752 2233333321 123566776 453 43 45667778999988774211 23334443
Q ss_pred cCCCceeEE-EeeCCCEEEEEcCCCcEEEEEccC-----Cceeeeecc-CCCCceEEEEEeC--CCC-eEEEEe-CCCcE
Q 028806 79 LSPNSVDAL-LKLDEDRVITGSENGLISLVGILP-----NRIIQPIAE-HSEYPIESLALSH--DRK-FLGSIS-HDSML 147 (203)
Q Consensus 79 ~~~~~v~~~-~~~~~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~-~~~~~i~~i~~~~--~~~-~l~~~~-~d~~i 147 (203)
...+..| +......|+.+-.+.-|+.++... +..+....+ +-...+..+++-. ++. ||++++ .+++.
T Consensus 179 --~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f 256 (353)
T d1h6la_ 179 --NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSY 256 (353)
T ss_dssp --SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred --CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeE
Confidence 3445555 888888999988877777776542 122222222 1123567776543 333 655555 67889
Q ss_pred EEEeCCCc
Q 028806 148 KLWDLDDI 155 (203)
Q Consensus 148 ~iwd~~~~ 155 (203)
.+||..+.
T Consensus 257 ~vydr~~~ 264 (353)
T d1h6la_ 257 AIYERQGQ 264 (353)
T ss_dssp EEEESSTT
T ss_pred EEEecCCC
Confidence 99998764
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.15 E-value=5.6 Score=26.35 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=73.6
Q ss_pred CEEEEEcCCCeEEEEEcCCCeEEEeecCCccceEEEEEeeCC--CEEEEe------cCCCeEEEEEcCCccccceeeecc
Q 028806 8 MKLLGTSGDGTLSVCNLRKNTVQTRSEFSEEELTSVVLMKNG--RKVVCG------SQSGTVLLYSWGYFKDCSDRFVGL 79 (203)
Q Consensus 8 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~------~~d~~i~~wd~~~~~~~~~~~~~~ 79 (203)
++|+.+...|.+.++-+..++.+..-+ .+|.... .|.. .+++.. -.-..+++-++...++.. .+...
T Consensus 27 ~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~-~i~sp 101 (313)
T d2hu7a1 27 KLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV 101 (313)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEECCS---SCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEE-ECTTS
T ss_pred cEEEEEeccceEEEEEEeCCEEEEEec---ccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeee-EecCC
Confidence 467777778999999888776554322 2332221 2221 122211 112234444443222221 12210
Q ss_pred CCCceeEEEeeCCCEEEEEcCCCcEEEEEccCCceeeeeccCCC--------CceEEEE-EeCCCCeEEEEeC-CCcEEE
Q 028806 80 SPNSVDALLKLDEDRVITGSENGLISLVGILPNRIIQPIAEHSE--------YPIESLA-LSHDRKFLGSISH-DSMLKL 149 (203)
Q Consensus 80 ~~~~v~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--------~~i~~i~-~~~~~~~l~~~~~-d~~i~i 149 (203)
..-.+.++...+.+...+|+......+|-++.|+.........- .-|..+. +.++.+-+.++.. .|.++|
T Consensus 102 k~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri 181 (313)
T d2hu7a1 102 KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV 181 (313)
T ss_dssp CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred ceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence 11233333445566777888777788998888875543322210 1233333 3444455666665 888999
Q ss_pred EeCCCcc
Q 028806 150 WDLDDIL 156 (203)
Q Consensus 150 wd~~~~~ 156 (203)
++...+.
T Consensus 182 ~tpkeGS 188 (313)
T d2hu7a1 182 FDSGEGS 188 (313)
T ss_dssp ECCSSEE
T ss_pred ecCCCCc
Confidence 8866553
|