Citrus Sinensis ID: 028824

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVCEKCLSFENYICLGSLSLKFLTFLLIFVNGLKAQNFSCPS
Secondary Structure (PSIPRED)
ccEEccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHccccccccccccccccccccccEEEcccccccccEEEcccccHHHHHHHHHHcccccccEEcccccEEEEEEHHHHHccccccccccccccccccccHHHHHHHHHccccccEEEccEEHHHHHHHHHHHcHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccEccccccHEEEEEccccccccccccccccccEEEEcccccccEEEEEccccccccHcccHHHHccccccccccccccccEEEccccccccccEEEcccccHHHHHHHHHHccccccEEEcccccEEEEEEHHHHHEHHccccccccccccccccccHHHHHHHHHHHccccEEEEcccccHHHEEEEHcccccccccccc
Coil and Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgrtsfalqlpclllsrpgcrvfSVLATSSDRVSALRRSSAvfasgtltansaapssgvytvgdfmttkeelhvvkptttVDEALEILVEKRitgfpvidddwklvglvsdydllaldsisgsgradnsmfpevdsTWKVCEKCLSFENYICLGSLSLKFLTFLLIFVNGlkaqnfscps
Flexible Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVfasgtltansaapssgvYTVGDFMTTKEElhvvkptttvDEALEILVEKritgfpvidddWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVCEKCLSFENYICLGSLSLKFLTFLLIFVNGLkaqnfscps
Low Complexity Region (SEG)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVCEKCLSFENYICLGSLSLKFLTFLLIFVNGLKAQNFSCPS
Disordered region (IsUnstruct)
**************************TSFALQLPCLLLSRPGCRVFSVLATSSDRVSAL****AVFASGTL********SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVCEKCLSFENYICLGSLSLKFLTFLLIFVNGLKAQ******
Disordered Region (DISOPRED)
*******HSIS*******************LQLPCLLLSRPGCR***********************************SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG*GRADNSMFPEVDSTWKVCEKCLSFENYICLGSLSLKFLTFLLIFVNGLKAQNF****
Disordered Region (DISEMBL)
MDSIVLPHSISVARLR*********RTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVCEKCLSFENYICLGSLSLKFLTFLLIFVNGLKAQNFSCPS
Disordered Region (DISPRO)
**SIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS***********VFASG*LT********GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS*R*DNSMFPEVDSTWKVCEKCLSFENYICLGSLSLKFLTFLLIFVNGLKAQNF*C**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVCEKCLSFENYICLGSLSLKFLTFLLIFVNGLKAQNFSCPS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
O23193	236	CBS domain-containing pro	yes	no	0.581	0.5	0.727	7e-44
Q9C5D0	238	CBS domain-containing pro	no	no	0.532	0.453	0.588	6e-33
P42851	485	Inosine-5'-monophosphate	yes	no	0.334	0.140	0.408	4e-05
O58045	486	Inosine-5'-monophosphate	yes	no	0.399	0.166	0.357	6e-05
O67820	490	Inosine-5'-monophosphate	yes	no	0.192	0.079	0.475	0.0001

>sp|O23193|CBSX1_ARATH CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2

 Score =  176 bits (447), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 88/121 (72%), Positives = 99/121 (81%), Gaps = 3/121 (2%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
           S++  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPV
Sbjct: 54  SASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPV 113

Query: 122 IDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKV---CEKCLSFENYICLGS 178
           ID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWK     +K LS  N   +G 
Sbjct: 114 IDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGD 173

Query: 179 L 179
           L
Sbjct: 174 L 174

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5D0|CBSX2_ARATH CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1

 Score =  140 bits (353), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 88/119 (73%), Gaps = 11/119 (9%)

Query: 60  RRSSAVFASGTLTANSAAPSS-----------GVYTVGDFMTTKEELHVVKPTTTVDEAL 108
           RRSS    S T++A  AAP+S           G YTVGDFMT ++ LHVVKP+T+VD+AL
Sbjct: 43  RRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDAL 102

Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVCEKC 167
           E+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDSTWK   + 
Sbjct: 103 ELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNEL 161

Arabidopsis thaliana (taxid: 3702)

>sp|P42851|IMDH_PYRFU Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=guaB PE=3 SV=1

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G +T    A   G  TV + MT   E+  V  +  V+EAL+I++E RI   PV+++D KL
Sbjct: 137 GIITKKDIAAREG-RTVKELMT--REVITVPESVDVEEALKIMMENRIDRLPVVNEDGKL 193

Query: 129 VGLVSDYDLLA 139
           VGL++  DL+A
Sbjct: 194 VGLITMSDLVA 204

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|O58045|IMDH_PYRHO Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=guaB PE=1 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G +T    A   G   V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KL
Sbjct: 137 GIITKKDIAAREG-KLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193

Query: 129 VGLVSDYDLLALDSISGSGRADNS 152
           VGL++  DL+A      + R +N 
Sbjct: 194 VGLITMSDLVARKKYKNAVRDENG 217

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|O67820|IMDH_AQUAE Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=guaB PE=3 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 32/40 (80%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           VKP T V EAL+I+ + +I+G PV+D++ KL+G++++ DL
Sbjct: 103 VKPDTRVKEALDIMAKYKISGVPVVDEERKLIGILTNRDL 142

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
225438783	246	PREDICTED: CBS domain-containing protein	0.881	0.727	0.610	3e-52
317106695	236	JHL03K20.5 [Jatropha curcas]	0.832	0.716	0.641	4e-51
255587643	239	conserved hypothetical protein [Ricinus	0.719	0.610	0.683	5e-46
147802944	288	hypothetical protein VITISV_021555 [Viti	0.881	0.621	0.497	2e-45
224081731	208	predicted protein [Populus trichocarpa]	0.689	0.673	0.640	1e-43
449443418	235	PREDICTED: CBS domain-containing protein	0.724	0.625	0.610	2e-43
449525190	235	PREDICTED: CBS domain-containing protein	0.724	0.625	0.610	3e-43
15234564	236	cystathionine beta-synthase domain-conta	0.581	0.5	0.727	4e-42
357482805	224	Inosine-5'-monophosphate dehydrogenase [	0.586	0.531	0.696	5e-42
356541776	228	PREDICTED: CBS domain-containing protein	0.556	0.495	0.732	7e-42

>gi|225438783|ref|XP_002283079.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Vitis vinifera]

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 135/185 (72%), Gaps = 6/185 (3%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+LP +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILLPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
            +RRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EALEILVE RIT
Sbjct: 61  GIRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRIT 120

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKV---CEKCLSFENYI 174
           GFPVIDDDWKLVGLVSDYDLLALDSISG G  D  MFPEVDSTWK     +K LS  N  
Sbjct: 121 GFPVIDDDWKLVGLVSDYDLLALDSISGGGLTDTIMFPEVDSTWKTFNELQKLLSKTNGK 180

Query: 175 CLGSL 179
            +G L
Sbjct: 181 VVGDL 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106695|dbj|BAJ53196.1| JHL03K20.5 [Jatropha curcas]

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 118/184 (64%), Positives = 130/184 (70%), Gaps = 15/184 (8%)

Query: 1   MDSIVLPH--SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSA 58
           MDSI+      + + RLRA     TS   SFA QLPCLL SRPG R+  + A     +S 
Sbjct: 1   MDSILHQELLHLPITRLRATA---TSPIVSFAQQLPCLLSSRPGRRLLPLSA-----ISH 52

Query: 59  LRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG 118
            RRSSA+ ASG   A+S  P SGVYTVGDFMT KE+L VVKPTTTVDEAL+ LVE RITG
Sbjct: 53  PRRSSAIAASGAFVASS--PKSGVYTVGDFMTRKEDLQVVKPTTTVDEALQTLVEHRITG 110

Query: 119 FPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKV---CEKCLSFENYIC 175
           FPVIDDDWKLVGLVSDYDLLALDSISG GR DNSMFPEVDSTWK     +K LS  N   
Sbjct: 111 FPVIDDDWKLVGLVSDYDLLALDSISGGGRTDNSMFPEVDSTWKTFNEVQKLLSKTNGKL 170

Query: 176 LGSL 179
           +G L
Sbjct: 171 VGDL 174

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587643|ref|XP_002534340.1| conserved hypothetical protein [Ricinus communis] gi|223525462|gb|EEF28042.1| conserved hypothetical protein [Ricinus communis]

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 114/155 (73%), Gaps = 9/155 (5%)

Query: 28  SFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD 87
           SFA QLPCLL S    R    L+     +S  RRSS + A+GTL ANS  P SGVYTVGD
Sbjct: 29  SFAHQLPCLLSSATVSRRLFHLSV----ISWPRRSSTISATGTLMANS--PKSGVYTVGD 82

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG 147
           FMT KE+L VVKPTTTVDEAL+ LVE RITGFPVIDDDWKLVGLVSDYDLLALDSISG G
Sbjct: 83  FMTRKEDLCVVKPTTTVDEALQTLVEHRITGFPVIDDDWKLVGLVSDYDLLALDSISGGG 142

Query: 148 RADNSMFPEVDSTWKV---CEKCLSFENYICLGSL 179
           R DNSMFPEVDSTWK     +K LS  N   +G L
Sbjct: 143 RTDNSMFPEVDSTWKTFNEVQKLLSKTNGKLVGDL 177

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802944|emb|CAN64036.1| hypothetical protein VITISV_021555 [Vitis vinifera]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/227 (49%), Positives = 134/227 (59%), Gaps = 48/227 (21%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+ P +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILPPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
            LRRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EALEILVE RIT
Sbjct: 61  GLRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRIT 120

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSI---------------------------------- 143
           GFPVIDDDWKLVGLVSDYDLLALDSI                                  
Sbjct: 121 GFPVIDDDWKLVGLVSDYDLLALDSISELPQLKHVPEDISGKSLVLHGSLERQMKSLFLT 180

Query: 144 --------SGSGRADNSMFPEVDSTWKV---CEKCLSFENYICLGSL 179
                   SG G  D  MFPEVDSTWK     +K LS  N   +G L
Sbjct: 181 AVDVLIFGSGGGLTDTIMFPEVDSTWKTFNELQKLLSKTNGKVVGDL 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081731|ref|XP_002306482.1| predicted protein [Populus trichocarpa] gi|222855931|gb|EEE93478.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/153 (64%), Positives = 114/153 (74%), Gaps = 13/153 (8%)

Query: 33  LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFA---SGTLTANSAAPSSGVYTVGDFM 89
           +PCLL S PG ++ S+ +     +S  RRS ++ A   SGTL ANS  P SGVYTVGDFM
Sbjct: 1   MPCLLFSTPGRKLVSLSS-----ISWPRRSPSLIAAASSGTLMANS--PKSGVYTVGDFM 53

Query: 90  TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA 149
           T KE+LHVVKPTTTV+EALE LVE+RITGFPVIDDDWKLVGLVSDYDLLALDSISG GR 
Sbjct: 54  TRKEDLHVVKPTTTVNEALETLVERRITGFPVIDDDWKLVGLVSDYDLLALDSISGGGRT 113

Query: 150 DNSMFPEVDSTWKV---CEKCLSFENYICLGSL 179
           + +MFPEVDSTWK     +  L+  N   +G L
Sbjct: 114 ETNMFPEVDSTWKTFNEVQMLLNKTNGKVVGDL 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443418|ref|XP_004139474.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 114/159 (71%), Gaps = 12/159 (7%)

Query: 28  SFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVY 83
           SF++Q     PC    RP   +    A+ +     LR+S+++ ASGTL ANS    +GVY
Sbjct: 20  SFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTSIAASGTLMANSVPSGTGVY 74

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            VGDFMT KEELHVVKPTT+VDEALEILVEKRITGFPVIDD+WKLVG+VSDYDLLALDSI
Sbjct: 75  IVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNWKLVGVVSDYDLLALDSI 134

Query: 144 SGSGRADNSMFPEVDSTWKV---CEKCLSFENYICLGSL 179
           SG GR D SMFPEVDS+WK     ++ LS  N   +G L
Sbjct: 135 SGGGRTDTSMFPEVDSSWKTFNEVQRLLSKTNGKVVGDL 173

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525190|ref|XP_004169601.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 114/159 (71%), Gaps = 12/159 (7%)

Query: 28  SFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVY 83
           SF++Q     PC    RP   +    A+ +     LR+S+++ ASGTL ANS    +GVY
Sbjct: 20  SFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTSIAASGTLMANSLPSGTGVY 74

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            VGDFMT KEELHVVKPTT+VDEALEILVEKRITGFPVIDD+WKLVG+VSDYDLLALDSI
Sbjct: 75  IVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNWKLVGVVSDYDLLALDSI 134

Query: 144 SGSGRADNSMFPEVDSTWKV---CEKCLSFENYICLGSL 179
           SG GR D SMFPEVDS+WK     ++ LS  N   +G L
Sbjct: 135 SGGGRTDTSMFPEVDSSWKTFNEVQRLLSKTNGKVVGDL 173

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234564|ref|NP_195409.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana] gi|75219197|sp|O23193.2|CBSX1_ARATH RecName: Full=CBS domain-containing protein CBSX1, chloroplastic; AltName: Full=CBS domain-containing protein 2; Short=AtCDCP2; AltName: Full=Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2; Short=AtLEJ2; Flags: Precursor gi|4006881|emb|CAB16799.1| putative protein [Arabidopsis thaliana] gi|7270640|emb|CAB80357.1| putative protein [Arabidopsis thaliana] gi|21537376|gb|AAM61717.1| unknown [Arabidopsis thaliana] gi|28392900|gb|AAO41886.1| unknown protein [Arabidopsis thaliana] gi|28827758|gb|AAO50723.1| unknown protein [Arabidopsis thaliana] gi|332661316|gb|AEE86716.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana]

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 88/121 (72%), Positives = 99/121 (81%), Gaps = 3/121 (2%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
           S++  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPV
Sbjct: 54  SASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPV 113

Query: 122 IDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKV---CEKCLSFENYICLGS 178
           ID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWK     +K LS  N   +G 
Sbjct: 114 IDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGD 173

Query: 179 L 179
           L
Sbjct: 174 L 174

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482805|ref|XP_003611689.1| Inosine-5'-monophosphate dehydrogenase [Medicago truncatula] gi|355513024|gb|AES94647.1| Inosine-5'-monophosphate dehydrogenase [Medicago truncatula]

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/122 (69%), Positives = 98/122 (80%), Gaps = 3/122 (2%)

Query: 61  RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120
           R S +FA+ TLTANS  P +GVYTVGDFMT K+ELH VKPTTTVDEAL+ LVE RITGFP
Sbjct: 41  RGSPLFAANTLTANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHRITGFP 100

Query: 121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKV---CEKCLSFENYICLG 177
           VIDD+WKLVG+VSDYDLLALDSISG G+ DNS+FP+VDSTWK     ++ LS  N   +G
Sbjct: 101 VIDDNWKLVGVVSDYDLLALDSISGQGQTDNSLFPDVDSTWKTFNEVQRLLSKTNGKVIG 160

Query: 178 SL 179
            L
Sbjct: 161 EL 162

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541776|ref|XP_003539349.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Glycine max] gi|255632210|gb|ACU16463.1| unknown [Glycine max]

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 95/116 (81%), Gaps = 3/116 (2%)

Query: 67  ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           A+ TLTAN  +P SG+YTVGDFMT KE+LHVVKPTT+VDEALEILVE RITGFPVIDD+W
Sbjct: 51  AANTLTANDVSPRSGLYTVGDFMTKKEDLHVVKPTTSVDEALEILVENRITGFPVIDDNW 110

Query: 127 KLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKV---CEKCLSFENYICLGSL 179
           KLVG+VSDYDLLALDSISG G  DN+MFPEVDSTWK     +K LS  N   +G L
Sbjct: 111 KLVGVVSDYDLLALDSISGHGLKDNNMFPEVDSTWKTFNEVQKLLSKTNGKLIGEL 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2114970	236	LEJ2 "AT4G36910" [Arabidopsis	0.842	0.724	0.576	5.7e-43
TAIR|locus:2124276	238	LEJ1 "AT4G34120" [Arabidopsis	0.576	0.491	0.577	1.6e-31
UNIPROTKB|Q3AFN9	210	acuB "Acetoin utilization prot	0.246	0.238	0.547	0.0005
TIGR_CMR|CHY_0173	210	CHY_0173 "acetoin utilization	0.246	0.238	0.547	0.0005
TIGR_CMR|CJE_1201	485	CJE_1201 "inosine-5'-monophosp	0.197	0.082	0.525	0.00066

TAIR|locus:2114970 LEJ2 "AT4G36910" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 105/182 (57%), Positives = 124/182 (68%)

Query:     1 MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALR 60
             MD+++    +S   LRA     +S  +S  L LP  L  +P C  F+   +   +     
Sbjct:     1 MDAVLYSVPLSFTPLRA-----SSSPSSPYLLLPRFLSVQP-CHKFTFSRSFPSKSRIPS 54

Query:    61 RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120
              SSA  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFP
Sbjct:    55 ASSA--AGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFP 112

Query:   121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKV---CEKCLSFENYICLG 177
             VID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWK     +K LS  N   +G
Sbjct:   113 VIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVG 172

Query:   178 SL 179
              L
Sbjct:   173 DL 174

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

TAIR|locus:2124276 LEJ1 "AT4G34120" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 71/123 (57%), Positives = 95/123 (77%)

Query:    46 FSVLATSSDRVSALRRSS----AVFAS-GTLTANSAAPS-SGVYTVGDFMTTKEELHVVK 99
             FS+L  S+ R S+    S    A FA+  ++  N++ P+ +G YTVGDFMT ++ LHVVK
Sbjct:    34 FSLLPLSNRRRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVK 93

Query:   100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159
             P+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDS
Sbjct:    94 PSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS 153

Query:   160 TWK 162
             TWK
Sbjct:   154 TWK 156

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|Q3AFN9 acuB "Acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 106 (42.4 bits), Expect = 0.00050, P = 0.00050
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V D MT   EL  VK T T+ EA+    EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMT--RELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CHY_0173 CHY_0173 "acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 106 (42.4 bits), Expect = 0.00050, P = 0.00050
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V D MT   EL  VK T T+ EA+    EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMT--RELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CJE_1201 CJE_1201 "inosine-5'-monophosphate dehydrogenase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 111 (44.1 bits), Expect = 0.00066, P = 0.00066
 Identities = 21/40 (52%), Positives = 31/40 (77%)

Query:    98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V P  +V EALEI+ E RI+G PV+D+D KL+G++++ DL
Sbjct:    99 VSPKASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDL 138


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      203       203   0.00092  111 3  11 22  0.46    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  159 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.72u 0.22s 19.94t   Elapsed:  00:00:01
  Total cpu time:  19.72u 0.22s 19.94t   Elapsed:  00:00:01
  Start:  Thu May  9 16:12:11 2013   End:  Thu May  9 16:12:12 2013

GO:0003938 "IMP dehydrogenase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23193	CBSX1_ARATH	No assigned EC number	0.7272	0.5812	0.5	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019540001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (213 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023053001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (430 aa)	•						•		0.707
	GSVIVG00036526001	RecName- Full=N-acetyl-gamma-glutamyl-phosphate reductase; EC=1.2.1.38; (398 aa)	•								0.556
	GSVIVG00000640001	RecName- Full=DNA topoisomerase 2; EC=5.99.1.3; (661 aa)	•								0.553
	GSVIVG00025551001	RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)							•		0.474

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
pfam00571	57	pfam00571, CBS, CBS domain	3e-14
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-11
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	3e-11
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-10
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-10
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	8e-10
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	9e-10
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	1e-09
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-09
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	2e-09
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	2e-09
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	7e-09
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	8e-09
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	9e-09
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	1e-08
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	2e-08
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	2e-08
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	3e-08
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	4e-08
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	4e-08
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	7e-08
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	1e-07
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-07
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	1e-07
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	2e-07
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	2e-07
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	4e-07
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	4e-07
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	8e-07
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	8e-07
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	1e-06
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	1e-06
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	1e-06
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	1e-06
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	1e-06
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	2e-06
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	2e-06
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	2e-06
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	3e-06
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	5e-06
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	6e-06
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	6e-06
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	9e-06
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	1e-05
cd04614	96	cd04614, CBS_pair_1, The CBS domain, named after h	1e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	1e-05
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	2e-05
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	2e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	2e-05
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	2e-05
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	3e-05
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	3e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	3e-05
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	4e-05
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	4e-05
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	4e-05
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	4e-05
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	5e-05
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	6e-05
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	8e-05
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	9e-05
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	1e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	1e-04
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	1e-04
cd04598	119	cd04598, CBS_pair_GGDEF_assoc, This cd contains tw	1e-04
cd04608	124	cd04608, CBS_pair_PALP_assoc, This cd contains two	1e-04
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	1e-04
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	1e-04
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	2e-04
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	3e-04
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	3e-04
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	4e-04
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	6e-04
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	6e-04
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	7e-04
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	7e-04
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	7e-04
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	8e-04
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.001
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	0.001
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	0.001
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	0.001
PRK11543	321	PRK11543, gutQ, D-arabinose 5-phosphate isomerase;	0.001
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	0.001
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	0.002
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	0.002
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	0.002
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	0.002
cd04597	113	cd04597, CBS_pair_DRTGG_assoc2, This cd contains t	0.002
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	0.003
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	0.003
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	0.003
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	0.003
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	0.004

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 64.1 bits (157), Expect = 3e-14
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT    +  V P T+++EALE++ E  I+  PV+D+D KLVG+V+  DLL
Sbjct: 1   VKDIMTPD--VVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLL 52

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT   ++  VKP T+V +AL ++ E  ++  PV+DD  KLVG++++ D+L
Sbjct: 1   VKDIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDIL 51

Length = 117

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V   MT    +  + P  ++ +A E+++EKR+ G PV+DDD KLVG+V++ DLL
Sbjct: 72  VRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVGD MT   ++  V P T+++EA E+++E  I   PV+DD+ +LVG+V+  D+L
Sbjct: 59  TVGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 22/46 (47%), Positives = 33/46 (71%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            ++  V P  TV EAL +++E  I+G PV+DDD +LVG+V++ DLL
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 53.6 bits (130), Expect = 8e-10
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           V P  TV EALE++ E  I+G PV+DDD KLVG+V++ DL
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDL 46

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 54.1 bits (131), Expect = 9e-10
 Identities = 21/42 (50%), Positives = 31/42 (73%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V P T+V EA  ++++  I+G PV+DDD +LVG+VS+ DLL
Sbjct: 6   TVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLL 47

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 53.6 bits (130), Expect = 1e-09
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V + MT  E L      T+++EALE+L E +I   PV+DD+ KL GL+
Sbjct: 55  PVSEVMT-PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLI 102

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V + MT KE L  V   TT++EALE+L E RI   PV+DD+ +L GL+
Sbjct: 148 PVSEVMT-KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195

Length = 486

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 51.0 bits (123), Expect = 2e-09
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V P TT++EALE+L E  I   PV+D++ +LVG+V+  D++
Sbjct: 4   TVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 95  LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL--ALDSI---SGSGRA 149
                P  +V EA+E L++ +I+G PV+DD+  LVG +S+ D L   L+S     G    
Sbjct: 3   PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATV 62

Query: 150 DNSMFPEVDS 159
            + M  EV +
Sbjct: 63  RDIMTTEVLT 72

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 51.3 bits (124), Expect = 7e-09
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V D MT       + P     EALE++ E +IT  PV+DD+ + VG++  +DLL 
Sbjct: 60  PVADVMTRNP--KTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 20/41 (48%), Positives = 31/41 (75%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + PTTT+ EALE++ E +I   PV+D++ +LVG+V+D DL 
Sbjct: 6   ITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR 46

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D+M+T  ++  V P T + E  E++VE  I G   + +D +LVG+V+  DLL
Sbjct: 58  VKDYMST--DVVTVPPDTPLSEVQELMVEHDI-GRVPVVEDGRLVGIVTRTDLL 108

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT       V P  +V+EA E+++E++I+G PV+DD  +LVG++++ DL 
Sbjct: 68  KVSDIMTRD--PITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVID 123
           +     +    AA    +  V + MT    +  V P T ++EALE++VE  +I   PV+D
Sbjct: 44  IITERDILRALAAGGKRLLPVKEVMTKP--VVTVDPDTPLEEALELMVERHKIRRLPVVD 101

Query: 124 DD-WKLVGLVSDYDLL 138
           DD  KLVG+++  D+L
Sbjct: 102 DDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 17/42 (40%), Positives = 31/42 (73%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            VK   T+ + +EIL+  +I+G PV+D++ ++VG+VS+ DL+
Sbjct: 5   TVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           V + MT +EE+  V     ++EAL++L E RI   PV+D + +LVGL++  D++ 
Sbjct: 145 VSEVMT-REEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVK 198

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
              +  S      S         V + MT K  +  V   TT+++   I+ +K I   PV
Sbjct: 57  YVTLLYSVIFLDESKIKKLLGKKVEEIMTKK--VITVDEDTTIEDVARIMSKKNIKRLPV 114

Query: 122 IDDDWKLVGLVSDYDLL 138
           +DD  KLVG++S  D++
Sbjct: 115 VDDG-KLVGIISRGDII 130

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.4 bits (119), Expect = 4e-08
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            V + MT    +  V P  TVDEA+ ++ E+R    PV+D   KLVG+VS
Sbjct: 60  PVSEIMTRN--VITVTPDDTVDEAMALMTERRFRHLPVVDGG-KLVGIVS 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 53  SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILV 112
           +DR   LR +S      T  +           V + MT   ++  V P  TV+EA  ++ 
Sbjct: 41  TDR--DLRDASPSPF--TTLSEHELYLLLKMPVKEIMTK--DVITVHPLDTVEEAALLMR 94

Query: 113 EKRITGFPVIDDDWKLVGLVSDYDLL 138
           E RI   PV++D  +LVG++++ DLL
Sbjct: 95  EHRIGCLPVVEDG-RLVGIITETDLL 119

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 17/40 (42%), Positives = 29/40 (72%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           V P TT+ EAL ++    I+G PV+D++ KLVG++++ D+
Sbjct: 100 VTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDV 139

Length = 486

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVGD MT    +  V     VDEA  ++ E ++   PV+DDD +LVG+VS  DL 
Sbjct: 59  TVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            +  +    ++ +A E++ E RI   PV+++D KLVGL++  DLL 
Sbjct: 2   PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLR 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           V   MTT E+L        +++  E++++ R   +PV+D+D K+VG++S Y LL+
Sbjct: 248 VSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301

Length = 546

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   MT  E+L       T++EA EIL E +I   P++DDD +LVGL++  D+ 
Sbjct: 142 KVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIE 196

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT    +  ++P T+V +   +++E  I G PV+DD  KLVG+V+  D+L
Sbjct: 69  VSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDG-KLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYD 136
           V DFMT  E+L      TT+ EA +I+ + ++   P++D +  LV LV   DYD
Sbjct: 163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYD 216

Length = 502

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + MT +E L V     T++EA EIL E +    P+++DD +LV LV+  DL 
Sbjct: 58  PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 14/44 (31%), Positives = 31/44 (70%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
             +P T + + L++LVE+R++  P++D++ K+V + S +D++ L
Sbjct: 5   TARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V D MT    +  V   T + E  E++ E RI   PV+    +LVG+VS  DLL 
Sbjct: 82  KVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGG-RLVGIVSRADLLR 134

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + M T   +  V P T + EA EI+VE +I   PV+DD   LVG+++  D L
Sbjct: 68  PVAEVMKTD--VLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
           TV D MT  E+   ++ T TV++ L+++ +   + FPV++   K+VG+V+  D+L    S
Sbjct: 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPS 248

Query: 143 IS 144
            +
Sbjct: 249 TT 250

Length = 432

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            V + M+ K  L  V+P  T+ EA ++  EK I G PV+DDD K+VG+++  D+   
Sbjct: 173 KVKNLMSKK--LITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKA 226

Length = 294

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               MT       V P T VDEA ++L+E  I+  PV+D++ +L+G+++  DLL
Sbjct: 69  AHQIMTRD--PITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
            V + MT +E+L V     +++EA E+L E R    P+++D+ +LV LVS  DL    
Sbjct: 160 PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217

Length = 495

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
                 T+ +A  +L E +I+G PV+D   KLVG+VS+ D+L L
Sbjct: 5   TCNADDTISDAARLLRENKISGAPVLDGG-KLVGIVSESDILKL 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            VG+ M+T   L  + P  +++EA +++ +  I   PV+DDD +LVG+V+  D++
Sbjct: 59  PVGEVMSTP--LITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 13/41 (31%), Positives = 28/41 (68%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            +    ++ EA ++++E+ I   PV+D+D +LVG+V+ +D+
Sbjct: 6   TISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDI 46

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 150
           ++  V    TVDE L ++  +R  G+PV+DD  +LVG+V    L  +  +   GR  
Sbjct: 2   DVVTVPVDLTVDEVLALMFGERHRGYPVVDDG-RLVGIV---TLADIRRVPAEGREA 54

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           EE+  V+ T T+  AL +L +   +  PV+D + K VG +S  D+L
Sbjct: 1   EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 48  VLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107
             A   D    L + S                       D MT  EE+  V P   V +A
Sbjct: 46  AFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPLVAEDIMT--EEIITVSPNDDVVDA 103

Query: 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            ++++E  I+G PV+D+D  +VG+++  D+   
Sbjct: 104 AKLMLEANISGLPVVDND-NIVGVITKTDICRE 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            ++  V P  TV +A+E + E  ++  PV+DD  ++VG + + DLL
Sbjct: 1   GDVVSVAPDDTVSQAIERMREYGVSQLPVVDDG-RVVGSIDESDLL 45

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT  +++  + P  ++++A E++V  +I   PV++D  +LVG+V+  D++
Sbjct: 91  VRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDG-RLVGIVTRGDII 141

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239987 cd04614, CBS_pair_1, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           SG+ T  D +  K E+      TTV E  + +   RI   P+I+ + KL+GL+ D+DLL
Sbjct: 37  SGIITERDLIA-KSEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 96

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 15/36 (41%), Positives = 25/36 (69%)

Query: 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T D+ LE+L E +++G PV+    +LVG+++  DLL
Sbjct: 11  TRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 93  EELHVVKPTTTVDEALEILVEKR--ITGFPVIDDDWKLVGLVSDYDL 137
           + L +V P T++ +AL  +  K   +T   V+D+D +LVG+ +D DL
Sbjct: 2   DALPLVSPDTSLKDALLEMSRKGLGMTA--VVDEDGRLVGIFTDGDL 46

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           ++  V+P  TV EA +++ EK I    V+DD  +LVG+ S+ D++
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIV 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V P   V EA +++VE  I   PV+DD  KLVG+V+  D++ 
Sbjct: 64  TVSPDDDVKEAAKLMVENNIRRVPVVDDG-KLVGIVTVADIVR 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           ++  V P T+++EA  +L   RI   PV+D D +LVG+V+  DLL 
Sbjct: 3   DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLR 48

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           TVGD M+    +  V+P T + E + +L +      PV+D+D +LVG+V+  DL+A
Sbjct: 70  TVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           TV   MT   +L  V    ++ E L++L E+ +    V++D  +++GL+++ DLL  
Sbjct: 58  TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLRR 114

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           + L  + P  T+ EA  +     I G PV+DD  KLVG+V+  D+   
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDG-KLVGIVTLSDIAHA 47

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 70  TLTANSAAPSSGVYT---VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           TL      P+ G      VGD MT         P  T+ +AL+ + E+ I   PV+DD  
Sbjct: 40  TLADIRRVPAEGREATVLVGDVMTRD--PVTASPDETLRDALKRMAERDIGRLPVVDDSG 97

Query: 127 KLVGLVSDYDLL 138
           +LVG+VS  DLL
Sbjct: 98  RLVGIVSRSDLL 109

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            ++ D M   E++  V+P  ++ + L +++++     PV+D+D KLVGL++
Sbjct: 54  KSLEDIM--LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLIT 102

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TV   M+T   ++ V P  ++  A+E+++E  I   PV+++  +LVG+V  +D+L
Sbjct: 68  TVEKIMSTP--VYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            V   MT           T V EAL ++V+ +    PV+D   ++VGL+ 
Sbjct: 59  LVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLD 106

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            V P T++ EAL+++ E  I   PV+D   KLVG+V+D DL
Sbjct: 5   TVTPDTSLMEALKLMKENSIRRLPVVDRG-KLVGIVTDRDL 44

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            V D     ++   V P T++ EA  ++ E  +   PV+D++ KL+GLVS  DL
Sbjct: 69  QVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDL 120

Length = 546

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            VG+ M++   L  V   T++ +A +++ E  I    V+DDD +L+GL+S  DLL 
Sbjct: 57  PVGEVMSSP--LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 75  SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK----RITGFPVIDDDWKLVG 130
           S A +    +V D MT      V+  T T DE +++   K     I+  PV+D + +++G
Sbjct: 47  SKAVARDKKSVEDIMTRN----VI--TATPDEPIDVAARKMERHNISALPVVDAENRVIG 100

Query: 131 LVSDYDLLAL 140
           +++  D+  L
Sbjct: 101 IITSEDISKL 110

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            +   T ++E L+++       FPV+DDD +LVG+VS  D+  +
Sbjct: 5   TIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI 48

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLA 139
              D MT      VV P  ++++AL+   +      PV+DDD  KL+G++S  DLL+
Sbjct: 59  VASDIMTKPPV--VVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
             V P  TV + ++++ E    GFPV+D+  K+VG+VS  DLL  D
Sbjct: 5   ITVSPDNTVKDVIKLIKETGHDGFPVVDNG-KVVGIVSARDLLGKD 49

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239971 cd04598, CBS_pair_GGDEF_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 93  EELHVVKPTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYDLLAL 140
                V P TTV++ LE       ++   V+DD  + VGL+    L+ L
Sbjct: 1   RPAPTVSPDTTVNDVLERFERDPDLSALAVVDDG-RPVGLIMREALMEL 48

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 119

>gnl|CDD|239981 cd04608, CBS_pair_PALP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V PT T  EA+EIL EK     PV+D+  K++G+V+  +LL+  S+S SG+   S  P  
Sbjct: 7   VLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLS--SLS-SGKVQPSD-PVS 62

Query: 158 DSTWKVCEKCLSFENYICLGSLSLKFLTFLLIF 190
            + +K  ++    +    L S  L+   FLL+F
Sbjct: 63  KALYKQFKRVNKNDTLGKL-SRILETDAFLLVF 94

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 91  TKEELHV-----VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 145
           T ++LH+     V PT TV +A+EIL E      PV+ +  K++G V+  +LL+      
Sbjct: 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK 395

Query: 146 SGRAD------NSMFPEVDSTWKVCEKCLSFEN 172
           +   D      +  F ++    K+ +     E 
Sbjct: 396 ANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEK 428

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +++  V    T+DEAL+I+ EK+I   PV+DD+ KL+G+V   D+L
Sbjct: 64  SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDDN-KLIGVVRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V P T++ EA +++ E+ +    V+D D + +G+V++ D++ 
Sbjct: 5   TVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVR 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 81  GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           GV TV D MTT  E+  V P  ++ +  +++++ +   +PV+DD  KLVG +S  D+L 
Sbjct: 58  GVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDG-KLVGQISRRDVLR 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVS--DYDLL 138
            V+ P  TV + LEI  +K  +G PV +D     KL+G+V+  D D L
Sbjct: 5   SVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL 52

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
           V+  TT + EA E L+E +     V+D D  +VG+++  DLL AL++
Sbjct: 5   VLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEA 51

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLL 138
            + P TTV + LE++  K I+G PV++D     KLVG+++  D+ 
Sbjct: 92  TISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR 136

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            V + M     L  V P   ++E  E+L    +    V+D+  K VG+++  DLL  
Sbjct: 58  PVREVMGEP--LPTVDPDAPIEELSELLDRGNVA--VVVDEGGKFVGIITRADLLKY 110

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 37.5 bits (88), Expect = 7e-04
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 97  VVKPTTTVDEALEIL-----VEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V+   TV EALE L       + I    V+D++ +L+G+VS  DLL
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL 47

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALD 141
           TV + MT + ++  +  T TV+E +E+++E   +  PV D D   ++G+V   DLL   
Sbjct: 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRAL 265

Length = 429

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V DFMT   +    K    + EALE L  ++IT   V+DD  K++G++
Sbjct: 221 EVRDFMTLGPK--TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           ++  +     V +A +++ +  I+G PV+D+  KL+G +S  DL
Sbjct: 2   KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDL 45

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLA 139
            V PTT + EA +I+V       PV+D+   KLVG+++  D+L 
Sbjct: 5   TVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILK 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V+P  T++EA E+L+    T  PV++   ++VG++S  D+
Sbjct: 5   KTVRPEATIEEARELLLRYGHTALPVVEGG-RVVGIISRRDV 45

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V   T++D A ++L E RI   PV+D+  +LVG+V+  DLL
Sbjct: 258 VSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLL 298

Length = 382

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           E+   +  T TV +  E+  E   + FPV+D+  K+VG+V+  D+ 
Sbjct: 2   EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA 47

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 15/72 (20%)

Query: 81  GVYTVGDF---------MTTKEELHVVKPTTT------VDEALEILVEKRITGFPVIDDD 125
           GV+T GD          +TT     + +  TT        +A EIL++++IT  PV+D++
Sbjct: 244 GVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDEN 303

Query: 126 WKLVGLVSDYDL 137
            KL G ++  D 
Sbjct: 304 GKLTGAINLQDF 315

Length = 321

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            V + MT       + P  TV EAL +++E+ I   PV+DD  +LVG++S  DLL L
Sbjct: 58  PVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDDG-RLVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD 136
           + +  V P   V  A  ++++  I+  PVI+   KLVG+V++ D
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGG-KLVGIVTEKD 43

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSIS 144
           V+ P  TV + LEI  +K  +   +  D     KL+G+V+  D+  +   S
Sbjct: 108 VLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKS 158

Length = 495

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
             V   T +  A+  +        PV+DD  +LVG+++ YD+L+
Sbjct: 4   SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLS 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 13/53 (24%), Positives = 30/53 (56%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + + MT+ ++L        ++EA  +L + +    P++++D +LV LV+  D+
Sbjct: 165 LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDV 217

Length = 505

>gnl|CDD|239970 cd04597, CBS_pair_DRTGG_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           +P   + EAL ++ E  I   PV+DDD    G+++  DL
Sbjct: 72  RPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDL 110

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 18/38 (47%), Positives = 21/38 (55%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
             V P TTV EALE+     I+G PV +D   L GLV 
Sbjct: 93  VTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVG 130

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TV + M+  ++L V  P   + +A  ++    I+  PV+D++  LVG++++ D++
Sbjct: 53  TVEEIMS--KDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI 105

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           TV   MTT   +  V+P T   E +  L ++ +   PV+D   KLVG+VS  DL+A
Sbjct: 316 TVKGIMTTP--VVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIA 369

Length = 382

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
           T G  MTT  E   +    TVDEAL+ + E+      I    V+D+  KL+G+VS  DLL
Sbjct: 133 TAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL 190

Length = 451

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            +   + P  +V  A  ++ + RI G PV++D  KLVG+++  D+
Sbjct: 1   RDPITIDPLDSVGRAARLMEKHRIGGLPVVEDG-KLVGIITSRDV 44

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
COG2524	294	Predicted transcriptional regulator, contains C-te	99.42
COG3620	187	Predicted transcriptional regulator with C-termina	99.41
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.3
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.25
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.24
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.21
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.2
COG4109	432	Predicted transcriptional regulator containing CBS	99.15
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.11
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.1
PRK11573	413	hypothetical protein; Provisional	99.09
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.08
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.06
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.05
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.01
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.01
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.0
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.99
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.97
COG2905	610	Predicted signal-transduction protein containing c	98.95
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.95
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.94
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.94
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.94
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.92
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.91
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.91
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.9
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.88
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.88
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.87
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.87
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.87
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.86
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.86
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.85
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.84
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.84
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.84
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.83
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.83
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.83
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.83
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.83
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.83
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.81
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.81
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.81
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.8
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.8
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.8
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.79
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.78
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.78
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.78
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.77
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.77
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.76
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.76
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.76
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.76
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.76
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.75
COG2524	294	Predicted transcriptional regulator, contains C-te	98.74
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.74
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.74
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.73
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.72
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.72
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.71
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.71
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.71
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.71
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.7
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.7
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.7
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.7
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.69
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.68
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.68
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.67
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.67
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.66
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.66
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.66
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.65
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.65
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.64
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.64
COG0517	117	FOG: CBS domain [General function prediction only]	98.64
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.64
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.63
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.63
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.62
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.61
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.61
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.61
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.6
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.59
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.59
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.58
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.58
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.57
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.57
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.57
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.56
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.55
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.55
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.55
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.55
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.54
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.52
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.52
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.51
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.51
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.5
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.5
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.5
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.5
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.5
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.5
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.49
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.49
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.48
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.48
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.47
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.47
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.47
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.47
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.46
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.46
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.45
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.44
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.44
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.44
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.43
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.42
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.42
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.42
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.42
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.41
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.41
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.41
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.4
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.38
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.37
COG0517	117	FOG: CBS domain [General function prediction only]	98.37
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.36
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.36
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.36
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.33
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.33
COG4109	432	Predicted transcriptional regulator containing CBS	98.32
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.32
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.32
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.31
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.3
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.3
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.3
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.28
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.28
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.24
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.22
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.21
COG2905	610	Predicted signal-transduction protein containing c	98.21
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.2
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.19
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.17
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.16
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.15
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.13
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.07
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.05
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.0
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.98
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.96
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	97.95
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.92
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.86
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.64
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.54
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.51
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.5
COG3620	187	Predicted transcriptional regulator with C-termina	97.49
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.41
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.39
PRK11573	413	hypothetical protein; Provisional	97.1
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.07
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.07
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	96.73
COG1253	429	TlyC Hemolysins and related proteins containing CB	96.38
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	96.37
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	96.28
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	95.76
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	95.6
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.06
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	94.78
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	93.68
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	93.29
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	92.08
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	91.95
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	91.36
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	89.44
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	85.18

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.42  E-value=3.1e-13  Score=113.96  Aligned_cols=109  Identities=24%  Similarity=0.280  Sum_probs=89.0

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh-cCCCccccCccCC
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-SGSGRADNSMFPE  156 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~-~~~~~v~~~m~~~  156 (203)
                      ......+|.++|++  +++++.+++|+.||+++|.++++++.||+|+ ++++|++|..|+..+... .....++++|.++
T Consensus       167 ~siPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~~~kV~~~M~k~  243 (294)
T COG2524         167 VSIPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNLDAKVSDYMRKN  243 (294)
T ss_pred             eecCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCccccHHHHhccC
Confidence            34567799999999  9999999999999999999999999999996 499999999999987554 3455899999998


Q ss_pred             ccch---------HHHH-----hhhceee-CCcEEEEEehhhHHHHHH
Q 028824          157 VDST---------WKVC-----EKCLSFE-NYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       157 v~~~---------~~~~-----~~llv~~-~g~lvGiVt~~DI~~~L~  189 (203)
                      +.+.         ...+     .++++.+ +|+++|+||++|+++.+.
T Consensus       244 vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         244 VITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             CceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence            7532         1112     4455554 999999999999966554

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.41  E-value=4.2e-13  Score=105.99  Aligned_cols=106  Identities=21%  Similarity=0.267  Sum_probs=85.3

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc----CCCccccCccCC
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----GSGRADNSMFPE  156 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~----~~~~v~~~m~~~  156 (203)
                      ..+++..+|+.  +++++.+++++.+++++|.+++++.+||+++ |+++|-||+.+|.++....    ....+.++|...
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~  139 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVMGEP  139 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCC
Confidence            56788999999  9999999999999999999999999999986 9999999999999875332    334567777665


Q ss_pred             ccc-----hHH-------HHhhhceeeCCcEEEEEehhhHHHHHH
Q 028824          157 VDS-----TWK-------VCEKCLSFENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       157 v~~-----~~~-------~~~~llv~~~g~lvGiVt~~DI~~~L~  189 (203)
                      +..     ..+       ....+++.++|+++|+||+.||+..+.
T Consensus       140 fP~Vs~~~~l~vI~~LL~~~~AVlV~e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         140 FPTVSPDESLNVISQLLEEHPAVLVVENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             CCcCCCCCCHHHHHHHHhhCCeEEEEeCCceEEEEeHHHHHHHHh
Confidence            432     122       224567779999999999999965554

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.30  E-value=3.2e-12  Score=109.87  Aligned_cols=112  Identities=25%  Similarity=0.272  Sum_probs=88.1

Q ss_pred             cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh--------cCCCc
Q 028824           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--------SGSGR  148 (203)
Q Consensus        77 ~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~--------~~~~~  148 (203)
                      +....+++..|||++  +++++.+++++.+|.+.|.+++++.+||+|++.+++|+||.+|+++....        -....
T Consensus       239 ~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~  316 (382)
T COG3448         239 RRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPT  316 (382)
T ss_pred             HHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCc
Confidence            455678899999999  99999999999999999999999999999999999999999999973211        13456


Q ss_pred             cccCccCCccch------HHH---H-----hhhc-eeeCCcEEEEEehhhHHHHHHH
Q 028824          149 ADNSMFPEVDST------WKV---C-----EKCL-SFENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       149 v~~~m~~~v~~~------~~~---~-----~~ll-v~~~g~lvGiVt~~DI~~~L~a  190 (203)
                      ++.+|.+.+.+.      .+.   +     ..++ ++++|+++|+|+.+|++..+..
T Consensus       317 vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         317 VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHH
Confidence            888888655321      111   1     2344 4568999999999999655543

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.25  E-value=3.1e-11  Score=109.39  Aligned_cols=110  Identities=14%  Similarity=0.090  Sum_probs=83.5

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCCCccccCccCC
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~  156 (203)
                      -++.+++|+|+|+++.++.+++.+++++++++.+.+++++++||++++ ++++|+|+.+|++..... ......++|.+.
T Consensus       186 l~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-~~~~l~~~~~~~  264 (408)
T TIGR03520       186 VSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-KNFDWQSLLREP  264 (408)
T ss_pred             hccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-CCCCHHHHcCCC
Confidence            567889999999998789999999999999999999999999999864 689999999999864321 122334455442


Q ss_pred             c-----c---chHHHHhh------hceeeCCcEEEEEehhhHHHHH
Q 028824          157 V-----D---STWKVCEK------CLSFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       157 v-----~---~~~~~~~~------llv~~~g~lvGiVt~~DI~~~L  188 (203)
                      .     .   ...+.|++      ++++++|.++|+||.+|+++.+
T Consensus       265 ~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileei  310 (408)
T TIGR03520       265 YFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEI  310 (408)
T ss_pred             eEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            1     1   12333321      3456789999999999995555

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.24  E-value=5.5e-11  Score=103.41  Aligned_cols=113  Identities=21%  Similarity=0.238  Sum_probs=84.6

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhc-CCCccccCccC
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS-GSGRADNSMFP  155 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~  155 (203)
                      ..+.+.+|+++|+++.++.+++.+++++++++.+.+++++++||++++ ++++|+|+.+|++...... ....+.++|.+
T Consensus        62 l~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~r~  141 (292)
T PRK15094         62 MDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQ  141 (292)
T ss_pred             hccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHcCC
Confidence            557888999999987679999999999999999999999999999876 7999999999998643221 12224555654


Q ss_pred             Ccc--------chHHHHh-----hh-ceeeCCcEEEEEehhhHHHHHHH
Q 028824          156 EVD--------STWKVCE-----KC-LSFENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       156 ~v~--------~~~~~~~-----~l-lv~~~g~lvGiVt~~DI~~~L~a  190 (203)
                      ...        ..++.|+     .+ +++++|.++|+||.+|++..+..
T Consensus       142 ~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivG  190 (292)
T PRK15094        142 AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG  190 (292)
T ss_pred             CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhC
Confidence            321        1233332     23 34567999999999999665543

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.21  E-value=3.5e-11  Score=78.74  Aligned_cols=55  Identities=45%  Similarity=0.685  Sum_probs=52.0

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        85 V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      |+++|++  +++++++++++.++++.|.+++++.+||+|++|+++|+||.+||+++.
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            5789998  899999999999999999999999999999999999999999999753

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.20  E-value=7.2e-11  Score=103.41  Aligned_cols=104  Identities=23%  Similarity=0.268  Sum_probs=82.2

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCc
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEV  157 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v  157 (203)
                      ..++|+|+|++..++.++++++++.+|++.|.+++...+||+|++|+++|+||.+|+.+.....   ....+.++|.+++
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~~  279 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPGG  279 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCCC
Confidence            6778999998533689999999999999999999988888889899999999999998754321   2346778887654


Q ss_pred             cc---------hHHHH-----hhhceeeCCcEEEEEehhhH
Q 028824          158 DS---------TWKVC-----EKCLSFENYICLGSLSLKFL  184 (203)
Q Consensus       158 ~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI  184 (203)
                      ..         ..+.+     ..+++.++|+++|+|+..|+
T Consensus       280 ~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di  320 (326)
T PRK10892        280 IRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL  320 (326)
T ss_pred             EEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence            31         12222     45777788999999999999

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.15  E-value=5.1e-11  Score=104.59  Aligned_cols=134  Identities=23%  Similarity=0.305  Sum_probs=106.4

Q ss_pred             cccccCCccccccceEecccc---cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEE
Q 028824           56 VSALRRSSAVFASGTLTANSA---APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV  132 (203)
Q Consensus        56 ~~~~r~~~~~~~~g~~~~~~l---~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiV  132 (203)
                      .|..+.++..++..++..+.+   ..+.+-+.|+|+|++.++..++.+++++++..++..+.+.++|||+|+..+++|+|
T Consensus       158 lPvlstsYDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvV  237 (432)
T COG4109         158 LPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVV  237 (432)
T ss_pred             CceEEecccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEE
Confidence            556677778887777766666   34456678999999877899999999999999999999999999999999999999


Q ss_pred             ehHHHhhchhhcCCCccccCccCCcc--------------chHHHHhhhcee-eCCcEEEEEehhhHHHHHHHHh
Q 028824          133 SDYDLLALDSISGSGRADNSMFPEVD--------------STWKVCEKCLSF-ENYICLGSLSLKFLTFLLIFVN  192 (203)
Q Consensus       133 t~~Dll~~~~~~~~~~v~~~m~~~v~--------------~~~~~~~~llv~-~~g~lvGiVt~~DI~~~L~a~~  192 (203)
                      |.+|+....   ....++.+|..++.              ..|+.++-+++. ++.+++|+|+++|+++.|+...
T Consensus       238 t~rDv~~~~---~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q  309 (432)
T COG4109         238 TMRDVLDKK---PSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQ  309 (432)
T ss_pred             EehhhhcCC---CCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhc
Confidence            999998643   34567777777542              246666777765 5789999999999966655433

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.11  E-value=4.8e-10  Score=84.57  Aligned_cols=94  Identities=24%  Similarity=0.287  Sum_probs=70.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh---cCCCccccCccCCccc---------hH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---SGSGRADNSMFPEVDS---------TW  161 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~---~~~~~v~~~m~~~v~~---------~~  161 (203)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++....   ....++.++|..++..         ..
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v~   82 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKLS   82 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHHH
Confidence            68899999999999999999999999999988999999999999864322   2345677888765431         11


Q ss_pred             HHH--------------hhhc-eeeCCcEEEEEehhhHHHH
Q 028824          162 KVC--------------EKCL-SFENYICLGSLSLKFLTFL  187 (203)
Q Consensus       162 ~~~--------------~~ll-v~~~g~lvGiVt~~DI~~~  187 (203)
                      +.+              ..++ ++++|+++|+||..|++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          83 RILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             hhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence            111              1122 2356999999999999543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.10  E-value=3e-10  Score=99.12  Aligned_cols=101  Identities=17%  Similarity=0.137  Sum_probs=79.7

Q ss_pred             ccccccccccCCC--eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh--cCCCccccCccCCc
Q 028824           82 VYTVGDFMTTKEE--LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--SGSGRADNSMFPEV  157 (203)
Q Consensus        82 ~~~V~diM~~~~~--~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~--~~~~~v~~~m~~~v  157 (203)
                      ..+|+++|.+  +  +.++++++++.+|++.|.+++...+||+|++|+++|+|+..|+.+....  .....+.++|.++.
T Consensus       196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence            6789999998  7  9999999999999999999999999999999999999999999865322  22345677777654


Q ss_pred             cc---------hHHHH-----hhhceee-CCcEEEEEehhhH
Q 028824          158 DS---------TWKVC-----EKCLSFE-NYICLGSLSLKFL  184 (203)
Q Consensus       158 ~~---------~~~~~-----~~llv~~-~g~lvGiVt~~DI  184 (203)
                      ..         ..+.+     ..++|.+ +|+++|+|+.+|+
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di  315 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF  315 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence            21         22222     3456654 6899999999999

>PRK11573 hypothetical protein; Provisional

Probab=99.09  E-value=6.6e-10  Score=100.94  Aligned_cols=112  Identities=11%  Similarity=-0.010  Sum_probs=83.3

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCCCc---cccCc
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGR---ADNSM  153 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~~~---v~~~m  153 (203)
                      -++.+.+|+|+|+++.++.+++.+++++++++.+.+++++++||++++ ++++|+|+.+|++..........   ..+++
T Consensus       182 l~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~  261 (413)
T PRK11573        182 LDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAA  261 (413)
T ss_pred             hccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhc
Confidence            567889999999999999999999999999999999999999999754 78999999999986432211111   11222


Q ss_pred             cC-----Cccc---hHHHHhh------hceeeCCcEEEEEehhhHHHHHH
Q 028824          154 FP-----EVDS---TWKVCEK------CLSFENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       154 ~~-----~v~~---~~~~~~~------llv~~~g~lvGiVt~~DI~~~L~  189 (203)
                      .+     +-..   ..+.|++      ++++++|..+|+||.+|+++.+-
T Consensus       262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeiv  311 (413)
T PRK11573        262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV  311 (413)
T ss_pred             cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHh
Confidence            22     2112   2334422      45678999999999999955443

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.08  E-value=4e-10  Score=106.01  Aligned_cols=111  Identities=16%  Similarity=0.100  Sum_probs=83.2

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCcc
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMF  154 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~  154 (203)
                      ..++.++|+|+|++  ++.++++++++.|+++.|.+++.+.+||+|++|+++|+|+.+|+.+.....   ....+.++|.
T Consensus       442 ~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~  519 (574)
T PRK01862        442 ERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAH  519 (574)
T ss_pred             hHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence            44577899999998  889999999999999999999999999999999999999999998743211   1234566776


Q ss_pred             CCcc-----c----hHHHH-----hhhceee-C--CcEEEEEehhhHHHHHHH
Q 028824          155 PEVD-----S----TWKVC-----EKCLSFE-N--YICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       155 ~~v~-----~----~~~~~-----~~llv~~-~--g~lvGiVt~~DI~~~L~a  190 (203)
                      ++..     .    ..+.+     +.+++.+ +  ++++|+|+++|+++.+.+
T Consensus       520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            5432     1    12222     3355544 3  489999999999655544

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.06  E-value=8e-10  Score=100.84  Aligned_cols=108  Identities=24%  Similarity=0.193  Sum_probs=82.6

Q ss_pred             CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccC
Q 028824           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFP  155 (203)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~  155 (203)
                      .+..++++++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++.....   ....+.++|.+
T Consensus       331 ~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~  408 (454)
T TIGR01137       331 VLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSK  408 (454)
T ss_pred             HhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCC
Confidence            3677899999998  899999999999999999999999999999889999999999998753321   22346666765


Q ss_pred             Ccc---------chHHHH---hhhceeeCCcEEEEEehhhHHHHH
Q 028824          156 EVD---------STWKVC---EKCLSFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       156 ~v~---------~~~~~~---~~llv~~~g~lvGiVt~~DI~~~L  188 (203)
                      .+.         .....+   ...++.++++++|+||.+|++..|
T Consensus       409 ~~~~v~~~~~l~~a~~~~~~~~~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       409 KFIQIGEGEKLSDLSKFLEKNSSAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CCeEECCcCcHHHHHHHHHHCCeeEEEECCEEEEEEEHHHHHHhh
Confidence            431         111122   234566789999999999995543

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.05  E-value=1.9e-09  Score=98.28  Aligned_cols=112  Identities=23%  Similarity=0.198  Sum_probs=85.9

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEe-CCCeEEEEEehHHHhhchhhcCC-Cccc-----
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGS-GRAD-----  150 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd-~~g~lvGiVt~~Dll~~~~~~~~-~~v~-----  150 (203)
                      ..+++.+|+++|+++.++.+++.+.+++++.+.+.+++++++||++ +.+.++|+|+.+|++........ ....     
T Consensus       201 ~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~  280 (429)
T COG1253         201 LDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRP  280 (429)
T ss_pred             hccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccC
Confidence            6788999999999999999999999999999999999999999998 55799999999999976543321 2111     


Q ss_pred             cCccCCccc---hHHHHhh------hceeeCCcEEEEEehhhHHHHHH
Q 028824          151 NSMFPEVDS---TWKVCEK------CLSFENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       151 ~~m~~~v~~---~~~~~~~------llv~~~g~lvGiVt~~DI~~~L~  189 (203)
                      .+..++...   .++.|++      ++++++|.+.|+||.+||++.+-
T Consensus       281 ~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIv  328 (429)
T COG1253         281 PLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIV  328 (429)
T ss_pred             CeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHh
Confidence            122222222   3344432      56778999999999999955443

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.01  E-value=1.8e-09  Score=78.39  Aligned_cols=85  Identities=21%  Similarity=0.239  Sum_probs=62.9

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCCCccccCccCC--ccchHHHH-----h
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPE--VDSTWKVC-----E  165 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~--v~~~~~~~-----~  165 (203)
                      .++++++++++.+|++.|.+++++.+||+|++ |+++|+||..|+.+...       -....++  +....+.+     .
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~   74 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------LVSIHPERSLFDAALLLLKNKIH   74 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------eEEeCCCCcHHHHHHHHHHCCCC
Confidence            47899999999999999999999999999974 89999999999986432       0001111  11222222     4


Q ss_pred             hhceee-C-CcEEEEEehhhHH
Q 028824          166 KCLSFE-N-YICLGSLSLKFLT  185 (203)
Q Consensus       166 ~llv~~-~-g~lvGiVt~~DI~  185 (203)
                      ++++.+ + |+++|+|+.+|++
T Consensus        75 ~lpVvd~~~~~~~giit~~d~~   96 (98)
T cd04618          75 RLPVIDPSTGTGLYILTSRRIL   96 (98)
T ss_pred             EeeEEECCCCCceEEeehhhhh
Confidence            466654 4 7999999999993

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.01  E-value=1.1e-09  Score=101.11  Aligned_cols=108  Identities=18%  Similarity=0.198  Sum_probs=84.4

Q ss_pred             cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCC
Q 028824           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (203)
Q Consensus        77 ~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~  156 (203)
                      ...+..+++.++|.+  ++.++.+++++.++++.|.+++++.+||+|++++++|+||.+|+....   ....+.++|..+
T Consensus        83 ~~~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~---~~~~V~diMt~~  157 (479)
T PRK07807         83 AEVVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD---RFTQVRDVMSTD  157 (479)
T ss_pred             HHHHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc---cCCCHHHhccCC
Confidence            455677889999998  899999999999999999999999999999999999999999997542   224577778765


Q ss_pred             ccc---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHHH
Q 028824          157 VDS---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       157 v~~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~  189 (203)
                      +..         ..+.+     ..+++. ++++++|+|+.+|++....
T Consensus       158 ~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        158 LVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             ceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            431         12222     335554 4789999999999965443

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.00  E-value=3.8e-09  Score=77.51  Aligned_cols=92  Identities=17%  Similarity=0.193  Sum_probs=68.5

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-CCCccccCccCCcc-----c----hHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFPEVD-----S----TWKV  163 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~~v~-----~----~~~~  163 (203)
                      ++.++++++++.+|++.|.+++.+.++|+|++|+++|+|+..|+.+..... ....+.++|.....     .    ....
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al~~   81 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLLRI   81 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHHHH
Confidence            467899999999999999999999999999889999999999998743221 22346666754432     1    1222


Q ss_pred             H-----hhhceee-CCcEEEEEehhhHH
Q 028824          164 C-----EKCLSFE-NYICLGSLSLKFLT  185 (203)
Q Consensus       164 ~-----~~llv~~-~g~lvGiVt~~DI~  185 (203)
                      +     ..+++.+ +|+++|+||..|++
T Consensus        82 m~~~~~~~lpVvd~~~~~~Giit~~di~  109 (111)
T cd04603          82 FRETEPPVVAVVDKEGKLVGTIYERELL  109 (111)
T ss_pred             HHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence            2     3355554 59999999999994

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.99  E-value=2.8e-09  Score=76.85  Aligned_cols=85  Identities=25%  Similarity=0.273  Sum_probs=63.1

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccC--CccchHHHH-----hh
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP--EVDSTWKVC-----EK  166 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~--~v~~~~~~~-----~~  166 (203)
                      ++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++...       -....+  ......+.+     ..
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~   74 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKSE-------VVTATKRTTVSECAQKMKRNRIEQ   74 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCCC-------cEEecCCCCHHHHHHHHHHhCCCe
Confidence            6788999999999999999999999999998899999999999986432       000001  011122222     33


Q ss_pred             hceee-CCcEEEEEehhhHH
Q 028824          167 CLSFE-NYICLGSLSLKFLT  185 (203)
Q Consensus       167 llv~~-~g~lvGiVt~~DI~  185 (203)
                      +++.+ +|+++|+|+.+|++
T Consensus        75 lpVv~~~~~~~Giit~~di~   94 (96)
T cd04614          75 IPIINGNDKLIGLLRDHDLL   94 (96)
T ss_pred             eeEECCCCcEEEEEEHHHhh
Confidence            55554 48999999999993

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.97  E-value=4e-09  Score=77.16  Aligned_cols=92  Identities=22%  Similarity=0.205  Sum_probs=67.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC--------CCccccCccCCcc-------
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG--------SGRADNSMFPEVD-------  158 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~--------~~~v~~~m~~~v~-------  158 (203)
                      ++.+++.++++.++++.|.+++++.+||+|++|+++|+|+.+|+++......        ...+.++|.+...       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~   81 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDAD   81 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCC
Confidence            5789999999999999999999999999998899999999999987543211        2334455554321       


Q ss_pred             --chHHHH---hhhce-eeCCcEEEEEehhhHH
Q 028824          159 --STWKVC---EKCLS-FENYICLGSLSLKFLT  185 (203)
Q Consensus       159 --~~~~~~---~~llv-~~~g~lvGiVt~~DI~  185 (203)
                        ...+.+   ..+++ +++|+++|+++..|++
T Consensus        82 l~~a~~~~~~~~~~~Vv~~~~~~~Gvit~~dil  114 (116)
T cd04643          82 IEEILHLLIDQPFLPVVDDDGIFIGIITRREIL  114 (116)
T ss_pred             HHHHHHHHhcCCceeEEeCCCeEEEEEEHHHhh
Confidence              111222   22444 4578999999999993

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.95  E-value=1.3e-09  Score=100.52  Aligned_cols=108  Identities=22%  Similarity=0.260  Sum_probs=90.1

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---CCccccCcc
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMF  154 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~~~v~~~m~  154 (203)
                      .++-..+|+++|+.  ++++|++.+++.+|+..|.+.+++.+.|+++++++.||||.+|+.......+   ..++.++|+
T Consensus       144 ~e~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT  221 (610)
T COG2905         144 SEFILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT  221 (610)
T ss_pred             chHHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence            34456789999998  8999999999999999999999999999999999999999999997654433   447889999


Q ss_pred             CCccch------HH--------HHhhhceeeCCcEEEEEehhhHHHH
Q 028824          155 PEVDST------WK--------VCEKCLSFENYICLGSLSLKFLTFL  187 (203)
Q Consensus       155 ~~v~~~------~~--------~~~~llv~~~g~lvGiVt~~DI~~~  187 (203)
                      .++...      .+        ...+++|.++|+++|+|+..||+..
T Consensus       222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl~l  268 (610)
T COG2905         222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDILRL  268 (610)
T ss_pred             cCceeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHHHh
Confidence            877532      11        1267899999999999999999443

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.95  E-value=7.6e-09  Score=75.03  Aligned_cols=92  Identities=24%  Similarity=0.338  Sum_probs=68.1

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC----CCccccCccCCcc---------ch
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----SGRADNSMFPEVD---------ST  160 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~----~~~v~~~m~~~v~---------~~  160 (203)
                      ++.+++++.++.++++.|.+++++.+||+|++++++|+++.+|+++......    ...+.++|.....         ..
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   81 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence            5788999999999999999999999999998899999999999986543211    2245555644321         11


Q ss_pred             HHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          161 WKVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       161 ~~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      .+.+     ..+++.++|+++|+|+..|++
T Consensus        82 l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~  111 (113)
T cd04623          82 MALMTERRFRHLPVVDGGKLVGIVSIGDVV  111 (113)
T ss_pred             HHHHHHcCCCEeEEEeCCEEEEEEEHHHhh
Confidence            2222     235565569999999999993

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.94  E-value=8.8e-09  Score=76.36  Aligned_cols=48  Identities=29%  Similarity=0.693  Sum_probs=44.9

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ++.++++++++.+|++.|.+++++.+||+|++|+++|+++.+|++.+.
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~   49 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLA   49 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHH
Confidence            678999999999999999999999999999899999999999999653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.94  E-value=6.5e-09  Score=76.51  Aligned_cols=91  Identities=24%  Similarity=0.256  Sum_probs=68.0

Q ss_pred             eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh----cCCCccccCccCCcc---------chH
Q 028824           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----SGSGRADNSMFPEVD---------STW  161 (203)
Q Consensus        95 ~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~----~~~~~v~~~m~~~v~---------~~~  161 (203)
                      +.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+.+....    .....+.++|..+..         ..+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~   82 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVW   82 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHH
Confidence            6788999999999999999999999999999999999999999865321    122345556654332         122


Q ss_pred             HHH-----hhhceee-CCcEEEEEehhhHH
Q 028824          162 KVC-----EKCLSFE-NYICLGSLSLKFLT  185 (203)
Q Consensus       162 ~~~-----~~llv~~-~g~lvGiVt~~DI~  185 (203)
                      +.+     ..+++.+ +|+++|+|+.+|++
T Consensus        83 ~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~  112 (114)
T cd04619          83 QVMKQRGLKNIPVVDENARPLGVLNARDAL  112 (114)
T ss_pred             HHHHHcCCCeEEEECCCCcEEEEEEhHhhc
Confidence            222     3466654 68999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.94  E-value=6e-09  Score=79.77  Aligned_cols=92  Identities=17%  Similarity=0.202  Sum_probs=69.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC--------------------------CC
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG--------------------------SG  147 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~--------------------------~~  147 (203)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+|+..|+++......                          ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL   81 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence            6788999999999999999999999999998899999999999997543210                          12


Q ss_pred             ccccCccCCccc---------hHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          148 RADNSMFPEVDS---------TWKVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       148 ~v~~~m~~~v~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      .+.++|...+..         ....+     ..+++.++|+++|+|+..|++
T Consensus        82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~  133 (135)
T cd04621          82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDIC  133 (135)
T ss_pred             cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHh
Confidence            455666543321         12222     346666679999999999994

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.92  E-value=8.4e-09  Score=75.67  Aligned_cols=92  Identities=18%  Similarity=0.169  Sum_probs=67.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhc----CCCccccCccCCcc---------c
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS----GSGRADNSMFPEVD---------S  159 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~----~~~~v~~~m~~~v~---------~  159 (203)
                      ++.++.+++++.++++.|.+++++.+||+|++ |+++|+++.+|+++.....    ....+.++|..++.         .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY   81 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence            57899999999999999999999999999987 8999999999998743221    11244555644321         1


Q ss_pred             hHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          160 TWKVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       160 ~~~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      ....+     ..+++.++|+++|+|+..|++
T Consensus        82 ~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~  112 (114)
T cd04630          82 CARLMERTNIRRAPVVENNELIGIISLTDIF  112 (114)
T ss_pred             HHHHHHHcCCCEeeEeeCCEEEEEEEHHHhh
Confidence            22222     235555569999999999993

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.91  E-value=8.6e-09  Score=94.55  Aligned_cols=108  Identities=19%  Similarity=0.108  Sum_probs=82.7

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHH-----CCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccC
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS  152 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~-----~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~  152 (203)
                      ..+.+.+++++|++  ++.++++++++.++++.|.+     ++...++|+|++|+++|+|+.+|++...   ....++++
T Consensus       126 l~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~---~~~~v~~i  200 (449)
T TIGR00400       126 LSYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK---PEEILSSI  200 (449)
T ss_pred             hCCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC---CCCcHHHH
Confidence            45677899999998  99999999999999999985     4567889999889999999999998642   23456777


Q ss_pred             ccCCcc---------chHHHH-----hhhce-eeCCcEEEEEehhhHHHHHHH
Q 028824          153 MFPEVD---------STWKVC-----EKCLS-FENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       153 m~~~v~---------~~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~a  190 (203)
                      |.+++.         ...+.+     ..++| +++|+++|+|+.+|+++.+..
T Consensus       201 m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~  253 (449)
T TIGR00400       201 MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS  253 (449)
T ss_pred             hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence            766432         122222     22444 467999999999999777754

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.91  E-value=8.3e-09  Score=75.22  Aligned_cols=92  Identities=26%  Similarity=0.335  Sum_probs=67.9

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh-----cCCCccccCccCCcc---------c
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-----SGSGRADNSMFPEVD---------S  159 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~-----~~~~~v~~~m~~~v~---------~  159 (203)
                      ++.++++++++.++++.|.+++++.+||+|++|+++|+|+..|+++....     .....+.++|.....         .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD   81 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence            57889999999999999999999999999988999999999999864321     122344455543321         1


Q ss_pred             hHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          160 TWKVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       160 ~~~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      ..+.+     ..+++.++|+++|+|+.+|++
T Consensus        82 ~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~  112 (114)
T cd04629          82 LAQLMLKAKPKRYPVVDDGKLVGQISRRDVL  112 (114)
T ss_pred             HHHHHHHhCCCccCEEECCEEEEEEEHHHHh
Confidence            12222     346666669999999999993

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.90  E-value=1.1e-08  Score=75.73  Aligned_cols=92  Identities=28%  Similarity=0.416  Sum_probs=67.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC-------------CCccccCccCCcc--
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-------------SGRADNSMFPEVD--  158 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~-------------~~~v~~~m~~~v~--  158 (203)
                      ++.++.++.++.++.+.|.+++++.+||+|++|+++|+|+..||+.......             ...+.++|.....  
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   82 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVTV   82 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCeee
Confidence            6889999999999999999999999999998899999999999986533211             1134455544322  


Q ss_pred             -------chHHHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824          159 -------STWKVC-----EKCLSF-ENYICLGSLSLKFLT  185 (203)
Q Consensus       159 -------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~  185 (203)
                             ...+.+     ..+++. ++|+++|+|+..|++
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~  122 (124)
T cd04600          83 RPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI  122 (124)
T ss_pred             CCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence                   122223     235554 489999999999993

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.88  E-value=8.5e-09  Score=78.10  Aligned_cols=92  Identities=29%  Similarity=0.420  Sum_probs=67.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh-------------------------cCCCc
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-------------------------SGSGR  148 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~-------------------------~~~~~  148 (203)
                      ++.++.+++++.++++.|.++++..+||+|++|+++|+|+..|+.+....                         .....
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK   82 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence            67889999999999999999999999999988999999999999864211                         11223


Q ss_pred             cccCccCCcc---------chHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          149 ADNSMFPEVD---------STWKVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       149 v~~~m~~~v~---------~~~~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      +.++|.+...         ...+.+     ..+++.++|+++|+|+..|++
T Consensus        83 v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~  133 (135)
T cd04586          83 VADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLL  133 (135)
T ss_pred             HHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhh
Confidence            4445543221         122222     346665689999999999983

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.88  E-value=1.2e-08  Score=76.39  Aligned_cols=92  Identities=22%  Similarity=0.277  Sum_probs=66.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh----------------cCCCccccCccCCc
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----------------SGSGRADNSMFPEV  157 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~----------------~~~~~v~~~m~~~v  157 (203)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+|+..|+.++...                .....+.++|..+.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV   81 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence            57889999999999999999999999999988999999999999854211                01123445564432


Q ss_pred             c-----c----hHHHH-----hhhceee---CCcEEEEEehhhHH
Q 028824          158 D-----S----TWKVC-----EKCLSFE---NYICLGSLSLKFLT  185 (203)
Q Consensus       158 ~-----~----~~~~~-----~~llv~~---~g~lvGiVt~~DI~  185 (203)
                      .     .    ..+.+     ..+++.+   +|+++|+|+.+|++
T Consensus        82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~  126 (128)
T cd04632          82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL  126 (128)
T ss_pred             ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence            2     1    11212     2345543   49999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.87  E-value=1.4e-08  Score=76.15  Aligned_cols=92  Identities=22%  Similarity=0.342  Sum_probs=66.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch-----h----hcCCCccccCccCCcc------
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD-----S----ISGSGRADNSMFPEVD------  158 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~-----~----~~~~~~v~~~m~~~v~------  158 (203)
                      ++.++..++++.++++.|.+++...+||+|++|+++|+|+.+|+.+..     .    ......+.++|.+...      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~   81 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL   81 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence            467899999999999999999999999999889999999999998521     1    1122345666654211      


Q ss_pred             ---------chHHHH-----hhhceee-C-CcEEEEEehhhHH
Q 028824          159 ---------STWKVC-----EKCLSFE-N-YICLGSLSLKFLT  185 (203)
Q Consensus       159 ---------~~~~~~-----~~llv~~-~-g~lvGiVt~~DI~  185 (203)
                               ..++.+     ..+++.+ + |+++|+|+..|++
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~  124 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIA  124 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHh
Confidence                     112222     2355554 3 6999999999994

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.87  E-value=2.3e-08  Score=72.46  Aligned_cols=91  Identities=18%  Similarity=0.307  Sum_probs=66.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc-----c----hHHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD-----S----TWKVC  164 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~-----~----~~~~~  164 (203)
                      ++.++.+++++.++++.|.++++..+||+|++|+++|+|+.+|+++..... ...+.++|.....     .    ..+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~-~~~~~~~~~~~~~~v~~~~~l~~~~~~~   81 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD-KKSVEDIMTRNVITATPDEPIDVAARKM   81 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC-ccCHHHhcCCCCeEECCCCcHHHHHHHH
Confidence            678899999999999999999999999999889999999999998653322 1234455533321     1    11222


Q ss_pred             -----hhhc-eeeCCcEEEEEehhhHH
Q 028824          165 -----EKCL-SFENYICLGSLSLKFLT  185 (203)
Q Consensus       165 -----~~ll-v~~~g~lvGiVt~~DI~  185 (203)
                           ..++ ++++|+++|+|+..|+.
T Consensus        82 ~~~~~~~~~Vv~~~~~~~G~v~~~di~  108 (110)
T cd04605          82 ERHNISALPVVDAENRVIGIITSEDIS  108 (110)
T ss_pred             HHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence                 1233 44578999999999983

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.87  E-value=1.5e-08  Score=73.68  Aligned_cols=92  Identities=18%  Similarity=0.230  Sum_probs=67.9

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc--CCCccccCccCCcc-----c----hHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--GSGRADNSMFPEVD-----S----TWK  162 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~--~~~~v~~~m~~~v~-----~----~~~  162 (203)
                      ++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|++......  ....+.++|.....     .    ..+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~   81 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEALD   81 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHHHH
Confidence            578899999999999999999999999999889999999999998653321  12234455544332     1    222


Q ss_pred             HH-----hhhceeeCCcEEEEEehhhHH
Q 028824          163 VC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       163 ~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      .+     ..+++.++|+++|+|+..|++
T Consensus        82 ~~~~~~~~~~~Vv~~~~~~G~it~~di~  109 (111)
T cd04626          82 IMREKQIGRLPVVDDNKLIGVVRTKDIL  109 (111)
T ss_pred             HHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence            22     335565569999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.86  E-value=1.8e-08  Score=73.94  Aligned_cols=92  Identities=23%  Similarity=0.207  Sum_probs=66.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---CCccccCccCCcc-----c----hH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMFPEVD-----S----TW  161 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~~~v~~~m~~~v~-----~----~~  161 (203)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+||++......   ...+.++|.....     .    ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l   81 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHAL   81 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHHH
Confidence            5678899999999999999999999999998899999999999987543211   1124455544322     1    22


Q ss_pred             HHH-----hhhcee-eC--CcEEEEEehhhHH
Q 028824          162 KVC-----EKCLSF-EN--YICLGSLSLKFLT  185 (203)
Q Consensus       162 ~~~-----~~llv~-~~--g~lvGiVt~~DI~  185 (203)
                      +.+     ..+++. ++  |+++|+|+..|++
T Consensus        82 ~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~  113 (115)
T cd04593          82 DRMASRGLRQLPVVDRGNPGQVLGLLTRENVL  113 (115)
T ss_pred             HHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence            222     235554 44  7999999999994

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.86  E-value=1.4e-08  Score=73.79  Aligned_cols=92  Identities=21%  Similarity=0.321  Sum_probs=67.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh-cCCCccccCccCCcc---------chHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-SGSGRADNSMFPEVD---------STWKV  163 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~-~~~~~v~~~m~~~v~---------~~~~~  163 (203)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+.+.... .....+.++|.....         ...+.
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~   81 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVLRL   81 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHHHH
Confidence            57889999999999999998899999999988999999999999875322 122345555544322         12222


Q ss_pred             H-----hhhceee-CCcEEEEEehhhHH
Q 028824          164 C-----EKCLSFE-NYICLGSLSLKFLT  185 (203)
Q Consensus       164 ~-----~~llv~~-~g~lvGiVt~~DI~  185 (203)
                      +     ..+++.+ +|+++|+++..|+.
T Consensus        82 ~~~~~~~~~~Vv~~~~~~~G~it~~dl~  109 (111)
T cd04639          82 MQQGGAPAVPVVDGSGRLVGLVTLENVG  109 (111)
T ss_pred             HHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence            2     2355544 49999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.85  E-value=1.4e-08  Score=74.92  Aligned_cols=92  Identities=22%  Similarity=0.266  Sum_probs=66.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc------------CCCccccCccCCcc---
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------------GSGRADNSMFPEVD---  158 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~------------~~~~v~~~m~~~v~---  158 (203)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++.....            ....+.++|..+..   
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~   81 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeC
Confidence            578899999999999999999999999999889999999999998753221            12234445543321   


Q ss_pred             --c----hHHHH-----hhhceee-CCcEEEEEehhhHH
Q 028824          159 --S----TWKVC-----EKCLSFE-NYICLGSLSLKFLT  185 (203)
Q Consensus       159 --~----~~~~~-----~~llv~~-~g~lvGiVt~~DI~  185 (203)
                        .    ..+.+     ..+++.+ +|+++|+++..|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~  120 (122)
T cd04803          82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL  120 (122)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence              1    12222     2345544 48999999999994

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.84  E-value=2.1e-08  Score=72.82  Aligned_cols=92  Identities=26%  Similarity=0.258  Sum_probs=67.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---CCccccCccCCcc-----c----hH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMFPEVD-----S----TW  161 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~~~v~~~m~~~v~-----~----~~  161 (203)
                      ++.++.+++++.++++.|.+.++..+||+|++|+++|+|+..|+++......   ...+.++|.+...     .    ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   81 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDAL   81 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHHHH
Confidence            6788999999999999999999999999998899999999999986533211   1345555654332     1    12


Q ss_pred             HHH-----hhhceee--CCcEEEEEehhhHH
Q 028824          162 KVC-----EKCLSFE--NYICLGSLSLKFLT  185 (203)
Q Consensus       162 ~~~-----~~llv~~--~g~lvGiVt~~DI~  185 (203)
                      +.+     ..+++.+  +++++|+++..|++
T Consensus        82 ~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~  112 (114)
T cd04613          82 KKFEDSDYEQLPVVDDDPGKLLGILSRSDLL  112 (114)
T ss_pred             HHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence            222     2355544  48999999999984

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.84  E-value=2.4e-08  Score=71.99  Aligned_cols=91  Identities=23%  Similarity=0.245  Sum_probs=65.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---CCccccCccCCcc-----c----hH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMFPEVD-----S----TW  161 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~~~v~~~m~~~v~-----~----~~  161 (203)
                      ++.++++++++.++++.|.+++++.+||+|+ |+++|+++..|+.+......   ...+.++|.....     .    ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   80 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS   80 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence            5788999999999999999999999999997 99999999999997633211   1234444543321     1    11


Q ss_pred             HHHh---h-hceeeCCcEEEEEehhhHH
Q 028824          162 KVCE---K-CLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       162 ~~~~---~-llv~~~g~lvGiVt~~DI~  185 (203)
                      ..++   . .+++++|+++|+|+.+|++
T Consensus        81 ~~~~~~~~~~vv~~~~~~~Gvvt~~di~  108 (110)
T cd04609          81 ELLDRGNVAVVVDEGGKFVGIITRADLL  108 (110)
T ss_pred             HHHHhCCceeEEecCCeEEEEEeHHHhh
Confidence            2222   2 3345679999999999994

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.84  E-value=9e-09  Score=75.50  Aligned_cols=70  Identities=23%  Similarity=0.281  Sum_probs=59.6

Q ss_pred             cceEecccccCC----CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPS----SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~----~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.++..++...    ....++.++|..  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        37 ~G~v~~~dl~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          37 LGQVTLSDLLEIGPNDYETLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             EEEEEHHHHHhhccccccccChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            577877775321    123469999987  7899999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.83  E-value=3.4e-08  Score=71.72  Aligned_cols=91  Identities=22%  Similarity=0.309  Sum_probs=67.9

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-CCCccccCccCCcc---------chHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFPEVD---------STWKV  163 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~~v~---------~~~~~  163 (203)
                      ++.+++.+.++.++.+.|.+.++..+||+|+ |+++|+|+..|+.+..... ....+.++|.....         .....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   81 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQEL   81 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHHHH
Confidence            6789999999999999999999999999998 9999999999998654221 22345555654332         12222


Q ss_pred             H-----hhhceeeCCcEEEEEehhhHH
Q 028824          164 C-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       164 ~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      +     ..+++.++|+++|+|+..|++
T Consensus        82 ~~~~~~~~~~V~~~~~~~Gvvt~~di~  108 (110)
T cd04595          82 MVEHDIGRVPVVEDGRLVGIVTRTDLL  108 (110)
T ss_pred             HHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence            2     335565689999999999984

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.83  E-value=2.7e-08  Score=73.59  Aligned_cols=92  Identities=24%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccC--Ccc---------c
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFP--EVD---------S  159 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~--~v~---------~  159 (203)
                      ++.++++++++.++++.|.++++..+||+|++|+++|+|+..|+.+.....   ....+.++|..  .+.         .
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   81 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLE   81 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHH
Confidence            578899999999999999999999999999889999999999998754321   12334455542  211         1


Q ss_pred             hHHHH-----hhhceee-C---CcEEEEEehhhHH
Q 028824          160 TWKVC-----EKCLSFE-N---YICLGSLSLKFLT  185 (203)
Q Consensus       160 ~~~~~-----~~llv~~-~---g~lvGiVt~~DI~  185 (203)
                      .++.+     ..+++.+ +   |+++|+|+..|++
T Consensus        82 ~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~  116 (118)
T cd04617          82 AAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             HHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence            22223     3356654 4   5999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.83  E-value=2.4e-08  Score=72.50  Aligned_cols=92  Identities=21%  Similarity=0.268  Sum_probs=65.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCC-CccccCccCCc----c----chHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGS-GRADNSMFPEV----D----STWKV  163 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~-~~v~~~m~~~v----~----~~~~~  163 (203)
                      ++.++++++++.++++.|.+.+++.+||+|++ |+++|+++..|+++....... ..+..++.+..    .    ...+.
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   81 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDLLRPPLFVPESTPLDDLLEE   81 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHHhcCCeecCCCCcHHHHHHH
Confidence            57889999999999999999999999999988 999999999999976432211 12333333211    1    11222


Q ss_pred             H-----hhhcee-eCCcEEEEEehhhHH
Q 028824          164 C-----EKCLSF-ENYICLGSLSLKFLT  185 (203)
Q Consensus       164 ~-----~~llv~-~~g~lvGiVt~~DI~  185 (203)
                      +     ..+++. ++|+++|+|+..|++
T Consensus        82 ~~~~~~~~~~Vv~~~~~~~Gvit~~di~  109 (111)
T cd04590          82 MRKERSHMAIVVDEYGGTAGLVTLEDIL  109 (111)
T ss_pred             HHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence            2     234444 569999999999983

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.83  E-value=1.9e-08  Score=75.92  Aligned_cols=92  Identities=23%  Similarity=0.345  Sum_probs=67.1

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---C--------------------Cccc
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---S--------------------GRAD  150 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~--------------------~~v~  150 (203)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+|+..|+++......   .                    ..+.
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE   81 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence            5788999999999999999999999999998899999999999986543211   0                    0334


Q ss_pred             cCccCCcc-----c----hHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          151 NSMFPEVD-----S----TWKVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       151 ~~m~~~v~-----~----~~~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      ++|.++..     .    ....+     ..+++.++|+++|+++..|++
T Consensus        82 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~  130 (132)
T cd04636          82 EIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII  130 (132)
T ss_pred             HhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence            44544321     1    11222     235665569999999999994

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.83  E-value=1.5e-08  Score=74.21  Aligned_cols=92  Identities=21%  Similarity=0.244  Sum_probs=66.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCC-CcEEEEEeCCCeEEEEEehHHHhhchhhc-CCCccccCccCC--c-----c----ch
Q 028824           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFPE--V-----D----ST  160 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~-~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~~--v-----~----~~  160 (203)
                      ++.++++++++.++++.|.+++ .+.+||+|++|+++|+|+.+|+++..... ....+.++|.+.  .     .    ..
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~a   81 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAEV   81 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHHHH
Confidence            6788999999999999997775 88999999889999999999999764321 223455666431  1     1    12


Q ss_pred             HHHH-----hhhceee-CCcEEEEEehhhHH
Q 028824          161 WKVC-----EKCLSFE-NYICLGSLSLKFLT  185 (203)
Q Consensus       161 ~~~~-----~~llv~~-~g~lvGiVt~~DI~  185 (203)
                      .+.+     ..+++.+ +|+++|+++.+|++
T Consensus        82 ~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~  112 (114)
T cd04801          82 LKLLEEQGLDELAVVEDSGQVIGLITEADLL  112 (114)
T ss_pred             HHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence            2222     2355554 58999999999983

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.83  E-value=3.2e-08  Score=71.25  Aligned_cols=88  Identities=16%  Similarity=0.208  Sum_probs=64.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc---------chHHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD---------STWKVC  164 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~---------~~~~~~  164 (203)
                      ++.+++++.++.+|++.|.+++.+.+||+|++|+++|+++..|+++...    ..+.++|.+...         ...+.+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG----GCCGDHAEPFKVTVSVDDDLRIVLSRM   77 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc----cchhhhcccCCEEECCCCCHHHHHHHH
Confidence            5778999999999999999999999999998899999999999986432    123444443321         122222


Q ss_pred             -----hhhce-eeCCcEEEEEehhhHH
Q 028824          165 -----EKCLS-FENYICLGSLSLKFLT  185 (203)
Q Consensus       165 -----~~llv-~~~g~lvGiVt~~DI~  185 (203)
                           ..+++ +++|+++|+|+..+++
T Consensus        78 ~~~~~~~~~Vv~~~~~~~Gvi~~~~l~  104 (106)
T cd04582          78 FAHDMSWLPCVDEDGRYVGEVTQRSIA  104 (106)
T ss_pred             HHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence                 22444 4568999999999984

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.81  E-value=3.4e-08  Score=71.96  Aligned_cols=92  Identities=18%  Similarity=0.209  Sum_probs=66.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCcc-----c----hH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEVD-----S----TW  161 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v~-----~----~~  161 (203)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++.....   ....+.++|.....     .    ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR   81 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence            357889999999999999999999999999889999999999998642211   22345555544332     1    11


Q ss_pred             HHH-----hhhce-eeCCcEEEEEehhhHH
Q 028824          162 KVC-----EKCLS-FENYICLGSLSLKFLT  185 (203)
Q Consensus       162 ~~~-----~~llv-~~~g~lvGiVt~~DI~  185 (203)
                      +.+     ..+++ +++|+++|+++..|++
T Consensus        82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~  111 (113)
T cd04615          82 WLMSNNNISRLPVLDDKGKVGGIVTEDDIL  111 (113)
T ss_pred             HHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence            222     22343 4568999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.81  E-value=2.5e-08  Score=73.96  Aligned_cols=92  Identities=23%  Similarity=0.281  Sum_probs=66.2

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcC--------------CCccccCccCCcc
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG--------------SGRADNSMFPEVD  158 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~--------------~~~v~~~m~~~v~  158 (203)
                      ++.++.++.++.++++.|.+.+...+||+|++ |+++|+|+..|++.......              ...+.++|.....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVI   81 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCce
Confidence            57889999999999999999999999999987 99999999999986532211              1133344443221


Q ss_pred             ---------chHHHH-----hhhceee-CCcEEEEEehhhHH
Q 028824          159 ---------STWKVC-----EKCLSFE-NYICLGSLSLKFLT  185 (203)
Q Consensus       159 ---------~~~~~~-----~~llv~~-~g~lvGiVt~~DI~  185 (203)
                               .....+     ..+++.+ +|+++|+|+..|++
T Consensus        82 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~  123 (125)
T cd04631          82 TITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL  123 (125)
T ss_pred             EeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhh
Confidence                     122222     2355554 58999999999994

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.81  E-value=3.1e-08  Score=71.91  Aligned_cols=89  Identities=24%  Similarity=0.254  Sum_probs=66.0

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc-----c----hHHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD-----S----TWKVC  164 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~-----~----~~~~~  164 (203)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+|+..|++...   ....+.++|.....     .    ..+.+
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~---~~~~v~~~~~~~~~~v~~~~~l~~~~~~~   79 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD---PDTTIEKVMTKNPITVNPKTSVASVAHMM   79 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc---ccccHHHHhcCCCeEECCCCCHHHHHHHH
Confidence            688999999999999999999999999999889999999999998542   12234445543221     1    12222


Q ss_pred             -----hhhcee-eCCcEEEEEehhhHH
Q 028824          165 -----EKCLSF-ENYICLGSLSLKFLT  185 (203)
Q Consensus       165 -----~~llv~-~~g~lvGiVt~~DI~  185 (203)
                           ..+++. ++|+++|+++..|++
T Consensus        80 ~~~~~~~~~Vv~~~~~~~G~it~~di~  106 (108)
T cd04596          80 IWEGIEMLPVVDDNKKLLGIISRQDVL  106 (108)
T ss_pred             HHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence                 234444 578999999999993

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.80  E-value=4.8e-08  Score=70.42  Aligned_cols=90  Identities=21%  Similarity=0.272  Sum_probs=66.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc-----c----hHHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD-----S----TWKVC  164 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~-----~----~~~~~  164 (203)
                      ++.+++++.++.++++.|.++++..+||+|++|+++|+|+..|+++...  ....+.++|.....     .    ..+.+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~--~~~~v~~~~~~~~~~v~~~~~~~~~~~~~   80 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK--EAKSLEDIMLEDVFTVQPDASLRDVLGLV   80 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh--cCCcHhHhhcCCceEECCCCcHHHHHHHH
Confidence            5788999999999999999999999999998899999999999986432  12234455544322     1    12222


Q ss_pred             -----hhhce-eeCCcEEEEEehhhHH
Q 028824          165 -----EKCLS-FENYICLGSLSLKFLT  185 (203)
Q Consensus       165 -----~~llv-~~~g~lvGiVt~~DI~  185 (203)
                           ..+++ +++|+++|+++.+|++
T Consensus        81 ~~~~~~~~~vv~~~g~~~Gvit~~~l~  107 (109)
T cd04583          81 LKRGPKYVPVVDEDGKLVGLITRSSLV  107 (109)
T ss_pred             HHcCCceeeEECCCCeEEEEEehHHhh
Confidence                 22444 4578999999999984

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.80  E-value=4.2e-08  Score=73.00  Aligned_cols=91  Identities=18%  Similarity=0.178  Sum_probs=64.5

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcC-C-C----------ccccCccCCcc--
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG-S-G----------RADNSMFPEVD--  158 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~-~-~----------~v~~~m~~~v~--  158 (203)
                      ++.++.+++++.++++.|.+++++.+||+|++ |+++|+|+..|++++..... . .          ....+|..++.  
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI   81 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence            67889999999999999999999999999987 99999999999987532210 0 0          01123333221  


Q ss_pred             -------chHHHH-----hhhcee-eCCcEEEEEehhhH
Q 028824          159 -------STWKVC-----EKCLSF-ENYICLGSLSLKFL  184 (203)
Q Consensus       159 -------~~~~~~-----~~llv~-~~g~lvGiVt~~DI  184 (203)
                             ..++.+     ..+++. ++|+++|+||..|+
T Consensus        82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di  120 (123)
T cd04627          82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV  120 (123)
T ss_pred             CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence                   123333     335555 46899999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.80  E-value=4.4e-08  Score=71.24  Aligned_cols=92  Identities=20%  Similarity=0.280  Sum_probs=67.0

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc--CCCccccCccCCcc---------chHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--GSGRADNSMFPEVD---------STWK  162 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~--~~~~v~~~m~~~v~---------~~~~  162 (203)
                      ++.+++.+.++.++++.|.+.++..+||+|++|+++|+|+..|+++.....  ....+.++|.....         ...+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~   81 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAK   81 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHHH
Confidence            577899999999999999999999999999889999999999998653221  12344555554332         1122


Q ss_pred             HH-----hhhce-eeCCcEEEEEehhhHH
Q 028824          163 VC-----EKCLS-FENYICLGSLSLKFLT  185 (203)
Q Consensus       163 ~~-----~~llv-~~~g~lvGiVt~~DI~  185 (203)
                      .+     ..+++ +++|+++|+++..|++
T Consensus        82 ~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~  110 (112)
T cd04624          82 LMRKNNIRHHLVVDKGGELVGVISIRDLV  110 (112)
T ss_pred             HHHHcCccEEEEEcCCCcEEEEEEHHHhc
Confidence            22     12344 4469999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.79  E-value=4.2e-08  Score=71.71  Aligned_cols=92  Identities=17%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc--CCCccccCccCCcc---------chHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--GSGRADNSMFPEVD---------STWK  162 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~--~~~~v~~~m~~~v~---------~~~~  162 (203)
                      .+.++++++++.++++.|.+.++..++|+|++|+++|+|+.+|+++.....  ....+.++|.+...         ...+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~   82 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILA   82 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHHH
Confidence            367889999999999999999999999999889999999999998643221  12345566654332         1122


Q ss_pred             HH-----hhhcee-eCCcEEEEEehhhHH
Q 028824          163 VC-----EKCLSF-ENYICLGSLSLKFLT  185 (203)
Q Consensus       163 ~~-----~~llv~-~~g~lvGiVt~~DI~  185 (203)
                      .+     ..+++. ++|+++|+|+.+|++
T Consensus        83 ~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  111 (113)
T cd04607          83 LMRERSIRHLPILDEEGRVVGLATLDDLL  111 (113)
T ss_pred             HHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence            22     335454 578999999999984

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.78  E-value=1.5e-08  Score=74.59  Aligned_cols=70  Identities=19%  Similarity=0.407  Sum_probs=60.2

Q ss_pred             cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.++.+++..       .....++.++|.+  ++.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+++
T Consensus        37 ~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          37 AGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             EEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            57787666532       2334679999988  8999999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.78  E-value=3.4e-08  Score=71.82  Aligned_cols=92  Identities=23%  Similarity=0.228  Sum_probs=67.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---CCccccCccCCcc---------chH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMFPEVD---------STW  161 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~~~v~~~m~~~v~---------~~~  161 (203)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+|+..++++......   ...+.++|.+...         ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   82 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEAL   82 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHHHH
Confidence            5778899999999999999888999999998899999999999987543221   1245566654332         112


Q ss_pred             HHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824          162 KVC-----EKCLSF-ENYICLGSLSLKFLT  185 (203)
Q Consensus       162 ~~~-----~~llv~-~~g~lvGiVt~~DI~  185 (203)
                      +.+     ..+++. ++|+++|+|+..|++
T Consensus        83 ~~~~~~~~~~~~Vv~~~~~~iG~it~~di~  112 (114)
T cd04604          83 ELMEENKITALPVVDDNGRPVGVLHIHDLL  112 (114)
T ss_pred             HHHHHcCCCEEEEECCCCCEEEEEEHHHhh
Confidence            222     234444 479999999999994

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.78  E-value=6.7e-08  Score=70.24  Aligned_cols=91  Identities=20%  Similarity=0.238  Sum_probs=66.0

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc----CCCccccCccCCcc---------ch
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----GSGRADNSMFPEVD---------ST  160 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~----~~~~v~~~m~~~v~---------~~  160 (203)
                      ++.++.+++++.++++.|.+++...++|.+ +|+++|+++.+|+++.....    ....+.++|.....         ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a   80 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEV   80 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHH
Confidence            577899999999999999888887887776 59999999999998654321    12345566654321         12


Q ss_pred             HHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          161 WKVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       161 ~~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      .+.+     ..+++.++|+++|+|+.+|++
T Consensus        81 ~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~  110 (112)
T cd04625          81 RRLMVERHLRYLPVLDGGTLLGVISFHDVA  110 (112)
T ss_pred             HHHHHHcCCCeeeEEECCEEEEEEEHHHhh
Confidence            2222     346666789999999999994

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.77  E-value=5.9e-08  Score=72.61  Aligned_cols=48  Identities=29%  Similarity=0.511  Sum_probs=44.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ++.++++++++.++++.|.+++++.+||+|++|+++|+|+..|+++..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~   49 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLL   49 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhh
Confidence            578899999999999999999999999999889999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.77  E-value=3.1e-08  Score=90.96  Aligned_cols=103  Identities=26%  Similarity=0.318  Sum_probs=78.0

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC---CeEEEEEehHHHhhchhhcCCCccccCccC-Ccc
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFP-EVD  158 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~---g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~-~v~  158 (203)
                      .+.++.|.+  ++.++++++++.++++.|.+++++.+||+|++   ++++|+|+.+|++....  ....+.++|.+ ++.
T Consensus        80 k~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~--~~~~V~dvm~~~~~~  155 (450)
T TIGR01302        80 KRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD--KGKPVSEVMTREEVI  155 (450)
T ss_pred             ccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc--CCCCHHHhhCCCCCE
Confidence            456888988  89999999999999999999999999999987   79999999999985422  23456667762 321


Q ss_pred             ---------chHHHH-----hhhc-eeeCCcEEEEEehhhHHHHHH
Q 028824          159 ---------STWKVC-----EKCL-SFENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       159 ---------~~~~~~-----~~ll-v~~~g~lvGiVt~~DI~~~L~  189 (203)
                               ...+.+     ..++ ++++|+++|+||.+|++..+.
T Consensus       156 ~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       156 TVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             EECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence                     112222     2233 456899999999999966543

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.76  E-value=7.7e-08  Score=69.92  Aligned_cols=91  Identities=18%  Similarity=0.144  Sum_probs=67.2

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCcc-----c----hH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEVD-----S----TW  161 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v~-----~----~~  161 (203)
                      ++++++.+.++.++++.|.+.+...++|+|+ |+++|+++.+|+++.....   ....+.++|.....     .    ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence            5678899999999999999999999999997 8999999999998654221   22345556654322     1    11


Q ss_pred             HHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          162 KVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       162 ~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      +.+     ..+++.++|+++|+|+..|++
T Consensus        81 ~~~~~~~~~~~~Vv~~~~~~G~it~~dl~  109 (111)
T cd04589          81 LLMTRHRIHRVVVREGGEVVGVLEQTDLL  109 (111)
T ss_pred             HHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence            222     336666779999999999984

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.76  E-value=8.8e-08  Score=69.27  Aligned_cols=85  Identities=24%  Similarity=0.326  Sum_probs=63.5

Q ss_pred             EEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc---------chHHHH--
Q 028824           96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD---------STWKVC--  164 (203)
Q Consensus        96 ~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~---------~~~~~~--  164 (203)
                      .++++++++.++++.|.+.+++.+||+|+ |+++|+|+.+|+++...    ..+.++|.+...         ...+.+  
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~----~~~~~~~~~~~~~v~~~~~l~~a~~~~~~   78 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY----GDVVDYIVRGIPYVRLTSTAEEAWEVMMK   78 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc----cchhhhhhcCCcEEcCCCCHHHHHHHHHH
Confidence            56789999999999999999999999997 99999999999986432    123344443322         122222  


Q ss_pred             ---hhhceeeCCcEEEEEehhhHH
Q 028824          165 ---EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       165 ---~~llv~~~g~lvGiVt~~DI~  185 (203)
                         ..+++.++|+++|+++..|++
T Consensus        79 ~~~~~~~Vv~~~~~iGvit~~dl~  102 (104)
T cd04594          79 NKTRWCPVVDDGKFKGIVTLDSIL  102 (104)
T ss_pred             cCcceEEEEECCEEEEEEEHHHhh
Confidence               235666789999999999984

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.76  E-value=8e-08  Score=69.74  Aligned_cols=91  Identities=23%  Similarity=0.258  Sum_probs=66.1

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCcc-----c----hH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEVD-----S----TW  161 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v~-----~----~~  161 (203)
                      ++.+++.+.++.++.+.|.+++++.+||+|+ |+++|+|+..|+++.....   ....+.++|.....     .    ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHHH
Confidence            5788999999999999999999999999997 9999999999998632211   12234455543321     1    12


Q ss_pred             HHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          162 KVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       162 ~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      +.+     ..+++.++|+++|+++..|++
T Consensus        81 ~~~~~~~~~~~~Vv~~~~~~Giit~~di~  109 (111)
T cd04800          81 LLMLERGIHHLPVVDDGRLVGVISATDLL  109 (111)
T ss_pred             HHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence            222     335665569999999999994

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.76  E-value=7.9e-08  Score=68.94  Aligned_cols=88  Identities=22%  Similarity=0.366  Sum_probs=65.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc---------chHHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD---------STWKVC  164 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~---------~~~~~~  164 (203)
                      ++.++++++++.++++.|.+++...+||+| +|+++|+++..|+.++..   ...+.++|.+...         ...+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~---~~~~~~~~~~~~~~v~~~~~l~~~~~~~   77 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP---NRLVADAMTREVVTISPEASLLEAKRLM   77 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc---cCCHHHHccCCCEEECCCCCHHHHHHHH
Confidence            577899999999999999999999999998 599999999999986431   2234445543321         122222


Q ss_pred             -----hhhceeeCCcEEEEEehhhHH
Q 028824          165 -----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       165 -----~~llv~~~g~lvGiVt~~DI~  185 (203)
                           ..+++.++|+++|+|+..|++
T Consensus        78 ~~~~~~~~~Vv~~~~~~G~it~~~l~  103 (105)
T cd04599          78 EEKKIERLPVLRERKLVGIITKGTIA  103 (105)
T ss_pred             HHcCCCEeeEEECCEEEEEEEHHHhc
Confidence                 335666669999999999983

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.76  E-value=8.1e-08  Score=69.59  Aligned_cols=91  Identities=22%  Similarity=0.296  Sum_probs=66.0

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-CCCccccCccCCcc---------chHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFPEVD---------STWKV  163 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~~v~---------~~~~~  163 (203)
                      ++.++++++++.++++.|.+++++.+||+|+ |+++|+++.+|+++..... ....+.++|.....         ...+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~   80 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAIRL   80 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHHHH
Confidence            6788999999999999999999999999998 9999999999999754321 11234445543221         12222


Q ss_pred             H-----hhhceee-CCcEEEEEehhhHH
Q 028824          164 C-----EKCLSFE-NYICLGSLSLKFLT  185 (203)
Q Consensus       164 ~-----~~llv~~-~g~lvGiVt~~DI~  185 (203)
                      +     ..+++.+ +|+++|+|+..|++
T Consensus        81 ~~~~~~~~~~V~~~~~~~~G~i~~~dl~  108 (110)
T cd04588          81 MNKHNVGRLIVTDDEGRPVGIITRTDIL  108 (110)
T ss_pred             HHhcCCCEEEEECCCCCEEEEEEhHHhh
Confidence            2     2345544 58999999999984

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.75  E-value=6.8e-08  Score=70.97  Aligned_cols=91  Identities=26%  Similarity=0.291  Sum_probs=66.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCC-CcEEEEEeCCCeEEEEEehHHHhhchhh------cCCCccccCccCCccc-------
Q 028824           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSI------SGSGRADNSMFPEVDS-------  159 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~-~~~lPVvd~~g~lvGiVt~~Dll~~~~~------~~~~~v~~~m~~~v~~-------  159 (203)
                      ++.++++++++.++++.|.+.+ ++.+||+|+ |+++|+|+..|++++...      .....+.++|......       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~   80 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL   80 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence            5678899999999999998887 899999998 999999999999864321      1233466666554321       


Q ss_pred             --hHHHHh---------hhceeeCCcEEEEEehhhHH
Q 028824          160 --TWKVCE---------KCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       160 --~~~~~~---------~llv~~~g~lvGiVt~~DI~  185 (203)
                        ....+.         .++++++|+++|+|+..|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~  117 (119)
T cd04598          81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL  117 (119)
T ss_pred             HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence              112221         12566789999999999984

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.74  E-value=1.9e-08  Score=85.33  Aligned_cols=72  Identities=19%  Similarity=0.317  Sum_probs=63.8

Q ss_pred             cceEecccc----cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSA----APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l----~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      -|.++..++    .+-....+|+|+|.+  +++++++|+.+.||+++|..++++++.|+|.+|+++|+||..|++...
T Consensus       215 vGiit~~dI~~aia~g~~~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i  290 (294)
T COG2524         215 VGIITLSDIAKAIANGNLDAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI  290 (294)
T ss_pred             EEEEEHHHHHHHHHcCCccccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence            677886665    333456899999999  999999999999999999999999999999999999999999999643

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.74  E-value=3.8e-08  Score=91.46  Aligned_cols=103  Identities=16%  Similarity=0.123  Sum_probs=76.6

Q ss_pred             ccccccccC-CCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccC--Cc
Q 028824           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFP--EV  157 (203)
Q Consensus        84 ~V~diM~~~-~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~--~v  157 (203)
                      +|+++|... .+.+++++++++.+|++.|.+++++.+||+|+   +|+++|+||.+||.... ......+.++|.+  ++
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-~~~~~~V~dIMt~~~~~  173 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-MSLDTKVKDFMTPFEKL  173 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-cCCCCCHHHHhCCCCCe
Confidence            577777521 14579999999999999999999999999996   58999999999997532 2334568888885  22


Q ss_pred             c---------chHHHH-----hhhceee-CCcEEEEEehhhHHHH
Q 028824          158 D---------STWKVC-----EKCLSFE-NYICLGSLSLKFLTFL  187 (203)
Q Consensus       158 ~---------~~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~  187 (203)
                      .         ...+.+     ..+++.+ +++++|+||.+|++..
T Consensus       174 itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        174 VTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence            1         112222     3456554 6899999999999554

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.74  E-value=3.3e-08  Score=91.29  Aligned_cols=106  Identities=18%  Similarity=0.187  Sum_probs=81.4

Q ss_pred             cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCC
Q 028824           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (203)
Q Consensus        77 ~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~  156 (203)
                      .+....+++.++|.+  +++++.+++++.++++.|.+++++.+||+|+ ++++|+||.+|+....   ....+.++|..+
T Consensus        82 ae~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~~---~~~~V~dIMt~~  155 (475)
T TIGR01303        82 KQTVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGVD---RFTQVRDIMSTD  155 (475)
T ss_pred             HHHHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcCC---CCCCHHHHccCC
Confidence            455677889999998  8999999999999999999999999999884 7999999999997542   224577778765


Q ss_pred             ccc---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHH
Q 028824          157 VDS---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       157 v~~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L  188 (203)
                      +..         ..+.+     ..+++. ++|+++|+|+.+|++...
T Consensus       156 litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~  202 (475)
T TIGR01303       156 LVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRAT  202 (475)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            431         11222     234544 479999999999995533

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.73  E-value=6.9e-08  Score=71.00  Aligned_cols=92  Identities=27%  Similarity=0.323  Sum_probs=66.5

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh------------cCCCccccCccCCcc---
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI------------SGSGRADNSMFPEVD---  158 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~------------~~~~~v~~~m~~~v~---  158 (203)
                      ++.++++++++.+|++.|.+.+++.+||+|++|+++|+|+..|+.+....            .....+.++|.....   
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~   81 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVH   81 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEEC
Confidence            57889999999999999999999999999988999999999999864321            111234444443322   


Q ss_pred             --c----hHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          159 --S----TWKVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       159 --~----~~~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                        .    ..+.+     ..+++.++|+++|+++..|++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~  119 (121)
T cd04584          82 PLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL  119 (121)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhh
Confidence              1    12222     235565569999999999993

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.72  E-value=1.2e-07  Score=69.38  Aligned_cols=91  Identities=24%  Similarity=0.272  Sum_probs=65.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-------------CCCccccCccCCcc--
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------GSGRADNSMFPEVD--  158 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-------------~~~~v~~~m~~~v~--  158 (203)
                      ++.+++++.++.++++.|.+.++..+||+|+ |+++|+++..|+++.....             ....+.++|..+..  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence            5788999999999999999999999999997 9999999999999754221             01234445544321  


Q ss_pred             ---c----hHHHH-----hhhceee-CCcEEEEEehhhHH
Q 028824          159 ---S----TWKVC-----EKCLSFE-NYICLGSLSLKFLT  185 (203)
Q Consensus       159 ---~----~~~~~-----~~llv~~-~g~lvGiVt~~DI~  185 (203)
                         .    ....+     ..+++.+ +|+++|+|+..|++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~  120 (122)
T cd04585          81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF  120 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhh
Confidence               1    12222     2344544 58999999999994

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.72  E-value=6.2e-08  Score=71.49  Aligned_cols=92  Identities=18%  Similarity=0.300  Sum_probs=65.2

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh------------cCCCccccCccCCcc---
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI------------SGSGRADNSMFPEVD---  158 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~------------~~~~~v~~~m~~~v~---  158 (203)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++....            .....+.++|.....   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence            67889999999999999999999999999988999999999999864210            012223344433221   


Q ss_pred             --c----hHHHH-----hhhc-eeeCCcEEEEEehhhHH
Q 028824          159 --S----TWKVC-----EKCL-SFENYICLGSLSLKFLT  185 (203)
Q Consensus       159 --~----~~~~~-----~~ll-v~~~g~lvGiVt~~DI~  185 (203)
                        .    ..+.+     ..++ ++++|+++|+++..|++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~  120 (122)
T cd04635          82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL  120 (122)
T ss_pred             CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhh
Confidence              1    12222     2234 34568999999999993

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.71  E-value=7.2e-08  Score=89.34  Aligned_cols=101  Identities=25%  Similarity=0.268  Sum_probs=76.9

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCcc-CCcc----
Q 028824           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF-PEVD----  158 (203)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~-~~v~----  158 (203)
                      .++++|.+  ++.++++++++.++++.|.+++++.+||+|++|+++|+|+.+|+.....  ....+.++|. .++.    
T Consensus        88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~--~~~~V~dim~~~~~v~v~~  163 (486)
T PRK05567         88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD--LSQPVSEVMTKERLVTVPE  163 (486)
T ss_pred             hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc--CCCcHHHHcCCCCCEEECC
Confidence            57889988  8999999999999999999999999999999999999999999975321  2335666665 2221    


Q ss_pred             -----chHHHH-----hhhc-eeeCCcEEEEEehhhHHHHH
Q 028824          159 -----STWKVC-----EKCL-SFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       159 -----~~~~~~-----~~ll-v~~~g~lvGiVt~~DI~~~L  188 (203)
                           ...+.+     ..++ ++++|+++|+|+.+|++..+
T Consensus       164 ~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        164 GTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence                 112222     2234 44689999999999996554

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.71  E-value=4e-08  Score=71.32  Aligned_cols=70  Identities=30%  Similarity=0.452  Sum_probs=61.2

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++........+.++|..  ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+++
T Consensus        38 ~G~v~~~~l~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          38 VGIVTSKDVAGKDPDTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             EEEecHHHHhcccccccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            677777776444345679999987  8999999999999999999999999999998899999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.71  E-value=8.9e-08  Score=89.11  Aligned_cols=101  Identities=14%  Similarity=0.093  Sum_probs=76.5

Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccCC--cc--
Q 028824           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPE--VD--  158 (203)
Q Consensus        86 ~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~--v~--  158 (203)
                      +..|.+  +++++.+++++.++++.|.+++++.+||+|+   +|+++|+||.+|+....  ....++.++|.+.  +.  
T Consensus       103 ~~gmi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--~~~~~V~eIMt~~~~lvtv  178 (505)
T PLN02274        103 RVGFVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--DRETKLSEVMTSDDDLVTA  178 (505)
T ss_pred             cccccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--ccCCcHHHHhccCCCcEEE
Confidence            334777  8999999999999999999999999999987   48999999999997543  2345677888754  21  


Q ss_pred             -------chHHHH-----hhhcee-eCCcEEEEEehhhHHHHHHH
Q 028824          159 -------STWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       159 -------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~a  190 (203)
                             ...+.+     ..+++. ++++++|+|+++|++..+..
T Consensus       179 ~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        179 PAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                   122222     335554 57899999999999666654

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.71  E-value=3.7e-08  Score=83.61  Aligned_cols=97  Identities=27%  Similarity=0.293  Sum_probs=74.0

Q ss_pred             ccccccccccCCC-eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh--cCCCccccCccCCcc
Q 028824           82 VYTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--SGSGRADNSMFPEVD  158 (203)
Q Consensus        82 ~~~V~diM~~~~~-~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~--~~~~~v~~~m~~~v~  158 (203)
                      -++|+++|.+  + +.++.+++++.++++.|.+.+++.+||+|++|+++|+|+..|+.+....  .....+.++|.++..
T Consensus       154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~  231 (268)
T TIGR00393       154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK  231 (268)
T ss_pred             hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence            4799999988  7 8999999999999999999999999999988999999999999875322  123456677765442


Q ss_pred             c---------hHHHH-----hhhcee-eCCcEEEEEe
Q 028824          159 S---------TWKVC-----EKCLSF-ENYICLGSLS  180 (203)
Q Consensus       159 ~---------~~~~~-----~~llv~-~~g~lvGiVt  180 (203)
                      .         ..+.+     ..++|. ++|+++|+|.
T Consensus       232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            1         12222     345555 4689999984

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.70  E-value=1.4e-07  Score=69.51  Aligned_cols=91  Identities=19%  Similarity=0.208  Sum_probs=65.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-------------CCCccccCccCCcc--
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------GSGRADNSMFPEVD--  158 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-------------~~~~v~~~m~~~v~--  158 (203)
                      ++.++.+++++.++++.|.++++..+||+|+ |+++|+++..|+++.....             ....+.++|.....  
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI   80 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence            5788999999999999999999999999996 9999999999998643211             12234444543221  


Q ss_pred             -------chHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          159 -------STWKVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       159 -------~~~~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                             .....+     ..+++.++|+++|+|+..|++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~  119 (121)
T cd04633          81 EPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL  119 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence                   122222     335555559999999999994

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.70  E-value=5.3e-08  Score=70.79  Aligned_cols=71  Identities=20%  Similarity=0.370  Sum_probs=61.8

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      .|.++.+++.......++.++|.+  ++.++.+++++.++++.|.+++...+||+|++|+++|+||..|+++.
T Consensus        38 ~G~v~~~~l~~~~~~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          38 LGVVSLRDLLLADPDTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             EEEEEHHHHhcCCCcchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            678887777443345679999987  89999999999999999999999999999988999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.70  E-value=1.6e-07  Score=68.22  Aligned_cols=91  Identities=27%  Similarity=0.329  Sum_probs=65.2

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---C-CccccCccCCcc---------ch
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---S-GRADNSMFPEVD---------ST  160 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~-~~v~~~m~~~v~---------~~  160 (203)
                      ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+|+..|+++.....+   . ..+.++|.....         ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~   80 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEA   80 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHH
Confidence            5778999999999999999999999999997 99999999999974322111   1 334455544322         12


Q ss_pred             HHHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824          161 WKVC-----EKCLSF-ENYICLGSLSLKFLT  185 (203)
Q Consensus       161 ~~~~-----~~llv~-~~g~lvGiVt~~DI~  185 (203)
                      .+.+     ..+++. ++|+++|+|+..|++
T Consensus        81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~  111 (113)
T cd04587          81 LHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT  111 (113)
T ss_pred             HHHHHHcCCCcccEECCCCCEEEEEEHHHhc
Confidence            2222     234554 468999999999993

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.70  E-value=1.6e-07  Score=67.95  Aligned_cols=91  Identities=24%  Similarity=0.285  Sum_probs=65.5

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCC--CccccCccCCcc---------chHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS--GRADNSMFPEVD---------STWK  162 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~--~~v~~~m~~~v~---------~~~~  162 (203)
                      ++.++++++++.++++.|.+.+++.+||+|+ |+++|+++.+|+.+.......  ..+.+.|..+..         ...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDALK   80 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHHHH
Confidence            6788999999999999999999999999998 999999999999875432111  023344443321         1222


Q ss_pred             HH-----hhhceee-CCcEEEEEehhhHH
Q 028824          163 VC-----EKCLSFE-NYICLGSLSLKFLT  185 (203)
Q Consensus       163 ~~-----~~llv~~-~g~lvGiVt~~DI~  185 (203)
                      .+     ..+++.+ +|+++|+|+..|++
T Consensus        81 ~~~~~~~~~~~V~~~~~~~~G~it~~di~  109 (111)
T cd04612          81 RMAERDIGRLPVVDDSGRLVGIVSRSDLL  109 (111)
T ss_pred             HHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence            22     2355544 59999999999993

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.69  E-value=1.3e-07  Score=69.02  Aligned_cols=84  Identities=20%  Similarity=0.267  Sum_probs=64.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccCCc---------cchH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV---------DSTW  161 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v---------~~~~  161 (203)
                      ....+.+++++.++.+.+.+.++..+||+|+   +|+++|+|+.+|+.+....        +|..+.         ....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------~m~~~~~~v~~~~~l~~~~   74 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------YIDPSPFTVSPRTSLEKVH   74 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH--------hccCCCceECCCCcHHHHH
Confidence            5678899999999999999999999999998   6999999999999865432        222211         1122


Q ss_pred             HHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          162 KVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       162 ~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      +.+     ..+++.++|+++|+|+.+|++
T Consensus        75 ~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~  103 (105)
T cd04591          75 QLFRKLGLRHLLVVDEGRLVGIITRKDLL  103 (105)
T ss_pred             HHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence            222     346666899999999999993

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.68  E-value=7.2e-08  Score=69.39  Aligned_cols=70  Identities=24%  Similarity=0.461  Sum_probs=60.6

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.+...++........++++|..  .+.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+++
T Consensus        37 ~g~v~~~~l~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          37 VGIVSARDLLGKDPDETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             EEEEEHHHhhccCccccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            677777776443345579999987  7899999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.68  E-value=2e-07  Score=67.42  Aligned_cols=91  Identities=23%  Similarity=0.287  Sum_probs=65.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc--CCCccccCccCCcc---------chHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--GSGRADNSMFPEVD---------STWK  162 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~--~~~~v~~~m~~~v~---------~~~~  162 (203)
                      ++.++++++++.++++.|.+.+...+||+|+ |+++|+++.+|+++.....  ....+.++|.....         ...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~   80 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDARQ   80 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHHHH
Confidence            5778999999999999999999999999987 9999999999998754221  22345555543321         1222


Q ss_pred             HH-----hhhcee-eCCcEEEEEehhhHH
Q 028824          163 VC-----EKCLSF-ENYICLGSLSLKFLT  185 (203)
Q Consensus       163 ~~-----~~llv~-~~g~lvGiVt~~DI~  185 (203)
                      .+     ..+++. ++|+++|+|+..|++
T Consensus        81 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~  109 (111)
T cd04611          81 LMREHGIRHLVVVDDDGELLGLLSQTDLL  109 (111)
T ss_pred             HHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence            22     124444 458999999999984

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.67  E-value=6.2e-08  Score=71.02  Aligned_cols=69  Identities=22%  Similarity=0.347  Sum_probs=59.4

Q ss_pred             cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.++.+++..       .....++.++|.+  ++.++++++++.++++.|.+++...+||+|+ |+++|+|+..|+++
T Consensus        38 ~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          38 YGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             EEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            57888777632       2234679999987  8999999999999999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.67  E-value=6.9e-08  Score=69.71  Aligned_cols=90  Identities=33%  Similarity=0.431  Sum_probs=65.1

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCc------c----chHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV------D----STWKV  163 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v------~----~~~~~  163 (203)
                      ++.++..++++.++++.|.+++...+||+|++|+++|+|+.+|++....  ....+.++|....      .    .....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~l~~~~~~   80 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD--LDKPVSEVMTPENLLTTVEGTSLEEALEL   80 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc--CCCCHHHhcccCceEEecCCCCHHHHHHH
Confidence            6788999999999999999999999999998899999999999875422  2223444443221      1    11222


Q ss_pred             H-----hhhcee-eCCcEEEEEehhhHH
Q 028824          164 C-----EKCLSF-ENYICLGSLSLKFLT  185 (203)
Q Consensus       164 ~-----~~llv~-~~g~lvGiVt~~DI~  185 (203)
                      +     ..+++. ++|+++|+|+.+|++
T Consensus        81 ~~~~~~~~~~Vv~~~~~~~Gvi~~~dil  108 (110)
T cd04601          81 LHEHKIEKLPVVDDEGKLKGLITVKDIE  108 (110)
T ss_pred             HHHhCCCeeeEEcCCCCEEEEEEhhhhh
Confidence            2     224444 469999999999984

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.66  E-value=7.1e-08  Score=89.58  Aligned_cols=101  Identities=22%  Similarity=0.149  Sum_probs=76.2

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC---CeEEEEEehHHHhhchhhcCCCccccCccC--Cccc
Q 028824           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFP--EVDS  159 (203)
Q Consensus        85 V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~---g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~--~v~~  159 (203)
                      .++.|..  +++++++++++.+++++|.+++++.+||+|++   ++++|+|+.+|+....  ....++.++|.+  ++..
T Consensus        98 ~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diMt~~~~lvt  173 (495)
T PTZ00314         98 FENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVMTPREKLVV  173 (495)
T ss_pred             ccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhhCCcCCceE
Confidence            6678887  89999999999999999999999999999874   8999999999997432  234467777875  3211


Q ss_pred             ---------hHHHH-----hhhce-eeCCcEEEEEehhhHHHHHH
Q 028824          160 ---------TWKVC-----EKCLS-FENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       160 ---------~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~  189 (203)
                               ..+.+     ..+++ +++++++|+||.+|++....
T Consensus       174 v~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        174 GNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG  218 (495)
T ss_pred             eCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence                     12222     23444 46789999999999955443

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.66  E-value=8.3e-08  Score=70.43  Aligned_cols=90  Identities=24%  Similarity=0.296  Sum_probs=65.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccCCcc-------c----
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD-------S----  159 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~-------~----  159 (203)
                      ++.++.+++++.++++.|.++++..+||+|+   +|+++|+|+.+|++....  ....+.++|.....       .    
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~--~~~~v~~~~~~~~~~~~~~~~~~l~~   80 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD--SETPLSEVMTPREVLVVAPTGITLEE   80 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc--cCCCHHHhcCCCceEEECCCCCCHHH
Confidence            4678899999999999999999999999997   789999999999975322  22335556653221       1    


Q ss_pred             hHHHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824          160 TWKVC-----EKCLSF-ENYICLGSLSLKFLT  185 (203)
Q Consensus       160 ~~~~~-----~~llv~-~~g~lvGiVt~~DI~  185 (203)
                      ..+.+     ..+++. ++|+++|+|+.+|++
T Consensus        81 ~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~  112 (114)
T cd04602          81 ANEILRESKKGKLPIVNDDGELVALVTRSDLK  112 (114)
T ss_pred             HHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence            12222     234544 578999999999984

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.66  E-value=2.7e-07  Score=67.04  Aligned_cols=91  Identities=22%  Similarity=0.326  Sum_probs=65.0

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc-hhh--c-CCCccccCccCCcc---------ch
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL-DSI--S-GSGRADNSMFPEVD---------ST  160 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~-~~~--~-~~~~v~~~m~~~v~---------~~  160 (203)
                      ++.++++++++.++.+.|.+++++.+||+|+ |+++|+++..|++.. ...  . ....+.++|.....         ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEA   80 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHH
Confidence            5788999999999999999999999999997 999999999998732 111  1 11125555544322         12


Q ss_pred             HHHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824          161 WKVC-----EKCLSF-ENYICLGSLSLKFLT  185 (203)
Q Consensus       161 ~~~~-----~~llv~-~~g~lvGiVt~~DI~  185 (203)
                      .+.+     ..+++. ++|+++|+|+..|++
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~  111 (113)
T cd04622          81 ARLMREHQVRRLPVVDDDGRLVGIVSLGDLA  111 (113)
T ss_pred             HHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence            2222     234454 458999999999993

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.65  E-value=2.8e-07  Score=66.96  Aligned_cols=91  Identities=22%  Similarity=0.244  Sum_probs=65.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc----CCCccccCccCCcc---------ch
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----GSGRADNSMFPEVD---------ST  160 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~----~~~~v~~~m~~~v~---------~~  160 (203)
                      ++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++.....    ....+.++|.+...         ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEA   80 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHH
Confidence            5778999999999999999999999999996 5999999999998743211    12344555544321         11


Q ss_pred             HHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          161 WKVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       161 ~~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                      .+.+     ..+++.++++++|+|+..|++
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~  110 (112)
T cd04802          81 AKLMAKHGIKRLPVVDDDELVGIVTTTDIV  110 (112)
T ss_pred             HHHHHHcCCCeeEEeeCCEEEEEEEhhhhh
Confidence            2222     235565556999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.65  E-value=4.8e-08  Score=71.04  Aligned_cols=86  Identities=27%  Similarity=0.211  Sum_probs=61.0

Q ss_pred             EcCCCCHHHHHHHHHHCC-----CcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc-----c----hHHH
Q 028824           98 VKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD-----S----TWKV  163 (203)
Q Consensus        98 v~~~~ti~ea~~~m~~~~-----~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~-----~----~~~~  163 (203)
                      +.+++++.++++.|.+++     +..+||+|++|+++|+|+.+|+++..   ....+.+++.+...     .    ..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~---~~~~v~~~~~~~~~~i~~~~~~~~~~~~   78 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD---PDTPVSDIMDTDVISVSADDDQEEVARL   78 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC---CcchHHHHhCCCCeEEcCCCCHHHHHHH
Confidence            578899999999998877     47899999889999999999998642   22334555544321     1    1222


Q ss_pred             H-----hhhce-eeCCcEEEEEehhhHHH
Q 028824          164 C-----EKCLS-FENYICLGSLSLKFLTF  186 (203)
Q Consensus       164 ~-----~~llv-~~~g~lvGiVt~~DI~~  186 (203)
                      +     ..+++ +++|+++|+|+..|++.
T Consensus        79 ~~~~~~~~~~Vv~~~~~~~Gvit~~dll~  107 (109)
T cd04606          79 FEKYDLLALPVVDEEGRLVGIITVDDVID  107 (109)
T ss_pred             HHHcCCceeeeECCCCcEEEEEEhHHhhh
Confidence            2     23444 45799999999999954

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.64  E-value=6.6e-08  Score=71.91  Aligned_cols=55  Identities=29%  Similarity=0.482  Sum_probs=51.7

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .+++++|.+  ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..||.+
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            679999988  8999999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.64  E-value=3.3e-07  Score=65.21  Aligned_cols=92  Identities=28%  Similarity=0.409  Sum_probs=64.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCc---cccCccCCcc---------chH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR---ADNSMFPEVD---------STW  161 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~---v~~~m~~~v~---------~~~  161 (203)
                      ++.+++.+.++.++++.|.+.+...+||+|++++++|+++.+|+...........   +.++|..+..         ...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAA   81 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHHHH
Confidence            5778999999999999999999999999998899999999999997543221111   2233333221         112


Q ss_pred             HHH-----hhhce-eeCCcEEEEEehhhHH
Q 028824          162 KVC-----EKCLS-FENYICLGSLSLKFLT  185 (203)
Q Consensus       162 ~~~-----~~llv-~~~g~lvGiVt~~DI~  185 (203)
                      ..+     ..+++ +++++++|+++.+|++
T Consensus        82 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~  111 (113)
T cd02205          82 ELMLEHGIRRLPVVDDEGRLVGIVTRSDIL  111 (113)
T ss_pred             HHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence            222     22333 4569999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.64  E-value=2.4e-07  Score=67.62  Aligned_cols=95  Identities=27%  Similarity=0.431  Sum_probs=70.6

Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCC--ccccCccCCcc------
Q 028824           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG--RADNSMFPEVD------  158 (203)
Q Consensus        87 diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~--~v~~~m~~~v~------  158 (203)
                      ++|.+  ++.++.++.++.+|...|.++++..+||++. ++++|+||.+|+.++.......  .+.++|..+..      
T Consensus         3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~~~   79 (117)
T COG0517           3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDPDT   79 (117)
T ss_pred             ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECCCC
Confidence            34445  7999999999999999999999999999984 4899999999999876543322  36666764321      


Q ss_pred             ---chHH------HHhhhceeeCC--cEEEEEehhhH
Q 028824          159 ---STWK------VCEKCLSFENY--ICLGSLSLKFL  184 (203)
Q Consensus       159 ---~~~~------~~~~llv~~~g--~lvGiVt~~DI  184 (203)
                         ...+      ....+++.+++  +++|+++..|+
T Consensus        80 ~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di  116 (117)
T COG0517          80 PLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI  116 (117)
T ss_pred             CHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence               1111      12345665544  99999999997

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.64  E-value=1.1e-07  Score=68.09  Aligned_cols=68  Identities=28%  Similarity=0.449  Sum_probs=60.6

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHh
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll  138 (203)
                      .|.++.+++........+.++|.+  ++.++++++++.++++.|.+++...+||+|+ |+++|+||.+|++
T Consensus        36 ~Giv~~~~l~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          36 VGIITSRDVRRAHPNRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             EEEEehHHhhcccccCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence            688888887554455679999988  8999999999999999999999999999997 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.63  E-value=1.5e-07  Score=68.86  Aligned_cols=91  Identities=15%  Similarity=0.259  Sum_probs=63.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCC-CcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCcc--------c--
Q 028824           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEVD--------S--  159 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~-~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v~--------~--  159 (203)
                      ++.++.++.++.++++.|.+++ ...++|+| +|+++|+|+..|++++....   ....+.++|.....        .  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~   80 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF   80 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence            5678999999999999998888 66777777 58999999999998753221   12344455543321        1  


Q ss_pred             -hHHHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824          160 -TWKVC-----EKCLSF-ENYICLGSLSLKFLT  185 (203)
Q Consensus       160 -~~~~~-----~~llv~-~~g~lvGiVt~~DI~  185 (203)
                       ....+     ..+++. ++|+++|+|+.+|++
T Consensus        81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~  113 (115)
T cd04620          81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR  113 (115)
T ss_pred             HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence             11122     234444 568999999999994

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.63  E-value=1.5e-07  Score=69.50  Aligned_cols=91  Identities=25%  Similarity=0.215  Sum_probs=64.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-------------CCCccccCccCCcc--
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------GSGRADNSMFPEVD--  158 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-------------~~~~v~~~m~~~v~--  158 (203)
                      ++.++++++++.++++.|.+++++.+||+|+ |+++|+++..|+++.....             ....+.++|..+..  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV   80 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence            5788999999999999999999999999996 9999999999998643210             01233444443321  


Q ss_pred             ---c----hHHHH-----hhhce-eeCCcEEEEEehhhHH
Q 028824          159 ---S----TWKVC-----EKCLS-FENYICLGSLSLKFLT  185 (203)
Q Consensus       159 ---~----~~~~~-----~~llv-~~~g~lvGiVt~~DI~  185 (203)
                         .    ..+.+     ..+++ +++|+++|+++..|++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll  120 (122)
T cd04637          81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL  120 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence               1    12222     22434 4568999999999994

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.62  E-value=2.4e-07  Score=71.25  Aligned_cols=47  Identities=38%  Similarity=0.580  Sum_probs=43.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ++.++++++++.++++.|.+.+++.+||+|+ |+++|+++..|+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~   48 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLL   48 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHH
Confidence            5788999999999999999999999999997 9999999999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.61  E-value=5.9e-08  Score=71.76  Aligned_cols=72  Identities=19%  Similarity=0.366  Sum_probs=58.7

Q ss_pred             cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC---CeEEEEEehHHHh
Q 028824           68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLL  138 (203)
Q Consensus        68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~---g~lvGiVt~~Dll  138 (203)
                      -|.++..++..      .....+++++|.+..++.++.+++++.++++.|.+++++.+||+|++   |+++|+||..|+.
T Consensus        37 ~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~  116 (118)
T cd04617          37 VGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             EEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence            57777666521      23356788999732268899999999999999999999999999977   6999999999987


Q ss_pred             h
Q 028824          139 A  139 (203)
Q Consensus       139 ~  139 (203)
                      +
T Consensus       117 ~  117 (118)
T cd04617         117 K  117 (118)
T ss_pred             c
Confidence            5

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.61  E-value=9.6e-08  Score=70.66  Aligned_cols=57  Identities=37%  Similarity=0.621  Sum_probs=52.5

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      ..++.++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..|++++
T Consensus        68 ~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~  124 (124)
T cd04600          68 PETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             cccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence            4478999988  89999999999999999999999999999988999999999999753

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.61  E-value=3.1e-08  Score=83.18  Aligned_cols=109  Identities=20%  Similarity=0.230  Sum_probs=85.5

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC-CCeEEEEEehHHHhhchhhc-CCCccccCccCCc
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSIS-GSGRADNSMFPEV  157 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~-~g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~~v  157 (203)
                      ..+++|+|+|.++...++++.+.++.+++..+.+...++|||+.+ .+.+.||+..+||++..... ....+.++..|.+
T Consensus        64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~lLRPav  143 (293)
T COG4535          64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLRPAV  143 (293)
T ss_pred             HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHhcccce
Confidence            456799999999888999999999999999999999999999964 46899999999999875443 2234555555543


Q ss_pred             c--------chHHHHh------hhceeeCCcEEEEEehhhHHHHH
Q 028824          158 D--------STWKVCE------KCLSFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       158 ~--------~~~~~~~------~llv~~~g~lvGiVt~~DI~~~L  188 (203)
                      .        ...++|+      .+++++.|.+.|.||.+||+..+
T Consensus       144 ~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqI  188 (293)
T COG4535         144 VVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQI  188 (293)
T ss_pred             ecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHH
Confidence            2        2234442      25677899999999999996554

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=1e-07  Score=69.75  Aligned_cols=70  Identities=23%  Similarity=0.404  Sum_probs=58.4

Q ss_pred             cceEecccccC------CCCccccccccccCCCeEEEcCC--CCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPT--TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~--~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++..      .....++.++|.+  ++.++.++  +++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus        37 ~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          37 LGIFTERDIVRLTAIGKDLSDLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             EEEEeHHHHHHHHhcCCCccccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            67787776532      1123578899987  78888887  78999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.59  E-value=1.4e-07  Score=68.93  Aligned_cols=70  Identities=27%  Similarity=0.377  Sum_probs=58.8

Q ss_pred             cceEecccccC-----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP-----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~-----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.++..++..     .....++.++|.+  .+.++.+++++.++++.|.+++...+||+|++|+++|+||.+|++.
T Consensus        38 ~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          38 LGTVTDGDIRRALLKGLSLDDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             EEEEEcHHHHHHHhcCCCcCCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            67777666421     2223578999987  7899999999999999999999999999998899999999999873

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.59  E-value=1.3e-07  Score=86.73  Aligned_cols=108  Identities=30%  Similarity=0.266  Sum_probs=84.0

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHC-----CCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccC
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS  152 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~-----~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~  152 (203)
                      -.+.+-+++.+|+.  ++++++++.|+.+++..+++.     .+..+.|+|++++++|+|+.++++..   .....+.++
T Consensus       127 l~y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a---~~~~~i~~i  201 (451)
T COG2239         127 LSYPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA---EPDELLKDL  201 (451)
T ss_pred             cCCChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC---CcHhHHHHH
Confidence            34566789999999  999999999999999999954     47899999999999999999999854   234466677


Q ss_pred             ccCCccc-----hHH----HHhh-----hc-eeeCCcEEEEEehhhHHHHHHH
Q 028824          153 MFPEVDS-----TWK----VCEK-----CL-SFENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       153 m~~~v~~-----~~~----~~~~-----ll-v~~~g~lvGiVt~~DI~~~L~a  190 (203)
                      |.+.+..     ..+    .+++     ++ ++++++++|+||..|++++++.
T Consensus       202 m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         202 MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence            7765321     111    2221     33 4568899999999999999875

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.58  E-value=5.1e-07  Score=64.88  Aligned_cols=88  Identities=28%  Similarity=0.398  Sum_probs=64.0

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc---------chHHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD---------STWKVC  164 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~---------~~~~~~  164 (203)
                      ++.+++.+.++.++++.|.+.+...+||+|+ ++++|+++..|++...   ....+.++|.....         ...+.+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~---~~~~~~~~~~~~~~~v~~~~~l~~~~~~~   78 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD---PDETVEEIMSKDLVVAVPEMDIMDAARVM   78 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC---ccccHHHhCCCCCeEECCCCCHHHHHHHH
Confidence            6788999999999999999888889999997 9999999999998531   12234444543221         122222


Q ss_pred             -----hhhce-eeCCcEEEEEehhhHH
Q 028824          165 -----EKCLS-FENYICLGSLSLKFLT  185 (203)
Q Consensus       165 -----~~llv-~~~g~lvGiVt~~DI~  185 (203)
                           ..+++ +++|+++|+++..|++
T Consensus        79 ~~~~~~~~~Vv~~~g~~~Gvi~~~di~  105 (107)
T cd04610          79 FRTGISKLPVVDENNNLVGIITNTDVI  105 (107)
T ss_pred             HHhCCCeEeEECCCCeEEEEEEHHHhh
Confidence                 23444 4578999999999994

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.58  E-value=1.5e-07  Score=68.50  Aligned_cols=70  Identities=21%  Similarity=0.364  Sum_probs=59.8

Q ss_pred             cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.++.+++..      .+...++.++|.+  ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+++
T Consensus        37 ~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          37 VGIITRYDVLSYALESEELKDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             EEEEEHHHHHHhhhhhhhhcCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            67777766532      1245678999987  8999999999999999999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.57  E-value=9.3e-08  Score=69.95  Aligned_cols=72  Identities=25%  Similarity=0.399  Sum_probs=58.7

Q ss_pred             cceEecccccCCC----CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPSS----GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~~----~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++....    ...++.++|.+...+.++.+++++.++++.|.+++.+.+||+|++|+++|+|+.+|+++
T Consensus        38 ~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          38 VGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             EEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            5788877763221    24578899975224678999999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.57  E-value=6.8e-07  Score=64.46  Aligned_cols=89  Identities=21%  Similarity=0.302  Sum_probs=64.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc---------chHHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD---------STWKVC  164 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~---------~~~~~~  164 (203)
                      ++.++..+.++.++++.|.+.+++.+||+|++|+++|+++.++++....   .....++|.....         .....+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~---~~~~~~~~~~~~~~v~~~~~l~~~~~~~   78 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE---EEQLALLMTRDPPTVSPDDDVKEAAKLM   78 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc---cchHHHHhcCCCceECCCCCHHHHHHHH
Confidence            5778899999999999999999999999998899999999999985321   1122333332211         122222


Q ss_pred             -----hhhceeeCCcEEEEEehhhHH
Q 028824          165 -----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       165 -----~~llv~~~g~lvGiVt~~DI~  185 (203)
                           ..+++.++|+++|+++..|++
T Consensus        79 ~~~~~~~~~Vvd~~~~~G~it~~d~~  104 (106)
T cd04638          79 VENNIRRVPVVDDGKLVGIVTVADIV  104 (106)
T ss_pred             HHcCCCEEEEEECCEEEEEEEHHHhh
Confidence                 235665678999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.57  E-value=1.7e-07  Score=67.58  Aligned_cols=70  Identities=24%  Similarity=0.470  Sum_probs=60.5

Q ss_pred             cceEecccccCC-CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPS-SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~-~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+...++... .....+.++|.+  ++.++++++++.++++.|.+.+...+||+|++|+++|+||.+|+++
T Consensus        38 ~G~v~~~dl~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          38 LGIVSLESLEQAYKEAKSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             EEEEEHHHHHHHhhcCCcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            688888776332 234578999987  8999999999999999999999999999998899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.56  E-value=2.3e-07  Score=82.43  Aligned_cols=112  Identities=19%  Similarity=0.170  Sum_probs=85.5

Q ss_pred             cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCCCc-------
Q 028824           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGR-------  148 (203)
Q Consensus        77 ~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~~~-------  148 (203)
                      .-.++.++|+|+|+++.++..++.+++.+++++.+.+..+.++||..++ ++++|++..+|++++........       
T Consensus       194 vLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~  273 (423)
T COG4536         194 VLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA  273 (423)
T ss_pred             ccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH
Confidence            3567889999999999899999999999999999999999999999543 67999999999999865443222       


Q ss_pred             -cccCccCCccch---HHHHhh------hceeeCCcEEEEEehhhHHHHH
Q 028824          149 -ADNSMFPEVDST---WKVCEK------CLSFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       149 -v~~~m~~~v~~~---~~~~~~------llv~~~g~lvGiVt~~DI~~~L  188 (203)
                       .+.++.|+-...   ...|++      ++++|+|.+.|+||.+||++-+
T Consensus       274 a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEI  323 (423)
T COG4536         274 ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEI  323 (423)
T ss_pred             hcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHH
Confidence             223333332222   223322      6788999999999999994443

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.55  E-value=2.4e-07  Score=67.32  Aligned_cols=69  Identities=29%  Similarity=0.382  Sum_probs=57.9

Q ss_pred             cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.++.+++..       .....++.++|..  ++.++.+++++.++++.|.+++...+||+| +|+++|+||.+|+++
T Consensus        36 ~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          36 VGLLTFREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             EEEEEHHHHHHHHHhcCCchhcCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            57777666531       1234579999987  789999999999999999999999999998 599999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.55  E-value=2e-07  Score=86.77  Aligned_cols=74  Identities=30%  Similarity=0.324  Sum_probs=64.2

Q ss_pred             cceEecccccC--CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAP--SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~--~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      -|+++..+++.  .....+|+++|++..+++++++++++.+|+++|.++++..+||+|++|+++|+||.+|+++..
T Consensus       144 vGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        144 LGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             EEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            68888888742  244678999999644789999999999999999999999999999889999999999999753

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.55  E-value=2.4e-07  Score=66.60  Aligned_cols=69  Identities=22%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++.... ...+.++|.+  .+.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+.+
T Consensus        37 ~Giv~~~dl~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          37 LGFVTRREAARAS-GGCCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             EEEEeHHHHHHhc-ccchhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            6888887774322 2358899987  7888999999999999999999999999998899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.55  E-value=1.9e-07  Score=67.53  Aligned_cols=70  Identities=31%  Similarity=0.421  Sum_probs=59.6

Q ss_pred             cceEecccccCC----C-CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPS----S-GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~----~-~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++...    . ...++.++|.+  ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus        36 ~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          36 LGIVTERDILRLLASGPDLQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             EEEEeHHHHHHHHhcCCCCCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            677877775221    1 45679999987  8999999999999999999999999999998899999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.54  E-value=1.4e-07  Score=70.63  Aligned_cols=70  Identities=24%  Similarity=0.297  Sum_probs=56.1

Q ss_pred             cceEecccccC------------CCCccccccccccCCCeEEE------cCCCCHHHHHHHHHHCCCcEEEEEeCC-CeE
Q 028824           68 SGTLTANSAAP------------SSGVYTVGDFMTTKEELHVV------KPTTTVDEALEILVEKRITGFPVIDDD-WKL  128 (203)
Q Consensus        68 ~g~~~~~~l~~------------~~~~~~V~diM~~~~~~~~v------~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~l  128 (203)
                      -|.+...++..            .....+++++|.+  ++..+      .+++++.++++.|.+++.+.+||+|++ |++
T Consensus        37 ~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~  114 (126)
T cd04640          37 IGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP--KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQI  114 (126)
T ss_pred             EEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEE
Confidence            57787777642            2245679999986  54333      368899999999999999999999987 799


Q ss_pred             EEEEehHHHhh
Q 028824          129 VGLVSDYDLLA  139 (203)
Q Consensus       129 vGiVt~~Dll~  139 (203)
                      +|+||.+|+++
T Consensus       115 ~G~it~~di~~  125 (126)
T cd04640         115 RGIISTSDIAR  125 (126)
T ss_pred             EEEEeHHHHhh
Confidence            99999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.52  E-value=2.1e-07  Score=67.47  Aligned_cols=69  Identities=35%  Similarity=0.582  Sum_probs=58.7

Q ss_pred             cceEecccccC----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.+...++..    .....++.++|.+  ++.++.+++++.++++.|.+++...+||+| +|+++|+||..|+++
T Consensus        37 ~G~v~~~dl~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          37 VGIISRRDVEKALRHGLGHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             EEEEEHHHHHHHHhcccccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            57777666521    2245679999988  899999999999999999999999999999 799999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.52  E-value=2.8e-07  Score=67.97  Aligned_cols=57  Identities=32%  Similarity=0.538  Sum_probs=52.1

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ...++.++|.+  ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            35578889987  8999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.51  E-value=2.8e-07  Score=66.92  Aligned_cols=70  Identities=27%  Similarity=0.348  Sum_probs=58.4

Q ss_pred             cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.++..++..       .....++.++|.+  ++.++.+++++.++++.|.+++...+||++++|+++|+|+..|++.
T Consensus        36 ~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          36 VGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             EEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            67777666521       1112578999987  8899999999999999999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.51  E-value=3.9e-07  Score=66.70  Aligned_cols=70  Identities=21%  Similarity=0.376  Sum_probs=58.5

Q ss_pred             cceEecccccCC------CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC--CeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPS------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~------~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~--g~lvGiVt~~Dll~  139 (203)
                      -|.+..+++...      ....++.++|.+  ++.++.+++++.++++.|.+++...+||+|++  |+++|+||.+|+++
T Consensus        37 ~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          37 VGIITLPDLLRALEADEAGEPSAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             EEEEEHHHHHHHHhcccccccccHHHhccC--CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            677877775321      123348889987  89999999999999999999999999999987  79999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=3.3e-07  Score=68.08  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=47.0

Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHh
Q 028824           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (203)
Q Consensus        86 ~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll  138 (203)
                      .++|..  ++.++++++++.+|++.|.+++...+||+|++|+++|+||..|+.
T Consensus        71 ~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          71 LTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             cccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            356776  899999999999999999999999999999889999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.50  E-value=2.8e-07  Score=85.33  Aligned_cols=73  Identities=29%  Similarity=0.383  Sum_probs=64.2

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .|+++.+++.......+++++|++  ++.++++++++.+|++.|.++++..+||+|++|+++|+||.+||++...
T Consensus       133 vGIVT~rDL~~~~~~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        133 VGVVTEADCAGVDRFTQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             EEEEeHHHHhcCccCCCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            588887777543344679999998  8999999999999999999999999999998899999999999997643

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.50  E-value=2.9e-07  Score=85.13  Aligned_cols=73  Identities=22%  Similarity=0.273  Sum_probs=65.1

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      -|+++.+++.......+++++|++  +++++++++++.+|+++|.++++..+||+|++|+++|+||.+||++...
T Consensus       131 vGIVT~rDL~~~~~~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       131 VGLVTDSDLLGVDRFTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI  203 (475)
T ss_pred             EEEEEHHHhhcCCCCCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence            688988888544455689999998  8999999999999999999999999999998899999999999997543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=4.4e-07  Score=65.89  Aligned_cols=70  Identities=37%  Similarity=0.515  Sum_probs=58.0

Q ss_pred             cceEeccccc-------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAA-------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~-------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++.       .......+.++|..  ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+++
T Consensus        36 ~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          36 VGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             EEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            5677766542       11223359999987  8999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=3e-07  Score=67.80  Aligned_cols=57  Identities=39%  Similarity=0.612  Sum_probs=52.4

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ...++.++|..  ++.++.+++++.++++.|.+.+...+||+|++|+++|+||..|++.
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            45678999987  8999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.50  E-value=3e-07  Score=67.27  Aligned_cols=56  Identities=39%  Similarity=0.748  Sum_probs=51.8

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ..++.++|.+  ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            3578899988  8999999999999999999999999999998899999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.49  E-value=3.6e-07  Score=66.26  Aligned_cols=69  Identities=35%  Similarity=0.473  Sum_probs=58.3

Q ss_pred             cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++..      .....++.++|..  ++.++++++++.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus        36 ~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          36 VGIVTDRDLRNRVVAEGLDPDTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             EEEEEhHHHHHHHhccCCCccCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            67777666522      1234679999987  8999999999999999999999999999987 99999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.49  E-value=5e-07  Score=65.14  Aligned_cols=70  Identities=33%  Similarity=0.424  Sum_probs=57.0

Q ss_pred             cceEecccccC-CCCccccccccccCCCeEEEcC-CCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKP-TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~-~~~~~~V~diM~~~~~~~~v~~-~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.+..+++.. ......+.++|..  .+..+.. ++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus        38 ~G~v~~~~l~~~~~~~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          38 VGIVTNRDLRFETDLDKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             EEEEEhhHeeecccCCCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            56677666521 2234678999977  6676666 999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=3.6e-07  Score=66.41  Aligned_cols=69  Identities=35%  Similarity=0.561  Sum_probs=58.6

Q ss_pred             cceEecccccC--------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP--------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~--------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.++.+++..        .....++.++|.+  ++.++.+++++.++++.|.+++...+||+|+ |+++|+||.+|+++
T Consensus        37 ~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          37 VGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             EEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            67787766531        1235678999987  7899999999999999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.48  E-value=3.5e-07  Score=84.00  Aligned_cols=72  Identities=17%  Similarity=0.309  Sum_probs=64.3

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.+..+++.....+.+++++|++  ++.++.+++++.++++.|.++++..+||+|++|+++|+||.+|+++..
T Consensus       180 ~GvV~l~dLl~a~~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l  251 (449)
T TIGR00400       180 KGVLSIRDLILAKPEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVI  251 (449)
T ss_pred             EEEEEHHHHhcCCCCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHH
Confidence            688888887444456789999998  899999999999999999999999999999999999999999999764

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.47  E-value=3e-07  Score=68.07  Aligned_cols=56  Identities=41%  Similarity=0.723  Sum_probs=51.6

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ..++.++|.+  ++.++++++++.++++.|.+.+...+||+|++|+++|+||..|+++
T Consensus        69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            3478899987  8999999999999999999999999999998799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.47  E-value=4.2e-07  Score=66.62  Aligned_cols=70  Identities=30%  Similarity=0.385  Sum_probs=57.2

Q ss_pred             cceEecccccC-CCCccccccccccCCCeEEEcC--CCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKP--TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~-~~~~~~V~diM~~~~~~~~v~~--~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++.. ......++++|..  +..++..  ++++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus        41 ~G~v~~~dl~~~~~~~~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          41 LGIVTSRDIDFLTDSETPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             EEEEEhHHhhhhhccCCCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            67777766531 1123568899987  6777755  999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.47  E-value=3.1e-07  Score=66.60  Aligned_cols=70  Identities=26%  Similarity=0.375  Sum_probs=58.9

Q ss_pred             cceEecccccC----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.+...++..    ......+.++|..  ++.++.+++++.++++.|.+++...+||+|++|+++|+||..|+..
T Consensus        37 ~G~v~~~~l~~~~~~~~~~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          37 VGLLTRDDLIRALAEGGPDAPVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             EEEeeHHHHHHHHHhcCCCCcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            57777666522    1234579999987  8999999999999999999999999999998799999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.47  E-value=4.1e-07  Score=65.93  Aligned_cols=59  Identities=22%  Similarity=0.326  Sum_probs=49.9

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~  139 (203)
                      -|.++.+++...         +    .+.++.+++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++
T Consensus        38 ~Givt~~Dl~~~---------~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          38 VGMLTITDFILI---------L----RLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             EEEEEHHHHhhh---------e----eeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            577776666321         1    16789999999999999999999999999987 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.46  E-value=3.9e-07  Score=65.79  Aligned_cols=70  Identities=36%  Similarity=0.528  Sum_probs=58.5

Q ss_pred             cceEecccccCCCC-----ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPSSG-----VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~~~-----~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+...++.....     ...+.++|.+  ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+.+
T Consensus        36 ~G~v~~~dl~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          36 VGIVTLADIRRVPAEGREATVLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             EEEEEHHHHHHHHhcCcccccCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            57777777632111     1267889988  8999999999999999999999999999998899999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.46  E-value=4.3e-07  Score=79.30  Aligned_cols=71  Identities=25%  Similarity=0.347  Sum_probs=60.5

Q ss_pred             cceEeccccc-----CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAA-----PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~-----~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      -|.++..++.     ......+++++|++  ++.++.+++++.+|++.|.+++...+||+|++|+++|+||.+|++++
T Consensus       243 iG~vt~~dl~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        243 QGVFTDGDLRRWLVGGGALTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             EEEecHHHHHHHHhCCCCcCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            5777755542     12234568999998  89999999999999999999999999999988999999999999975

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.45  E-value=5.9e-07  Score=65.16  Aligned_cols=70  Identities=33%  Similarity=0.478  Sum_probs=58.2

Q ss_pred             cceEeccccc------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAA------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+...++.      ......++.++|.+  ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..||++
T Consensus        38 ~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          38 VGIFTDGDLRRALEKGLDILTLPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             EEEechHHHHHHHhccCccccCCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            5677755532      11223479999988  7899999999999999999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.44  E-value=3.2e-07  Score=69.39  Aligned_cols=56  Identities=38%  Similarity=0.481  Sum_probs=51.6

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+||.+|+++
T Consensus        79 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          79 HGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             cCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            34678999987  899999999999999999999999999999 899999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=6.1e-07  Score=66.35  Aligned_cols=46  Identities=20%  Similarity=0.478  Sum_probs=43.5

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            5789999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.44  E-value=6.4e-07  Score=64.84  Aligned_cols=70  Identities=30%  Similarity=0.474  Sum_probs=59.7

Q ss_pred             cceEecccccC-----C-CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC-CCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP-----S-SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~-----~-~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~-~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++..     . ....++.++|.+  ++.++.+++++.++++.|.+.+...+||+|+ +|+++|+|+.+|++.
T Consensus        37 ~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          37 VGIVSLDDIREILFDPSLYDLVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             EEEEEHHHHHHHHhcccccccEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            67788777631     1 123679999988  8999999999999999999999999999997 799999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=6.9e-07  Score=64.58  Aligned_cols=69  Identities=35%  Similarity=0.511  Sum_probs=58.0

Q ss_pred             cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.+..+++..       .....++.++|.+  ++.++.++.++.++++.|.+.+...+||+++ |+++|+|+.+|+++
T Consensus        37 ~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          37 VGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             EEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            67777766521       1124579999987  8999999999999999999999999999987 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=5.5e-07  Score=65.36  Aligned_cols=69  Identities=33%  Similarity=0.465  Sum_probs=57.8

Q ss_pred             cceEecccccCC-----CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPS-----SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~-----~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++...     .....+.++|.+  ++.++.+++++.++++.|.+++...+||+|+ |+++|+||..|++.
T Consensus        37 ~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          37 KGVVTFTDILDLDLFESFLEKKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             EEEEehHHhHHHHhhcccccCcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            577777775321     113478899987  8999999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=6.1e-07  Score=68.57  Aligned_cols=55  Identities=31%  Similarity=0.583  Sum_probs=50.7

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ..+++++|.+  ++.++.+++++.++++.|.+++...+||+++ |+++|+||..|+++
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            4579999987  8899999999999999999999999999986 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.42  E-value=6.4e-07  Score=78.48  Aligned_cols=70  Identities=26%  Similarity=0.307  Sum_probs=60.5

Q ss_pred             cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      .|.++.+++..      .+...+|+++|++  ++.++.+++++.+|++.|.+++++.+||+| +|+++|+||..|++++
T Consensus       248 vGivt~~Dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        248 EGIFTDGDLRRVFDMGIDLRQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             EEEEecHHHHHHHhcCCCcccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            68888776531      2335689999998  899999999999999999999999999998 5899999999999864

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=4.1e-07  Score=66.36  Aligned_cols=68  Identities=25%  Similarity=0.428  Sum_probs=55.3

Q ss_pred             cceEecccccCCC-----------CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHH
Q 028824           68 SGTLTANSAAPSS-----------GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD  136 (203)
Q Consensus        68 ~g~~~~~~l~~~~-----------~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~D  136 (203)
                      -|.+..+++....           ...++.++|.+  ++.++.+++++.++++.|.+.+  .+||+|++|+++|+||..|
T Consensus        37 ~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~d  112 (116)
T cd04643          37 VGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRRE  112 (116)
T ss_pred             EEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHH
Confidence            5777766652111           14578999988  8999999999999999998865  5999998899999999999


Q ss_pred             Hhh
Q 028824          137 LLA  139 (203)
Q Consensus       137 ll~  139 (203)
                      +++
T Consensus       113 il~  115 (116)
T cd04643         113 ILK  115 (116)
T ss_pred             hhc
Confidence            975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.41  E-value=8.6e-07  Score=64.02  Aligned_cols=68  Identities=25%  Similarity=0.376  Sum_probs=57.9

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.+..+++... ...++.++|.+  ++.+++++.++.++++.|.+++...+||+| +|+++|+||.+|+..
T Consensus        36 ~G~v~~~~l~~~-~~~~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          36 LGAVYLKDIENA-TYGDVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             EEEEEHHHHhhh-cccchhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            678887776432 23458889987  789999999999999999999999999998 699999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.41  E-value=7.8e-07  Score=64.36  Aligned_cols=70  Identities=21%  Similarity=0.413  Sum_probs=58.6

Q ss_pred             cceEecccccCC--CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPS--SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~--~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.++.+++...  .....+.++|.+  ++.++.+++++.++++.|.+++...+||++++|+++|+|+..|+.+
T Consensus        38 ~G~v~~~~l~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          38 VGIVTSWDISKAVARDKKSVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             EEEEeHHHHHHHHhhCccCHHHhcCC--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            677877776211  122358899987  8999999999999999999999999999998899999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.41  E-value=1.3e-07  Score=71.16  Aligned_cols=71  Identities=20%  Similarity=0.202  Sum_probs=58.7

Q ss_pred             cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHH---------HCCCcEEEEEeCCCeEEEEE
Q 028824           68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILV---------EKRITGFPVIDDDWKLVGLV  132 (203)
Q Consensus        68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~---------~~~~~~lPVvd~~g~lvGiV  132 (203)
                      .|.+..+++..      .....+++++|++  ++.++.+++++.++++++.         +.+...+||+|++|+++|+|
T Consensus        38 ~Gii~~~dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Giv  115 (124)
T cd04608          38 LGMVTLGNLLSSLSSGKVQPSDPVSKALYK--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIV  115 (124)
T ss_pred             EEEEEHHHHHHHHHHhccCCCCcHHHHhhc--cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEE
Confidence            68888777632      3456799999998  8999999999999999653         33678889999889999999


Q ss_pred             ehHHHhhc
Q 028824          133 SDYDLLAL  140 (203)
Q Consensus       133 t~~Dll~~  140 (203)
                      |.+|++++
T Consensus       116 t~~Dl~~~  123 (124)
T cd04608         116 TKIDLLSY  123 (124)
T ss_pred             ehhHhhhh
Confidence            99999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.40  E-value=6.5e-07  Score=64.98  Aligned_cols=69  Identities=26%  Similarity=0.334  Sum_probs=58.4

Q ss_pred             cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++..      .....++.++|.+  ++.++++++++.++++.|.+++...+||+|+ |+++|+||..|+++
T Consensus        36 ~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          36 LGIVTRTDLLDAVLLDGLPSSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             EEEEEHHHHHHHHHcCCCCCCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            67787776532      1234578899987  8999999999999999999999999999985 89999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.38  E-value=1.3e-06  Score=63.25  Aligned_cols=70  Identities=21%  Similarity=0.368  Sum_probs=58.2

Q ss_pred             cceEecccccC----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++..    ......+.++|..  ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus        36 ~G~v~~~~l~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          36 VGIVTLSDIAHAIARGLELAKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             EEEEEHHHHHHHHhccccccCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            57777666521    1222568899987  8999999999999999999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=9.1e-07  Score=64.20  Aligned_cols=70  Identities=29%  Similarity=0.368  Sum_probs=58.9

Q ss_pred             cceEecccccC-----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP-----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~-----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.++.+++..     ......+.++|.+  ++.++.+++++.++++.|.+++...+||+|++|+++|+||..|+++
T Consensus        37 ~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          37 IGIVTERDIVRAVAAGIDLDTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             EEEeeHHHHHHHHhccCCCccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            67777766521     1234578899987  8999999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.37  E-value=9e-07  Score=64.49  Aligned_cols=69  Identities=38%  Similarity=0.612  Sum_probs=58.7

Q ss_pred             cceEecccccCCCCc----c-ccccccccCCCeEEEcCCCCHHHHHHHHHH-CCCcEEEEEeCCC-eEEEEEehHHHh
Q 028824           68 SGTLTANSAAPSSGV----Y-TVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDW-KLVGLVSDYDLL  138 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~----~-~V~diM~~~~~~~~v~~~~ti~ea~~~m~~-~~~~~lPVvd~~g-~lvGiVt~~Dll  138 (203)
                      .|.++..++......    . .+.++|+.  ++.++.++.++.++.+.|.+ +++..+||+|+++ +++|++|..|++
T Consensus        42 ~Giit~~di~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          42 VGIITERDILRALAAGGKRLLPVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             EEEEEHHHHHHHHhccCCccccHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            788888887333221    1 58999998  89999999999999999999 7999999999886 999999999973

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.36  E-value=1e-06  Score=76.38  Aligned_cols=76  Identities=32%  Similarity=0.369  Sum_probs=65.2

Q ss_pred             ccccccceEecccccC-----------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEE
Q 028824           63 SAVFASGTLTANSAAP-----------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (203)
Q Consensus        63 ~~~~~~g~~~~~~l~~-----------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGi  131 (203)
                      .+.. .|+++..++.+           -...-+++.+|++  .+.++.++++..|++-.+.+.+...+||+|++|+++||
T Consensus       285 ~~rl-~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGI  361 (382)
T COG3448         285 HRRL-VGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGI  361 (382)
T ss_pred             ccce-eeeeeHHHHhhccCcchHHHhhccCCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEE
Confidence            3444 67777777644           2356789999998  79999999999999999999999999999999999999


Q ss_pred             EehHHHhhch
Q 028824          132 VSDYDLLALD  141 (203)
Q Consensus       132 Vt~~Dll~~~  141 (203)
                      ||..|++.+.
T Consensus       362 vsQtDliaal  371 (382)
T COG3448         362 VSQTDLIAAL  371 (382)
T ss_pred             eeHHHHHHHH
Confidence            9999999754

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.36  E-value=1.5e-06  Score=62.57  Aligned_cols=69  Identities=32%  Similarity=0.462  Sum_probs=58.0

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.+..+++........+.++|..  ++.++.+++++.++++.|.+++...+||+|+ |+++|+|+.+|+++
T Consensus        37 ~g~v~~~~l~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          37 VGIITRKDLLRNPEEEQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             EEEEEHHHHHhccccchHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            577777776433334567888987  7899999999999999999999999999984 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.36  E-value=1.3e-06  Score=63.39  Aligned_cols=69  Identities=30%  Similarity=0.588  Sum_probs=58.0

Q ss_pred             cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++..       .....++.++|.+  ++.++.+++++.++++.|.+++...+||+|++ +++|+|+.+|+++
T Consensus        36 ~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          36 VGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             EEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            67787766532       1234678999987  89999999999999999999999999999865 9999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.33  E-value=1.5e-06  Score=63.83  Aligned_cols=56  Identities=38%  Similarity=0.595  Sum_probs=51.2

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ...++.++|..  ++.++.+++++.++++.|.+++...+||+|+ |+++|+|+.+|+++
T Consensus        65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            34678899988  8999999999999999999999999999986 99999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.33  E-value=1.4e-06  Score=65.61  Aligned_cols=54  Identities=35%  Similarity=0.581  Sum_probs=50.2

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .++.++|.+  ++..+.+++++.++++.|.+.+...+||+|+ |+++|+||..|+++
T Consensus        78 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          78 KKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            378899987  8999999999999999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.32  E-value=1.3e-06  Score=77.22  Aligned_cols=72  Identities=22%  Similarity=0.342  Sum_probs=69.0

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++..+....++..+|++  +++++.+.+++..+.+.|.-.++.-+||+|++.+++|+||..|+++..
T Consensus       234 vGvVt~rDv~~~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~l  305 (432)
T COG4109         234 VGVVTMRDVLDKKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSL  305 (432)
T ss_pred             EEEEEehhhhcCCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHH
Confidence            789999999999999999999999  999999999999999999999999999999999999999999999764

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.32  E-value=1.8e-06  Score=64.49  Aligned_cols=51  Identities=22%  Similarity=0.420  Sum_probs=46.7

Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        87 diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      +.|..  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            46666  7899999999999999999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.32  E-value=1.4e-06  Score=81.21  Aligned_cols=75  Identities=20%  Similarity=0.321  Sum_probs=63.8

Q ss_pred             cceEecccccC-CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~~-~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .|.++.+++.. .....+|.++|++..+++++.+++++.+|++.|.++++..+||+|++++++|+||.+||++...
T Consensus       147 vGIVT~~DL~~v~~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        147 LGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             EEEEEHHHHhhccccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            67888777732 2345789999997223889999999999999999999999999999999999999999997654

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.31  E-value=1e-06  Score=63.85  Aligned_cols=69  Identities=22%  Similarity=0.240  Sum_probs=55.6

Q ss_pred             cceEecccccCC----CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPS----SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~----~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.++.+++...    .....+.++|.   ++.++.+++++.++++.|.+++...+||+|++|+++|+||..|+++
T Consensus        38 ~G~v~~~~l~~~~~~~~~~~~~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          38 IGVVHVKDLLRALAEGEEDLDLRDLLR---PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             EEEEEHHHHHHHHHcCCCcCCHHHHhc---CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            677877665221    11135667663   5889999999999999999999999999998899999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=1.5e-06  Score=63.94  Aligned_cols=56  Identities=38%  Similarity=0.657  Sum_probs=51.3

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ...++.++|..  ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+|+..|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            35578899987  8999999999999999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=1.7e-06  Score=63.76  Aligned_cols=55  Identities=36%  Similarity=0.582  Sum_probs=51.1

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ..+.++|.+  ++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            468899987  8999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=2.1e-06  Score=61.71  Aligned_cols=45  Identities=36%  Similarity=0.540  Sum_probs=42.8

Q ss_pred             eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        95 ~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      +.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            788999999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.28  E-value=1.2e-06  Score=63.90  Aligned_cols=64  Identities=19%  Similarity=0.367  Sum_probs=54.2

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.+..+++......     +|.+  ++.++++++++.++++.|.+++...+||++ +|+++|+||.+|+++
T Consensus        41 ~G~v~~~dl~~~~~~-----~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          41 VGYILRSQLVVALKN-----YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             EEEEeHHHHHHHHHH-----hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            688887776322211     8887  899999999999999999999999999995 789999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.28  E-value=1.7e-06  Score=80.39  Aligned_cols=74  Identities=31%  Similarity=0.395  Sum_probs=63.9

Q ss_pred             cceEecccccC-CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~-~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|+++.+++.. .....+++++|++.+++++++++.++.|++++|.++++..+||+|++++++|+||.+||++..
T Consensus       143 vGIVt~~DL~~~~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        143 LGIVTSRDIDFVKDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             EEEEEHHHHhhcccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence            68888888732 234568999998655789999999999999999999999999999999999999999999763

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.24  E-value=3.4e-06  Score=64.83  Aligned_cols=49  Identities=29%  Similarity=0.367  Sum_probs=45.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|++++..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~   50 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF   50 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence            5789999999999999999999999999999999999999999997643

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.22  E-value=4.6e-06  Score=50.46  Aligned_cols=46  Identities=41%  Similarity=0.710  Sum_probs=42.0

Q ss_pred             eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        95 ~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      +.++.+++++.++++.|.++++..+||++++++++|+++..++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            5678999999999999999999999999988999999999998753

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.21  E-value=3.3e-06  Score=62.95  Aligned_cols=56  Identities=27%  Similarity=0.432  Sum_probs=50.1

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEe--CCCeEEEEEehHHHhh
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLA  139 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd--~~g~lvGiVt~~Dll~  139 (203)
                      ...+.++|.+  +++++.+++++.++++.|.+++...+||++  ++|+++|+||.+|+++
T Consensus        70 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            3568899987  899999999999999999999999999984  4689999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.21  E-value=2.7e-06  Score=78.97  Aligned_cols=73  Identities=26%  Similarity=0.326  Sum_probs=65.9

Q ss_pred             cceEecccc------cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSA------APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l------~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|+++.+++      ..+..+.+|+++|+.  +++++..++-+.||+-.|.++++.++||++ +|+++|+||..||+++.
T Consensus       193 ~GIvT~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         193 LGIVTRKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF  269 (610)
T ss_pred             cceeehHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence            679998887      355677899999999  999999999999999999999999999997 69999999999999876


Q ss_pred             hh
Q 028824          142 SI  143 (203)
Q Consensus       142 ~~  143 (203)
                      ..
T Consensus       270 s~  271 (610)
T COG2905         270 SQ  271 (610)
T ss_pred             CC
Confidence            54

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.20  E-value=2.9e-06  Score=79.99  Aligned_cols=72  Identities=21%  Similarity=0.343  Sum_probs=61.0

Q ss_pred             cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC--CeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~--g~lvGiVt~~Dll~  139 (203)
                      .|.++.+++..      .....++.|+|++  ++.++++++++.++++.|.+++.+.+||+|++  ++++|+||.+|+++
T Consensus       491 vGiVt~~dL~~~l~~~~~~~~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~  568 (574)
T PRK01862        491 RGAVALKDITSDLLDKRDTTDKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLD  568 (574)
T ss_pred             EEEEEHHHHHHHhhcccccccchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHH
Confidence            68888777633      1123578999988  89999999999999999999999999999876  58999999999997


Q ss_pred             ch
Q 028824          140 LD  141 (203)
Q Consensus       140 ~~  141 (203)
                      ..
T Consensus       569 ~l  570 (574)
T PRK01862        569 AY  570 (574)
T ss_pred             HH
Confidence            54

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.19  E-value=2.8e-06  Score=79.61  Aligned_cols=59  Identities=29%  Similarity=0.540  Sum_probs=55.1

Q ss_pred             CCccccccccc-cCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           80 SGVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        80 ~~~~~V~diM~-~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      ....+|+++|+ +  ++.++++++++.++.+.|.+++++.+||+|++|+++|+||.+|+++.
T Consensus       243 ~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~  302 (546)
T PRK14869        243 NQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSP  302 (546)
T ss_pred             hcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcc
Confidence            45678999999 6  89999999999999999999999999999999999999999999964

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.17  E-value=3.5e-06  Score=78.96  Aligned_cols=57  Identities=33%  Similarity=0.462  Sum_probs=53.5

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      ..+|+|+|.+  ++.++++++++.+|++.|.+++++.+||+|++|+++|+|+..|+.+.
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~  123 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARA  123 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence            3689999998  89999999999999999999999999999989999999999999864

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.16  E-value=4.6e-06  Score=76.72  Aligned_cols=72  Identities=31%  Similarity=0.436  Sum_probs=62.7

Q ss_pred             cceEecccccC-CCCccccccccc-cCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAP-SSGVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~-~~~~~~V~diM~-~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      -|.++.+++.. .....+++++|+ .  ++.++++++++.++++.|.+++...+||+|++|+++|+||.+||++..
T Consensus       127 vGIVt~rDL~~~~~~~~~V~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       127 VGIITKRDIRFVKDKGKPVSEVMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             EEEEEHHHHhhhhcCCCCHHHhhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            68888888732 223567999998 4  799999999999999999999999999999999999999999999764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.15  E-value=3.7e-06  Score=61.58  Aligned_cols=70  Identities=16%  Similarity=0.241  Sum_probs=56.4

Q ss_pred             cceEecccccCC---------CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCc---EEEEEeCCCeEEEEEehH
Q 028824           68 SGTLTANSAAPS---------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT---GFPVIDDDWKLVGLVSDY  135 (203)
Q Consensus        68 ~g~~~~~~l~~~---------~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~---~lPVvd~~g~lvGiVt~~  135 (203)
                      .|.+..+++...         .....+.++|.+  ++.++.+++++.++++.|.+++..   ..+|++++|+++|+|+..
T Consensus        37 ~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~  114 (119)
T cd04598          37 VGLIMREALMELLSTPYGRALYGKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVK  114 (119)
T ss_pred             EEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHH
Confidence            577776665211         135679999988  899999999999999999988753   446888889999999999


Q ss_pred             HHhh
Q 028824          136 DLLA  139 (203)
Q Consensus       136 Dll~  139 (203)
                      |+++
T Consensus       115 di~~  118 (119)
T cd04598         115 DLLR  118 (119)
T ss_pred             HHhc
Confidence            9874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.13  E-value=4e-06  Score=60.24  Aligned_cols=68  Identities=25%  Similarity=0.367  Sum_probs=54.1

Q ss_pred             cceEecccccCC----C--CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAPS----S--GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~~----~--~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      -|.++.+++...    .  ....+.++|.+  ++.++++++++.+++++|.+ . ..+||++++|+++|+||.+|+++
T Consensus        36 ~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          36 VGSIDESDLLDALIEGKAKFSLPVREVMGE--PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             EEEEeHHHHHHHHhccccccCcCHHHHhcC--CCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence            678887775221    1  13578899987  78999999999999999988 3 34788988899999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.07  E-value=1.1e-05  Score=57.27  Aligned_cols=53  Identities=43%  Similarity=0.771  Sum_probs=49.0

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        85 V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      +.++|..  ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus        60 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC--CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            5678887  8999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.05  E-value=1.2e-05  Score=74.75  Aligned_cols=72  Identities=35%  Similarity=0.492  Sum_probs=62.1

Q ss_pred             cceEeccccc-CCCCccccccccc-cCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAA-PSSGVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~-~~~~~~~V~diM~-~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++. ......++.++|+ +  +++++.+++++.++++.|.+++++.+||+|++|+++|+||.+||++..
T Consensus       131 vGiVt~~DL~~~~~~~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        131 VGIITNRDVRFETDLSQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             EEEEEHHHhhhcccCCCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence            6888888773 2223457999998 5  789999999999999999999999999999999999999999999754

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.00  E-value=1.4e-05  Score=67.80  Aligned_cols=64  Identities=33%  Similarity=0.401  Sum_probs=54.5

Q ss_pred             cceEecccccC-----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEe
Q 028824           68 SGTLTANSAAP-----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS  133 (203)
Q Consensus        68 ~g~~~~~~l~~-----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt  133 (203)
                      -|.++.+++..     .....+++++|.+  ++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus       200 ~Givt~~dl~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       200 VGVFTDGDLRRALLGGGSLKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             EEEEEcHHHHHHHhcCCcccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            57787766522     1235679999988  8999999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.98  E-value=9.3e-06  Score=74.64  Aligned_cols=71  Identities=17%  Similarity=0.340  Sum_probs=65.9

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      .|.+..+.+.....+..++++|.+  +++++.+++..+++++.+.+++.-.+||+|++++++|+||..|+...
T Consensus       181 ~Gvvsl~~Ll~a~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidv  251 (451)
T COG2239         181 LGVVSLRDLLTAEPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDV  251 (451)
T ss_pred             EEEeeHHHHhcCCcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHH
Confidence            788888888767778899999998  89999999999999999999999999999999999999999999965

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.96  E-value=2.5e-05  Score=59.91  Aligned_cols=55  Identities=31%  Similarity=0.642  Sum_probs=50.3

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ...+.++|..  ++.++.+++++.++++.|.+.+...+||+++ |+++|+|+.+|++.
T Consensus        88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            4568889987  8999999999999999999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=97.95  E-value=1.7e-05  Score=69.02  Aligned_cols=74  Identities=26%  Similarity=0.291  Sum_probs=60.9

Q ss_pred             cccccceEecccccCC----CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           64 AVFASGTLTANSAAPS----SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        64 ~~~~~g~~~~~~l~~~----~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ... -|.+..+++...    .....+.++|.+   +.++++++++.++++.|.+++...+||+|+.|.++|+||.+||+.
T Consensus       111 d~i-iGiv~~kDll~~~~~~~~~~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle  186 (292)
T PRK15094        111 DHI-EGILMAKDLLPFMRSDAEAFSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILE  186 (292)
T ss_pred             CcE-EEEEEHHHHHhHhhccCCcCCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHH
Confidence            345 788888777321    123458899976   568999999999999999999999999999899999999999997


Q ss_pred             ch
Q 028824          140 LD  141 (203)
Q Consensus       140 ~~  141 (203)
                      ..
T Consensus       187 ~i  188 (292)
T PRK15094        187 LI  188 (292)
T ss_pred             HH
Confidence            53

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.92  E-value=4.1e-05  Score=69.13  Aligned_cols=97  Identities=27%  Similarity=0.378  Sum_probs=68.5

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCc-----cc------cCccCCc-----
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR-----AD------NSMFPEV-----  157 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~-----v~------~~m~~~v-----  157 (203)
                      ++..+.+++++.+|++.|.+++++.+||+|++|+.+|.++..|+...........     +.      ..-+..+     
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~  317 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRP  317 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEee
Confidence            5889999999999999999999999999999999999999999996543321111     11      0111111     


Q ss_pred             -cchHHHH--------hhh-ceeeCCcEEEEEehhhHHHHHHH
Q 028824          158 -DSTWKVC--------EKC-LSFENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       158 -~~~~~~~--------~~l-lv~~~g~lvGiVt~~DI~~~L~a  190 (203)
                       .+.++.+        .++ +++++|.++|+|+..|++..+..
T Consensus       318 ~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~  360 (381)
T KOG1764|consen  318 TSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL  360 (381)
T ss_pred             cchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence             1122222        223 44556999999999999776664

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.86  E-value=3.7e-05  Score=69.95  Aligned_cols=86  Identities=19%  Similarity=0.132  Sum_probs=67.8

Q ss_pred             cccccccccccCCccccccceEecccccCCC--CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCe
Q 028824           50 ATSSDRVSALRRSSAVFASGTLTANSAAPSS--GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK  127 (203)
Q Consensus        50 ~~~~~~~~~~r~~~~~~~~g~~~~~~l~~~~--~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~  127 (203)
                      ++|..||-.  ++.... -|.+..+++....  ...++.++|.+   +.++++++++.++++.|.+++.+..+|+|+.|.
T Consensus       223 ~~sR~PV~~--~~~d~i-vGiv~~kDll~~~~~~~~~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~  296 (408)
T TIGR03520       223 GYSRIPVYK--ETIDNI-TGVLYIKDLLPHLNKKNFDWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGG  296 (408)
T ss_pred             CCCEEEEEc--CCCCce-EEEEEHHHHHhHhccCCCCHHHHcCC---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCC
Confidence            344444543  344556 8999988884222  23457888865   789999999999999999999999999999899


Q ss_pred             EEEEEehHHHhhch
Q 028824          128 LVGLVSDYDLLALD  141 (203)
Q Consensus       128 lvGiVt~~Dll~~~  141 (203)
                      .+|+||.+||+...
T Consensus       297 ~~GiVT~eDileei  310 (408)
T TIGR03520       297 TSGLVTLEDIIEEI  310 (408)
T ss_pred             EEEEEEHHHHHHHH
Confidence            99999999999753

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.64  E-value=8.2e-05  Score=67.11  Aligned_cols=90  Identities=26%  Similarity=0.258  Sum_probs=73.8

Q ss_pred             ccccccccccccCCccccccceEecccc-cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCe
Q 028824           49 LATSSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK  127 (203)
Q Consensus        49 ~~~~~~~~~~~r~~~~~~~~g~~~~~~l-~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~  127 (203)
                      -+|+..|+.---.-+... -|+++.+++ ..+-....+.++|++  +.++.+.+.+++++-+++.+++...+||+|++|+
T Consensus       137 ~gF~g~pvTe~g~~~~KL-vG~vtsrdi~f~~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~ge  213 (503)
T KOG2550|consen  137 HGFSGIPVTEDGKRGSKL-VGIITSRDIQFLEDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGE  213 (503)
T ss_pred             ccccccccccCCccccee-EEEEehhhhhhhhcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCc
Confidence            456667766433344555 789998888 334556789999999  6789999999999999999999999999999999


Q ss_pred             EEEEEehHHHhhch
Q 028824          128 LVGLVSDYDLLALD  141 (203)
Q Consensus       128 lvGiVt~~Dll~~~  141 (203)
                      +|-+|+..||.+..
T Consensus       214 lva~~~rtDl~k~~  227 (503)
T KOG2550|consen  214 LVAMLSRTDLMKNR  227 (503)
T ss_pred             eeeeeehhhhhhhc
Confidence            99999999999753

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.54  E-value=0.00017  Score=64.76  Aligned_cols=72  Identities=22%  Similarity=0.362  Sum_probs=57.7

Q ss_pred             cceEecccccCC-CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAAPS-SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~~~-~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .|.+..+.+... .....+.+.|..  .+.++.+++++.+++..|.+++.. +||+|++|+++|+|+..+++++..
T Consensus       286 ~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       286 VGVVDVESIKQARKKAQGLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             EEEEeHHHHHHHhhcCCchhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            455555554221 123357788877  788999999999999999999998 999999999999999999997653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.51  E-value=0.00018  Score=65.79  Aligned_cols=68  Identities=16%  Similarity=0.290  Sum_probs=54.0

Q ss_pred             cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      -|.++.+++..      .....++.++|.+  ++.++++++++.++++.|.+++   .+||+++|+++|+||.+||+++
T Consensus       379 ~Givt~~dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~  452 (454)
T TIGR01137       379 LGSVTLRELLSALFAGKANPDDAVSKVMSK--KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF  452 (454)
T ss_pred             EEEEEHHHHHHHHhccCCCcCCCHHHhcCC--CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence            67888777632      2234579999988  8899999999999999998764   3555557999999999999864

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.50  E-value=0.00011  Score=66.20  Aligned_cols=89  Identities=28%  Similarity=0.282  Sum_probs=69.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccCCccc-----hH----
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS-----TW----  161 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~~-----~~----  161 (203)
                      +++++.++.++.++++....+++..+||.++   ..||+|+||.+|+-..  ......+.++|.+....     ..    
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~--~~~~~~~~~vmt~~~~~~~~gi~l~~~n  194 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL--EDNSLLVSDVMTKNPVTGAQGITLKEAN  194 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh--hcccchhhhhcccccccccccccHHHHH
Confidence            5789999999999999999999999999964   3689999999999765  34556777888775421     11    


Q ss_pred             HHH-----hhh-ceeeCCcEEEEEehhhH
Q 028824          162 KVC-----EKC-LSFENYICLGSLSLKFL  184 (203)
Q Consensus       162 ~~~-----~~l-lv~~~g~lvGiVt~~DI  184 (203)
                      +.+     .++ +++++|.+|-+|+++|+
T Consensus       195 eiL~~~kkGkl~iv~~~gelva~~~rtDl  223 (503)
T KOG2550|consen  195 EILKKIKKGKLPVVDDKGELVAMLSRTDL  223 (503)
T ss_pred             HHHHhhhcCCcceeccCCceeeeeehhhh
Confidence            111     224 45678999999999999

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.49  E-value=0.00018  Score=57.41  Aligned_cols=83  Identities=22%  Similarity=0.297  Sum_probs=62.2

Q ss_pred             ccccccccccccCCccccccceEeccccc-------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEE
Q 028824           49 LATSSDRVSALRRSSAVFASGTLTANSAA-------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV  121 (203)
Q Consensus        49 ~~~~~~~~~~~r~~~~~~~~g~~~~~~l~-------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPV  121 (203)
                      .++|-.||...    .. .-|.++.+++-       +.....+|+++|..  .+.+++++.++..+-.++.++  ..+.|
T Consensus        94 ~g~SQlPVi~~----~k-~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e--~fP~Vs~~~~l~vI~~LL~~~--~AVlV  164 (187)
T COG3620          94 KGISQLPVIEE----DK-VVGSITENDIVRALLEGMESIRSLRVREVMGE--PFPTVSPDESLNVISQLLEEH--PAVLV  164 (187)
T ss_pred             cCCccCceeeC----Ce-eeeeecHHHHHHHHhccccchhhhhHHHHhcC--CCCcCCCCCCHHHHHHHHhhC--CeEEE
Confidence            44555555543    11 26777766551       45677899999988  899999999998888877765  45777


Q ss_pred             EeCCCeEEEEEehHHHhhch
Q 028824          122 IDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus       122 vd~~g~lvGiVt~~Dll~~~  141 (203)
                      + ++|+++||||..|+++..
T Consensus       165 ~-e~G~~vGIITk~DI~k~~  183 (187)
T COG3620         165 V-ENGKVVGIITKADIMKLL  183 (187)
T ss_pred             E-eCCceEEEEeHHHHHHHH
Confidence            7 579999999999999754

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.41  E-value=0.0006  Score=61.97  Aligned_cols=105  Identities=19%  Similarity=0.082  Sum_probs=69.4

Q ss_pred             cccccccccCCC-eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc---
Q 028824           83 YTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD---  158 (203)
Q Consensus        83 ~~V~diM~~~~~-~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~---  158 (203)
                      .++.++|.+... .+...++.+..++++.|.+.+.+.+.|+|++++++|+|+.+++.+....  ...+.+.+.....   
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  351 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQ--QQGLDAALIDAPLAVD  351 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhc--CCchhhhhccCCceeC
Confidence            466777754111 1233466789999999999999999999999999999999999865332  1223333322211   


Q ss_pred             --c----hHHHH----hhhce-eeCCcEEEEEehhhHHHHHH
Q 028824          159 --S----TWKVC----EKCLS-FENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       159 --~----~~~~~----~~llv-~~~g~lvGiVt~~DI~~~L~  189 (203)
                        .    ....+    ..++| +++|+++|+|+..+++..+.
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        352 AQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRALD  393 (400)
T ss_pred             CCCCHHHHHHHHHhCCCcEEEECCCCcEEEEEEHHHHHHHHH
Confidence              1    11111    12444 45899999999999955553

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.39  E-value=0.00036  Score=63.39  Aligned_cols=74  Identities=20%  Similarity=0.237  Sum_probs=58.5

Q ss_pred             cceEecccccC-CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc
Q 028824           68 SGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS  144 (203)
Q Consensus        68 ~g~~~~~~l~~-~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~  144 (203)
                      .|.+..+++.. ......+.+.+..  +..++.+++++.+++..+.+.... +||+|++|+++|+|+..+++++....
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        321 VGAVSIDSLKTALTQQQGLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             EEEEeHHHHHhhhhcCCchhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            45666666521 1123467788877  788999999999999999997766 99999999999999999999876543

>PRK11573 hypothetical protein; Provisional

Probab=97.10  E-value=0.0012  Score=60.27  Aligned_cols=82  Identities=20%  Similarity=0.086  Sum_probs=62.9

Q ss_pred             ccccccCCccccccceEecccccCCC---Cc---cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeE
Q 028824           55 RVSALRRSSAVFASGTLTANSAAPSS---GV---YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (203)
Q Consensus        55 ~~~~~r~~~~~~~~g~~~~~~l~~~~---~~---~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~l  128 (203)
                      ++|.-+++.... -|.+..+++....   ..   ..+.++|.   ++.+++++.++.++++.|.+++.+-..|+|+.|..
T Consensus       222 R~PVy~~~~D~I-iGiv~~kDll~~~~~~~~~~~~~l~~~~r---~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~  297 (413)
T PRK11573        222 RIVLYRDSLDDA-ISMLRVREAYRLMTEKKEFTKENMLRAAD---EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDI  297 (413)
T ss_pred             eEEEEcCCCCce-EEEEEHHHHHHHhhccCcCCHHHHHhhcc---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCe
Confidence            344445566667 7888888863211   11   12335554   48899999999999999999999999999999999


Q ss_pred             EEEEehHHHhhc
Q 028824          129 VGLVSDYDLLAL  140 (203)
Q Consensus       129 vGiVt~~Dll~~  140 (203)
                      .|+||.+||+..
T Consensus       298 ~GiVTleDilEe  309 (413)
T PRK11573        298 QGLVTVEDILEE  309 (413)
T ss_pred             EEEeeHHHHHHH
Confidence            999999999964

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.07  E-value=0.0028  Score=56.95  Aligned_cols=94  Identities=17%  Similarity=0.165  Sum_probs=64.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCc-----cc----hHHHH
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV-----DS----TWKVC  164 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v-----~~----~~~~~  164 (203)
                      ......++.+..++++.|...+...+.|+|++++++|+|+.+++..+....+  .+.+.+....     ..    ....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKAQ--GLQDVLIDDIYTVDAGTLLRETVRKV  328 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcCC--chhhhhccCCceECCCCcHHHHHHHH
Confidence            3445667778999999999999999999999999999999999986543221  2333333221     11    11111


Q ss_pred             ----hhhce-eeCCcEEEEEehhhHHHHHH
Q 028824          165 ----EKCLS-FENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       165 ----~~llv-~~~g~lvGiVt~~DI~~~L~  189 (203)
                          .-++| +++|+++|+|+..+++..+.
T Consensus       329 ~~~~~~~~v~~~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       329 LKAGIKVPVVDEDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             HhCCCCEEEECCCCcEEEEEEHHHHHHHHH
Confidence                11444 45899999999999965554

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.07  E-value=0.0017  Score=58.74  Aligned_cols=50  Identities=34%  Similarity=0.502  Sum_probs=46.6

Q ss_pred             CCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        93 ~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      +.++++.++.++.++++.|..++++++.|+|++|.++|+||..|++....
T Consensus       310 ~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  310 EGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLV  359 (381)
T ss_pred             CccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999997644

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.73  E-value=0.001  Score=62.88  Aligned_cols=60  Identities=27%  Similarity=0.437  Sum_probs=53.4

Q ss_pred             CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-----CeEEEEEehHHHhhc
Q 028824           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLAL  140 (203)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-----g~lvGiVt~~Dll~~  140 (203)
                      ..++++++|+|++  ++++++.-..+..+.+++..+++.+|||+|+.     +++.|+|-...++..
T Consensus       578 ~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vl  642 (762)
T KOG0474|consen  578 YMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVL  642 (762)
T ss_pred             HhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHH
Confidence            3467799999999  99999999999999999999999999999852     579999999998855

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=96.38  E-value=0.008  Score=55.00  Aligned_cols=76  Identities=17%  Similarity=0.107  Sum_probs=59.5

Q ss_pred             CCccccccceEecccccCCCC-c---cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHH
Q 028824           61 RSSAVFASGTLTANSAAPSSG-V---YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD  136 (203)
Q Consensus        61 ~~~~~~~~g~~~~~~l~~~~~-~---~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~D  136 (203)
                      .+.... -|.+..+++..... .   ......+.   ++..++++.++.++++.|++.+.+-..|+|+-|...|+||.+|
T Consensus       247 ~~~D~i-iGiv~~Kdll~~~~~~~~~~~~~~~~~---~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleD  322 (429)
T COG1253         247 GDLDNI-IGIVHVKDLLRALLDGQSDLDLRVLVR---PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLED  322 (429)
T ss_pred             CCCCcE-EEEEEHHHHHHHHhcCccccchhhccc---CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHH
Confidence            556666 88888888722221 1   22222333   5899999999999999999999999999999999999999999


Q ss_pred             Hhhc
Q 028824          137 LLAL  140 (203)
Q Consensus       137 ll~~  140 (203)
                      |+..
T Consensus       323 IiEe  326 (429)
T COG1253         323 IIEE  326 (429)
T ss_pred             HHHH
Confidence            9965

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.37  E-value=0.0089  Score=56.71  Aligned_cols=56  Identities=25%  Similarity=0.394  Sum_probs=42.6

Q ss_pred             cccccccCC---CeEEEcCC-CCHHHHHHHHHHCCCcEEEEEe--CCCeEEEEEehHHHhhc
Q 028824           85 VGDFMTTKE---ELHVVKPT-TTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        85 V~diM~~~~---~~~~v~~~-~ti~ea~~~m~~~~~~~lPVvd--~~g~lvGiVt~~Dll~~  140 (203)
                      ..++|.+.+   ...+++.+ .+++|...+|.+..++++||+-  +..+++|+|..+|+.-.
T Consensus       545 ~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~  606 (696)
T KOG0475|consen  545 AIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLA  606 (696)
T ss_pred             hhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHH
Confidence            344554432   35666666 8999999999999999999983  34689999999998843

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=96.28  E-value=0.0049  Score=47.13  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=30.2

Q ss_pred             CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC
Q 028824           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD  125 (203)
Q Consensus        94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~  125 (203)
                      +++++.+++++.+|++.|.++++..+||+|++
T Consensus        87 ~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          87 GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            78999999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=95.76  E-value=0.016  Score=52.16  Aligned_cols=84  Identities=20%  Similarity=0.243  Sum_probs=63.1

Q ss_pred             ccccccCCccccccceEecccc---cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEE
Q 028824           55 RVSALRRSSAVFASGTLTANSA---APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (203)
Q Consensus        55 ~~~~~r~~~~~~~~g~~~~~~l---~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGi  131 (203)
                      ++|--|++.... -|.+-.+++   ..+..+.+-.+++.-..++.++++.+++.+-+..|.+++-+.-.|||+-|.+.|+
T Consensus       235 Riplyr~~~DnI-iGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GL  313 (423)
T COG4536         235 RIPLYRDDLDNI-IGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGL  313 (423)
T ss_pred             ceeeecCChhHh-hhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEee
Confidence            455566666665 666555544   1122224555666444469999999999999999999998888999999999999


Q ss_pred             EehHHHhh
Q 028824          132 VSDYDLLA  139 (203)
Q Consensus       132 Vt~~Dll~  139 (203)
                      ||.+||+.
T Consensus       314 VTLEDIlE  321 (423)
T COG4536         314 VTLEDILE  321 (423)
T ss_pred             eeHHHHHH
Confidence            99999995

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.60  E-value=0.024  Score=53.96  Aligned_cols=57  Identities=18%  Similarity=0.266  Sum_probs=52.2

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      .+....+|.+  .++++.+++++..+..++++-+.+++.|+++.++.+|++|.+|+.+.
T Consensus       689 yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  689 YVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY  745 (762)
T ss_pred             ccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence            3456789988  89999999999999999999999999999988899999999999854

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.06  E-value=0.047  Score=49.43  Aligned_cols=55  Identities=15%  Similarity=0.251  Sum_probs=45.1

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ...+.+ +..  +..++++++++.+++..+.+.+.. ++|+|+ |+++|+|+..+++.+.
T Consensus       325 ~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~  379 (382)
T TIGR03415       325 EQEVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHAL  379 (382)
T ss_pred             ccchhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHH
Confidence            345666 555  688999999999999988887654 888885 9999999999998754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=94.78  E-value=0.069  Score=45.50  Aligned_cols=82  Identities=23%  Similarity=0.292  Sum_probs=64.3

Q ss_pred             ccccccCCccccccceEecccccC----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEE
Q 028824           55 RVSALRRSSAVFASGTLTANSAAP----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (203)
Q Consensus        55 ~~~~~r~~~~~~~~g~~~~~~l~~----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvG  130 (203)
                      +.|.--.+-... .|++.+++|..    ......+.++..+   .+++++.-.+.-.++-++.++..-..|+|+-|.+-|
T Consensus       102 RfPVi~edkD~v-~GIL~AKDLL~~~~~~~~~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsG  177 (293)
T COG4535         102 RFPVISEDKDHV-EGILLAKDLLPFMRSDAEPFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSG  177 (293)
T ss_pred             cCCcccCCchhh-hhhhhHHHHHHHhcCCcccccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeee
Confidence            344433344555 78888888722    2233677787765   889999999999999999999999999999999999


Q ss_pred             EEehHHHhhc
Q 028824          131 LVSDYDLLAL  140 (203)
Q Consensus       131 iVt~~Dll~~  140 (203)
                      +||.+|++..
T Consensus       178 LVTIEDiLEq  187 (293)
T COG4535         178 LVTIEDILEQ  187 (293)
T ss_pred             eEEHHHHHHH
Confidence            9999999964

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=93.68  E-value=0.086  Score=51.28  Aligned_cols=75  Identities=23%  Similarity=0.354  Sum_probs=59.7

Q ss_pred             ccccccceEeccccc---------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC--CeEEEE
Q 028824           63 SAVFASGTLTANSAA---------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGL  131 (203)
Q Consensus        63 ~~~~~~g~~~~~~l~---------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~--g~lvGi  131 (203)
                      |..+ ++++-++.+.         .....+.|+++|.+  ++.++..++|..|..+.+..+.++.+|+||+.  .-|+|.
T Consensus       560 PSiY-DSII~IKklPYLPDlpps~~~~h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGS  636 (931)
T KOG0476|consen  560 PSIY-DSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGS  636 (931)
T ss_pred             cchh-hheeeeccCCcCCCCCCcccceeEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeeh
Confidence            3444 6666666651         22345789999999  99999999999999998888879999999853  469999


Q ss_pred             EehHHHhhc
Q 028824          132 VSDYDLLAL  140 (203)
Q Consensus       132 Vt~~Dll~~  140 (203)
                      |..+.|..+
T Consensus       637 V~R~~L~~l  645 (931)
T KOG0476|consen  637 VARRYLTAL  645 (931)
T ss_pred             hHHHHHHHH
Confidence            999998855

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=93.29  E-value=0.2  Score=47.90  Aligned_cols=57  Identities=14%  Similarity=0.241  Sum_probs=50.2

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      ..+..+++|..  .+.++...++++-+++++++-+.+.+.|. ++|++.|+||.+|+++.
T Consensus       637 ~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  637 SRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH  693 (696)
T ss_pred             CCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence            45667888887  88999999999999999999999999876 47999999999999864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.08  E-value=0.21  Score=44.49  Aligned_cols=102  Identities=23%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCccch
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~~~  160 (203)
                      .-++++++|.+.+....-.+...-..+...+.+.....+.+++.+++.+|+|+..++.......      ....-.....
T Consensus       272 ~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~------~~~~v~~d~~  345 (386)
T COG4175         272 RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAALID------DVLTVDADTP  345 (386)
T ss_pred             heeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcccccc------cccccCccch
Confidence            4567888998521222223334445678888888887888888778899999999987641100      0001011111


Q ss_pred             HH----HH-----hhhceeeCCcEEEEEehhhHHHHH
Q 028824          161 WK----VC-----EKCLSFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       161 ~~----~~-----~~llv~~~g~lvGiVt~~DI~~~L  188 (203)
                      ..    ..     ...+++++++++|+++...++..|
T Consensus       346 ~~~~~~~~~~~~~p~aVvde~~r~vG~i~~~~vl~aL  382 (386)
T COG4175         346 LSEILARIRQAPCPVAVVDEDGRYVGIISRGELLEAL  382 (386)
T ss_pred             HHHHHHHHhcCCCceeEEcCCCcEEEEecHHHHHHHH
Confidence            11    11     224567899999999999994443

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=91.95  E-value=0.35  Score=43.14  Aligned_cols=52  Identities=23%  Similarity=0.342  Sum_probs=43.0

Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        88 iM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .+..  ++.++..++++.+.+..+.+.. ..++|+|++|+++|+|+...++.++.
T Consensus       332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         332 ALID--DVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             cccc--cccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHh
Confidence            4444  6888999999999998888764 46889999999999999999997653

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.36  E-value=0.4  Score=41.58  Aligned_cols=59  Identities=24%  Similarity=0.315  Sum_probs=41.5

Q ss_pred             CccccccccccCC--CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           81 GVYTVGDFMTTKE--ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        81 ~~~~V~diM~~~~--~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      ...++.+.|....  +--.+.......+++..+...+.+.+||+|++|+++|.||..+++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         247 SLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             chhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            4445555555411  1112233445566888888899999999999999999999999874

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=89.44  E-value=0.5  Score=42.81  Aligned_cols=96  Identities=16%  Similarity=0.088  Sum_probs=52.9

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCc--
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV--  157 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v--  157 (203)
                      ..-++++++|.+   ...+...... .+++.   ++.+.+.|+|+     |+++..+...+..........+ +..+.  
T Consensus       271 ~~~l~a~~~m~~---~~~~~~~~~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  337 (382)
T TIGR03415       271 LNVLTARSLMRP---LTDLEHVDGG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAAEQEVES-LEAAPTV  337 (382)
T ss_pred             ccceeHHHHhcc---cccccccCcc-hhhhh---cccceeEeecc-----ceecccchHhHhhcccccchhh-hcccCcc
Confidence            455688899954   3333222222 34433   77888999985     8888777654322111112222 11111  


Q ss_pred             ---cchHHHH--------hhhceeeCCcEEEEEehhhHHHHH
Q 028824          158 ---DSTWKVC--------EKCLSFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       158 ---~~~~~~~--------~~llv~~~g~lvGiVt~~DI~~~L  188 (203)
                         .....++        .-+.+.++|+++|+|++.+++..|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~  379 (382)
T TIGR03415       338 INPDTLMRDVLAARHRTGGAILLVENGRIVGVIGDDNIYHAL  379 (382)
T ss_pred             cCCCCcHHHHHHHHhcCCCCeEEeeCCeEEEEEeHHHHHHHH
Confidence               1112211        224556679999999999995544

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PF00571 CBS: CBS domain CBS domain web page

Probab=85.18  E-value=1  Score=28.38  Aligned_cols=22  Identities=23%  Similarity=0.013  Sum_probs=17.3

Q ss_pred             hcee-eCCcEEEEEehhhHHHHH
Q 028824          167 CLSF-ENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       167 llv~-~~g~lvGiVt~~DI~~~L  188 (203)
                      +++. ++|+++|+|+.+|+++.+
T Consensus        33 ~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen   33 LPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             EEEESTTSBEEEEEEHHHHHHHH
T ss_pred             EEEEecCCEEEEEEEHHHHHhhh
Confidence            4444 789999999999995543

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
4gqv_A	166	Crystal Structure Of Cbs-pair Protein, Cbsx1 From A		2e-41
3sl7_A	180	Crystal Structure Of Cbs-Pair Protein, Cbsx2 From A		1e-30
4gqw_A	152	Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop		1e-29
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		5e-06
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		2e-05

>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From Arabidopsis Thaliana Length = 166

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 88/103 (85%), Gaps = 3/103 (2%)
Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKV---CEKCLSFENYICLGSL 179
           LDSISGSGR +NSMFPEVDSTWK     +K LS  N   +G L
Sbjct: 62  LDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDL 104

>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 71/80 (88%)
Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           YTVGDF T ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4   YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 143 ISGSGRADNSMFPEVDSTWK 162
           ISG  + D ++FP+VDSTWK
Sbjct: 64  ISGRSQNDTNLFPDVDSTWK 83

>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop Deletion) From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 74/104 (71%), Gaps = 17/104 (16%)
Query: 79  SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLL
Sbjct: 1   GSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL 60
Query: 139 ALDSISGSGRADNSMFPEVDSTWKV---CEKCLSFENYICLGSL 179
           ALDS               DSTWK     +K LS  N   +G L
Sbjct: 61  ALDS--------------GDSTWKTFNAVQKLLSKTNGKLVGDL 90

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G +T    A   G   V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KL
Sbjct: 137 GIITKKDIAAREG-KLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193
Query: 129 VGLVSDYDLLALDSISGSGRADNS 152
           VGL++  DL+A      + R +N 
Sbjct: 194 VGLITMSDLVARKKYKNAVRDENG 217

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           + D MT +E+L V  P  ++++A EIL + RI   P++  D KLVGL++  D++++
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSV 212

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	6e-28
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	4e-19
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-21
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-10
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	4e-21
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	3e-11
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	9e-21
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	3e-12
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-20
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-13
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-20
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	6e-11
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-17
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-13
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-16
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	5e-12
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	5e-16
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-12
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	8e-16
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	4e-14
1pbj_A	125	Hypothetical protein; structural genomics, domain,	4e-15
1pbj_A	125	Hypothetical protein; structural genomics, domain,	8e-13
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-14
1pvm_A	184	Conserved hypothetical protein TA0289; structural	5e-14
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-14
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-13
1vr9_A	213	CBS domain protein/ACT domain protein; structural	2e-14
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-11
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-14
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	2e-12
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-14
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-11
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	5e-14
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-13
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	6e-14
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-13
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-13
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-12
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-11
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-10
3ddj_A	296	CBS domain-containing protein; structural genomics	7e-13
3ddj_A	296	CBS domain-containing protein; structural genomics	8e-13
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-11
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-10
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-13
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-11
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-10
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	4e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	9e-13
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-11
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-10
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-05
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	7e-12
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-11
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	9e-12
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-08
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-11
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	9e-11
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-11
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-10
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	3e-07
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-11
4fry_A	157	Putative signal-transduction protein with CBS DOM;	3e-10
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	2e-11
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	2e-06
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	4e-11
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	8e-05
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	5e-11
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	8e-09
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-08
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-04
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	4e-10
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	3e-05
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	9e-10
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	5e-06
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-08
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	1e-09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	4e-07
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	1e-09
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	5e-07
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	5e-08
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	1e-05
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	6e-08
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	2e-05
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	9e-08
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	2e-06
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	1e-07
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	1e-06
3fio_A	70	A cystathionine beta-synthase domain protein fused	1e-06
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	1e-06
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	1e-05
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	1e-04
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	3e-04
2oux_A	286	Magnesium transporter; 10001B, structural genomics	6e-04
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	7e-04

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score =  102 bits (257), Expect = 6e-28
 Identities = 58/80 (72%), Positives = 72/80 (90%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           YTVGDFMT ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4   YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63

Query: 143 ISGSGRADNSMFPEVDSTWK 162
           ISG  + D ++FP+VDSTWK
Sbjct: 64  ISGRSQNDTNLFPDVDSTWK 83

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 79.8 bits (197), Expect = 4e-19
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 10/84 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL----- 138
            VGD MT      VV+ +T +++A  +L+E +    PV+D D KL+G+++  +++     
Sbjct: 99  VVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ 156

Query: 139 ---ALDSISGSGRADNSMFPEVDS 159
                DSISG  + D ++FP+VDS
Sbjct: 157 IKRNADSISGRSQNDTNLFPDVDS 180

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 84.8 bits (210), Expect = 3e-21
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D M + E++  V+    ++ AL +LV+   +  PV+D  +KL GL+S   +  LD I
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMI--LDGI 73

Query: 144 SGSGRADNSMFPEV 157
            G  R +     E+
Sbjct: 74  LGLERIEFERLEEM 87

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V   M     + V+K   +  +ALE+ ++        +++D    G+++   +L
Sbjct: 87  MKVEQVMKQD--IPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAIL 138

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 84.4 bits (209), Expect = 4e-21
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TV  F+   +++  V+P   +D AL +L +   +  PV+D  +KL GL+S   +  +D+I
Sbjct: 12  TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMM--MDAI 69

Query: 144 SGSGRADNSMFPEV 157
            G  R +      +
Sbjct: 70  LGLERIEFERLETM 83

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V + M     +  ++   ++ +A+ ++V        V +DD    G+ +  ++L
Sbjct: 83  MKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVL 134

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 83.1 bits (206), Expect = 1e-20
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
           V  V   ++   +  VV+  T ++E ++ ++E  +T    +  D KLVG++    LL + 
Sbjct: 15  VKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS 72

Query: 142 SISGSGRADNSMFPE 156
                G         
Sbjct: 73  GFHFFGFIPKEELIR 87

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 51  TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEI 110
                +         F        S+          + M        V   T ++EAL++
Sbjct: 64  PVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKL 120

Query: 111 LVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +++  I   PV+D+  ++VG ++  ++L
Sbjct: 121 MIDNNIQEMPVVDEKGEIVGDLNSLEIL 148

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 82.5 bits (204), Expect = 2e-20
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TVG FM   +++  V+    ++ AL +L +   T  PV+D  ++L GL+    +  ++SI
Sbjct: 15  TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI--MNSI 72

Query: 144 SGSGRADNSMFPEV 157
            G  R +     ++
Sbjct: 73  FGLERIEFEKLDQI 86

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 57.5 bits (139), Expect = 6e-11
 Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            TV + M T   +  +     + +   +++        V +D+    G+ +   +L
Sbjct: 86  ITVEEVMLTD--IPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVL 137

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 74.9 bits (185), Expect = 1e-17
 Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 84  TVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            +GD  + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L
Sbjct: 9   PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 64.1 bits (157), Expect = 1e-13
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +  +    E ++       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 78  SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 72.3 bits (178), Expect = 1e-16
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT    +   K    V EA E +++ +I+  PVIDD+ K++G+V+  D+ 
Sbjct: 9   KVKDVMTKN--VITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIG 61

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 60.0 bits (146), Expect = 5e-12
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILV-----EKRITGFPVIDDDWKLVGLVSDYDLL 138
           T+GD MT   ++  +    ++ EA++ +      E+ I   PV+D + KLVG++SD D++
Sbjct: 74  TIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 70.4 bits (173), Expect = 8e-16
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT     H +  T T+++A  ++    I   P++D + KL+G+VS  DLL
Sbjct: 6   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL 58

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 65.8 bits (161), Expect = 4e-14
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
            + + M T  ++  V P   + E+   + + +I   PV+  D  LVG+++D D +    +
Sbjct: 79  PLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFVTIAIN 135

Query: 143 ISGSGRA 149
           +      
Sbjct: 136 LLELQEE 142

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 67.5 bits (166), Expect = 4e-15
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D M T  ++  +  T ++++ L   VE       V+ +    VG+V+ +D+L
Sbjct: 2   RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEG-VRVGIVTTWDVL 53

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 61.8 bits (151), Expect = 8e-13
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + M     L  + P  T+ EA E +V+  +    V +DD +++G++S  D+L
Sbjct: 66  KVWEVMERD--LVTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISATDIL 117

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +   M     +  VK    V +    L E  +    V+DD  ++VG+V+  DL     +
Sbjct: 76  PIRLVMRKP--IPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY--L 131

Query: 144 SGSGRADNSMFPEVDSTWKVCEKC 167
           S +   D  +         +C KC
Sbjct: 132 SRASITDILLSHRTKDYQHLCPKC 155

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 66.3 bits (162), Expect = 5e-14
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   M +      V   TTV +A++I+ E  + G  V DD+   VGL+S+  ++
Sbjct: 10  RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSII 62

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 66.4 bits (163), Expect = 1e-14
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D ++            ++ EA +IL++  I   P++D+  KLVG+++ +D+ 
Sbjct: 3   VKDILSKP--PITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIA 54

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 63.7 bits (156), Expect = 1e-13
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T+ + MT    +        VD     + +  I+G PV+DD  ++VG+V+  D+ 
Sbjct: 63  TIEEIMT--RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS 115

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
            V  ++T   +  +V+ + TV E L  + + +     V D +    G+V+  DLL LD
Sbjct: 14  KVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD 69

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
           +V + ++       V     +  AL + +E +    PV+D++ +L G VS +D L AL  
Sbjct: 73  SVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE 130

Query: 143 ISGSGRA 149
                  
Sbjct: 131 ALAMDVP 137

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 65.6 bits (161), Expect = 3e-14
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D++
Sbjct: 9   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIV 61

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 60.6 bits (148), Expect = 2e-12
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T G+       ++ V    ++ E L ++ E ++   PVI +  +LVG+V++ D+ 
Sbjct: 75  TAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIA 126

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 65.3 bits (160), Expect = 4e-14
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +  +MT K  L  VKP+T+V EA  +++E  +    VI+DD  +VG  +  D++
Sbjct: 8   PIKVYMTKK--LLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDII 60

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   MT    L      T + E L  + E RI    + ++  K+VG+ +  DLL
Sbjct: 73  PVERIMTRN--LITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLL 124

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 65.8 bits (161), Expect = 5e-14
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V DF +      V+    +V +A+  +  + +    V+D D  LVG++S  DLL
Sbjct: 18  QVKDFQSIP---VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLL 69

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLL 138
            V   MT    + V +    V +  + L+EK+I   PVI D    ++++G V+  ++ 
Sbjct: 82  PVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMT 139

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 64.9 bits (159), Expect = 6e-14
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              +FMT    L  ++  + +  AL ++ +  I   PV+DD   L G++S  D+ 
Sbjct: 68  KAEEFMTAS--LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDIT 120

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V ++M T  ++  V     +++  +++ EK I    V+D + K VG++++ D++
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN-KPVGIITERDIV 56

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 64.8 bits (158), Expect = 7e-13
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + M    ++   K    + +  EI+V   I   PV+D++ ++ G++++ D+L
Sbjct: 224 RMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVL 276

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL--ALD 141
            V + M     +  +K    +DEA+E  + K + G P+++D+ +L+ L+++ D++   LD
Sbjct: 85  PVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLD 142

Query: 142 SISGSGRADNSMFPEVDSTW 161
            I  +   D+ +  +V    
Sbjct: 143 KIDENEVIDDYITRDVIVAT 162

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              + D++T   ++ V  P   + +    +V       PV+ +  +LVG+++  D +
Sbjct: 147 NEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEG-RLVGIITSTDFI 200

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLL 138
           +      K  +  V PTTT+ +AL  + E +    PV++  + K+VG+++  D++
Sbjct: 6   MKIAQNKK--IVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIV 58

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 64.8 bits (158), Expect = 7e-13
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
            + D+MT       V  T+    A+ I+V +     PV+D + K VG+V++ + L     
Sbjct: 94  PIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD 151

Query: 143 ISGSGRADNSMFPEVDSTW 161
           +         M  +V + +
Sbjct: 152 LDEIFPVKVFMSTKVQTIY 170

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 64.8 bits (158), Expect = 8e-13
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 77  APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD 136
                ++ V  FM+TK  +  +     +D+A+++++ +     PVIDDD K+VG+V+  +
Sbjct: 150 KDLDEIFPVKVFMSTK--VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVN 207

Query: 137 LL 138
            +
Sbjct: 208 AI 209

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D M T   L  +    +V+ A   ++ KRI    +++ D  + G++++ DLL
Sbjct: 228 VVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL 280

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 56.7 bits (137), Expect = 5e-10
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +   M       ++     +  A + + E  I    V ++  K+ GL++  DLL
Sbjct: 21  NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLL 71

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 65.0 bits (158), Expect = 8e-13
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL 140
           +   D + T  +L V   +  V +A   LV   +   P+ D      VG+++  D + +
Sbjct: 35  HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINI 93

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 35  CLLLSRPGCRVFSVLATSSDRVSA-LRRSSAVFASGTLTANSAAPSSGVYTVGDFMT-TK 92
              L R       V+   S      L     +            P     ++ +    T 
Sbjct: 141 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTY 200

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
             + +V+ TT V  AL I V+ R++  PV+D+  ++V + S +D++ L +       D S
Sbjct: 201 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS 260

Query: 153 M 153
           +
Sbjct: 261 V 261

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 57.3 bits (138), Expect = 3e-10
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +V   +  +    E +       T++  +  LVE  +    V+D+   + G+VS  D+L
Sbjct: 260 SVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 318

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSG 147
             + + L  + P  ++ +A+  L+  +I   PVID +    + +++   +L    +  + 
Sbjct: 122 QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE 181

Query: 148 RADNSMFP 155
                   
Sbjct: 182 FPKPEFMS 189

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 64.4 bits (157), Expect = 9e-13
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +   +    ++ VVK   T+ +A ++++E       V+D   K VG+++  D++
Sbjct: 62  LAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT   ++ V  P  TV E    + +  I   PVI  +  L+GL+ D+DLL
Sbjct: 222 PVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 274

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V   MT       +    T + ALE+  + ++  FPV++ + KLVG++S   +L
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL 54

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +  +      + +V   T +  AL+ L+       PV+D +  LVG+V + DLL
Sbjct: 127 EIEPYYQRY--VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL 179

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 59.5 bits (145), Expect = 7e-12
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 80  SGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             + TV   +  K   +  + P  +V  A++ +    I    V+ D+ KLVG++++ D  
Sbjct: 3   GHMKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-KLVGILTERDFS 61

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT +  +  V    T ++ + ++ E R+   PV+DD  K++GL+S  DL+
Sbjct: 75  QVKEIMTRQ--VAYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 126

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 61.1 bits (147), Expect = 9e-12
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 87  DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           D++ TK+ L  V     V++    + E R + +PVID++ K+VG ++ + L+
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYDLLALD 141
            V D      ++  + P  ++  A  I+ +K +   PV D +  L+G++  S+     +D
Sbjct: 8   KVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD 65

Query: 142 SISGSGRADNSMFPEVDSTWKVCEKCLSFEN 172
               +  A ++   +        E     E 
Sbjct: 66  IWDSNILAKSATSLDNILDTLSAEAQNINEE 96

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +V   MT    +   +  +T D+ +EI+   R    PV ++  +L G++S  D++
Sbjct: 94  SVSVAMTKN--VVRCQHNSTTDQLMEIMTGGRFRHVPVEENG-RLAGIISIGDVV 145

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.9 bits (138), Expect = 9e-11
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 59  LRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRIT 117
           +  S       +   N          V D +  K  ++  V P  ++ EA   L   +I 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGMAT-FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIG 59

Query: 118 GFPVIDDDWKLVGLVSDYDLL 138
              V D D  ++G+ ++ DL+
Sbjct: 60  AVVVTDADGVVLGIFTERDLV 80

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 14/52 (26%), Positives = 32/52 (61%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L
Sbjct: 194 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 245

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 84  TVGDFMT----TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +       E ++       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 257 SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 315

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL 140
            T  D +     L V+  +  V ++L +L++  I   P+ D    +  GL++  D + +
Sbjct: 30  KTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINV 88

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT K  +  V+P+ + DE + ++ E R+   PV+D   KL+GL+S  DL+
Sbjct: 79  RVEEIMTAK--VRYVEPSQSTDECMALMTEHRMRHLPVLDGG-KLIGLISIGDLV 130

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 77  APSSGVYTVGDFMTTKE----ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            P S   TV   +  K      ++ V     V +A++++ EK I    V+D D  + G+V
Sbjct: 1   GPGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIV 59

Query: 133 SDYDLL 138
           ++ D  
Sbjct: 60  TERDYA 65

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 84  TVGDFMTTKEELHVV----KPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDL 137
              D M  +    ++    + + TV++   I+ E   +GFPV+      +LVG V   DL
Sbjct: 12  LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 71

Query: 138 L 138
           +
Sbjct: 72  I 72

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + +        V   T ++  ++I  +  +    V  +  +L+G+++  D+L
Sbjct: 109 KLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVL 160

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 58.1 bits (140), Expect = 4e-11
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLL 138
            V  FM     +  +   T ++E ++++    +T +P+++      LVG+V    L+
Sbjct: 14  RVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLV 68

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 40.8 bits (95), Expect = 8e-05
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +     T+     +   TT+ +A  +     +    V     + VG VS  ++ 
Sbjct: 89  ILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRG-RAVGCVSWVEMK 142

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 57.0 bits (138), Expect = 5e-11
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T      T  +  V     +  +A   L        PV+D + + +G+V    LL     
Sbjct: 6   TFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKG 62

Query: 144 SGSG--RADNSMFPEV 157
             +   +    +   V
Sbjct: 63  WPTVKEKLGEELLETV 78

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 50.9 bits (122), Expect = 8e-09
 Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            +G+ +     +   +P   + + L  +   + +  P+ D+D +  G+VS   +L 
Sbjct: 69  KLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILG 122

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +  +    + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 252 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 310

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 91  TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           T   L      T V + +++L EK I+  P+++ +  L+ +    D++ L
Sbjct: 191 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHL 240

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL 140
           T  D + T   L V   T  V  +L +L    I   P+ D +  K  GL++  D + +
Sbjct: 23  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNV 80

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL--VSDYD 136
           V D MT   +L      T + EA +I+ EK++   P+IDDD  L  +    DYD
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYD 216

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDL 137
           VKP  T  + L I          V DD      L+GLV+  D 
Sbjct: 110 VKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDY 152

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 56.4 bits (137), Expect = 9e-10
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + + MT + EL V     T+ EA EIL   +    P+++D  +LV +++  DL
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDL 227

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 45.2 bits (108), Expect = 5e-06
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDL 137
           V+ P+ TV + LE  +    +G P+ +      KLVG+V+  D+
Sbjct: 120 VLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDI 163

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                  +      V  T  V  A E +    I    V++ + +LVG++S  DL 
Sbjct: 72  PAMPIANS---PITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 123

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLL 138
              + +        +  T T+ E    L + R+    +   D+  + V +VS+ D+L
Sbjct: 6   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL 60

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + D MT +E+L V  P  ++++A EIL + RI   P++  D KLVGL+
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLI 204

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 48.6 bits (117), Expect = 4e-07
 Identities = 17/40 (42%), Positives = 30/40 (75%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           V P  TV EA++++ E +I G PV+D++ +LVGL+++ D+
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV 147

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V   MT KE L  VK   T  E  E + + R+    V++D+++L G++
Sbjct: 151 VAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMI 198

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 47.9 bits (115), Expect = 5e-07
 Identities = 12/40 (30%), Positives = 25/40 (62%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           V+P  T+ + +E+       GFPV+ ++ +LVG+++  D+
Sbjct: 102 VRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV 141

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + D MT KE+L      TT+ EA +IL + +I   P++D++  L GL+
Sbjct: 177 ISDVMT-KEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLI 223

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDL 137
           + P   V +A  ++ + RI+G PV++  D+ KLVG++++ D+
Sbjct: 126 LTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM 167

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 50.9 bits (123), Expect = 6e-08
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + + MT  E L      T ++ A  IL E RI   P++D+  +L GL+
Sbjct: 154 ISEHMT-SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLI 200

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDL 137
           + P   V EA E++   RI+G P+++   + KLVG++++ D+
Sbjct: 103 LTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM 144

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 50.6 bits (122), Expect = 9e-08
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KLVGL+
Sbjct: 152 VKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLI 197

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + P  TVD AL ++ +  I G PV++D+ K+VG+++  D+
Sbjct: 106 IAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDI 144

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKR--ITGFPVIDDDWKLVGLVSDYDL 137
            V D M T +E+  V    T+ +AL  +  K   +T   + DDD  ++G+ +D DL
Sbjct: 29  RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTA--ICDDDMNIIGIFTDGDL 82

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           ++ D MT       ++P T   +AL ++  + IT   V D D  L+G+V  +DLL
Sbjct: 96  SIADVMTRGG--IRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLL 147

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 78  PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYD 136
             S   T  + M   E    + P +       IL +      FPVID +  L+G +S  +
Sbjct: 448 DRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKE 507

Query: 137 LL 138
           ++
Sbjct: 508 IV 509

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL---DSISGSG 147
                ++K   TV EA+ ++ + R+   PV+D DD  ++G+V    L+      +   S 
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSD 451

Query: 148 RADNSM---FPEVDST 160
            A  ++      ++ +
Sbjct: 452 PAIKALNKRVIRLNES 467

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 79  SSGVY--TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK--LVGLVSD 134
           S+  Y   VGD M    ++  +  T+T  + L +L + ++  FP +D      L+G +  
Sbjct: 7   SANKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDR 64

Query: 135 YDLLALDSISGSGRADNSMFPEVDS 159
            ++  L     S             
Sbjct: 65  TEVEGLLQRRISAYRRQPAAAAEAD 89

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLL 138
             +G +     ++ V+    TV +A                ++D+  K +G V  YD+ 
Sbjct: 54  NEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIF 110

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-------VIDDDWKLVGLVSDY 135
            T G  MTT  E   +    TV  A+ +L  K             V+D +  LVG++S  
Sbjct: 137 ETAGAIMTT--EFVSIVANQTVRSAMYVL--KNQADMAETIYYVYVVDQENHLVGVISLR 192

Query: 136 DLL 138
           DL+
Sbjct: 193 DLI 195

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-------VIDDDWKLVGLVSDY 135
              G  MT   E   V+   TV+E L  L  +R            V+D+  +L G++S  
Sbjct: 135 DEAGGLMTP--EYVAVREGMTVEEVLRFL--RRAAPDAETIYYIYVVDEKGRLKGVLSLR 190

Query: 136 DLL 138
           DL+
Sbjct: 191 DLI 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
4esy_A	170	CBS domain containing membrane protein; structural	99.66
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.63
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.59
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.58
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.55
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.55
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.54
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.54
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.54
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.54
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.54
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.53
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.53
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.53
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.52
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.52
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.52
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.52
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.52
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.51
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.5
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.5
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.5
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.48
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.47
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.47
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.46
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.46
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.46
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.45
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.45
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.45
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.45
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.44
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.44
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.43
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.41
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.38
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.36
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.36
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.34
3ddj_A	296	CBS domain-containing protein; structural genomics	99.33
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.32
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.31
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.3
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.3
3ddj_A	296	CBS domain-containing protein; structural genomics	99.3
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.3
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.29
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.29
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.21
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.21
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.2
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.17
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.15
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.12
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.03
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.01
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.01
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.0
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.0
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.99
4esy_A	170	CBS domain containing membrane protein; structural	98.98
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.98
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.97
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.97
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.95
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.94
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.94
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.93
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.92
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.92
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.91
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.9
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.89
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.89
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.89
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.88
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.88
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.88
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.87
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.87
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.87
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.86
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.86
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.85
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.84
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.84
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.83
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.83
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.82
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.82
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.82
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.81
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.8
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.79
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.79
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.78
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.78
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.76
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.75
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.75
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.75
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.74
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.74
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.74
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.73
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.69
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.67
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.65
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.64
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.63
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.61
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.55
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.5
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.48
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.4
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.34
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.31
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.3
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.25
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.23
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.17
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.1
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.1
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.97
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	90.11
3fio_A	70	A cystathionine beta-synthase domain protein fused	84.36

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.66  E-value=1e-16  Score=125.76  Aligned_cols=103  Identities=19%  Similarity=0.249  Sum_probs=83.6

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh----------------
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----------------  143 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~----------------  143 (203)
                      +.+++|+|+|++  +++++.+++++.+|++.|.+++++++||+|++|+++|+||.+||++....                
T Consensus        15 l~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~   92 (170)
T 4esy_A           15 IRQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPA   92 (170)
T ss_dssp             HHTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCH
T ss_pred             HcCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccch
Confidence            467899999998  89999999999999999999999999999999999999999999865321                


Q ss_pred             ---------cCCCccccCccCCccc---------hHHHH-----hhhceeeCCcEEEEEehhhH
Q 028824          144 ---------SGSGRADNSMFPEVDS---------TWKVC-----EKCLSFENYICLGSLSLKFL  184 (203)
Q Consensus       144 ---------~~~~~v~~~m~~~v~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI  184 (203)
                               .....+.++|.+++..         ..+.+     .+++|.++|+++|+||..|+
T Consensus        93 ~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Di  156 (170)
T 4esy_A           93 PEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDL  156 (170)
T ss_dssp             HHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHH
T ss_pred             hhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHH
Confidence                     1123466777765431         22222     45778889999999999999

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.63  E-value=1.6e-15  Score=118.32  Aligned_cols=111  Identities=18%  Similarity=0.135  Sum_probs=86.0

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-------CCCccccCcc
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------GSGRADNSMF  154 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-------~~~~v~~~m~  154 (203)
                      ..+++++|+++.++.++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++++....       ....+.++|.
T Consensus        14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~   93 (156)
T 3k6e_A           14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTK   93 (156)
T ss_dssp             HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCB
T ss_pred             hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhc
Confidence            457899999988999999999999999999999999999999889999999999998764321       3456778887


Q ss_pred             CCccc---------hHHHH---hhhc-eeeCCcEEEEEehhhHHHHHHHHh
Q 028824          155 PEVDS---------TWKVC---EKCL-SFENYICLGSLSLKFLTFLLIFVN  192 (203)
Q Consensus       155 ~~v~~---------~~~~~---~~ll-v~~~g~lvGiVt~~DI~~~L~a~~  192 (203)
                      +++..         ..+.+   ..++ ++++|+++|+||.+|++..+....
T Consensus        94 ~~~~~v~~~~~l~~~~~~m~~~~~lpVVd~~g~l~GiiT~~Dil~~~~~~~  144 (156)
T 3k6e_A           94 TDVAVVSPDFTITEVLHKLVDESFLPVVDAEGIFQGIITRKSILKAVNALL  144 (156)
T ss_dssp             CSCCCBCTTCCHHHHHHHTTTSSEEEEECTTSBEEEEEEHHHHHHHHHHHS
T ss_pred             CCceecccccHHHHHHHHHHHcCCeEEEecCCEEEEEEEHHHHHHHHHHHh
Confidence            75532         12222   1233 457899999999999966655544

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.59  E-value=8.1e-15  Score=111.87  Aligned_cols=110  Identities=13%  Similarity=0.163  Sum_probs=87.0

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCCCccccCccCC
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~  156 (203)
                      ..+...+|+++|+++.++.++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|++++........+.++| .+
T Consensus        18 ~~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~~m-~~   96 (148)
T 3lv9_A           18 FEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINENKIELEEIL-RD   96 (148)
T ss_dssp             CGGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSCCCGGGTC-BC
T ss_pred             hccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCCCccHHHhc-CC
Confidence            346788999999976679999999999999999999999999999987 8999999999999875443356788888 43


Q ss_pred             cc---------chHHHH-----hhhcee-eCCcEEEEEehhhHHHHH
Q 028824          157 VD---------STWKVC-----EKCLSF-ENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       157 v~---------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L  188 (203)
                      +.         .....+     ..+++. ++|+++|+||..|++..+
T Consensus        97 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l  143 (148)
T 3lv9_A           97 IIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEI  143 (148)
T ss_dssp             CEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHH
T ss_pred             CeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            32         122222     335554 469999999999995544

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.58  E-value=9.2e-15  Score=109.39  Aligned_cols=107  Identities=18%  Similarity=0.233  Sum_probs=81.9

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCCCccccCccCCcc-
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD-  158 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~-  158 (203)
                      .+.+|+++|++..++.++++++++.+|++.|.+++++++||+|++ |+++|+||.+|++++.. .+...+.++|.+... 
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-~~~~~v~~~m~~~~~v   81 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML-EPALDIRSLVRPAVFI   81 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-CTTSCGGGGCBCCCEE
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-cCCcCHHHHhCCCeEe
Confidence            567999999953378999999999999999999999999999985 89999999999997654 244567777765321 


Q ss_pred             -------chHHHH-----hhhcee-eCCcEEEEEehhhHHHHH
Q 028824          159 -------STWKVC-----EKCLSF-ENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       159 -------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L  188 (203)
                             ...+.+     ..+++. ++|+++|+||.+|++..+
T Consensus        82 ~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l  124 (129)
T 3jtf_A           82 PEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQI  124 (129)
T ss_dssp             ETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence                   122223     234554 469999999999995544

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.55  E-value=2.3e-14  Score=112.67  Aligned_cols=110  Identities=15%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCCCccccCccCC
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~  156 (203)
                      ..+...+|+++|+++.+++++++++++.+|++.|.+++++.+||+|++ |+++|+||.+||+++........+.++| .+
T Consensus        37 ~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~  115 (172)
T 3lhh_A           37 FRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVDLV-KN  115 (172)
T ss_dssp             ------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC-BC
T ss_pred             hccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh-cC
Confidence            346778999999943378999999999999999999999999999987 9999999999999876544456788888 44


Q ss_pred             cc---------chHHHH-----hhhcee-eCCcEEEEEehhhHHHHH
Q 028824          157 VD---------STWKVC-----EKCLSF-ENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       157 v~---------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L  188 (203)
                      +.         .....+     ..+++. ++|+++|+||..|++..+
T Consensus       116 ~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l  162 (172)
T 3lhh_A          116 CNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDAL  162 (172)
T ss_dssp             CEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             CeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHH
Confidence            32         122222     335554 469999999999994443

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.54  E-value=9e-15  Score=110.52  Aligned_cols=107  Identities=19%  Similarity=0.216  Sum_probs=82.0

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchh--hcCCCccccCccCCcc
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS--ISGSGRADNSMFPEVD  158 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~--~~~~~~v~~~m~~~v~  158 (203)
                      +.+|+++|+++.++.++.+++++.+|++.|.+++++++||+|++ |+++|+||.+||+++..  ......+.++|.+...
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~~~~~   81 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLRPATF   81 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCBCCCE
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcCCCeE
Confidence            56899999954378999999999999999999999999999987 89999999999998754  2234467788866321


Q ss_pred             --------chHHHH-----hhhcee-eCCcEEEEEehhhHHHHH
Q 028824          159 --------STWKVC-----EKCLSF-ENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       159 --------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L  188 (203)
                              .....+     ..+++. ++|+++|+||.+|++..+
T Consensus        82 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l  125 (136)
T 3lfr_A           82 VPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQI  125 (136)
T ss_dssp             EETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC
T ss_pred             ECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence                    122222     335554 579999999999994443

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.54  E-value=2.5e-14  Score=110.64  Aligned_cols=117  Identities=20%  Similarity=0.165  Sum_probs=89.4

Q ss_pred             cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh---cCCCccccCc
Q 028824           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---SGSGRADNSM  153 (203)
Q Consensus        77 ~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~---~~~~~v~~~m  153 (203)
                      ...+..++|+++|++  . +++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||+++...   .....+.++|
T Consensus        11 ~~~l~~~~v~~im~~--~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m   87 (159)
T 3fv6_A           11 ADKLKKLQVKDFQSI--P-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIM   87 (159)
T ss_dssp             HHHHTTCBGGGSCBC--C-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSCTTTCBGGGTS
T ss_pred             HHHHhhCCHHHHcCC--C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCcccCcCHHHHH
Confidence            455678899999987  4 599999999999999999999999999988999999999999975422   2345678888


Q ss_pred             cC--Cccc---------hHHHH-----hhhcee-eCC---cEEEEEehhhHHHHHHHHhcccc
Q 028824          154 FP--EVDS---------TWKVC-----EKCLSF-ENY---ICLGSLSLKFLTFLLIFVNGLKA  196 (203)
Q Consensus       154 ~~--~v~~---------~~~~~-----~~llv~-~~g---~lvGiVt~~DI~~~L~a~~~l~~  196 (203)
                      .+  ++..         ..+.+     ..++|. ++|   +++|+|+..|++..+..+.....
T Consensus        88 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~~~~  150 (159)
T 3fv6_A           88 TRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSENEI  150 (159)
T ss_dssp             EETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHTTCC
T ss_pred             cCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhhcch
Confidence            75  4321         12222     335554 456   99999999999777766655433

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.54  E-value=6.2e-14  Score=104.41  Aligned_cols=106  Identities=17%  Similarity=0.092  Sum_probs=83.8

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCC--CccccCccCCcc
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS--GRADNSMFPEVD  158 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~--~~v~~~m~~~v~  158 (203)
                      ..++++++|++  ++.++.+++++.+|++.|.+++++.+||+|+ |+++|+||.+|++++......  ..+.++|.+++.
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~   79 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLETVR   79 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBCCC
T ss_pred             cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCcccCcHHHHccCCCc
Confidence            56799999999  8999999999999999999999999999998 999999999999976543221  457777766432


Q ss_pred             ---------chHHHH-----hhhcee-eCCcEEEEEehhhHHHHHH
Q 028824          159 ---------STWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       159 ---------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~  189 (203)
                               ...+.+     ..+++. ++|+++|+|+..|++..+.
T Consensus        80 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                     223333     335555 5899999999999955543

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.54  E-value=7.3e-15  Score=109.92  Aligned_cols=109  Identities=19%  Similarity=0.218  Sum_probs=80.7

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhc-CCCccccCccCCc
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS-GSGRADNSMFPEV  157 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~~v  157 (203)
                      +...+|+++|++..+++++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|++++.... ....+.++|.+..
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m~~~~   82 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVMRPIQ   82 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHSEECC
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHhcCCc
Confidence            5678999999964467799999999999999999999999999987 8999999999999875432 3456677775422


Q ss_pred             c--------chHHHH-----hhhcee-eCCcEEEEEehhhHHHHH
Q 028824          158 D--------STWKVC-----EKCLSF-ENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       158 ~--------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L  188 (203)
                      .        ...+.+     ..+++. ++|+++|+||..|++..+
T Consensus        83 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l  127 (130)
T 3i8n_A           83 VVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL  127 (130)
T ss_dssp             EEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             CcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            1        122222     335544 579999999999995443

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.54  E-value=3.3e-14  Score=112.53  Aligned_cols=109  Identities=16%  Similarity=0.068  Sum_probs=82.4

Q ss_pred             CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCCCccccCccCCc
Q 028824           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (203)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v  157 (203)
                      .+...+|+++|+++.+++++++++++.+|++.|.+++++++||+|++ |+++|+||.+||+++........+. ++.+..
T Consensus        32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~~~~v~-~~~~~~  110 (173)
T 3ocm_A           32 TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRN-RLRDPI  110 (173)
T ss_dssp             HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSSCCGG-GSBCCC
T ss_pred             ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCCcchhH-hcCCCe
Confidence            45788999999864478999999999999999999999999999876 8999999999999775433344555 443322


Q ss_pred             c--------chHHHH-----hhhce-eeCCcEEEEEehhhHHHHH
Q 028824          158 D--------STWKVC-----EKCLS-FENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       158 ~--------~~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L  188 (203)
                      .        .....+     ..++| +++|+++|+||..|++..+
T Consensus       111 ~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l  155 (173)
T 3ocm_A          111 IVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAI  155 (173)
T ss_dssp             EECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHH
T ss_pred             EECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHH
Confidence            1        122222     23455 4579999999999994443

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.53  E-value=4.6e-14  Score=109.80  Aligned_cols=111  Identities=20%  Similarity=0.154  Sum_probs=87.9

Q ss_pred             cCCCCccccccccccC-CCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh----cCCCcccc
Q 028824           77 APSSGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----SGSGRADN  151 (203)
Q Consensus        77 ~~~~~~~~V~diM~~~-~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~----~~~~~v~~  151 (203)
                      ..++..++|+++|+++ .++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||+++...    .....+.+
T Consensus        18 ~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~   97 (165)
T 3fhm_A           18 YFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSV   97 (165)
T ss_dssp             CCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGG
T ss_pred             hHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHH
Confidence            4667889999999962 269999999999999999999999999999999999999999999976432    23456788


Q ss_pred             CccCCccc---------hHHHH-----hhhceeeCCcEEEEEehhhHHHH
Q 028824          152 SMFPEVDS---------TWKVC-----EKCLSFENYICLGSLSLKFLTFL  187 (203)
Q Consensus       152 ~m~~~v~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~~  187 (203)
                      +|.+++..         ..+.+     ..++|.++|+++|+|+..|++..
T Consensus        98 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~  147 (165)
T 3fhm_A           98 AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKA  147 (165)
T ss_dssp             TSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHH
Confidence            88765421         12222     34667667999999999999443

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.53  E-value=2.7e-14  Score=110.17  Aligned_cols=117  Identities=16%  Similarity=0.171  Sum_probs=87.5

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh--------cCCCcc
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--------SGSGRA  149 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~--------~~~~~v  149 (203)
                      ..+...+|+++|+++.++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||++....        .....+
T Consensus         9 ~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v   88 (159)
T 1yav_A            9 DQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITV   88 (159)
T ss_dssp             --CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBH
T ss_pred             HHHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCH
Confidence            445678999999864468999999999999999999999999999988999999999999976432        234466


Q ss_pred             ccCccCCccc---------hHHHH---hhhceee-CCcEEEEEehhhHHHHHHHHhcc
Q 028824          150 DNSMFPEVDS---------TWKVC---EKCLSFE-NYICLGSLSLKFLTFLLIFVNGL  194 (203)
Q Consensus       150 ~~~m~~~v~~---------~~~~~---~~llv~~-~g~lvGiVt~~DI~~~L~a~~~l  194 (203)
                      .++|.+++..         ..+.+   ..+++.+ +|+++|+|+..|++..+......
T Consensus        89 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~~~  146 (159)
T 1yav_A           89 EEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRRVVLKELNKHIRS  146 (159)
T ss_dssp             HHHSBCSCCEEETTSBHHHHHHHTTTCSEEEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred             HHhcCCCCceEcCCCCHHHHHHHHHhCCEEEEEeCCCeEEEEEEHHHHHHHHHHHHHh
Confidence            7777654421         11222   1245554 79999999999997777655443

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.53  E-value=2.9e-14  Score=110.55  Aligned_cols=110  Identities=22%  Similarity=0.219  Sum_probs=86.4

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh-----------cCCCcc
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-----------SGSGRA  149 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~-----------~~~~~v  149 (203)
                      ..++|+++|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||+++...           .....+
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v   80 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL   80 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCH
Confidence            45789999998  89999999999999999999999999999988999999999999976431           233456


Q ss_pred             ccCccCCcc---------chHHHH-----hhhceeeCCcEEEEEehhhHHHHHHHHh
Q 028824          150 DNSMFPEVD---------STWKVC-----EKCLSFENYICLGSLSLKFLTFLLIFVN  192 (203)
Q Consensus       150 ~~~m~~~v~---------~~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L~a~~  192 (203)
                      .++|.+++.         .....+     ..++|.++|+++|+|+..|++..+....
T Consensus        81 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~~~~~~  137 (160)
T 2o16_A           81 FEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLL  137 (160)
T ss_dssp             HHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred             HHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHHHh
Confidence            677765432         122222     3466767799999999999987766544

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.52  E-value=2.2e-14  Score=106.87  Aligned_cols=106  Identities=23%  Similarity=0.287  Sum_probs=81.0

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhh-cCCCccccCccCCcc-
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSI-SGSGRADNSMFPEVD-  158 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~-~~~~~v~~~m~~~v~-  158 (203)
                      +++|+++|++..++.++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|++++... .....+.++|.+... 
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m~~~~~v   81 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRTAVVV   81 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHCBCCCEE
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHcCCCeEE
Confidence            46899999963259999999999999999999999999999987 899999999999976432 234466777755321 


Q ss_pred             -------chHHHH-----hhhcee-eCCcEEEEEehhhHHHH
Q 028824          159 -------STWKVC-----EKCLSF-ENYICLGSLSLKFLTFL  187 (203)
Q Consensus       159 -------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~  187 (203)
                             .....+     ..+++. ++|+++|+||..|++..
T Consensus        82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~  123 (127)
T 3nqr_A           82 PESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILEL  123 (127)
T ss_dssp             ETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             CCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence                   122222     235554 57999999999999443

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.52  E-value=4.6e-14  Score=103.63  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=81.6

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCccc---
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS---  159 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~~---  159 (203)
                      ++|+++|++  ++.++++++++.+|++.|.+++++.+||+|++|+++|+|+.+|++++... +...+.++|.+++..   
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~-~~~~v~~~~~~~~~~v~~   77 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ-NKKTIEEIMTRNVITAHE   77 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT-TCCBGGGTSBSSCCCEET
T ss_pred             CchHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh-cccCHHHHhcCCCeEECC
Confidence            368999998  89999999999999999999999999999989999999999999976443 234677888665421   


Q ss_pred             ------hHHHH-----hhhceee-CCcEEEEEehhhHHHHH
Q 028824          160 ------TWKVC-----EKCLSFE-NYICLGSLSLKFLTFLL  188 (203)
Q Consensus       160 ------~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~L  188 (203)
                            ..+.+     ..+++.+ +|+++|+|+..|++..+
T Consensus        78 ~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           78 DEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLF  118 (122)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHh
Confidence                  12222     3355554 59999999999995443

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.52  E-value=1.6e-14  Score=108.53  Aligned_cols=106  Identities=9%  Similarity=-0.037  Sum_probs=79.4

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC-CCeEEEEEehHHHhhchhhcC---CCccccCccCCcc
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISG---SGRADNSMFPEVD  158 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~-~g~lvGiVt~~Dll~~~~~~~---~~~v~~~m~~~v~  158 (203)
                      ++|+++|+++.+++++++++++.+|++.|.+++++++||+|+ +|+++|+||.+|++++.....   ...+.++|.+...
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m~~~~~   81 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAADEIYF   81 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHSBCCCE
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhccCCeE
Confidence            589999986447899999999999999999999999999975 589999999999998754322   1235566643221


Q ss_pred             --------chHHHH-----hhhcee-eCCcEEEEEehhhHHHHH
Q 028824          159 --------STWKVC-----EKCLSF-ENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       159 --------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L  188 (203)
                              ...+.+     ..+++. ++|+++|+||.+|++..+
T Consensus        82 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l  125 (130)
T 3hf7_A           82 VPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI  125 (130)
T ss_dssp             EETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             eCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHH
Confidence                    122222     235554 579999999999995444

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.52  E-value=1.6e-13  Score=102.95  Aligned_cols=109  Identities=22%  Similarity=0.209  Sum_probs=84.5

Q ss_pred             CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh-chhh--cCCCccccCccC
Q 028824           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSI--SGSGRADNSMFP  155 (203)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~-~~~~--~~~~~v~~~m~~  155 (203)
                      .+...+|+++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++ +...  .....+.++|.+
T Consensus         3 ~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~   80 (138)
T 2yzi_A            3 MDMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTR   80 (138)
T ss_dssp             CCTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBC
T ss_pred             chhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHhhC
Confidence            4577899999998  8999999999999999999999999999998899999999999973 3322  234567788876


Q ss_pred             Cccc---------hHHHH-----hhhceeeCCcEEEEEehhhHHHHHH
Q 028824          156 EVDS---------TWKVC-----EKCLSFENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       156 ~v~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L~  189 (203)
                      ++..         ....+     ..++++++|+++|+|+..|++..+.
T Consensus        81 ~~~~v~~~~~l~~~~~~m~~~~~~~lVvd~~g~~~Giit~~dil~~~~  128 (138)
T 2yzi_A           81 NLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASR  128 (138)
T ss_dssp             SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHhcCCCEEEECCCCCEEEEEEHHHHHHHHH
Confidence            5421         12222     3353445899999999999954443

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.52  E-value=3.1e-14  Score=108.51  Aligned_cols=113  Identities=20%  Similarity=0.186  Sum_probs=87.3

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh--------cCCCcc
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--------SGSGRA  149 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~--------~~~~~v  149 (203)
                      ..+..++|+++|++..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||+++...        .....+
T Consensus        10 ~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v   89 (150)
T 3lqn_A           10 DEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKV   89 (150)
T ss_dssp             HHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBG
T ss_pred             HhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCH
Confidence            345788999999953369999999999999999999999999999999999999999999976431        133467


Q ss_pred             ccCccCCccc---------hHHHH---hhhceee-CCcEEEEEehhhHHHHHHH
Q 028824          150 DNSMFPEVDS---------TWKVC---EKCLSFE-NYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       150 ~~~m~~~v~~---------~~~~~---~~llv~~-~g~lvGiVt~~DI~~~L~a  190 (203)
                      .++|.+++..         ..+.+   ..+++.+ +|+++|+|+..|++..+..
T Consensus        90 ~~~m~~~~~~v~~~~~l~~a~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           90 EQVMKQDIPVLKLEDSFAKALEMTIDHPFICAVNEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             GGTCBSSCCEEETTCBHHHHHHHHHHCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             HHHhcCCCceeCCCCCHHHHHHHHHhCCEEEEECCCCcEEEEEEHHHHHHHHHH
Confidence            7888765421         12222   2245554 8999999999999666654

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.51  E-value=1.5e-13  Score=102.47  Aligned_cols=108  Identities=17%  Similarity=0.201  Sum_probs=84.3

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc--CCCccccCccCCcc
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--GSGRADNSMFPEVD  158 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~--~~~~v~~~m~~~v~  158 (203)
                      ...+|+++|++  ++.++.+++++.+|++.|.+++++.+||+| +|+++|+|+.+|+++.....  ....+.++|.+++.
T Consensus         2 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~~   78 (133)
T 2ef7_A            2 EEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLI   78 (133)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECCC
T ss_pred             CcccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCCcccCHHHHcCCCCE
Confidence            56799999998  899999999999999999999999999999 89999999999998764332  24567788865432


Q ss_pred             c---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHHHHH
Q 028824          159 S---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLIFV  191 (203)
Q Consensus       159 ~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~a~  191 (203)
                      .         ..+.+     ..+++. ++|+++|+|+..|++..+...
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  126 (133)
T 2ef7_A           79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (133)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence            1         22222     235555 479999999999996665543

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.50  E-value=2.7e-14  Score=109.83  Aligned_cols=110  Identities=20%  Similarity=0.280  Sum_probs=85.4

Q ss_pred             CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEE-eC-CCeEEEEEehHHHhhchhhcCCCccccCccCC
Q 028824           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (203)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVv-d~-~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~  156 (203)
                      .+...+|+++|+++.+++++++++++.+|++.|.+++++.+||+ |+ +|+++|+||.+||+++........+.++| .+
T Consensus        16 ~l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~~~~v~~~m-~~   94 (153)
T 3oco_A           16 EMNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDDKAKISTIM-RD   94 (153)
T ss_dssp             HHHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHTTSBGGGTC-BC
T ss_pred             ccCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCCCCcHHHHh-CC
Confidence            34678999999964478999999999999999999999999999 64 48999999999999875544466788888 44


Q ss_pred             cc---------chHHHH-----hhhcee-eCCcEEEEEehhhHHHHHH
Q 028824          157 VD---------STWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       157 v~---------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~  189 (203)
                      +.         .....+     ..+++. ++|+++|+||..|++..+.
T Consensus        95 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~  142 (153)
T 3oco_A           95 IVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELF  142 (153)
T ss_dssp             CEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHH
T ss_pred             CeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHh
Confidence            32         122222     335554 4699999999999954443

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.50  E-value=1.4e-13  Score=105.39  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=86.0

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh--------cCCCcc
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--------SGSGRA  149 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~--------~~~~~v  149 (203)
                      ..+..++|+++|++..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++....        .....+
T Consensus         6 ~~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v   85 (157)
T 2emq_A            6 NEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKV   85 (157)
T ss_dssp             ----CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBG
T ss_pred             hhHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcH
Confidence            345778999999853368899999999999999999999999999988999999999999976432        134567


Q ss_pred             ccCccCCccc---------hHHHH---hhhcee-eCCcEEEEEehhhHHHHHHHHh
Q 028824          150 DNSMFPEVDS---------TWKVC---EKCLSF-ENYICLGSLSLKFLTFLLIFVN  192 (203)
Q Consensus       150 ~~~m~~~v~~---------~~~~~---~~llv~-~~g~lvGiVt~~DI~~~L~a~~  192 (203)
                      .++|.+++..         ....+   ..+++. ++|+++|+|+..|++..+....
T Consensus        86 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~  141 (157)
T 2emq_A           86 EEVMNRNIPRLRLDDSLMKAVGLIVNHPFVCVENDDGYFAGIFTRREVLKQLNKQL  141 (157)
T ss_dssp             GGTCBCCCCEEETTSBHHHHHHHHHHSSEEEEECSSSSEEEEEEHHHHHHHHHHTT
T ss_pred             HHHhCCCCceecCCCcHHHHHHHHhhCCEEEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence            7888765421         12222   124554 4799999999999977666543

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.50  E-value=9.4e-14  Score=105.20  Aligned_cols=109  Identities=55%  Similarity=0.793  Sum_probs=82.1

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh----------------hc
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS----------------IS  144 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~----------------~~  144 (203)
                      ..++|+++|++..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++...                ..
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~   82 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKT   82 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC----
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHh
Confidence            45799999998556899999999999999999999999999998899999999999986421                11


Q ss_pred             CCCccccCccCCcc---------chHHHH-----hhhcee-eCCcEEEEEehhhHHHHHH
Q 028824          145 GSGRADNSMFPEVD---------STWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       145 ~~~~v~~~m~~~v~---------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~  189 (203)
                      ....+.++|.+++.         ...+.+     ..+++. ++|+++|+|+..|++..+.
T Consensus        83 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           83 NGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             -CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence            23456677766432         122222     235555 4799999999999944443

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.48  E-value=1.4e-13  Score=101.31  Aligned_cols=103  Identities=18%  Similarity=0.166  Sum_probs=80.2

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCcc-
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEVD-  158 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v~-  158 (203)
                      ++|+++|++  ++.++.+++++.+|++.|.+++++.+||+| +|+++|+|+.+|+++.....   ....+.++|.+++. 
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~~~   77 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVT   77 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGE
T ss_pred             CCHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCCeE
Confidence            478999998  899999999999999999999999999999 89999999999999764332   24466777765432 


Q ss_pred             --------chHHHH-----hhhceeeCCcEEEEEehhhHHHHH
Q 028824          159 --------STWKVC-----EKCLSFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       159 --------~~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L  188 (203)
                              ...+.+     ..+++.++|+++|+|+..|++..+
T Consensus        78 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l  120 (125)
T 1pbj_A           78 ISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAK  120 (125)
T ss_dssp             ECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHH
Confidence                    112222     346666669999999999995443

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.47  E-value=1e-13  Score=108.13  Aligned_cols=111  Identities=45%  Similarity=0.686  Sum_probs=84.2

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh-------------------
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-------------------  142 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~-------------------  142 (203)
                      .++|+++|+++.+++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||+++..                   
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CC
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            4689999997556899999999999999999999999999999999999999999986421                   


Q ss_pred             -----------hcCCCccccCccCCccc---------hHHHH-----hhhceee-CCcEEEEEehhhHHHHHHHHh
Q 028824          143 -----------ISGSGRADNSMFPEVDS---------TWKVC-----EKCLSFE-NYICLGSLSLKFLTFLLIFVN  192 (203)
Q Consensus       143 -----------~~~~~~v~~~m~~~v~~---------~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~L~a~~  192 (203)
                                 ......+.++|.+.+..         ..+.+     ..++|.+ +|+++|+|+..|++..+....
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~  158 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIK  158 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHh
Confidence                       11234566777664321         22222     3355554 899999999999977665543

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.47  E-value=7.2e-14  Score=108.01  Aligned_cols=106  Identities=19%  Similarity=0.244  Sum_probs=82.4

Q ss_pred             CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCC-eEEEEEehHHHhhchhhcCCCccccCccCCc
Q 028824           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (203)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g-~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v  157 (203)
                      .+...+|+++|+++.+++++++++++.+|++.|.+++++.+||+|+++ +++|+||.+|++++........+.++|.+..
T Consensus        34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im~~~~  113 (156)
T 3oi8_A           34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKSILRPAV  113 (156)
T ss_dssp             HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHCBCCC
T ss_pred             ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHcCCCE
Confidence            457889999999754689999999999999999999999999999874 9999999999997643323445677776522


Q ss_pred             c--------chHHHH-----hhhcee-eCCcEEEEEehhhH
Q 028824          158 D--------STWKVC-----EKCLSF-ENYICLGSLSLKFL  184 (203)
Q Consensus       158 ~--------~~~~~~-----~~llv~-~~g~lvGiVt~~DI  184 (203)
                      .        .....+     ..+++. ++|+++|+||..|+
T Consensus       114 ~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Di  154 (156)
T 3oi8_A          114 FVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDI  154 (156)
T ss_dssp             EEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHH
T ss_pred             EECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHh
Confidence            1        122222     234554 57999999999998

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.46  E-value=3.4e-13  Score=101.80  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCC--eEEEEEehHHHhhchhhc--CCCccccCccCCc
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSIS--GSGRADNSMFPEV  157 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g--~lvGiVt~~Dll~~~~~~--~~~~v~~~m~~~v  157 (203)
                      .++|+++|++  ++.++.+++++.+|++.|.+++++.+||+|++|  +++|+||.+|++++....  ....+.++|.+++
T Consensus         4 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~   81 (141)
T 2rih_A            4 AIRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   81 (141)
T ss_dssp             -CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             ceEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCCC
Confidence            3689999998  899999999999999999999999999999888  999999999999764321  2456777776543


Q ss_pred             c-----c---hHHHH-----hhhcee-eCCcEEEEEehhhHHHHHHHHh
Q 028824          158 D-----S---TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLIFVN  192 (203)
Q Consensus       158 ~-----~---~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~a~~  192 (203)
                      .     .   ..+.+     ..+++. ++|+++|+|+..|++..+....
T Consensus        82 ~~v~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~  130 (141)
T 2rih_A           82 TVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILL  130 (141)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHHHH
T ss_pred             eEEcCCCHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHHHH
Confidence            2     1   11222     235555 4799999999999966555433

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.46  E-value=2.3e-13  Score=106.78  Aligned_cols=113  Identities=22%  Similarity=0.254  Sum_probs=85.9

Q ss_pred             CCccccccccccCCC--eEEE--cCCCCHHHHHHHHHHCCCcEEEEE--eCCCeEEEEEehHHHhhchhh----------
Q 028824           80 SGVYTVGDFMTTKEE--LHVV--KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSI----------  143 (203)
Q Consensus        80 ~~~~~V~diM~~~~~--~~~v--~~~~ti~ea~~~m~~~~~~~lPVv--d~~g~lvGiVt~~Dll~~~~~----------  143 (203)
                      +...+|+++|++..+  ++++  .+++++.+|++.|.+++++.+||+  |++|+++|+||.+|+++....          
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~   87 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS   87 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccc
Confidence            467899999998211  7788  999999999999999999999999  778999999999999976432          


Q ss_pred             -----------------cCCCccccCccCCccc---------hHHHH-----hhhceeeCCcEEEEEehhhHHHHHHHHh
Q 028824          144 -----------------SGSGRADNSMFPEVDS---------TWKVC-----EKCLSFENYICLGSLSLKFLTFLLIFVN  192 (203)
Q Consensus       144 -----------------~~~~~v~~~m~~~v~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L~a~~  192 (203)
                                       .....+.++|.+++..         ....+     ..++|.++|+++|+||..|++..+....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGiit~~dll~~l~~~~  167 (185)
T 2j9l_A           88 TSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQMA  167 (185)
T ss_dssp             TCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHHHC
T ss_pred             cceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEEEEHHHHHHHHHHhh
Confidence                             1234577777654421         12222     4467777999999999999976665543

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.46  E-value=7e-13  Score=107.85  Aligned_cols=107  Identities=14%  Similarity=0.161  Sum_probs=86.2

Q ss_pred             CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHC---CCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccC
Q 028824           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (203)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~---~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~  155 (203)
                      .+.+.+|+++|++  +++++++++|+.+|++.|.++   +++.+||+|++|+++|+||.+||+...   ....+.++|.+
T Consensus        50 ~~~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~---~~~~v~~im~~  124 (205)
T 3kxr_A           50 QYSENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE---PHEPLISLLSE  124 (205)
T ss_dssp             HSCTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC---TTSBGGGGCCS
T ss_pred             CCCcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC---CcchHHHHhcC
Confidence            4567799999999  999999999999999999997   899999999999999999999998642   34568888876


Q ss_pred             Cccc---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHHHH
Q 028824          156 EVDS---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       156 ~v~~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~a  190 (203)
                      ++..         ....+     ..++|. ++|+++|+||..|++..+..
T Consensus       125 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          125 DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            5431         22233     234554 57999999999999877764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.45  E-value=2.5e-13  Score=104.37  Aligned_cols=111  Identities=14%  Similarity=0.192  Sum_probs=84.9

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC--CCeEEEEEehHHHhhchhhc-------CCCccc
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSIS-------GSGRAD  150 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~--~g~lvGiVt~~Dll~~~~~~-------~~~~v~  150 (203)
                      ...++|+++|++  ++.++.+++++.+|++.|.+++++.+||+|+  +|+++|+||.+||+++....       ....+.
T Consensus        10 ~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~   87 (164)
T 2pfi_A           10 SHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQ   87 (164)
T ss_dssp             CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHH
T ss_pred             ccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhh
Confidence            457899999998  8999999999999999999999999999996  79999999999999764321       123455


Q ss_pred             cCccCC------cc---------chHHHH-----hhhceeeCCcEEEEEehhhHHHHHHHHh
Q 028824          151 NSMFPE------VD---------STWKVC-----EKCLSFENYICLGSLSLKFLTFLLIFVN  192 (203)
Q Consensus       151 ~~m~~~------v~---------~~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L~a~~  192 (203)
                      ++|...      +.         ...+.+     ..+++.++|+++|+||..|++..+....
T Consensus        88 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A           88 DILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             HHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHHHHHH
T ss_pred             hhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHhhh
Confidence            555543      11         122222     3466767899999999999977766544

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.45  E-value=1.1e-13  Score=103.24  Aligned_cols=104  Identities=17%  Similarity=0.204  Sum_probs=80.7

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHh-hchhhc---CCCccccCccCC
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSIS---GSGRADNSMFPE  156 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll-~~~~~~---~~~~v~~~m~~~  156 (203)
                      ..++|+++|.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|++ ++....   ....+.++|.++
T Consensus         6 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~   83 (133)
T 1y5h_A            6 TMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDS   83 (133)
T ss_dssp             --CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTC
T ss_pred             hhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCC
Confidence            45689999998  899999999999999999999999999999889999999999998 443322   234677777654


Q ss_pred             ccc---------hHHHH-----hhhceeeCCcEEEEEehhhHHH
Q 028824          157 VDS---------TWKVC-----EKCLSFENYICLGSLSLKFLTF  186 (203)
Q Consensus       157 v~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~  186 (203)
                      +..         ..+.+     ..+++.++|+++|+|+..|++.
T Consensus        84 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil~  127 (133)
T 1y5h_A           84 IYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIAR  127 (133)
T ss_dssp             CCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHH
Confidence            321         22222     3466766799999999999943

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.45  E-value=4.9e-13  Score=100.05  Aligned_cols=103  Identities=18%  Similarity=0.213  Sum_probs=80.7

Q ss_pred             cccccccc---cCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh-chhh---cCCCccccCccC
Q 028824           83 YTVGDFMT---TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSI---SGSGRADNSMFP  155 (203)
Q Consensus        83 ~~V~diM~---~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~-~~~~---~~~~~v~~~m~~  155 (203)
                      .+|+++|+   +  ++.++++++++.+|++.|.+++++.+||+| +|+++|+||.+|+++ ....   .....+.++|.+
T Consensus         6 ~~v~~im~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~   82 (135)
T 2rc3_A            6 KTVKHLLQEKGH--TVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR   82 (135)
T ss_dssp             CBHHHHHHHHCC--CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC
T ss_pred             eeHHHHHhcCCC--CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccC
Confidence            38999999   6  899999999999999999999999999999 899999999999985 3221   234467788876


Q ss_pred             Cccc---------hHHHH-----hhhceeeCCcEEEEEehhhHHHHH
Q 028824          156 EVDS---------TWKVC-----EKCLSFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       156 ~v~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L  188 (203)
                      ++..         ..+.+     ..+++.++|+++|+|+..|++..+
T Consensus        83 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~~~  129 (135)
T 2rc3_A           83 QVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDA  129 (135)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHHHH
Confidence            5421         12222     346666689999999999994443

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.45  E-value=2.5e-13  Score=101.72  Aligned_cols=109  Identities=24%  Similarity=0.254  Sum_probs=83.5

Q ss_pred             CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHH-hhchhh--cCCCccccCccC
Q 028824           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSI--SGSGRADNSMFP  155 (203)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dl-l~~~~~--~~~~~v~~~m~~  155 (203)
                      .+...+++++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+ ++....  .....+.++|.+
T Consensus         4 ~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~   81 (138)
T 2p9m_A            4 TLKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTK   81 (138)
T ss_dssp             -CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSCS
T ss_pred             ccccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhCC
Confidence            3567899999998  89999999999999999999999999999988999999999999 765332  223456677765


Q ss_pred             Ccc---------chHHHH----------hhhceee-CCcEEEEEehhhHHHHHH
Q 028824          156 EVD---------STWKVC----------EKCLSFE-NYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       156 ~v~---------~~~~~~----------~~llv~~-~g~lvGiVt~~DI~~~L~  189 (203)
                      ++.         .....+          ..+++.+ +|+++|+|+..|++..+.
T Consensus        82 ~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           82 DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            432         112222          2355554 899999999999955543

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.44  E-value=3.5e-13  Score=113.37  Aligned_cols=59  Identities=24%  Similarity=0.420  Sum_probs=54.4

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC--CeEEEEEehHHHhhc
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLAL  140 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~--g~lvGiVt~~Dll~~  140 (203)
                      ...++|+|+|++  +++++.+++++.+|+++|.++++++|||||++  |+++|+|+..||+++
T Consensus        10 ~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~   70 (250)
T 2d4z_A           10 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGL   70 (250)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHH
T ss_pred             cCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHH
Confidence            357799999999  99999999999999999999999999999864  689999999999965

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.44  E-value=3.4e-13  Score=103.00  Aligned_cols=104  Identities=21%  Similarity=0.236  Sum_probs=82.3

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCcc
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEVD  158 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v~  158 (203)
                      .++|+++|++..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||+++....   ....+.++|.+.+.
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~  106 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGGI  106 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESCC
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCCe
Confidence            369999998754689999999999999999999999999999899999999999999764332   23456777765432


Q ss_pred             ---------chHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824          159 ---------STWKVC-----EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       159 ---------~~~~~~-----~~llv~~~g~lvGiVt~~DI~  185 (203)
                               ...+.+     ..++|.++++++|+|+..|++
T Consensus       107 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil  147 (149)
T 3k2v_A          107 RIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLL  147 (149)
T ss_dssp             EECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHT
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhh
Confidence                     112222     346777777999999999993

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.43  E-value=5.9e-13  Score=102.53  Aligned_cols=108  Identities=20%  Similarity=0.231  Sum_probs=83.8

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcE-EEEEeCCCeEEEEEehHHHhhchh--------------
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG-FPVIDDDWKLVGLVSDYDLLALDS--------------  142 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~-lPVvd~~g~lvGiVt~~Dll~~~~--------------  142 (203)
                      ..+...+|+++|++  ++.++.+++++.+|++.|.+++++. +||+|++ +++|+||.+||+++..              
T Consensus        11 ~~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (157)
T 1o50_A           11 HHMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIR   87 (157)
T ss_dssp             TTCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC------
T ss_pred             hhhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHH
Confidence            44577899999998  8999999999999999999999999 9999987 9999999999997532              


Q ss_pred             ----hcCCCccccCccCCccc---------hHHHH-----hhhceee-CCcEEEEEehhhHHHHHH
Q 028824          143 ----ISGSGRADNSMFPEVDS---------TWKVC-----EKCLSFE-NYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       143 ----~~~~~~v~~~m~~~v~~---------~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~L~  189 (203)
                          ......+.++|.+ +..         ..+.+     ..+++.+ +|+++|+|+..|++..+.
T Consensus        88 ~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           88 SSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             -CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence                1223456677766 421         12222     3456655 899999999999955543

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.41  E-value=5.6e-13  Score=105.50  Aligned_cols=105  Identities=23%  Similarity=0.243  Sum_probs=82.7

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh----cCCCccccCccCCc
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----SGSGRADNSMFPEV  157 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~----~~~~~v~~~m~~~v  157 (203)
                      .++|+++|++  +++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++....    .....+.++|.+++
T Consensus         8 ~~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~   85 (184)
T 1pvm_A            8 FMRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI   85 (184)
T ss_dssp             CCBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred             ccCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCC
Confidence            3789999998  89999999999999999999999999999988999999999999975432    23346778887654


Q ss_pred             cc---------hHHHH-----hhhceee-CCcEEEEEehhhHHHHH
Q 028824          158 DS---------TWKVC-----EKCLSFE-NYICLGSLSLKFLTFLL  188 (203)
Q Consensus       158 ~~---------~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~L  188 (203)
                      ..         ....+     ..++|.+ +|+++|+|+..|++..+
T Consensus        86 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~  131 (184)
T 1pvm_A           86 PKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  131 (184)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             cEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            21         22222     3355555 49999999999996544

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.38  E-value=2e-12  Score=99.23  Aligned_cols=107  Identities=20%  Similarity=0.247  Sum_probs=82.1

Q ss_pred             cccccccccC----CCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc----CCCccccCcc
Q 028824           83 YTVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----GSGRADNSMF  154 (203)
Q Consensus        83 ~~V~diM~~~----~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~----~~~~v~~~m~  154 (203)
                      .+|+|+|+++    .++.++.+++++.+|++.|.+++++.+||+| +|+++|+||.+|++++....    ....+.++|.
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   85 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERSSKATRVEEIMT   85 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSB
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCCccccCHHHHcC
Confidence            5799999953    2679999999999999999999999999955 89999999999999764332    2446777776


Q ss_pred             CCccc---------hHHHH-----hhhceeeCCcEEEEEehhhHHHHHHH
Q 028824          155 PEVDS---------TWKVC-----EKCLSFENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       155 ~~v~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L~a  190 (203)
                      +++..         ..+.+     ..+++.++|+++|+|+..|++..+..
T Consensus        86 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           86 AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHT
T ss_pred             CCCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHH
Confidence            64421         22222     34667679999999999999555543

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.36  E-value=2.2e-12  Score=96.81  Aligned_cols=106  Identities=19%  Similarity=0.272  Sum_probs=79.3

Q ss_pred             Ccccccc---ccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc----CCCccccCc
Q 028824           81 GVYTVGD---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----GSGRADNSM  153 (203)
Q Consensus        81 ~~~~V~d---iM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~----~~~~v~~~m  153 (203)
                      ...++++   +|.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++.....    ....+.++|
T Consensus         6 ~~~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   83 (144)
T 2nyc_A            6 LKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEAL   83 (144)
T ss_dssp             GGSBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHH
T ss_pred             hhcchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHHHHH
Confidence            3456777   8887  899999999999999999999999999999889999999999999764321    234566666


Q ss_pred             cC------Ccc---------chHHHH-----hhhceee-CCcEEEEEehhhHHHHH
Q 028824          154 FP------EVD---------STWKVC-----EKCLSFE-NYICLGSLSLKFLTFLL  188 (203)
Q Consensus       154 ~~------~v~---------~~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~L  188 (203)
                      .+      ++.         ...+.+     ..+++.+ +|+++|+|+..|++..+
T Consensus        84 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l  139 (144)
T 2nyc_A           84 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  139 (144)
T ss_dssp             HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             hcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHH
Confidence            53      121         122222     3455554 79999999999995544

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.34  E-value=6.5e-12  Score=102.19  Aligned_cols=104  Identities=21%  Similarity=0.162  Sum_probs=82.9

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCccc--
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS--  159 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~~--  159 (203)
                      ..+++++|.+  +++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++...   ...+.++|.+++..  
T Consensus        12 ~~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~---~~~v~~im~~~~~~v~   86 (213)
T 1vr9_A           12 HMKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL---DSSVFNKVSLPDFFVH   86 (213)
T ss_dssp             -CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT---TSBSGGGCBCTTCCEE
T ss_pred             ccCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC---CCcHHHHccCCCEEEC
Confidence            3478999998  8999999999999999999999999999998899999999999987543   45678888765431  


Q ss_pred             -------hHHHH-----hhhceee-CCcEEEEEehhhHHHHHHH
Q 028824          160 -------TWKVC-----EKCLSFE-NYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       160 -------~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~L~a  190 (203)
                             ..+.+     ..+++.+ +|+++|+|+.+|++..+..
T Consensus        87 ~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A           87 EEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             TTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence                   12222     3456655 5999999999999666554

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.33  E-value=2.8e-12  Score=107.91  Aligned_cols=121  Identities=19%  Similarity=0.259  Sum_probs=93.8

Q ss_pred             cceEecccccC----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh
Q 028824           68 SGTLTANSAAP----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (203)
Q Consensus        68 ~g~~~~~~l~~----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~  143 (203)
                      .|.++.+++..    .....+++++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++....
T Consensus       137 vGivt~~dl~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~  214 (296)
T 3ddj_A          137 VGIVTEREFLLLYKDLDEIFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK  214 (296)
T ss_dssp             EEEEEHHHHGGGGGGSCCCCBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             EEEEeHHHHHHhhhcccccccHHHhhcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            78888887733    3456689999998  89999999999999999999999999999999999999999999976431


Q ss_pred             ---------cCCCccccCccCCcc---------chHHHH-----hhhceee-CCcEEEEEehhhHHHHHHH
Q 028824          144 ---------SGSGRADNSMFPEVD---------STWKVC-----EKCLSFE-NYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       144 ---------~~~~~v~~~m~~~v~---------~~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~L~a  190 (203)
                               .....+.++|.+++.         ...+.+     ..+++.+ +|+++|+||..|++..+..
T Consensus       215 ~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~  285 (296)
T 3ddj_A          215 AVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH  285 (296)
T ss_dssp             HHHHTCTHHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             HHhhcChhhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHH
Confidence                     123456677765432         122222     3456655 8999999999999766654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.32  E-value=6.1e-12  Score=107.08  Aligned_cols=107  Identities=22%  Similarity=0.157  Sum_probs=85.5

Q ss_pred             CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHC-----CCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCc
Q 028824           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  153 (203)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~-----~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m  153 (203)
                      .+...+|+++|++  +++++.+++++.+|++.|.++     +++.+||+|++|+++|+||.+|++...   ....+.++|
T Consensus       133 ~~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~---~~~~v~~im  207 (286)
T 2oux_A          133 HYEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND---DDTLIADIL  207 (286)
T ss_dssp             TSCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC---TTSBHHHHS
T ss_pred             cCChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC---CCCcHHHHc
Confidence            5678899999998  899999999999999999987     889999999899999999999998652   345677777


Q ss_pred             cCCccc---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHHHH
Q 028824          154 FPEVDS---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       154 ~~~v~~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~a  190 (203)
                      .+++..         ....+     ..++|. ++|+++|+||..|++..+..
T Consensus       208 ~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          208 NERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             BSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             CCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            654421         22222     235555 47999999999999777654

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.31  E-value=1.2e-11  Score=104.41  Aligned_cols=105  Identities=24%  Similarity=0.219  Sum_probs=83.3

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHC-----CCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCcc
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  154 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~-----~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~  154 (203)
                      +...+++++|++  +++++.+++++.+|++.|.++     +++.+||+|++|+++|+||.+|++..   .....+.++|.
T Consensus       132 ~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~---~~~~~v~~im~  206 (278)
T 2yvy_A          132 YEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---DPRTRVAEIMN  206 (278)
T ss_dssp             SCTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS---CTTCBSTTTSB
T ss_pred             CCcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC---CCCCcHHHHhC
Confidence            456799999998  899999999999999999987     78999999988999999999999864   23457888886


Q ss_pred             CCccc---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHHH
Q 028824          155 PEVDS---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       155 ~~v~~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~  189 (203)
                      +++..         ....+     ..++|. ++|+++|+||..|++..+.
T Consensus       207 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          207 PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC-
T ss_pred             CCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence            65421         22222     235554 5799999999999966554

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.30  E-value=1.8e-11  Score=101.43  Aligned_cols=105  Identities=18%  Similarity=0.265  Sum_probs=84.1

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc--CCCccccCccCCccc
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--GSGRADNSMFPEVDS  159 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~--~~~~v~~~m~~~v~~  159 (203)
                      ..+++++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.....  ....+.++|.+++..
T Consensus        83 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~  160 (280)
T 3kh5_A           83 NEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIV  160 (280)
T ss_dssp             TSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCC
T ss_pred             hhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeE
Confidence            4589999998  899999999999999999999999999999999999999999999764332  233677788654421


Q ss_pred             ---------hHHHH-----hhhceeeCCcEEEEEehhhHHHHH
Q 028824          160 ---------TWKVC-----EKCLSFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       160 ---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L  188 (203)
                               ..+.+     ..+++.++|+++|+|+..|++..+
T Consensus       161 v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~~~~  203 (280)
T 3kh5_A          161 ATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLL  203 (280)
T ss_dssp             BCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence                     12222     346666899999999999996655

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.30  E-value=3.5e-12  Score=117.25  Aligned_cols=109  Identities=20%  Similarity=0.181  Sum_probs=85.2

Q ss_pred             CCccccccccccCCCeEEEcCC-CCHHHHHHHHHHCCCcEEEEEe-CCCeEEEEEehHHHhhchhh---cCCCccccCcc
Q 028824           80 SGVYTVGDFMTTKEELHVVKPT-TTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSI---SGSGRADNSMF  154 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~-~ti~ea~~~m~~~~~~~lPVvd-~~g~lvGiVt~~Dll~~~~~---~~~~~v~~~m~  154 (203)
                      +...+|+++|++  +++++.++ +++.+|+++|.+++++.+||+| ++|+++|+||.+||++....   .....+.++|.
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~  458 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALN  458 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHhc
Confidence            446899999998  89999999 9999999999999999999999 78999999999999976432   23457888997


Q ss_pred             CCccc---------hHHHHh---hhce-eeC----CcEEEEEehhhHHHHHHH
Q 028824          155 PEVDS---------TWKVCE---KCLS-FEN----YICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       155 ~~v~~---------~~~~~~---~llv-~~~----g~lvGiVt~~DI~~~L~a  190 (203)
                      +++..         ....+.   ..+| +++    |+++|+||..|++..+..
T Consensus       459 ~~~~~v~~~~~l~~a~~~m~~~~~~pVVd~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          459 KRVIRLNESEILGKLARVLEVDPSVLILGKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             TTCCEEETTSBHHHHHHHHTTCSEEEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             CCCeEECCCCcHHHHHHHHhhCCEEEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence            76531         122221   1334 442    899999999999555543

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.30  E-value=9.8e-12  Score=104.58  Aligned_cols=120  Identities=21%  Similarity=0.225  Sum_probs=93.4

Q ss_pred             cceEecccccCCC----------------CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEE
Q 028824           68 SGTLTANSAAPSS----------------GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (203)
Q Consensus        68 ~g~~~~~~l~~~~----------------~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGi  131 (203)
                      .|.++.+++...+                ...+++++|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|+
T Consensus        62 ~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGi  139 (296)
T 3ddj_A           62 EGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGI  139 (296)
T ss_dssp             EEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEE
T ss_pred             EEEEeHHHHHHHhcccccccccchhhHHHhcccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEE
Confidence            7888887774333                25689999998  89999999999999999999999999999989999999


Q ss_pred             EehHHHhhchhh-cCCCccccCccCCccc---------hHHHH-----hhhceee-CCcEEEEEehhhHHHHHH
Q 028824          132 VSDYDLLALDSI-SGSGRADNSMFPEVDS---------TWKVC-----EKCLSFE-NYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       132 Vt~~Dll~~~~~-~~~~~v~~~m~~~v~~---------~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~L~  189 (203)
                      ||.+|+++.... .....+.++|.+++..         ..+.+     ..+++.+ +|+++|+|+..|++..+.
T Consensus       140 vt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          140 VTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             EEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             EeHHHHHHhhhcccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            999999976443 2344677777654421         12222     3355554 899999999999977665

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.30  E-value=5.4e-12  Score=104.09  Aligned_cols=58  Identities=22%  Similarity=0.396  Sum_probs=54.5

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ..+|+|+|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|++++.
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~   63 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATY   63 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHH
Confidence            4689999998  899999999999999999999999999999889999999999999753

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.29  E-value=7.4e-12  Score=104.15  Aligned_cols=120  Identities=20%  Similarity=0.160  Sum_probs=89.7

Q ss_pred             cceEecccccC-CC------CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHh--
Q 028824           68 SGTLTANSAAP-SS------GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL--  138 (203)
Q Consensus        68 ~g~~~~~~l~~-~~------~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll--  138 (203)
                      .|.++.+++.. .+      ...+++++|.+  ++.++++++++.++++.|.+++++.+||+|++|+++|+||.+|++  
T Consensus       104 ~Giit~~di~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~  181 (282)
T 2yzq_A          104 VGILTVGDIIRRYFAKSEKYKGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRD  181 (282)
T ss_dssp             EEEEEHHHHHHHTTTTCSGGGGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGC
T ss_pred             EEEEEHHHHHHHHHhccCCcccCcHHHHhCC--CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhh
Confidence            78888887743 22      35689999987  899999999999999999999999999999889999999999999  


Q ss_pred             ----hchh------h---------------------cCCCccccCccCCccc---------hHHHH-----hhhceeeC-
Q 028824          139 ----ALDS------I---------------------SGSGRADNSMFPEVDS---------TWKVC-----EKCLSFEN-  172 (203)
Q Consensus       139 ----~~~~------~---------------------~~~~~v~~~m~~~v~~---------~~~~~-----~~llv~~~-  172 (203)
                          +...      .                     .....+.++|.+++..         +...+     ..+++.++ 
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  261 (282)
T 2yzq_A          182 SEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGE  261 (282)
T ss_dssp             GGGCC--------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETT
T ss_pred             hhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCC
Confidence                4331      0                     1234577888775531         11222     44666655 


Q ss_pred             CcEEEEEehhhHHHHHHHHh
Q 028824          173 YICLGSLSLKFLTFLLIFVN  192 (203)
Q Consensus       173 g~lvGiVt~~DI~~~L~a~~  192 (203)
                      |+++|+||..|+   ++++.
T Consensus       262 ~~lvGiit~~Di---l~~~~  278 (282)
T 2yzq_A          262 GDLIGLIRDFDL---LKVLV  278 (282)
T ss_dssp             TEEEEEEEHHHH---GGGGC
T ss_pred             CCEEEEEeHHHH---HHHHH
Confidence            699999999999   55443

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.29  E-value=6.1e-12  Score=107.08  Aligned_cols=119  Identities=18%  Similarity=0.243  Sum_probs=90.6

Q ss_pred             cceEeccccc---------CCCCccccccc---cccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehH
Q 028824           68 SGTLTANSAA---------PSSGVYTVGDF---MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY  135 (203)
Q Consensus        68 ~g~~~~~~l~---------~~~~~~~V~di---M~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~  135 (203)
                      .|.++.+++.         ......+++++   |++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+
T Consensus       163 ~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~  240 (323)
T 3t4n_C          163 VSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAY  240 (323)
T ss_dssp             EEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETT
T ss_pred             EEEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHH
Confidence            7888877763         22345689999   887  899999999999999999999999999999999999999999


Q ss_pred             HHhhchhh----cCCCccccCccC------Ccc---------chHHHH-----hhhceee-CCcEEEEEehhhHHHHH
Q 028824          136 DLLALDSI----SGSGRADNSMFP------EVD---------STWKVC-----EKCLSFE-NYICLGSLSLKFLTFLL  188 (203)
Q Consensus       136 Dll~~~~~----~~~~~v~~~m~~------~v~---------~~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~L  188 (203)
                      |++++...    .....+.++|.+      ++.         ...+.+     ..+++.+ +|+++|+||..|++..+
T Consensus       241 dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l  318 (323)
T 3t4n_C          241 DVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  318 (323)
T ss_dssp             HHHHHHHTTHHHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHHHHHhhchhhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence            99976432    123456677765      332         122222     3355554 79999999999995544

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.21  E-value=7.4e-11  Score=107.32  Aligned_cols=107  Identities=23%  Similarity=0.193  Sum_probs=85.3

Q ss_pred             CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHC-----CCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCc
Q 028824           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  153 (203)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~-----~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m  153 (203)
                      .+.+.+++++|++  +++++++++++.++++.|.++     +++.+||+|++|+++|+||.+|++..   .....+.++|
T Consensus       151 ~~~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~---~~~~~v~dim  225 (473)
T 2zy9_A          151 RYEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---DPRTRVAEIM  225 (473)
T ss_dssp             TSCTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS---CTTSBGGGTS
T ss_pred             cCCCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC---CCCCcHHHHh
Confidence            4467899999998  999999999999999999986     58999999988999999999999864   2455788888


Q ss_pred             cCCccc---------hHHHH-----hhhce-eeCCcEEEEEehhhHHHHHHH
Q 028824          154 FPEVDS---------TWKVC-----EKCLS-FENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       154 ~~~v~~---------~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~a  190 (203)
                      .+++..         ..+.+     ..++| +++|+++|+||.+|+++.+..
T Consensus       226 ~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          226 NPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             BSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence            765421         22222     23454 457999999999999877654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.21  E-value=6.6e-11  Score=98.35  Aligned_cols=116  Identities=15%  Similarity=0.106  Sum_probs=84.6

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh-chhh---
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSI---  143 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~-~~~~---  143 (203)
                      .|.++.+++...+...+++++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++ ....   
T Consensus        45 ~Giv~~~dl~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~  122 (282)
T 2yzq_A           45 VGIISVKRILVNPDEEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEK  122 (282)
T ss_dssp             EEEEESSCC----------CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSG
T ss_pred             EEEEEHHHHHhhhccCCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCC
Confidence            789999988776778899999998  8999999999999999999999999999998899999999999997 5432   


Q ss_pred             cCCCccccCccCCccc---------hHHHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824          144 SGSGRADNSMFPEVDS---------TWKVC-----EKCLSF-ENYICLGSLSLKFLT  185 (203)
Q Consensus       144 ~~~~~v~~~m~~~v~~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~  185 (203)
                      .....+.++|..++..         ..+.+     ..+++. ++|+++|+|+..|++
T Consensus       123 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          123 YKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL  179 (282)
T ss_dssp             GGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG
T ss_pred             cccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHh
Confidence            1234567778654421         12222     235554 478999999999996

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.20  E-value=5e-12  Score=118.74  Aligned_cols=61  Identities=23%  Similarity=0.199  Sum_probs=55.9

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHH-HCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILV-EKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~-~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ..++|+|+|+++.++.+++++++++|+.+.|. +++++.+||+|++|+++|+||.+|+++..
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l  512 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRL  512 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTT
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHH
Confidence            67899999994338999999999999999999 79999999999999999999999999764

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.17  E-value=3e-11  Score=100.01  Aligned_cols=116  Identities=16%  Similarity=0.237  Sum_probs=86.4

Q ss_pred             cceEecccccC-----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAAP-----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~~-----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .|.++.+++..     .....+++++|++  ++.++++++++.++++.|.+++++.+||+ ++|+++|+||.+|+++...
T Consensus       128 ~Givt~~dl~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          128 ISLITERDVIRALLDKIDENEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             EEEEEHHHHHHHHGGGSCTTCBSGGGCBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHT
T ss_pred             EEEEEHHHHHHHHhhcCCCCCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHh
Confidence            78888877622     1234589999998  89999999999999999999999999999 5799999999999997642


Q ss_pred             hc--------------CCCccccCccCCcc---------chHHHH-----hhhceee-CCcEEEEEehhhHHH
Q 028824          143 IS--------------GSGRADNSMFPEVD---------STWKVC-----EKCLSFE-NYICLGSLSLKFLTF  186 (203)
Q Consensus       143 ~~--------------~~~~v~~~m~~~v~---------~~~~~~-----~~llv~~-~g~lvGiVt~~DI~~  186 (203)
                      ..              ....+.++|.+++.         ...+.+     ..+++.+ +|+++|+||.+|++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~  277 (280)
T 3kh5_A          205 SDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLK  277 (280)
T ss_dssp             SHHHHHHHHSCCTHHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGG
T ss_pred             hhhhhhhhcccchhhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHH
Confidence            11              12356666655432         122222     3355554 569999999999943

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.15  E-value=1.5e-10  Score=78.95  Aligned_cols=63  Identities=24%  Similarity=0.334  Sum_probs=52.6

Q ss_pred             eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC----CCccccCccCCcc
Q 028824           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----SGRADNSMFPEVD  158 (203)
Q Consensus        95 ~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~----~~~v~~~m~~~v~  158 (203)
                      ++++.+++++.||+++|.+++++++||+| +|+++||||.+||++.....+    ..+++++|.+++.
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~i   68 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPV   68 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCe
Confidence            68999999999999999999999999998 589999999999986433222    3368888887654

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.12  E-value=8.9e-11  Score=100.31  Aligned_cols=120  Identities=17%  Similarity=0.185  Sum_probs=88.0

Q ss_pred             cceEecccccCC---------CCcccccc---ccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehH
Q 028824           68 SGTLTANSAAPS---------SGVYTVGD---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY  135 (203)
Q Consensus        68 ~g~~~~~~l~~~---------~~~~~V~d---iM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~  135 (203)
                      .|.++.+++...         ....++++   +|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+
T Consensus       158 ~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~  235 (334)
T 2qrd_G          158 VSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESV  235 (334)
T ss_dssp             EEEEEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETH
T ss_pred             EEEeeHHHHHHHHHhhccchhhhhCcHHHhCCcccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHH
Confidence            688887776321         12467888   4887  899999999999999999999999999999889999999999


Q ss_pred             HHhhchhhc----CCCccccCccC------Ccc---------chHHHH-----hhhceee-CCcEEEEEehhhHHHHHH
Q 028824          136 DLLALDSIS----GSGRADNSMFP------EVD---------STWKVC-----EKCLSFE-NYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       136 Dll~~~~~~----~~~~v~~~m~~------~v~---------~~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~L~  189 (203)
                      |++++....    ....+.++|..      ++.         ...+.+     ..+++.+ +|+++|+||..|++..+.
T Consensus       236 dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~  314 (334)
T 2qrd_G          236 DVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII  314 (334)
T ss_dssp             HHHHHHTTSCGGGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             HHHHHhhccccccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHH
Confidence            999764321    12345566653      221         122222     3355554 799999999999955443

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.03  E-value=7.5e-10  Score=94.49  Aligned_cols=111  Identities=16%  Similarity=0.137  Sum_probs=80.4

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhc---CC--------C
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS---GS--------G  147 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~---~~--------~  147 (203)
                      +...+|+|+|+++.+++++++++++.+|++.|.+++++++||+|++ ++++|+||.+|++......   ..        .
T Consensus        32 l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~  111 (330)
T 2v8q_E           32 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEH  111 (330)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGC
T ss_pred             HHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhc
Confidence            4667999999443389999999999999999999999999999987 7999999999998653210   00        0


Q ss_pred             c-------cccCccCCcc---------chHHHH-----hhhceee--CCcEEEEEehhhHHHHHHH
Q 028824          148 R-------ADNSMFPEVD---------STWKVC-----EKCLSFE--NYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       148 ~-------v~~~m~~~v~---------~~~~~~-----~~llv~~--~g~lvGiVt~~DI~~~L~a  190 (203)
                      .       +.++|.+++.         ...+.+     ..+++.+  +|+++|+||.+|++..+..
T Consensus       112 ~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~  177 (330)
T 2v8q_E          112 KIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  177 (330)
T ss_dssp             BHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             cHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHH
Confidence            0       1234444332         122222     3355554  7999999999999766543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.01  E-value=8.1e-10  Score=81.82  Aligned_cols=71  Identities=27%  Similarity=0.302  Sum_probs=62.8

Q ss_pred             cceEeccccc----CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAA----PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~----~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++.    ......+++++|.+   +.++.+++++.+|++.|.+++++.+||+|++|+++|+||..||++..
T Consensus        50 vGivt~~dl~~~~~~~~~~~~v~~~m~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           50 EGILMAKDLLPFMRSDAEAFSMDKVLRT---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             EEEEEGGGGGGGGSTTCCCCCHHHHCBC---CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             EEEEEHHHHHHHHhccCCCCCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            7999988885    33457789999954   77999999999999999999999999999999999999999999753

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.01  E-value=6.8e-10  Score=101.99  Aligned_cols=102  Identities=22%  Similarity=0.304  Sum_probs=78.0

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC--CCeEEEEEehHHHhhchhhcCCCccccCccC-Ccc---
Q 028824           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFP-EVD---  158 (203)
Q Consensus        85 V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~--~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~-~v~---  158 (203)
                      .+++|.+  +++++.+++++.+++++|.+++++++||+|+  +|+++|+||.+||+..  ......+.++|.+ ++.   
T Consensus       115 ~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~--~~~~~~V~~vM~~~~~vtv~  190 (511)
T 3usb_A          115 SESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI--QDYSIKISDVMTKEQLITAP  190 (511)
T ss_dssp             SSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC--CCSSSBHHHHCCCCCCCCEE
T ss_pred             ccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh--ccCCCcHHHhcccCCCEEEC
Confidence            4555666  8899999999999999999999999999998  8999999999999752  2334567778875 332   


Q ss_pred             ------chHHHH-----hhhc-eeeCCcEEEEEehhhHHHHHHH
Q 028824          159 ------STWKVC-----EKCL-SFENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       159 ------~~~~~~-----~~ll-v~~~g~lvGiVt~~DI~~~L~a  190 (203)
                            ...+.+     ..++ ++++|+++|+||.+|+++.+..
T Consensus       191 ~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          191 VGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             TTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence                  122222     2344 4568999999999999666654

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.00  E-value=7.3e-10  Score=89.89  Aligned_cols=72  Identities=24%  Similarity=0.239  Sum_probs=66.8

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      -|.++.+++.......+++++|++  +++++++++++.++++.|.++++..+||+|++|+++|+||..|++...
T Consensus       101 vGivt~~dll~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i  172 (205)
T 3kxr_A          101 LGTVRRYDIFKHEPHEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALV  172 (205)
T ss_dssp             EEEEEHHHHTTSCTTSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             EEEEEHHHHHhCCCcchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            799999998666678899999998  899999999999999999999999999999999999999999999764

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.00  E-value=1.1e-09  Score=82.33  Aligned_cols=71  Identities=21%  Similarity=0.183  Sum_probs=63.3

Q ss_pred             cceEecccccC-----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAP-----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~-----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++..     .....+++++|.+   +.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||++..
T Consensus        50 vGivt~~dl~~~~~~~~~~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l  125 (136)
T 3lfr_A           50 LGVLLAKDLLPLILKADGDSDDVKKLLRP---ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQI  125 (136)
T ss_dssp             EEEEEGGGGGGGGGSSSGGGCCGGGTCBC---CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC
T ss_pred             EEEEEHHHHHHHHHhccCCCcCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            79999888853     3456789999965   88999999999999999999999999999999999999999999754

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.99  E-value=1.3e-09  Score=81.10  Aligned_cols=71  Identities=18%  Similarity=0.147  Sum_probs=62.0

Q ss_pred             cceEecccccCC--CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPS--SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~--~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++...  ....+++++|.+   +.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++..
T Consensus        52 ~Givt~~dl~~~~~~~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l  124 (129)
T 3jtf_A           52 IGILLAKDLLRYMLEPALDIRSLVRP---AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQI  124 (129)
T ss_dssp             EEEEEGGGGGGGGTCTTSCGGGGCBC---CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHH
T ss_pred             EEEEEHHHHHhHhccCCcCHHHHhCC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            799999988433  356789999964   78999999999999999999999999999889999999999999754

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.98  E-value=7.1e-10  Score=86.39  Aligned_cols=57  Identities=28%  Similarity=0.367  Sum_probs=53.6

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ..+++++|++  +++++.+++++.+|+++|.+++++++||+| +|+++|+||..||+++.
T Consensus       104 ~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l  160 (170)
T 4esy_A          104 KLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLL  160 (170)
T ss_dssp             TCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTS
T ss_pred             ccchhhhccc--CcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            5689999999  899999999999999999999999999998 69999999999999864

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.97  E-value=1.3e-09  Score=88.48  Aligned_cols=73  Identities=21%  Similarity=0.217  Sum_probs=67.3

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .|.++.+++.......+++++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++...
T Consensus        57 ~Givt~~dl~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~  129 (213)
T 1vr9_A           57 RGVVNKEDLLDLDLDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI  129 (213)
T ss_dssp             EEEEEGGGGTTSCTTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHhhcCCCcHHHHccC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            799999999776677889999998  8999999999999999999999999999998899999999999997643

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.97  E-value=1.7e-09  Score=92.19  Aligned_cols=119  Identities=20%  Similarity=0.252  Sum_probs=83.0

Q ss_pred             cceEecccccCCC------------Cccccccc--cc-cCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEE
Q 028824           68 SGTLTANSAAPSS------------GVYTVGDF--MT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV  132 (203)
Q Consensus        68 ~g~~~~~~l~~~~------------~~~~V~di--M~-~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiV  132 (203)
                      .|.++.+++....            ...+++++  |+ +  ++.++.+++++.++++.|.+++++.+||+|++|+++|+|
T Consensus       163 ~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Gii  240 (330)
T 2v8q_E          163 LYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY  240 (330)
T ss_dssp             EEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCS--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEE
T ss_pred             EEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcC--CceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEE
Confidence            6788776662211            12344554  54 4  789999999999999999999999999999889999999


Q ss_pred             ehHHHhhchhhcC----CCccccCcc------CCcc---------chHHHH-----hhhceee-CCcEEEEEehhhHHHH
Q 028824          133 SDYDLLALDSISG----SGRADNSMF------PEVD---------STWKVC-----EKCLSFE-NYICLGSLSLKFLTFL  187 (203)
Q Consensus       133 t~~Dll~~~~~~~----~~~v~~~m~------~~v~---------~~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~  187 (203)
                      |.+|+++......    ...+.++|.      .++.         ...+.+     ..+++.+ +|+++|+|+..|++..
T Consensus       241 t~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~  320 (330)
T 2v8q_E          241 SKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQA  320 (330)
T ss_dssp             EGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             EHHHHHHHHhccccccccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHH
Confidence            9999997654321    234555552      3221         122222     3455554 6999999999999443


Q ss_pred             H
Q 028824          188 L  188 (203)
Q Consensus       188 L  188 (203)
                      +
T Consensus       321 ~  321 (330)
T 2v8q_E          321 L  321 (330)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.95  E-value=4.2e-10  Score=103.02  Aligned_cols=100  Identities=21%  Similarity=0.309  Sum_probs=72.7

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccC-C-cc---
Q 028824           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP-E-VD---  158 (203)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~-~-v~---  158 (203)
                      +++++|+.  +++++++++++.+++++|.+++++.+||+|++++++|+||.+||+..  ......+.++|.+ + +.   
T Consensus        90 ~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~--~~~~~~v~diM~p~~~~vtv~  165 (496)
T 4fxs_A           90 IFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV--TDLTKSVAAVMTPKERLATVK  165 (496)
T ss_dssp             HCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC--CCTTSBGGGTSEEGGGCCEEE
T ss_pred             cccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc--ccCCCcHHHHhcCCCCCEEEC
Confidence            55778998  99999999999999999999999999999988999999999999742  2344567888882 1 21   


Q ss_pred             ------chHHH-----Hhhhc-eeeCCcEEEEEehhhHHHH
Q 028824          159 ------STWKV-----CEKCL-SFENYICLGSLSLKFLTFL  187 (203)
Q Consensus       159 ------~~~~~-----~~~ll-v~~~g~lvGiVt~~DI~~~  187 (203)
                            ...+.     ...++ ++++|+++|+||.+|+++.
T Consensus       166 ~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          166 EGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKA  206 (496)
T ss_dssp             CC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHh
Confidence                  11111     13344 4568999999999999443

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.94  E-value=7e-10  Score=82.14  Aligned_cols=72  Identities=15%  Similarity=0.230  Sum_probs=63.2

Q ss_pred             cceEecccccCCCC-----ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPSSG-----VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~~~-----~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++.....     ..+++++|.+  ++.++.+++++.++++.|.++++..+||+|++|+++|+||..|++++.
T Consensus        48 ~Givt~~dl~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (128)
T 3gby_A           48 LGMVHLSRLLEGRKGWPTVKEKLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL  124 (128)
T ss_dssp             EEEEEHHHHHTTCSSSCCTTCBCCGGGCB--CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             EEEEEHHHHHHHHhhCCcccCcHHHHccC--CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence            78999888743221     2569999998  899999999999999999999999999999999999999999999764

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.94  E-value=1e-09  Score=82.69  Aligned_cols=73  Identities=29%  Similarity=0.446  Sum_probs=63.4

Q ss_pred             cceEecccccC-------------------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeE
Q 028824           68 SGTLTANSAAP-------------------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (203)
Q Consensus        68 ~g~~~~~~l~~-------------------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~l  128 (203)
                      .|.++.+++..                   .....+++++|.+  ++.++.+++++.+|++.|.+++++.+||+|++|++
T Consensus        51 ~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~  128 (152)
T 4gqw_A           51 VGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKL  128 (152)
T ss_dssp             EEEEEHHHHTTCC----CCHHHHHHHTC-----CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBE
T ss_pred             EEEEEHHHHHHhhcccCcccchHHHHHHHHHhccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcE
Confidence            78888888742                   2345789999998  89999999999999999999999999999989999


Q ss_pred             EEEEehHHHhhchh
Q 028824          129 VGLVSDYDLLALDS  142 (203)
Q Consensus       129 vGiVt~~Dll~~~~  142 (203)
                      +|+||.+||++...
T Consensus       129 ~Giit~~dil~~~~  142 (152)
T 4gqw_A          129 VGIITRGNVVRAAL  142 (152)
T ss_dssp             EEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHH
Confidence            99999999998643

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.93  E-value=3.3e-09  Score=96.44  Aligned_cols=102  Identities=19%  Similarity=0.277  Sum_probs=80.8

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEe--CCCeEEEEEehHHHhhchhhcCCCccccCccC-Ccc--
Q 028824           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFP-EVD--  158 (203)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd--~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~-~v~--  158 (203)
                      .++++|++  ++.++.+++++.++++.|.+++++.+||+|  ++++++|+||.+|++...  .....+.++|.+ ++.  
T Consensus        91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~--~~~~~v~~im~~~~~~~v  166 (491)
T 1zfj_A           91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS--DYNAPISEHMTSEHLVTA  166 (491)
T ss_dssp             HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--CSSSBTTTSCCCSCCCCE
T ss_pred             hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc--cCCCcHHHHcCCCCCEEE
Confidence            46889998  899999999999999999999999999999  789999999999998642  245578888885 332  


Q ss_pred             -------chHHHH-----hhhce-eeCCcEEEEEehhhHHHHHH
Q 028824          159 -------STWKVC-----EKCLS-FENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       159 -------~~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~  189 (203)
                             ...+.+     ..+++ +++|+++|+||.+|++..+.
T Consensus       167 ~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          167 AVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             ETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence                   122222     23444 45899999999999966655

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.92  E-value=1.1e-09  Score=85.65  Aligned_cols=72  Identities=21%  Similarity=0.182  Sum_probs=63.4

Q ss_pred             cceEecccccCCC---CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAAPSS---GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~~~~---~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .|.++.+++....   ...+++++| +  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..||++...
T Consensus        89 vGivt~~dl~~~~~~~~~~~v~~im-~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~  163 (172)
T 3lhh_A           89 VGIISAKQLLSESIAGERLELVDLV-K--NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALT  163 (172)
T ss_dssp             EEEEEHHHHHHHHHTTCCCCGGGGC-B--CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHhhcCcccHHHHh-c--CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHh
Confidence            7999988873322   367899999 6  7999999999999999999999999999998899999999999997643

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.92  E-value=1.3e-09  Score=84.68  Aligned_cols=59  Identities=31%  Similarity=0.513  Sum_probs=55.3

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ...+++++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||+++.
T Consensus        96 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           96 YGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAA  154 (180)
T ss_dssp             TTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             ccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHH
Confidence            46789999998  899999999999999999999999999999899999999999999764

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.91  E-value=1.9e-09  Score=80.96  Aligned_cols=71  Identities=17%  Similarity=0.139  Sum_probs=62.7

Q ss_pred             cceEecccccCC-----CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPS-----SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~-----~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++...     ....+++++|.+  ++.++.++ ++.+|++.|.+++++.+||+|++|+++|+||..||+++.
T Consensus        51 ~Givt~~dl~~~~~~~~~~~~~v~~~m~~--~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           51 VAVVSERDILRAVAQRLDLDGPAMPIANS--PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             EEEEEHHHHHHHHHTTCCTTSBSGGGCBC--CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             EEEEEHHHHHHHHhcCCCCCCCHHHHcCC--CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence            788988887321     246789999998  89999999 999999999999999999999889999999999999753

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.90  E-value=4.9e-09  Score=88.98  Aligned_cols=102  Identities=16%  Similarity=0.136  Sum_probs=73.0

Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCe-----EEEEEehHHHhhchhh------cCCCccccC--
Q 028824           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK-----LVGLVSDYDLLALDSI------SGSGRADNS--  152 (203)
Q Consensus        86 ~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~-----lvGiVt~~Dll~~~~~------~~~~~v~~~--  152 (203)
                      .++|.+  +++++.+++++.+|++.|.+++++.+||+|++++     ++|+||.+|+++....      .....+.++  
T Consensus       117 ~~~~~~--~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~  194 (323)
T 3t4n_C          117 LGVDQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNI  194 (323)
T ss_dssp             TTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTC
T ss_pred             hCCCCC--CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCC
Confidence            345566  7999999999999999999999999999998775     9999999999976321      223356677  


Q ss_pred             -ccCCccc---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHHH
Q 028824          153 -MFPEVDS---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       153 -m~~~v~~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~  189 (203)
                       |..++..         ..+.+     ..+++. ++|+++|+|+..|++..+.
T Consensus       195 ~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  247 (323)
T 3t4n_C          195 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIK  247 (323)
T ss_dssp             SBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHH
T ss_pred             CCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHh
Confidence             6544321         12222     335554 5789999999999966554

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.89  E-value=1.5e-09  Score=79.14  Aligned_cols=72  Identities=26%  Similarity=0.383  Sum_probs=62.8

Q ss_pred             cceEecccccCC--CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPS--SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~--~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++...  ....+++++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+||+++.
T Consensus        45 ~G~vt~~dl~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           45 VGIITSWDIAKALAQNKKTIEEIMTR--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLF  118 (122)
T ss_dssp             EEEECHHHHHHHHHTTCCBGGGTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             EEEEEHHHHHHHHHhcccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHh
Confidence            788888877321  233489999998  899999999999999999999999999999889999999999999754

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.89  E-value=1.8e-09  Score=80.34  Aligned_cols=71  Identities=28%  Similarity=0.402  Sum_probs=63.2

Q ss_pred             cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      .|.++.+++..       .....+++++|.+  ++.++++++++.++++.|.+++++.+||+| +|+++|+||.+|++++
T Consensus        52 ~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~  128 (135)
T 2rc3_A           52 VGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKD  128 (135)
T ss_dssp             EEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             EEEEehHHHHHHHHHcCCCcccCCHHHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHH
Confidence            68888887742       2457899999998  899999999999999999999999999999 7999999999999976


Q ss_pred             h
Q 028824          141 D  141 (203)
Q Consensus       141 ~  141 (203)
                      .
T Consensus       129 ~  129 (135)
T 2rc3_A          129 A  129 (135)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.89  E-value=1.7e-09  Score=80.40  Aligned_cols=71  Identities=21%  Similarity=0.270  Sum_probs=61.8

Q ss_pred             cceEecccccC----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAP----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++..    .....+++++|.   ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++..
T Consensus        53 ~Givt~~dl~~~~~~~~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l  127 (130)
T 3i8n_A           53 IGFVHRLELFKMQQSGSGQKQLGAVMR---PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL  127 (130)
T ss_dssp             EEECCHHHHHHHHHTTTTTSBHHHHSE---ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             EEEEEHHHHHHHHhcCCCcCCHHHHhc---CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            78888887732    234678999995   488999999999999999999999999999999999999999999754

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.88  E-value=1.6e-09  Score=82.13  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             cceEecccccCC---CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPS---SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~---~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++...   ....+++++| +  ++.++++++++.+|++.|.+++++.+||+|++|+++|+||..||++..
T Consensus        70 vGivt~~dl~~~~~~~~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l  143 (148)
T 3lv9_A           70 LGFVHIRDLYNQKINENKIELEEIL-R--DIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEI  143 (148)
T ss_dssp             EEEEEHHHHHHHHHHHSCCCGGGTC-B--CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHH
T ss_pred             EEEEEHHHHHHHHhcCCCccHHHhc-C--CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            799998887332   1167899999 6  799999999999999999999999999999989999999999999754

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.88  E-value=6.3e-09  Score=88.73  Aligned_cols=62  Identities=26%  Similarity=0.271  Sum_probs=55.8

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhch
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALD  141 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~  141 (203)
                      +...+|+|+|+++.+++++++++++.+|++.|.+++++++||+|++ |+++|+|+.+|++...
T Consensus        19 l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~   81 (334)
T 2qrd_G           19 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVI   81 (334)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHH
T ss_pred             HhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHH
Confidence            4568999999875568899999999999999999999999999976 8999999999999753

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.88  E-value=1.8e-09  Score=82.59  Aligned_cols=72  Identities=17%  Similarity=0.171  Sum_probs=63.3

Q ss_pred             cceEecccccCC---CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAAPS---SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~~~---~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .|.++.+++...   ....+++++| +  ++.++.+++++.+|++.|.++++..+||+|++|+++|+||..||++...
T Consensus        68 vGivt~~dl~~~~~~~~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~  142 (153)
T 3oco_A           68 IGYAYNYDIVRQARIDDKAKISTIM-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELF  142 (153)
T ss_dssp             EEEEEHHHHHHHHHHHTTSBGGGTC-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHH
T ss_pred             EEEEEHHHHHhHHhcCCCCcHHHHh-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHh
Confidence            789998887322   2367899999 6  7999999999999999999999999999999999999999999997643

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.87  E-value=1e-09  Score=85.09  Aligned_cols=85  Identities=21%  Similarity=0.313  Sum_probs=67.8

Q ss_pred             ccccccccccccCCccccccceEecccccC----------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcE
Q 028824           49 LATSSDRVSALRRSSAVFASGTLTANSAAP----------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG  118 (203)
Q Consensus        49 ~~~~~~~~~~~r~~~~~~~~g~~~~~~l~~----------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~  118 (203)
                      .++++.||...   .... .|.++.+++..          .....+|+++|++  ++.++++++++.+|++.|.++++  
T Consensus        46 ~~~s~~pVvd~---~~~l-vGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~--  117 (156)
T 3k6e_A           46 MTYTRVPVVTD---EKQF-VGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKT--DVAVVSPDFTITEVLHKLVDESF--  117 (156)
T ss_dssp             SSSSEEEEECC----CBE-EEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBC--SCCCBCTTCCHHHHHHHTTTSSE--
T ss_pred             cCCcEEEEEcC---CCcE-EEEEEecchhhhhhhcccccccccccCHHHhhcC--CceecccccHHHHHHHHHHHcCC--
Confidence            34566677642   2234 78888777521          2356789999998  89999999999999999998765  


Q ss_pred             EEEEeCCCeEEEEEehHHHhhch
Q 028824          119 FPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus       119 lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      +||+|++|+++|+||.+||+++.
T Consensus       118 lpVVd~~g~l~GiiT~~Dil~~~  140 (156)
T 3k6e_A          118 LPVVDAEGIFQGIITRKSILKAV  140 (156)
T ss_dssp             EEEECTTSBEEEEEEHHHHHHHH
T ss_pred             eEEEecCCEEEEEEEHHHHHHHH
Confidence            99999999999999999999864

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.87  E-value=3.4e-09  Score=81.49  Aligned_cols=68  Identities=21%  Similarity=0.182  Sum_probs=60.9

Q ss_pred             cceEecccccCCC---CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHh
Q 028824           68 SGTLTANSAAPSS---GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (203)
Q Consensus        68 ~g~~~~~~l~~~~---~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll  138 (203)
                      .|.++.+++....   ...+++++|.+   +.++++++++.+|++.|.+++++.+||+|++|+++|+||..||+
T Consensus        85 vGivt~~dl~~~~~~~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A           85 LGILHAKDLLKYMFNPEQFHLKSILRP---AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             EEEEEGGGGGGGSSCGGGCCHHHHCBC---CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             EEEEEHHHHHHHHHcCCcccHHHHcCC---CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            7999999884432   46789999965   88999999999999999999999999999999999999999986

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.87  E-value=2.4e-09  Score=81.04  Aligned_cols=71  Identities=17%  Similarity=0.290  Sum_probs=62.0

Q ss_pred             cceEecccccC-----------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHH
Q 028824           68 SGTLTANSAAP-----------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD  136 (203)
Q Consensus        68 ~g~~~~~~l~~-----------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~D  136 (203)
                      .|.++.+++..           .....+++++|.+  ++.++.+++++.+|++.|.++++  +||+|++|+++|+||..|
T Consensus        61 ~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~d  136 (150)
T 3lqn_A           61 HGLISTAMILDGILGLERIEFERLEEMKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRA  136 (150)
T ss_dssp             EEEEEHHHHHHHTBCSSSBCGGGGGGCBGGGTCBS--SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHH
T ss_pred             EEEEEHHHHHHHHHhhcccchhHHhcCCHHHHhcC--CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHH
Confidence            78898888732           2356789999998  89999999999999999999987  999998999999999999


Q ss_pred             Hhhchh
Q 028824          137 LLALDS  142 (203)
Q Consensus       137 ll~~~~  142 (203)
                      |+++..
T Consensus       137 il~~l~  142 (150)
T 3lqn_A          137 ILKLLN  142 (150)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            997643

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.86  E-value=4.1e-09  Score=78.11  Aligned_cols=73  Identities=25%  Similarity=0.357  Sum_probs=63.9

Q ss_pred             cceEecccccC-----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAAP-----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~~-----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .|.++.+++..     .....+++++|.+  ++.++++++++.++++.|.+++++.+||+|++|+++|+||..|+++...
T Consensus        47 ~Givt~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           47 VGIITERDIVKAIGKGKSLETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             EEEEEHHHHHHHHHTTCCTTCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             EEEEcHHHHHHHHhcCCCcccCHHHHcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            78898888732     1345789999998  8999999999999999999999999999998899999999999997643

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.86  E-value=2.8e-09  Score=79.49  Aligned_cols=71  Identities=18%  Similarity=0.049  Sum_probs=61.1

Q ss_pred             cceEecccccCC------CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPS------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~------~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++...      +...+++++| +  ++.++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++..
T Consensus        49 vGivt~~dl~~~~~~~~~~~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l  125 (130)
T 3hf7_A           49 ISMLRVREAYRLMTEKKEFTKEIMLRAA-D--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI  125 (130)
T ss_dssp             EEEEEHHHHHHHHTSSSCCCHHHHHHHS-B--CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             EEEEEHHHHHHHHhccCccchhhHHHhc-c--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHH
Confidence            789998887321      2345789999 4  588999999999999999999999999999999999999999999754

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.85  E-value=2.8e-09  Score=82.46  Aligned_cols=72  Identities=24%  Similarity=0.289  Sum_probs=64.3

Q ss_pred             cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      .|.++.+++..       .....+++++|.+  ++.++.+++++.++++.|.+++++.+||+|+ |+++|+||..||+++
T Consensus        71 ~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~  147 (165)
T 3fhm_A           71 LGIFTERDLVKAVAGQGAASLQQSVSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKA  147 (165)
T ss_dssp             EEEEEHHHHHHHHHHHGGGGGTSBGGGTSBS--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHH
T ss_pred             EEEEEHHHHHHHHHhcCCccccCCHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            78999888743       3456899999998  8999999999999999999999999999998 999999999999976


Q ss_pred             hh
Q 028824          141 DS  142 (203)
Q Consensus       141 ~~  142 (203)
                      ..
T Consensus       148 ~~  149 (165)
T 3fhm_A          148 RI  149 (165)
T ss_dssp             TT
T ss_pred             HH
Confidence            43

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.84  E-value=3.4e-10  Score=103.17  Aligned_cols=102  Identities=24%  Similarity=0.349  Sum_probs=4.7

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccC--Cccc--
Q 028824           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP--EVDS--  159 (203)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~--~v~~--  159 (203)
                      +++++|++  +++++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++..  .....+.++|.+  ++..  
T Consensus        96 ~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~--~~~~~v~~im~~~~~~~~v~  171 (494)
T 1vrd_A           96 KTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK--NLSKKIKDLMTPREKLIVAP  171 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc--CCCCcHHHHhCCCCCCeEEC
Confidence            57889998  899999999999999999999999999999889999999999998632  234567788875  4321  


Q ss_pred             -------hHHHH-----hhhce-eeCCcEEEEEehhhHHHHHH
Q 028824          160 -------TWKVC-----EKCLS-FENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       160 -------~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~  189 (203)
                             ..+.+     ..++| +++|+++|+|+..|++..+.
T Consensus       172 ~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          172 PDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             -------------------------------------CHHHHT
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhc
Confidence                   11111     33444 46899999999999955543

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.84  E-value=4.2e-09  Score=78.05  Aligned_cols=71  Identities=24%  Similarity=0.450  Sum_probs=62.4

Q ss_pred             cceEeccccc-C------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAA-P------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~-~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      .|.++.+++. .      .....+++++|.+  ++.++++++++.++++.|.+++++.+||+|+ |+++|+||..||++.
T Consensus        52 ~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~  128 (133)
T 1y5h_A           52 HGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARH  128 (133)
T ss_dssp             EEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHT
T ss_pred             EEEEeHHHHHHHHHhcCCCccccCHHHHhcC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            7888888774 1      2245789999998  8999999999999999999999999999997 999999999999975


Q ss_pred             h
Q 028824          141 D  141 (203)
Q Consensus       141 ~  141 (203)
                      .
T Consensus       129 l  129 (133)
T 1y5h_A          129 L  129 (133)
T ss_dssp             C
T ss_pred             H
Confidence            3

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.83  E-value=3.2e-10  Score=103.91  Aligned_cols=105  Identities=17%  Similarity=0.041  Sum_probs=3.0

Q ss_pred             cccccc-cccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC---CeEEEEEehHHHhhchhhcCCCccccCccCC--
Q 028824           83 YTVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPE--  156 (203)
Q Consensus        83 ~~V~di-M~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~---g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~--  156 (203)
                      ++..++ |++  +++++++++++.++++.|.+++++.+||+|++   |+++|+||.+||+.. .......+.++|.+.  
T Consensus        96 V~~~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~~~~~~~V~diM~~~~~  172 (503)
T 1me8_A           96 VKNFKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-LTQTETKVSDMMTPFSK  172 (503)
T ss_dssp             HHTTTC--------------------------------------------------------------------------
T ss_pred             hhhcccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-hccccCcHHHHhCCCCC
Confidence            444555 998  89999999999999999999999999999987   899999999999864 223345677888864  


Q ss_pred             ccc---------hHHHH-----hhhc-eeeCCcEEEEEehhhHHHHHHH
Q 028824          157 VDS---------TWKVC-----EKCL-SFENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       157 v~~---------~~~~~-----~~ll-v~~~g~lvGiVt~~DI~~~L~a  190 (203)
                      +..         ..+.+     ..++ ++++|+++|+||.+|++..+..
T Consensus       173 ~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~  221 (503)
T 1me8_A          173 LVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVC  221 (503)
T ss_dssp             -------------------------------------------------
T ss_pred             CEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhc
Confidence            321         11222     3344 4468999999999999655543

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.83  E-value=2.8e-09  Score=77.93  Aligned_cols=71  Identities=24%  Similarity=0.339  Sum_probs=62.6

Q ss_pred             cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      -|.++.+++..      .....+++++|.+  ++.++.+++++.++++.|.+++++.+||+|+ |+++|+||..|++++.
T Consensus        44 ~G~it~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l  120 (125)
T 1pbj_A           44 VGIVTTWDVLEAIAEGDDLAEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAK  120 (125)
T ss_dssp             EEEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHH
T ss_pred             EEEEeHHHHHHHHhcCCcccccCHHHHcCC--CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            68888887732      2357789999998  8999999999999999999999999999997 9999999999999754

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.82  E-value=4.2e-09  Score=80.98  Aligned_cols=75  Identities=23%  Similarity=0.295  Sum_probs=65.0

Q ss_pred             cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCC---eEEEEEehHHHh
Q 028824           68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLL  138 (203)
Q Consensus        68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g---~lvGiVt~~Dll  138 (203)
                      .|.++.+++..      .....+++++|.+..++.++.+++++.+|++.|.+++++.+||+|++|   +++|+||..||+
T Consensus        60 ~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil  139 (159)
T 3fv6_A           60 VGVLSRKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMT  139 (159)
T ss_dssp             EEEEEHHHHHHHHTSCSCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHH
T ss_pred             EEEEeHHHHHHHhhccCcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHH
Confidence            78999888733      346779999998644588999999999999999999999999999888   999999999999


Q ss_pred             hchh
Q 028824          139 ALDS  142 (203)
Q Consensus       139 ~~~~  142 (203)
                      ++..
T Consensus       140 ~~l~  143 (159)
T 3fv6_A          140 KILV  143 (159)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7643

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.82  E-value=4.6e-09  Score=78.17  Aligned_cols=72  Identities=28%  Similarity=0.401  Sum_probs=62.8

Q ss_pred             cceEecccc-cC-----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCC-----CcEEEEEeCCCeEEEEEehHH
Q 028824           68 SGTLTANSA-AP-----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYD  136 (203)
Q Consensus        68 ~g~~~~~~l-~~-----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~-----~~~lPVvd~~g~lvGiVt~~D  136 (203)
                      .|.++.+++ ..     .....+++++|.+  ++.++.+++++.++++.|.+++     ++.+||+|++|+++|+||..|
T Consensus        52 ~Givt~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~d  129 (138)
T 2p9m_A           52 IGIVTTTDIGYNLIRDKYTLETTIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGD  129 (138)
T ss_dssp             EEEEEHHHHHHHHTTTCCCSSCBHHHHSCS--SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHH
T ss_pred             EEEEEHHHHHHHHHhhcccCCcCHHHHhCC--CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHH
Confidence            788888877 32     3456789999998  8999999999999999999999     999999998899999999999


Q ss_pred             Hhhch
Q 028824          137 LLALD  141 (203)
Q Consensus       137 ll~~~  141 (203)
                      +++..
T Consensus       130 ll~~~  134 (138)
T 2p9m_A          130 IIRTI  134 (138)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99754

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.82  E-value=4.3e-09  Score=80.39  Aligned_cols=72  Identities=32%  Similarity=0.498  Sum_probs=63.8

Q ss_pred             cceEecccccCC-------CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAAPS-------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~~~-------~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      -|.++.+++...       ....+++++|.+  ++.++.+++++.++++.|.+++++.+||+| +|+++|+||..||+++
T Consensus        56 ~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~  132 (157)
T 4fry_A           56 AGIVTERDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKS  132 (157)
T ss_dssp             EEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             EEEEEHHHHHHHHHhccCCccccCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHH
Confidence            788988887321       357889999998  899999999999999999999999999999 7999999999999987


Q ss_pred             hh
Q 028824          141 DS  142 (203)
Q Consensus       141 ~~  142 (203)
                      ..
T Consensus       133 l~  134 (157)
T 4fry_A          133 VI  134 (157)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.81  E-value=5e-09  Score=79.57  Aligned_cols=69  Identities=29%  Similarity=0.360  Sum_probs=61.1

Q ss_pred             cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824           68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (203)
Q Consensus        68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~  139 (203)
                      .|.++.+++..      .....+++++|.+  ++.++.+++++.++++.|.+++++.+||+|++ +++|+||..||++
T Consensus        74 ~Givt~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           74 IGIFTDGDLRRVFDTGVDMRDASIADVMTR--GGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             EEEEEHHHHHHHHCSSSCCTTCBHHHHSEE--SCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             EEEecHHHHHHHHhcCCCcccCcHHHHcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            78898888732      2256789999998  89999999999999999999999999999975 9999999999985

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.80  E-value=6.2e-09  Score=82.00  Aligned_cols=72  Identities=24%  Similarity=0.264  Sum_probs=63.8

Q ss_pred             cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      .|.++.+++..       .....+++++|.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..||+++
T Consensus        53 vGivt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~  130 (184)
T 1pvm_A           53 VGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY  130 (184)
T ss_dssp             EEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTT
T ss_pred             EEEEeHHHHHHHHhhcccCcccCCHHHHhCC--CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence            78888887732       2456789999998  89999999999999999999999999999988999999999999975


Q ss_pred             h
Q 028824          141 D  141 (203)
Q Consensus       141 ~  141 (203)
                      .
T Consensus       131 ~  131 (184)
T 1pvm_A          131 L  131 (184)
T ss_dssp             S
T ss_pred             H
Confidence            4

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.79  E-value=5.4e-10  Score=102.17  Aligned_cols=102  Identities=24%  Similarity=0.289  Sum_probs=3.4

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccC--Cccc-
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP--EVDS-  159 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~--~v~~-  159 (203)
                      .+++++|..  +++++++++++.+++++|.+++++.+||+| +|+++|+||.+||...  ......+.++|.+  ++.. 
T Consensus        88 k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~--~~~~~~V~~vMtp~~~~vtv  162 (490)
T 4avf_A           88 KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVK--PNAGDTVAAIMTPKDKLVTA  162 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhc--cccCCcHHHHhccCCCCEEE
Confidence            357889998  899999999999999999999999999999 8999999999999742  2234567888883  2221 


Q ss_pred             --------hHHHH-----hhhc-eeeCCcEEEEEehhhHHHHHH
Q 028824          160 --------TWKVC-----EKCL-SFENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       160 --------~~~~~-----~~ll-v~~~g~lvGiVt~~DI~~~L~  189 (203)
                              ..+.+     ..++ ++++|+++|+||.+|+++...
T Consensus       163 ~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          163 REGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             --------------------------------------------
T ss_pred             CCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence                    11112     3344 456899999999999955443

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.78  E-value=6.3e-09  Score=88.34  Aligned_cols=72  Identities=15%  Similarity=0.251  Sum_probs=66.8

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++.......+++++|.+  +++++++++++.++++.|.++++..+||+|++|+++|+||..|+++..
T Consensus       186 vGivt~~dll~~~~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i  257 (286)
T 2oux_A          186 VGVISLRDLIVNDDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI  257 (286)
T ss_dssp             EEEEEHHHHTTSCTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             EEEEEHHHHHcCCCCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            799999998766678899999998  899999999999999999999999999999999999999999999753

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.78  E-value=5.5e-09  Score=88.06  Aligned_cols=72  Identities=24%  Similarity=0.391  Sum_probs=65.7

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      -|.++.+++.......+++++|.+  +++++++++++.++++.|.++++..+||+|++|+++|+||..|+++..
T Consensus       184 vGivt~~dll~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i  255 (278)
T 2yvy_A          184 KGVLSLRDLIVADPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  255 (278)
T ss_dssp             EEEEEHHHHHHSCTTCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC
T ss_pred             EEEEEHHHHhcCCCCCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            799998888555567899999988  899999999999999999999999999999999999999999999753

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.76  E-value=1.1e-08  Score=78.89  Aligned_cols=71  Identities=20%  Similarity=0.327  Sum_probs=62.1

Q ss_pred             cceEecccccC--------------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEe
Q 028824           68 SGTLTANSAAP--------------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS  133 (203)
Q Consensus        68 ~g~~~~~~l~~--------------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt  133 (203)
                      .|.++.+++..              .....+++++|.+  ++.++.+++++.+|++.|.+++++.+||+|+ |+++|+||
T Consensus        49 vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit  125 (160)
T 2o16_A           49 LGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIIT  125 (160)
T ss_dssp             EEEEEHHHHHHHHHHHCC---------CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEEC
T ss_pred             EEEEeHHHHHHHHHHhhcccccccchhcccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEE
Confidence            78888887732              2356789999998  8999999999999999999999999999997 99999999


Q ss_pred             hHHHhhch
Q 028824          134 DYDLLALD  141 (203)
Q Consensus       134 ~~Dll~~~  141 (203)
                      ..||+++.
T Consensus       126 ~~dil~~~  133 (160)
T 2o16_A          126 DSDFVTIA  133 (160)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999753

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.75  E-value=4.7e-09  Score=86.29  Aligned_cols=58  Identities=28%  Similarity=0.471  Sum_probs=50.4

Q ss_pred             Cccccccccc-cCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           81 GVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        81 ~~~~V~diM~-~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      ...+++++|+ +  ++.++++++++.+|++.|.+++++.+||+|++|+++|+||.+|++++
T Consensus       183 ~~~~v~~im~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~  241 (245)
T 3l2b_A          183 QSLPVDYVMTKD--NLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST  241 (245)
T ss_dssp             GGSBHHHHSBCT--TCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-----
T ss_pred             cCCceeeEecCC--ccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhch
Confidence            4678999999 6  89999999999999999999999999999999999999999999865

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.75  E-value=1.7e-08  Score=75.10  Aligned_cols=72  Identities=26%  Similarity=0.333  Sum_probs=63.1

Q ss_pred             cceEeccccc-C-----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAA-P-----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~-~-----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++.+++. .     .....+++++|.+  ++.++.+++++.++++.|.+++++.+ |+|++|+++|+||..||++..
T Consensus        51 ~Givt~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~  127 (138)
T 2yzi_A           51 VGFFTKSDIIRRVIVPGLPYDIPVERIMTR--NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEAS  127 (138)
T ss_dssp             EEEEEHHHHHHHTTTTCCCTTSBGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHH
T ss_pred             EEEEeHHHHHHHHHhcCCcccCCHHHHhhC--CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHH
Confidence            7889888773 1     1346789999998  89999999999999999999999999 999889999999999999764


Q ss_pred             h
Q 028824          142 S  142 (203)
Q Consensus       142 ~  142 (203)
                      .
T Consensus       128 ~  128 (138)
T 2yzi_A          128 R  128 (138)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.75  E-value=9.4e-09  Score=78.71  Aligned_cols=72  Identities=19%  Similarity=0.299  Sum_probs=62.7

Q ss_pred             cceEecccccC---------------------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCC
Q 028824           68 SGTLTANSAAP---------------------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW  126 (203)
Q Consensus        68 ~g~~~~~~l~~---------------------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g  126 (203)
                      .|.++.+++..                     .....+++++|.+   +.++++++++.+|++.|.+++++.+||+|++|
T Consensus        60 vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g  136 (157)
T 1o50_A           60 VGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG  136 (157)
T ss_dssp             EEEEEHHHHHHHHHHHHHCCCC-------CCCCCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred             EEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCC
Confidence            78888877632                     3457789999986   88999999999999999999999999999889


Q ss_pred             eEEEEEehHHHhhchh
Q 028824          127 KLVGLVSDYDLLALDS  142 (203)
Q Consensus       127 ~lvGiVt~~Dll~~~~  142 (203)
                      +++|+||..||+++..
T Consensus       137 ~~vGiit~~dll~~l~  152 (157)
T 1o50_A          137 EIVGDLNSLEILLALW  152 (157)
T ss_dssp             CEEEEEEHHHHHHHHH
T ss_pred             EEEEEEEHHHHHHHHH
Confidence            9999999999997643

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.74  E-value=8.9e-09  Score=76.87  Aligned_cols=75  Identities=17%  Similarity=0.231  Sum_probs=61.5

Q ss_pred             cceEecccccCC-------CCccccccccccCC----CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHH
Q 028824           68 SGTLTANSAAPS-------SGVYTVGDFMTTKE----ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD  136 (203)
Q Consensus        68 ~g~~~~~~l~~~-------~~~~~V~diM~~~~----~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~D  136 (203)
                      .|.++.+++...       ....+++++|.+..    ++.++.+++++.++++.|.+++++.+||+|++|+++|+||..|
T Consensus        55 ~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~d  134 (144)
T 2nyc_A           55 INVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD  134 (144)
T ss_dssp             EEEEEHHHHHHHHHTC----CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             EEEEcHHHHHHHhcccccccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHH
Confidence            788888877321       23678999998521    4789999999999999999999999999998899999999999


Q ss_pred             Hhhchh
Q 028824          137 LLALDS  142 (203)
Q Consensus       137 ll~~~~  142 (203)
                      |++...
T Consensus       135 il~~l~  140 (144)
T 2nyc_A          135 ILKYIL  140 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            997643

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.74  E-value=1e-08  Score=78.04  Aligned_cols=71  Identities=14%  Similarity=0.235  Sum_probs=61.4

Q ss_pred             cceEecccccCC-----------CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHH
Q 028824           68 SGTLTANSAAPS-----------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD  136 (203)
Q Consensus        68 ~g~~~~~~l~~~-----------~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~D  136 (203)
                      .|.++..++...           ....+++++|.+  ++.++.+++++.++++.|.++++  +||+|++|+++|+||..|
T Consensus        57 ~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~d  132 (157)
T 2emq_A           57 HGLISMTMMMDAILGLERIEFERLETMKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRRE  132 (157)
T ss_dssp             EEEEEHHHHHHHSBCSSSBCGGGGGTCBGGGTCBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHH
T ss_pred             EEEeeHHHHHHHHhcccccchHHhcCCcHHHHhCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHH
Confidence            788888776221           246789999998  89999999999999999999987  999998899999999999


Q ss_pred             Hhhchh
Q 028824          137 LLALDS  142 (203)
Q Consensus       137 ll~~~~  142 (203)
                      |+++..
T Consensus       133 il~~~~  138 (157)
T 2emq_A          133 VLKQLN  138 (157)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            997643

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.74  E-value=1.1e-08  Score=79.87  Aligned_cols=60  Identities=13%  Similarity=0.229  Sum_probs=55.1

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      ....+++++|.+  ++.++.+++++.+|++.|.+++++.+||+| +|+++|+||..||+++..
T Consensus       105 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~  164 (185)
T 2j9l_A          105 PPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIA  164 (185)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            356789999998  899999999999999999999999999999 899999999999997643

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.69  E-value=2e-09  Score=98.79  Aligned_cols=96  Identities=22%  Similarity=0.170  Sum_probs=0.4

Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccCCccchH--
Q 028824           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW--  161 (203)
Q Consensus        87 diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~~~~--  161 (203)
                      ..|..  +++++.++.|+.|++++|.+++++.+||+|+   +++|+||||.+|+...   ....++.++|++++.+..  
T Consensus       142 ~g~i~--dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~---d~~~~V~evMT~~lvt~~~~  216 (556)
T 4af0_A          142 NGFIT--DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ---DAETPIKSVMTTEVVTGSSP  216 (556)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCccC--CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc---ccceEhhhhcccceEEecCC
Confidence            35666  7999999999999999999999999999986   5799999999998742   345678899988654321  


Q ss_pred             ---H---------HHhhhc-eeeCCcEEEEEehhhHHHH
Q 028824          162 ---K---------VCEKCL-SFENYICLGSLSLKFLTFL  187 (203)
Q Consensus       162 ---~---------~~~~ll-v~~~g~lvGiVt~~DI~~~  187 (203)
                         +         ..++++ ++++++++|+||.+|+.+.
T Consensus       217 ~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          217 ITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             ---------------------------------------
T ss_pred             CCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhh
Confidence               1         123444 5578999999999999443

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.67  E-value=1.1e-08  Score=78.32  Aligned_cols=71  Identities=15%  Similarity=0.200  Sum_probs=61.5

Q ss_pred             cceEecccccCC-----------CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHH
Q 028824           68 SGTLTANSAAPS-----------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD  136 (203)
Q Consensus        68 ~g~~~~~~l~~~-----------~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~D  136 (203)
                      .|.++.+++...           ....+++++|.+  ++.++.+++++.++++.|.++++  +||+|++|+++|+||..|
T Consensus        60 vGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~d  135 (159)
T 1yav_A           60 HGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRV  135 (159)
T ss_dssp             EEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHH
T ss_pred             EEEeEHHHHHHHhhhhcccchhhhccCCHHHhcCC--CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHH
Confidence            788888876321           356789999998  89999999999999999999887  999998899999999999


Q ss_pred             Hhhchh
Q 028824          137 LLALDS  142 (203)
Q Consensus       137 ll~~~~  142 (203)
                      |+++..
T Consensus       136 il~~~~  141 (159)
T 1yav_A          136 VLKELN  141 (159)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            997643

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.65  E-value=1.7e-08  Score=77.05  Aligned_cols=72  Identities=15%  Similarity=0.105  Sum_probs=61.2

Q ss_pred             cceEecccccCCC----------CccccccccccCCC------eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEE
Q 028824           68 SGTLTANSAAPSS----------GVYTVGDFMTTKEE------LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (203)
Q Consensus        68 ~g~~~~~~l~~~~----------~~~~V~diM~~~~~------~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGi  131 (203)
                      .|.++.+++....          ...++.++|.+  +      +.++.+++++.++++.|.+++++.+||+| +|+++|+
T Consensus        59 ~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Gi  135 (164)
T 2pfi_A           59 VGIVQRAQLVQALQAEPPSRAPGHQQCLQDILAR--GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGC  135 (164)
T ss_dssp             EEEEEHHHHHHHHHC-------CCCCBHHHHHHT--TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEE
T ss_pred             EEEEEHHHHHHHHHhhccccCCcccchhhhhhcc--cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEE
Confidence            7888887773221          23579999987  5      78999999999999999999999999999 7999999


Q ss_pred             EehHHHhhchh
Q 028824          132 VSDYDLLALDS  142 (203)
Q Consensus       132 Vt~~Dll~~~~  142 (203)
                      ||..||+++..
T Consensus       136 it~~dil~~~~  146 (164)
T 2pfi_A          136 VSWVEMKKAIS  146 (164)
T ss_dssp             EEHHHHHHHHH
T ss_pred             EEHHHHHHHHH
Confidence            99999997643

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.64  E-value=1.9e-08  Score=79.16  Aligned_cols=85  Identities=18%  Similarity=0.072  Sum_probs=65.8

Q ss_pred             ccccccccccCCccccccceEecccccCCC---CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCe
Q 028824           51 TSSDRVSALRRSSAVFASGTLTANSAAPSS---GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK  127 (203)
Q Consensus        51 ~~~~~~~~~r~~~~~~~~g~~~~~~l~~~~---~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~  127 (203)
                      ++..||...  ..... .|+++.+++....   ...+++ +| +  ++.++++++++.+|++.|.+++++.+||+|++|+
T Consensus        69 ~~~~pVvd~--~~~~l-vGivt~~Dl~~~~~~~~~~~v~-~~-~--~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~  141 (173)
T 3ocm_A           69 HSFFPVCRG--SLDEV-VGIGRAKDLVADLITEGRVRRN-RL-R--DPIIVHESIGILRLMDTLKRSRGQLVLVADEFGA  141 (173)
T ss_dssp             CSEEEEESS--STTSE-EEEEEHHHHHHHHHHHSSCCGG-GS-B--CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCC
T ss_pred             CCEEEEEeC--CCCCE-EEEEEHHHHHHHHhcCCcchhH-hc-C--CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCC
Confidence            344555431  11234 7999988874321   356777 44 5  6899999999999999999999999999999999


Q ss_pred             EEEEEehHHHhhchh
Q 028824          128 LVGLVSDYDLLALDS  142 (203)
Q Consensus       128 lvGiVt~~Dll~~~~  142 (203)
                      ++|+||..||++...
T Consensus       142 lvGiIT~~Dil~~l~  156 (173)
T 3ocm_A          142 IEGLVTPIDVFEAIA  156 (173)
T ss_dssp             EEEEECHHHHHHHHH
T ss_pred             EEEEEeHHHHHHHHh
Confidence            999999999997643

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.63  E-value=2.7e-08  Score=90.39  Aligned_cols=84  Identities=21%  Similarity=0.311  Sum_probs=70.9

Q ss_pred             ccccccccccCCccccccceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEE
Q 028824           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (203)
Q Consensus        51 ~~~~~~~~~r~~~~~~~~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvG  130 (203)
                      ++..+|...   .... -|.++.+++.....+.+++++|++  ++++++++++++++++.|.++++..+||+|++|+++|
T Consensus       191 ~~~ipVvd~---~~~l-vGiVt~~Dll~~~~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvG  264 (473)
T 2zy9_A          191 IYYIYVVDE---KGRL-KGVLSLRDLIVADPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVG  264 (473)
T ss_dssp             EEEEEEECT---TSBE-EEEEEHHHHHHSCTTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEE
T ss_pred             eeEEEEECC---CCcE-EEEEEHHHHhcCCCCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEE
Confidence            344555543   1234 799999988555567899999988  8999999999999999999999999999999999999


Q ss_pred             EEehHHHhhc
Q 028824          131 LVSDYDLLAL  140 (203)
Q Consensus       131 iVt~~Dll~~  140 (203)
                      +||.+|+++.
T Consensus       265 iIT~~Dil~~  274 (473)
T 2zy9_A          265 IVTVDDVLDV  274 (473)
T ss_dssp             EEEHHHHHHH
T ss_pred             EEehHhhHHH
Confidence            9999999975

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.61  E-value=1.9e-09  Score=98.73  Aligned_cols=102  Identities=21%  Similarity=0.223  Sum_probs=44.5

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccC--Cc
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFP--EV  157 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~--~v  157 (203)
                      .+++++|.+  +++++.+++++.+|+++|.+++++.+||+|+   +|+++|+||.+|+...........+.++|.+  ++
T Consensus       108 ~~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~~  185 (514)
T 1jcn_A          108 KNFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIEL  185 (514)
T ss_dssp             HTCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC----------------CCBCC
T ss_pred             hhhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCCC
Confidence            357899998  8999999999999999999999999999997   5899999999999864221234467777876  43


Q ss_pred             cc---------hHHHH-----hhhcee-eCCcEEEEEehhhHHH
Q 028824          158 DS---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTF  186 (203)
Q Consensus       158 ~~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~  186 (203)
                      ..         ..+.+     ..+++. ++|+++|+||++|++.
T Consensus       186 ~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~  229 (514)
T 1jcn_A          186 VVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKK  229 (514)
T ss_dssp             CCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSS
T ss_pred             eEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHH
Confidence            21         11222     345544 5899999999999943

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.55  E-value=1e-08  Score=94.08  Aligned_cols=90  Identities=21%  Similarity=0.283  Sum_probs=0.0

Q ss_pred             ccccccccccccCCccccccceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeE
Q 028824           49 LATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (203)
Q Consensus        49 ~~~~~~~~~~~r~~~~~~~~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~l  128 (203)
                      ..+|..||...-...... .|+++.++++......+|+++|++  ++++++++.+++||.++|.++++..+||+|++|+|
T Consensus       167 ~~isgvpVvd~g~~~~kL-vGIvT~RD~rf~d~~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~L  243 (556)
T 4af0_A          167 FGFCGVPITETGEPDSKL-LGIVTGRDVQFQDAETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHL  243 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hCCCccccccccCcCCEE-EEEEecccccccccceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccCCcE
Confidence            456677776432222234 799999999777778899999998  89999999999999999999999999999999999


Q ss_pred             EEEEehHHHhhch
Q 028824          129 VGLVSDYDLLALD  141 (203)
Q Consensus       129 vGiVt~~Dll~~~  141 (203)
                      +|+||.+|+.+..
T Consensus       244 vGlIT~kDi~k~~  256 (556)
T 4af0_A          244 VSLVARSDLLKNQ  256 (556)
T ss_dssp             -------------
T ss_pred             EEEEEechhhhhh
Confidence            9999999999754

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.50  E-value=1.4e-08  Score=92.54  Aligned_cols=98  Identities=23%  Similarity=0.323  Sum_probs=1.6

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCccc----
Q 028824           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS----  159 (203)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~~----  159 (203)
                      .+.++|..  ++.++.+++++.++++.|.+++++.+||+|+ ++++|+|+.+||+.    .....+.++|.+++..    
T Consensus        94 ~~~~~m~~--~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~----~~~~~v~~im~~~~~~v~~~  166 (486)
T 2cu0_A           94 RAERLIVE--DVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA----REGKLVKELMTKEVITVPES  166 (486)
T ss_dssp             TCC-----------------------------------------------------------------------------
T ss_pred             chhhcccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc----CCCCCHHHHccCCCeEECCc
Confidence            45678988  8999999999999999999999999999997 99999999999985    2344677777754321    


Q ss_pred             -----hHHHH-----hhhce-eeCCcEEEEEehhhHHHHH
Q 028824          160 -----TWKVC-----EKCLS-FENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       160 -----~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L  188 (203)
                           ..+.+     ..+++ +++|+++|+||.+|++..+
T Consensus       167 ~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          167 IEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             ----------------------------------------
T ss_pred             CcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhh
Confidence                 11112     23444 4579999999999995543

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.48  E-value=1.2e-07  Score=88.92  Aligned_cols=54  Identities=20%  Similarity=0.023  Sum_probs=50.1

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        85 V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ++++|++  ++.++++++++.|+++.|.+++++.+||+ ++|+++|+||.+|+++..
T Consensus       570 v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~  623 (632)
T 3org_A          570 LVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGY  623 (632)
T ss_dssp             -CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECC
T ss_pred             cchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHH
Confidence            7889999  89999999999999999999999999999 689999999999998754

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.40  E-value=3.2e-07  Score=84.23  Aligned_cols=74  Identities=27%  Similarity=0.343  Sum_probs=65.9

Q ss_pred             cceEeccccc-CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~-~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .|+++.+++. ......+++++|++ ++++++++++++.+++++|.++++..+||+|++|+++|+||.+||++...
T Consensus       159 vGiVt~rDl~~~~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          159 VGIITNRDMRFIQDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIE  233 (511)
T ss_dssp             EEEEEHHHHTTCCCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             EEEEEehHhhhhccCCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhh
Confidence            7899988884 34567889999995 36899999999999999999999999999999999999999999997654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.34  E-value=5.6e-08  Score=89.00  Aligned_cols=75  Identities=28%  Similarity=0.315  Sum_probs=0.0

Q ss_pred             cceEeccccc--CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAA--PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~--~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .|+++.+++.  ......+|+++|++.++++++++++++.+|+++|.+++++.+||+|++|+++|+||.+||++...
T Consensus       144 vGiVt~~Dl~~~~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          144 LGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             EEEEEHHHHHhhhccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhh
Confidence            6888888885  34566789999998223999999999999999999999999999999999999999999997643

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.31  E-value=5.6e-07  Score=75.39  Aligned_cols=53  Identities=15%  Similarity=0.045  Sum_probs=49.4

Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        87 diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .+|.+  .++++.+++++.++..+|...+++++||++ +|+|+||||.+||+++..
T Consensus       193 ~~md~--sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          193 CRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             SCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccccC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            47998  899999999999999999999999999998 699999999999998754

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.30  E-value=7.9e-08  Score=87.79  Aligned_cols=74  Identities=28%  Similarity=0.364  Sum_probs=0.0

Q ss_pred             cceEeccccc-CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~-~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      -|+++.+++. ......+|+++|+++++++++++++++.+++++|.++++..+||+|++|+++|+||.+|+++..
T Consensus       131 vGIVt~rDl~~~~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          131 VGIVTGRDLRVKPNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             EEEEEhHHhhhccccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhc
Confidence            7888888884 3456678999999432489999999999999999999999999999999999999999999764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.25  E-value=1.2e-07  Score=86.78  Aligned_cols=74  Identities=26%  Similarity=0.377  Sum_probs=54.1

Q ss_pred             cceEeccccc-CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~-~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      -|+++.+++. ......+++++|+++++++++++++++.+++++|.++++..+||+|++|+++|+||.+||++..
T Consensus       133 vGiVt~rDL~~~~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          133 VGIITGRDVRFVTDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             EEEEEHHHHTTCCCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             EEEEEHHHHhhcccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence            7899999984 4456788999999332489999999999999999999999999999999999999999999753

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.23  E-value=1.1e-06  Score=80.57  Aligned_cols=86  Identities=7%  Similarity=0.062  Sum_probs=67.5

Q ss_pred             ccccccccccCCccccccceEeccccc------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC
Q 028824           51 TSSDRVSALRRSSAVFASGTLTANSAA------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD  124 (203)
Q Consensus        51 ~~~~~~~~~r~~~~~~~~g~~~~~~l~------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~  124 (203)
                      ++..||...  +.... .|.++.+++.      ......+|+++|++  +++++.+++++.+++++|.++++  +||+|+
T Consensus       416 ~~~lpVvd~--~~g~l-vGiVt~~Dll~~l~~~~~~~~~~V~~im~~--~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~  488 (527)
T 3pc3_A          416 VDQLPVVDQ--DDGSV-LGVVGQETLITQIVSMNRQQSDPAIKALNK--RVIRLNESEILGKLARVLEVDPS--VLILGK  488 (527)
T ss_dssp             CSEEEEECT--TTCCE-EEEEEHHHHHHHHHHHCCCTTSBGGGGEET--TCCEEETTSBHHHHHHHHTTCSE--EEEEEE
T ss_pred             CCeEEEEEC--CCCEE-EEEEEHHHHHHHHHhccCcCCCcHHHHhcC--CCeEECCCCcHHHHHHHHhhCCE--EEEEeC
Confidence            444555541  12234 7999988884      34556799999998  89999999999999999987765  799998


Q ss_pred             C----CeEEEEEehHHHhhchhh
Q 028824          125 D----WKLVGLVSDYDLLALDSI  143 (203)
Q Consensus       125 ~----g~lvGiVt~~Dll~~~~~  143 (203)
                      +    |+++||||..||+++...
T Consensus       489 ~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          489 NPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             CSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             CcccCCeEEEEEEHHHHHHHHHh
Confidence            4    899999999999987543

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.17  E-value=2.8e-06  Score=77.03  Aligned_cols=74  Identities=26%  Similarity=0.339  Sum_probs=63.5

Q ss_pred             cceEecccccC-CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~~-~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .|.++.+++.. .....+++++|++. +++++++++++.++++.|.++++..+||+|++|+++|+||.+||++...
T Consensus       136 vGivt~~Dl~~~~~~~~~v~~im~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          136 VGIITNRDMRFISDYNAPISEHMTSE-HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             EEEEEHHHHHHCSCSSSBTTTSCCCS-CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHhhhccCCCcHHHHcCCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence            68888887732 23567899999852 4789999999999999999999999999999999999999999997644

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.10  E-value=3.8e-07  Score=83.01  Aligned_cols=72  Identities=38%  Similarity=0.539  Sum_probs=0.4

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .|+++.+++.. ....+++++|++  +++++++++++.++++.|.+++++.+||+|++|+++|+||.+||++...
T Consensus       136 vGivt~~Dl~~-~~~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          136 VGIITKKDIAA-REGKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             --------------------------------------------------------------------------C
T ss_pred             EEEEEHHHhcc-CCCCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence            67787777754 456789999998  8999999999999999999999999999999999999999999997643

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.10  E-value=3.5e-07  Score=83.17  Aligned_cols=74  Identities=32%  Similarity=0.488  Sum_probs=3.8

Q ss_pred             cceEecccccC-CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~-~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|+++.+++.. .....+++++|++.+++.++.+++++.++++.|.++++..+||+|++|+++|+||.+|+++..
T Consensus       139 vGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  213 (494)
T 1vrd_A          139 VGLLTNRDVRFEKNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI  213 (494)
T ss_dssp             ----------------------------------------------------------------------CHHHH
T ss_pred             EEEEEHHHHHhhcCCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhh
Confidence            67787777732 234578999998544689999999999999999999999999999999999999999999764

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.97  E-value=3.7e-07  Score=83.56  Aligned_cols=74  Identities=26%  Similarity=0.306  Sum_probs=51.0

Q ss_pred             cceEecccccCC---CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPS---SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~---~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|+++.+++...   ....+++++|++.++++++.+++++.+++++|.++++..+||+|++|+++|+||.+||++..
T Consensus       155 vGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          155 VGIVTSRDIDFLAEKDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             CCEECTTTTC----------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             EEEEEHHHHHhhhhccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence            788888887442   35678999998644689999999999999999999999999999999999999999999764

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=90.11  E-value=0.24  Score=32.64  Aligned_cols=21  Identities=14%  Similarity=0.151  Sum_probs=18.2

Q ss_pred             hhhceeeCCcEEEEEehhhHH
Q 028824          165 EKCLSFENYICLGSLSLKFLT  185 (203)
Q Consensus       165 ~~llv~~~g~lvGiVt~~DI~  185 (203)
                      ..+++.++|+++|++|..|++
T Consensus        24 ~~~~V~d~~~lvGIvT~~Di~   44 (70)
T 3ghd_A           24 GSAVVMEGDEILGVVTERDIL   44 (70)
T ss_dssp             SEEEEEETTEEEEEEEHHHHH
T ss_pred             CEEEEEECCEEEEEEEHHHHH
Confidence            457788899999999999993

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	3e-09
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.002
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	2e-08
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	2e-05
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	2e-08
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	2e-05
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	6e-08
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-04
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	6e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	5e-06
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	7e-08
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	8e-07
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	1e-07
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	2e-05
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	1e-07
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	5e-05
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	2e-07
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	4e-07
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	8e-07
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	0.001
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	9e-07
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-05
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	2e-06
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	2e-06
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	3e-06
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	2e-04
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	3e-06
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	5e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	4e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	3e-05
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	6e-06
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	0.001
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	1e-05
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	9e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	1e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	4e-04
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-04
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	2e-05
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	0.001
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	4e-05
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	0.004
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	6e-05
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	1e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	1e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	4e-04
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	2e-04
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	2e-04

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 50.9 bits (121), Expect = 3e-09
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 76  AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135
                    + + MT +E+L V     T+ EA EIL   +    P+++++ +LV +++  
Sbjct: 54  LKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIART 113

Query: 136 DLL 138
           DL 
Sbjct: 114 DLK 116

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLL 138
           V+ P   V +  E        G P+ D      +LVG++S  D+ 
Sbjct: 8   VLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDID 52

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                       +       T++  +  LVE  +    V+D+   + G+VS  D+L
Sbjct: 84  LQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 137

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 84  TVGDFM-TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           ++ +    T   + +V+ TT V  AL I V+ R++  PV+D+  ++V + S +D++ L +
Sbjct: 10  SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA 69

Query: 143 ISGSGRADNSM 153
                  D S+
Sbjct: 70  EKTYNNLDVSV 80

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 48.7 bits (115), Expect = 2e-08
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D MT     H +  T T+++A  ++    I   P++D + KL+G+VS  DLLA    
Sbjct: 3   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES 60

Query: 144 SGSGRADNSMFPEVDSTWKVC 164
           S    A           ++V 
Sbjct: 61  SLQRSAQGDSLAFETPLFEVM 81

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V P   + E+   + + +I   PV+  D  LVG+++D D +
Sbjct: 86  TSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFV 127

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.2 bits (111), Expect = 6e-08
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D+
Sbjct: 2   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDI 53

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + V    ++ E L ++ E ++   PVI +  +LVG+V++ D+ 
Sbjct: 78  YYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIA 119

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 47.5 bits (112), Expect = 6e-08
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           TV   +  K   +  + P  +V  A++ +    I    V+ D+   VG++++ D      
Sbjct: 3   TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKL-VGILTERDFSRKSY 61

Query: 143 ISGSGRADNSMFPEVDSTWKVCEKCLSFENYICL 176
           +      D  +   +       +   + E+ + L
Sbjct: 62  LLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMAL 95

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 42.1 bits (98), Expect = 5e-06
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V    T ++ + ++ E R+   PV+DD  K++GL+S  DL+
Sbjct: 81  AYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 122

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (112), Expect = 7e-08
 Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 83  YTVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             +GD  + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L
Sbjct: 6   IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL 62

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (104), Expect = 8e-07
 Identities = 10/43 (23%), Positives = 23/43 (53%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 92  YTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 134

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.9 bits (110), Expect = 1e-07
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              + M    +   V   T ++EAL+++++  I   PV+D+  ++VG ++  ++L
Sbjct: 85  NASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 136

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V  V   ++ K    VV+  T ++E ++ ++E  +T    +  D KLVG++    LL
Sbjct: 3   VKDVCKLISLK--PTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLL 57

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +  +MT   +L  VKP+T+V EA  +++E  +    VI+DD  +VG  +  D++
Sbjct: 6   PIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDII 58

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.4 bits (91), Expect = 5e-05
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                 T + E L  + E RI    + ++  K+VG+ +  DLL
Sbjct: 81  ITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLL 122

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.8 bits (107), Expect = 2e-07
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVG FM   +++  V+    ++ AL +L +   T  PV+D  ++L GL+    ++
Sbjct: 3   TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM 57

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.8 bits (107), Expect = 4e-07
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD 136
            +  +      + +V   T +  AL+ L+       PV+D +  LVG+V + D
Sbjct: 5   EIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETD 55

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT      V  P  TV E    + +  I   PVI  +  L+GL+ D+DLL
Sbjct: 100 PVAEIMTRDV--IVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 44.6 bits (104), Expect = 8e-07
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG 130
           ++ V  FM+T  ++  +     +D+A+++++ +     PVIDDD K+VG
Sbjct: 1   IFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVG 47

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D M T      +    +V+ A   ++ KRI    +++ D  + G++++ DLL
Sbjct: 74  VVKDVMVTNL--VTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL 126

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.8 bits (105), Expect = 9e-07
 Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 1/85 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-VIDDDWKLVGLVSDYDLLALDS 142
              D + T  +L V   +  V +A   LV   +   P         VG+++  D + +  
Sbjct: 14  RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILH 73

Query: 143 ISGSGRADNSMFPEVDSTWKVCEKC 167
                        E        E  
Sbjct: 74  RYYKSALVQIYELEEHKIETWREVY 98

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 51  TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEI 110
           T +D ++ L R                  +                 + P  ++ +A+  
Sbjct: 64  TITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPL--VCISPNASLFDAVSS 121

Query: 111 LVEKRITGFPVIDDDW-KLVGLVSDYDLL 138
           L+  +I   PVID +    + +++   +L
Sbjct: 122 LIRNKIHRLPVIDPESGNTLYILTHKRIL 150

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135
            V   M +      V   TTV +A++I+ E  + G  V DD+   VGL+S+ 
Sbjct: 4   RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSER 53

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               V +    L E  +    V+DD  ++VG+V+  DL 
Sbjct: 84  SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS 122

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           F         V     +  AL + +E +    PV+D++ +L G VS +D L
Sbjct: 63  FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFL 113

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSD 134
           V  ++T   +  +V+ + TV E L  + + +     V D +    G+V+ 
Sbjct: 3   VKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNK 50

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + D +     +  V      ++  + + +      PV D D  L+G+V+  D++
Sbjct: 67  IADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDII 118

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVS--DYD 136
           T G  MTT  E   +    TV  A+ +L  +      I    V+D +  LVG++S  D  
Sbjct: 2   TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI 59

Query: 137 LLALDSISGSGRADNSMFPEVDSTWKVCEKCLSFENYICL 176
           +   D++      +  +   V    +   + +   +++ +
Sbjct: 60  VNDDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAV 99

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-06
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 84  TVGDFMTTKEELHVV----KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDL 137
              D M  +    ++    + + TV++   I+ E   +GFPV+   +  +LVG V   DL
Sbjct: 4   LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 63

Query: 138 L 138
           +
Sbjct: 64  I 64

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 5e-06
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + +        V   T ++  ++I  +  +    V  +  +L+G+++  D+L
Sbjct: 101 KLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVL 152

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 42.2 bits (98), Expect = 4e-06
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           V D M T  ++  +  T ++++ L   VE       V+ +  ++
Sbjct: 2   VEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRV 43

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.8 bits (92), Expect = 3e-05
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             + P  T+ EA E +V+  +    V +DD +++G++S  D+L
Sbjct: 75  VTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISATDIL 116

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 42.2 bits (98), Expect = 6e-06
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 79  RPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 129

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 85  VGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           +      T   L      T V + +++L EK I+  P+++ +  L+ +    D+
Sbjct: 3   LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDV 56

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 95  LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + VVK   T+ +A ++++E       V+D   K VG+++  D++
Sbjct: 70  VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.3 bits (88), Expect = 9e-05
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           V   MT       +    T + ALE+  + ++  FPV++ + 
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEG 42

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 41.2 bits (95), Expect = 1e-05
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            + D+MT       V  T+    A+ I+V +     PV+D + K VG+V++ + L L
Sbjct: 75  PIIDYMTPNP--VTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLL 129

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.9 bits (84), Expect = 4e-04
 Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 2/41 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
            +   M       ++     +  A + + E  I    V ++
Sbjct: 2   NIETLMIKN--PPILSKEDRLGSAFKKINEGGIGRIIVANE 40

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
            V ++M T  ++  V     +++  +++ EK I    V+D + 
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK 45

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSI 143
            ++ +  I   PV+DD   L G++S  D+  A+D +
Sbjct: 91  ALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               +    +   T++ +   +     +    V     KLVG+V+  ++ 
Sbjct: 107 CRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMG-KLVGVVALAEIQ 155

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
            VGD M    ++  +  T+T  + L +L + ++  FP +D 
Sbjct: 12  QVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDT 50

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 40.4 bits (93), Expect = 4e-05
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLL 138
                E   V P  ++ +A   + + R    P+ID D       +V +++ Y +L
Sbjct: 111 GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL 165

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           T  D + T   L V   T  V  +L +L    I   P+ D + 
Sbjct: 21  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA 63

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMF 154
            + P   V EA E++   RI+G P+++     KLVG++++ D+  +   +       +  
Sbjct: 9   FLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSE 68

Query: 155 PEV 157
             V
Sbjct: 69  HLV 71

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              T ++ A  IL E RI   P++D+  +L GL++  D+ 
Sbjct: 74  AVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE 113

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYD 136
             G  MT   E   V+   TV+E L  L         I    V+D+  +L G++S  D
Sbjct: 2   EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRD 57

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 87  DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + M  K     V+  T  +E   ++ +   T  PV+D++ +LVG+V+  D+L
Sbjct: 69  EIMNPKV--VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 118

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V  T  V  A E +    I    V++ + +LVG++S  DL 
Sbjct: 77  ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 119

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 4/49 (8%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVG 130
              + +        +  T T+ E    L + R+    +    +  + V 
Sbjct: 2   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVA 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.64
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.63
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.62
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.58
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.56
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.55
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.55
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.53
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.53
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.53
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.52
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.52
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.49
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.48
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.46
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.45
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.44
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.4
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.35
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.34
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.31
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.31
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.3
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.28
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.27
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.26
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.18
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.14
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.12
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.08
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.03
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.02
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.01
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.0
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.99
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.95
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.93
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.92
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.9
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.86
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.81
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.8
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.78
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.76
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.76
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.71
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.68
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.67
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.6
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.54
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.5
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.35
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	85.69

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.64  E-value=2.4e-16  Score=118.79  Aligned_cols=111  Identities=24%  Similarity=0.249  Sum_probs=88.3

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-----------CCCcccc
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-----------GSGRADN  151 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-----------~~~~v~~  151 (203)
                      ++|+|+|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|++++....           ...++.+
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~   79 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE   79 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhH
Confidence            589999998  899999999999999999999999999999999999999999999664321           1234566


Q ss_pred             CccCCccc---------hHHHH-----hhhceeeCCcEEEEEehhhHHHHHHHHhccc
Q 028824          152 SMFPEVDS---------TWKVC-----EKCLSFENYICLGSLSLKFLTFLLIFVNGLK  195 (203)
Q Consensus       152 ~m~~~v~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L~a~~~l~  195 (203)
                      +|..++..         +...|     ..+++.++|+++|+||..|++..+....+++
T Consensus        80 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~~~~~~~~~  137 (139)
T d2o16a3          80 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLELQ  137 (139)
T ss_dssp             HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHHHHHHH
T ss_pred             hhccccccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHHHHHHHHhhc
Confidence            66654421         22222     4577888999999999999977777666543

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.63  E-value=1.4e-15  Score=113.60  Aligned_cols=105  Identities=23%  Similarity=0.244  Sum_probs=85.8

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh---cCCCccccCccCCcc
Q 028824           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---SGSGRADNSMFPEVD  158 (203)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~---~~~~~v~~~m~~~v~  158 (203)
                      ..+|+++|++  +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+++....   .....+.++|.+++.
T Consensus         4 ~~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~~   81 (132)
T d2yzia1           4 KAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLI   81 (132)
T ss_dssp             TSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCC
T ss_pred             CCcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCccceeEeeccccccc
Confidence            3479999998  99999999999999999999999999999999999999999999865332   233468888877653


Q ss_pred             c---------hHHHH-----hhhceeeCCcEEEEEehhhHHHHH
Q 028824          159 S---------TWKVC-----EKCLSFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       159 ~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L  188 (203)
                      .         ..+.|     +.+++.++|+++|+|+..|+++.+
T Consensus        82 ~v~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~~Dil~a~  125 (132)
T d2yzia1          82 TANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEAS  125 (132)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             ccCcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence            1         22222     457888999999999999994443

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=2e-16  Score=116.92  Aligned_cols=102  Identities=19%  Similarity=0.238  Sum_probs=81.1

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC----CCccccCccCCcc
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----SGRADNSMFPEVD  158 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~----~~~v~~~m~~~v~  158 (203)
                      ++++|+|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+||++.....+    ...++++|.+++.
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~~   78 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY   78 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred             CCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeeccce
Confidence            478999998  8999999999999999999999999999999999999999999976432222    2345667766543


Q ss_pred             c---------hHHHH-----hhhceeeCCcEEEEEehhhHHH
Q 028824          159 S---------TWKVC-----EKCLSFENYICLGSLSLKFLTF  186 (203)
Q Consensus       159 ~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~  186 (203)
                      .         ..+.+     .++++.++|+++|+||..|+++
T Consensus        79 ~v~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~  120 (123)
T d1y5ha3          79 YVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIAR  120 (123)
T ss_dssp             CEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             eeeecchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHh
Confidence            1         22222     4577888999999999999943

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.58  E-value=2.1e-15  Score=112.44  Aligned_cols=107  Identities=18%  Similarity=0.261  Sum_probs=81.8

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh--------cCCCccccCcc
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--------SGSGRADNSMF  154 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~--------~~~~~v~~~m~  154 (203)
                      .+|+++|.+.+++.++.+++++.+|++.|.+++++++||+|++|+++|+|+.+|+++....        .....+.++|.
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~   81 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVML   81 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSB
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccccccccccccccccccc
Confidence            5789999877689999999999999999999999999999999999999999999976432        12234556666


Q ss_pred             CCccc---------hHHHH---hhhc-eeeCCcEEEEEehhhHHHHHH
Q 028824          155 PEVDS---------TWKVC---EKCL-SFENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       155 ~~v~~---------~~~~~---~~ll-v~~~g~lvGiVt~~DI~~~L~  189 (203)
                      +++..         ....+   ..++ ++++|+++|+||.+|+++.+.
T Consensus        82 ~~~~~v~~~~~l~~~~~~~~~~~~l~Vvd~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          82 TDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             CSCCEEETTSBHHHHHHHTTTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHhCCEEEEEccCCEEEEEEEHHHHHHHHH
Confidence            54431         11222   1133 457899999999999955443

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.56  E-value=4.7e-15  Score=108.98  Aligned_cols=102  Identities=20%  Similarity=0.190  Sum_probs=82.1

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCccc-
Q 028824           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEVDS-  159 (203)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v~~-  159 (203)
                      +|+|+|++  ++.++++++|+.||++.|.+++++.+||++ +|+++|+||.+||+++....   ....+.++|.+++.. 
T Consensus         1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~~v   77 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTI   77 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeeccccccccccccceeEeeecccccccc
Confidence            57899999  999999999999999999999999999987 58999999999999764432   233677777665431 


Q ss_pred             --------hHHHH-----hhhceeeCCcEEEEEehhhHHHHHHHH
Q 028824          160 --------TWKVC-----EKCLSFENYICLGSLSLKFLTFLLIFV  191 (203)
Q Consensus       160 --------~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L~a~  191 (203)
                              +.+.+     ..+++.++|+++|+||..|+   ++|.
T Consensus        78 ~~~~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~~Di---l~A~  119 (120)
T d1pbja3          78 SPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDI---LRAK  119 (120)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHH---HHHH
T ss_pred             cchhHHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHH---HhcC
Confidence                    22222     45788899999999999999   6653

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=6.1e-15  Score=112.22  Aligned_cols=104  Identities=20%  Similarity=0.140  Sum_probs=80.0

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh-----------------
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-----------------  143 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~-----------------  143 (203)
                      ++++|+++|++  +++++++++++.+|++.|.+++++++||+|++|+++|+||..|+++....                 
T Consensus         2 ~~~~v~~~m~r--~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (156)
T d2yzqa1           2 KGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEW   79 (156)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC---------------
T ss_pred             CCCCHHHHhcC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhh
Confidence            57899999999  99999999999999999999999999999999999999999999754221                 


Q ss_pred             ----------------cCCCccccCccCCccc---------hHHHH-----hhhce-eeCCcEEEEEehhhHHH
Q 028824          144 ----------------SGSGRADNSMFPEVDS---------TWKVC-----EKCLS-FENYICLGSLSLKFLTF  186 (203)
Q Consensus       144 ----------------~~~~~v~~~m~~~v~~---------~~~~~-----~~llv-~~~g~lvGiVt~~DI~~  186 (203)
                                      .....+.++|.+++..         ..+.+     .++++ +++|+++|+||.+|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~  153 (156)
T d2yzqa1          80 ILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLK  153 (156)
T ss_dssp             -----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGG
T ss_pred             hhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHH
Confidence                            0112355666654421         11222     33544 46899999999999943

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=2.2e-14  Score=105.44  Aligned_cols=102  Identities=23%  Similarity=0.172  Sum_probs=81.4

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCccc---
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS---  159 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~~---  159 (203)
                      ++|+++|++  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+|+.+|++++..   ...+.++|..++..   
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~---~~~v~~~~~~~~~~v~~   75 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL---DSSVFNKVSLPDFFVHE   75 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT---TSBSGGGCBCTTCCEET
T ss_pred             CCchhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhc---cccccccccCccEEECC
Confidence            478999999  9999999999999999999999999999999999999999999987532   34566666654321   


Q ss_pred             ------hHHHH-----hhhc-eeeCCcEEEEEehhhHHHHHH
Q 028824          160 ------TWKVC-----EKCL-SFENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       160 ------~~~~~-----~~ll-v~~~g~lvGiVt~~DI~~~L~  189 (203)
                            ..+.+     ..++ ++++|+++|+||..|+++.+.
T Consensus        76 ~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          76 EDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             TSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHH
Confidence                  22222     2244 567899999999999955544

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.53  E-value=3.9e-14  Score=104.81  Aligned_cols=106  Identities=18%  Similarity=0.205  Sum_probs=83.4

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh--cCCCccccCccCCcc
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--SGSGRADNSMFPEVD  158 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~--~~~~~v~~~m~~~v~  158 (203)
                      ++..|+++|++  +++++.+++++.+|++.|.+++++.+||+| +|+++|+||.+|+++....  .....+.++|.+++.
T Consensus         2 ~~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~~   78 (127)
T d2ef7a1           2 EEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLI   78 (127)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECCC
T ss_pred             CccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhccccchhhhhhhhhcc
Confidence            56789999998  999999999999999999999999999998 5899999999999976432  234467777766543


Q ss_pred             c---------hHHHH-----hhhce-eeCCcEEEEEehhhHHHHHH
Q 028824          159 S---------TWKVC-----EKCLS-FENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       159 ~---------~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~  189 (203)
                      .         ..+.+     ..+++ +++|+++|+||..|+++.+.
T Consensus        79 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence            1         12222     33444 46889999999999966554

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.53  E-value=1.4e-14  Score=109.40  Aligned_cols=104  Identities=23%  Similarity=0.243  Sum_probs=82.7

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc----CCCccccCccCCcc
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----GSGRADNSMFPEVD  158 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~----~~~~v~~~m~~~v~  158 (203)
                      ++|+|+|++  ++.++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.....    ....++++|..++.
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~~   80 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIP   80 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCC
T ss_pred             EEHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcccccccccccccccccc
Confidence            689999999  999999999999999999999999999999999999999999998653322    22357788877653


Q ss_pred             c---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHH
Q 028824          159 S---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       159 ~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L  188 (203)
                      .         ..+.+     ..+++. ++|+++|+|+..|++..+
T Consensus        81 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          81 KVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             EEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             cccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHH
Confidence            1         22222     345444 578999999999996544

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.53  E-value=3.2e-14  Score=105.43  Aligned_cols=102  Identities=20%  Similarity=0.259  Sum_probs=80.3

Q ss_pred             ccccccccC-CCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc----CCCccccCccCCcc
Q 028824           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----GSGRADNSMFPEVD  158 (203)
Q Consensus        84 ~V~diM~~~-~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~----~~~~v~~~m~~~v~  158 (203)
                      +|+|+|+.+ .+++++.+++++.+|++.|.+++++++||+| +|+++|+||.+|+++.....    ....+.++|..++.
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~~   81 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVA   81 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCC
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcccccceeEeeeccceeE
Confidence            689999853 2789999999999999999999999999998 68999999999998643222    23467788877653


Q ss_pred             c---------hHHHH-----hhhceeeCCcEEEEEehhhHHH
Q 028824          159 S---------TWKVC-----EKCLSFENYICLGSLSLKFLTF  186 (203)
Q Consensus       159 ~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~  186 (203)
                      .         ....+     .++++.++|+++|+||..|++.
T Consensus        82 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~GiIt~~Dil~  123 (127)
T d2rc3a1          82 YVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVK  123 (127)
T ss_dssp             CBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             EeccCccHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHH
Confidence            2         11222     4577778999999999999943

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.52  E-value=4.9e-14  Score=106.78  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=80.9

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC--CCeEEEEEehHHHhhchhhc---C----------
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSIS---G----------  145 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~--~g~lvGiVt~~Dll~~~~~~---~----------  145 (203)
                      ..++|+|+|++  +++++++++++.+|+++|.+++++++||+|+  ++.++|+++..|++++....   .          
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~   86 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLT   86 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCB
T ss_pred             cceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccc
Confidence            47899999998  9999999999999999999999999999984  47899999999998753220   0          


Q ss_pred             ---------------CCccccCccCCccc---------hHHHH-----hhhceeeCCcEEEEEehhhHHHHH
Q 028824          146 ---------------SGRADNSMFPEVDS---------TWKVC-----EKCLSFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       146 ---------------~~~v~~~m~~~v~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L  188 (203)
                                     ...+.++|.+.+..         ..+.|     .+++|.++|+++|+||++|+++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          87 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             HHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             cchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHHHh
Confidence                           01133345443321         12222     557888899999999999996654

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.52  E-value=6.8e-15  Score=108.50  Aligned_cols=103  Identities=19%  Similarity=0.216  Sum_probs=64.7

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCccc---
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS---  159 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~~---  159 (203)
                      ++|+++|++  +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+|++....   ...+.++|.+++..   
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~---~~~~~~~~~~~~~~v~~   75 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPD---EEQLAMLVKRDVPVVKE   75 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-------------CCCBSCCCEEET
T ss_pred             CCcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhc---ccchhhccccceeecch
Confidence            478999999  8999999999999999999999999999999999999999999986532   34566677665431   


Q ss_pred             ------hHHHH-----hhhce-eeCCcEEEEEehhhHHHHHHHHhc
Q 028824          160 ------TWKVC-----EKCLS-FENYICLGSLSLKFLTFLLIFVNG  193 (203)
Q Consensus       160 ------~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~a~~~  193 (203)
                            ..+.+     ..+++ +++|+++|+||.+|+   ++++..
T Consensus        76 ~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~di---l~~~~~  118 (122)
T d2yzqa2          76 NDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDI---IRRYFA  118 (122)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH---HHHTTT
T ss_pred             hhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHH---HHHHHh
Confidence                  12222     33554 578999999999999   665543

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.49  E-value=6e-14  Score=104.18  Aligned_cols=102  Identities=24%  Similarity=0.193  Sum_probs=82.4

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHC-----CCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc
Q 028824           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (203)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~-----~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~  158 (203)
                      +++.+|++  +++++++++|+.+|++.|.++     +++.+||+|++|+++|+++.++++...   ....+.++|.+++.
T Consensus         2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~---~~~~v~~im~~~~~   76 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND---DDTLIADILNERVI   76 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC---TTSBHHHHSBSCCC
T ss_pred             ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccccc---ccEEhhhhccCCCc
Confidence            57899999  999999999999999999887     478999999999999999999998643   34578888887654


Q ss_pred             c---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHHHH
Q 028824          159 S---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       159 ~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~a  190 (203)
                      .         ..+.|     ..++|. ++|+++|+||.+|++++++.
T Consensus        77 ~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          77 SVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            2         12222     456655 68999999999999776653

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.48  E-value=4e-14  Score=105.89  Aligned_cols=106  Identities=20%  Similarity=0.287  Sum_probs=83.0

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh---------cCCCccccCc
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---------SGSGRADNSM  153 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~---------~~~~~v~~~m  153 (203)
                      ++|+++|++  ++.++++++++.+|++.|.+++++++||+|++++++|+++..|+++....         .....+.++|
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im   79 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVM   79 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHS
T ss_pred             EeeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHHh
Confidence            579999999  89999999999999999999999999999999999999999999865321         1233566777


Q ss_pred             cCCccc---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHHHH
Q 028824          154 FPEVDS---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       154 ~~~v~~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~a  190 (203)
                      .+++..         ..+.+     ..+++. ++|+++|+||.+|++..+..
T Consensus        80 ~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          80 VTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             BCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             CcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHH
Confidence            665431         12222     335554 68999999999999665554

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.46  E-value=1.7e-13  Score=101.22  Aligned_cols=97  Identities=19%  Similarity=0.326  Sum_probs=70.6

Q ss_pred             cccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC--CCeEEEEEehHHHhhchhhcCCCccccCccCCcc--------
Q 028824           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD--------  158 (203)
Q Consensus        89 M~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~--~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~--------  158 (203)
                      |..  +++++++++++.+|+++|.+++++++||+|+  +|+++|+||.+||.++.... ......++.....        
T Consensus         3 mi~--dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~-~~~~~~~~~~~~~~~~~~~~l   79 (126)
T d1zfja4           3 VII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYN-APISEHMTSEHLVTAAVGTDL   79 (126)
T ss_dssp             TSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSS-SBTTTSCCCSCCCCEETTCCH
T ss_pred             CEe--CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccC-CceeeeeeccceeecCCCCCH
Confidence            555  7889999999999999999999999999986  68999999999998764321 1222233333221        


Q ss_pred             -chHHHH-----hhhcee-eCCcEEEEEehhhHHHHH
Q 028824          159 -STWKVC-----EKCLSF-ENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       159 -~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L  188 (203)
                       .+++.+     ..+++. ++|+++|+||..|+++.+
T Consensus        80 ~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          80 ETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI  116 (126)
T ss_dssp             HHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHh
Confidence             122222     335554 689999999999995543

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=4.1e-14  Score=107.28  Aligned_cols=102  Identities=25%  Similarity=0.254  Sum_probs=81.4

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHCC-----CcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc
Q 028824           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (203)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~-----~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~  158 (203)
                      +++.+|++  +++++++++|+.+|++.|.+++     +..+||+|++|+++|+|+.+|+....   ....+.++|.+++.
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~---~~~~v~~im~~~~~   76 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD---PRTRVAEIMNPKVV   76 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSC---TTCBSTTTSBSSCC
T ss_pred             CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcc---cccchHHhcccCCc
Confidence            68899999  9999999999999999998774     78999999999999999999998643   34567777776543


Q ss_pred             c---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHHHH
Q 028824          159 S---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       159 ~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~a  190 (203)
                      .         +.+.|     ..+++. ++|+++|+||.+|+++++..
T Consensus        77 ~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          77 YVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             CEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHH
T ss_pred             cCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHH
Confidence            1         22223     345555 56999999999999777754

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.44  E-value=1.9e-13  Score=101.13  Aligned_cols=107  Identities=16%  Similarity=0.111  Sum_probs=77.6

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEE--eCCCeEEEEEehHHHhhchhhcC-CCccccCccCCcc-
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISG-SGRADNSMFPEVD-  158 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVv--d~~g~lvGiVt~~Dll~~~~~~~-~~~v~~~m~~~v~-  158 (203)
                      ++|+|+|++  +++++++++++.||++.|.+++++++||+  |++++++|+++..|+.++..... .......+..... 
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~~   78 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPIT   78 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCCE
T ss_pred             CCHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccccccccccccccccee
Confidence            479999998  99999999999999999999999999999  45689999999999997643321 1122222222211 


Q ss_pred             -----c---hHHHH-----hhhce-eeCCcEEEEEehhhHHHHHHHH
Q 028824          159 -----S---TWKVC-----EKCLS-FENYICLGSLSLKFLTFLLIFV  191 (203)
Q Consensus       159 -----~---~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~a~  191 (203)
                           .   ..+.+     .++++ +++|+++|+||..|++..+...
T Consensus        79 v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~~l  125 (131)
T d2riha1          79 VLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAIL  125 (131)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHHH
T ss_pred             EeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence                 1   12222     34555 5789999999999996554443

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.2e-13  Score=103.01  Aligned_cols=109  Identities=21%  Similarity=0.246  Sum_probs=78.4

Q ss_pred             ccccccccccCCC----eEEEcCCCCHHHHHHHHHHCCCcEEEEE--eCCCeEEEEEehHHHhhchhhc----C------
Q 028824           82 VYTVGDFMTTKEE----LHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSIS----G------  145 (203)
Q Consensus        82 ~~~V~diM~~~~~----~~~v~~~~ti~ea~~~m~~~~~~~lPVv--d~~g~lvGiVt~~Dll~~~~~~----~------  145 (203)
                      .+.++|+|.++..    .+.+.+++|++||.++|.+++++++||+  +++|+++|+||.+||+.+....    .      
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~   81 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   81 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence            3568899987432    2446788899999999999999999999  4568999999999999754210    0      


Q ss_pred             -----------------CCccccCccCCccc---------hHHHH-----hhhceeeCCcEEEEEehhhHHHHHHH
Q 028824          146 -----------------SGRADNSMFPEVDS---------TWKVC-----EKCLSFENYICLGSLSLKFLTFLLIF  190 (203)
Q Consensus       146 -----------------~~~v~~~m~~~v~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~~~L~a  190 (203)
                                       ...+.++|.+++..         ..+.|     ..++|.++|+++|+||++|++..+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          82 IIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             EEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             hhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEECCEEEEEEEHHHHHHHHHH
Confidence                             11245666665431         12222     45778899999999999999555544

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=1.8e-12  Score=97.02  Aligned_cols=104  Identities=22%  Similarity=0.303  Sum_probs=75.1

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc--C----------------
Q 028824           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--G----------------  145 (203)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~--~----------------  145 (203)
                      .+.++|++  +++++.+++++.+|++.|.+++++++||+|++|+++|+||.+||++.....  .                
T Consensus         5 ~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (145)
T d1o50a3           5 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI   82 (145)
T ss_dssp             HHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred             EhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhcc
Confidence            46778998  899999999999999999999999999999999999999999998753210  0                


Q ss_pred             CCccccCccCCc--------cchHHHH-----hhhce-eeCCcEEEEEehhhHHHHHH
Q 028824          146 SGRADNSMFPEV--------DSTWKVC-----EKCLS-FENYICLGSLSLKFLTFLLI  189 (203)
Q Consensus       146 ~~~v~~~m~~~v--------~~~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~  189 (203)
                      ...+..+|...+        ..+.+.+     ..+++ +++|+++|+||..|++..+.
T Consensus        83 ~~~~~~~~~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~  140 (145)
T d1o50a3          83 AKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW  140 (145)
T ss_dssp             SCBHHHHCBCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ccCHHHHcCCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence            001112222111        1122222     33555 57899999999999955554

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.34  E-value=1.6e-12  Score=96.38  Aligned_cols=104  Identities=15%  Similarity=0.147  Sum_probs=79.8

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-------------CCCcc
Q 028824           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------GSGRA  149 (203)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-------------~~~~v  149 (203)
                      ++|+++|++  +++++.+++++.+|++.|.+++++++||+|  ++++|+++..|+++.....             ....+
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d--~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   76 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPI   76 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEES--SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBG
T ss_pred             CEeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEe--cceeceeeccchhhhhccccccchhhhhccccccCCH
Confidence            479999999  899999999999999999999999999997  4799999999999764321             12356


Q ss_pred             ccCccCCccc---------hHHHH-----hhhce-eeCCcEEEEEehhhHHHHHHHHhc
Q 028824          150 DNSMFPEVDS---------TWKVC-----EKCLS-FENYICLGSLSLKFLTFLLIFVNG  193 (203)
Q Consensus       150 ~~~m~~~v~~---------~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~a~~~  193 (203)
                      +++|..++..         +.+.+     ..+++ +++|+++|+||.+|+   ++.+..
T Consensus        77 ~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Di---l~~~~~  132 (135)
T d3ddja2          77 IDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREF---LLLYKD  132 (135)
T ss_dssp             GGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH---GGGGGG
T ss_pred             HHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHH---HHHHHH
Confidence            7777665432         12222     33555 468999999999999   555443

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=3.4e-12  Score=95.40  Aligned_cols=99  Identities=19%  Similarity=0.275  Sum_probs=69.5

Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCC----ccc------cCccCCc
Q 028824           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG----RAD------NSMFPEV  157 (203)
Q Consensus        88 iM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~----~v~------~~m~~~v  157 (203)
                      +|.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++........    ...      ..+..+.
T Consensus        14 ~~~~--~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (140)
T d2nyca1          14 ITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGV   91 (140)
T ss_dssp             CBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC------
T ss_pred             ccCC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhhhhhhccccc
Confidence            4655  899999999999999999999999999999999999999999999764332111    111      1111111


Q ss_pred             ------c---chHHHH-----hhhce-eeCCcEEEEEehhhHHHHH
Q 028824          158 ------D---STWKVC-----EKCLS-FENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       158 ------~---~~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L  188 (203)
                            .   ...+.+     ..+++ +++|+++|+||.+|+++++
T Consensus        92 ~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          92 YTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence                  1   122222     23444 5799999999999995554

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=8.2e-12  Score=94.75  Aligned_cols=112  Identities=17%  Similarity=0.105  Sum_probs=79.7

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC-CCeEEEEEehHHHhhchhhc----CC-C------
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSIS----GS-G------  147 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~-~g~lvGiVt~~Dll~~~~~~----~~-~------  147 (203)
                      +...++.|+|....++++++.++++.+|++.|.+++++++||+|+ +++++|+|+..|++......    .. .      
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~   89 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEH   89 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGC
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhh
Confidence            456799999976546899999999999999999999999999975 68999999999998653220    00 0      


Q ss_pred             -------ccccCccCCcc---------chHHHH-----hhhcee--eCCcEEEEEehhhHHHHHHHH
Q 028824          148 -------RADNSMFPEVD---------STWKVC-----EKCLSF--ENYICLGSLSLKFLTFLLIFV  191 (203)
Q Consensus       148 -------~v~~~m~~~v~---------~~~~~~-----~~llv~--~~g~lvGiVt~~DI~~~L~a~  191 (203)
                             .....|...+.         .....+     .++++.  ++|+++|+||.+||++.|...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~  156 (159)
T d2v8qe2          90 KIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF  156 (159)
T ss_dssp             BHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred             hcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHH
Confidence                   11233333221         122222     334554  468999999999997776543

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.30  E-value=5.1e-12  Score=95.89  Aligned_cols=105  Identities=19%  Similarity=0.275  Sum_probs=73.4

Q ss_pred             cccccccc-CCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC----CCccccCc-----
Q 028824           84 TVGDFMTT-KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----SGRADNSM-----  153 (203)
Q Consensus        84 ~V~diM~~-~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~----~~~v~~~m-----  153 (203)
                      ++++++.. ..+++++.+++++.+|++.|.+++++++||+|++|+++|+||.+||++......    ...+.+.|     
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~   81 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPA   81 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCC
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeec
Confidence            45566542 237999999999999999999999999999999999999999999987643221    11222222     


Q ss_pred             -cCCc------c---chHHHH-----hhhc-eeeCCcEEEEEehhhHHHHH
Q 028824          154 -FPEV------D---STWKVC-----EKCL-SFENYICLGSLSLKFLTFLL  188 (203)
Q Consensus       154 -~~~v------~---~~~~~~-----~~ll-v~~~g~lvGiVt~~DI~~~L  188 (203)
                       ....      .   ...+.+     .+++ ++++|+++|+||..|++.++
T Consensus        82 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~  132 (153)
T d2ooxe2          82 NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYI  132 (153)
T ss_dssp             CSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             ccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHH
Confidence             1111      1   122223     3344 45789999999999995544

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=8.8e-12  Score=93.41  Aligned_cols=107  Identities=21%  Similarity=0.304  Sum_probs=74.8

Q ss_pred             cccccccc-CCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCC----c------cccC
Q 028824           84 TVGDFMTT-KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG----R------ADNS  152 (203)
Q Consensus        84 ~V~diM~~-~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~----~------v~~~  152 (203)
                      ++++++.. ..+++++.+++++.||++.|.+++++++||+|++|+++|+||..|+++........    .      ....
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~   89 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSH   89 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCS
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhhh
Confidence            55555331 12789999999999999999999999999999999999999999999765432211    1      1122


Q ss_pred             ccCCcc------ch---HHHH-----hhhce-eeCCcEEEEEehhhHHHHHHHHhc
Q 028824          153 MFPEVD------ST---WKVC-----EKCLS-FENYICLGSLSLKFLTFLLIFVNG  193 (203)
Q Consensus       153 m~~~v~------~~---~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~a~~~  193 (203)
                      |..+..      ..   .+.+     .++++ +++|+++|+||..|+   ++++..
T Consensus        90 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~di---i~~lv~  142 (145)
T d2v8qe1          90 YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDI---LQALVL  142 (145)
T ss_dssp             CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHH---HHHHHS
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHH---HHHHHh
Confidence            222221      11   2222     33555 478999999999999   555544

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.27  E-value=2.4e-12  Score=95.33  Aligned_cols=72  Identities=15%  Similarity=0.251  Sum_probs=66.9

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.+...++.......+++++|++  +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+||+++.
T Consensus        50 ~G~v~~~~l~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          50 VGVISLRDLIVNDDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             EEEEEHHHHTTSCTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             EEEEEeeccccccccEEhhhhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            688888888777778899999998  899999999999999999999999999999999999999999999764

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.26  E-value=1.6e-13  Score=100.89  Aligned_cols=95  Identities=20%  Similarity=0.228  Sum_probs=36.1

Q ss_pred             cccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccC--Ccc-----
Q 028824           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFP--EVD-----  158 (203)
Q Consensus        89 M~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~--~v~-----  158 (203)
                      |.+  +++++.+++++.||+++|.+++++++||+|+   +|+++|+||.+|+...............|..  ++.     
T Consensus         2 m~~--~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (120)
T d1jr1a4           2 FIT--DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAG   79 (120)
T ss_dssp             EEC--TTCC----CCCC--CCBC---------------CTTCCC----------------------CCSBTTTSCCEETT
T ss_pred             ccc--CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECCC
Confidence            555  7889999999999999999999999999985   6799999999999754433223333333322  221     


Q ss_pred             ----chHHHH-----hhhce-eeCCcEEEEEehhhHH
Q 028824          159 ----STWKVC-----EKCLS-FENYICLGSLSLKFLT  185 (203)
Q Consensus       159 ----~~~~~~-----~~llv-~~~g~lvGiVt~~DI~  185 (203)
                          .+.+.+     .++++ +++|+++|+||..|++
T Consensus        80 ~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~  116 (120)
T d1jr1a4          80 ITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLK  116 (120)
T ss_dssp             CCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHH
T ss_pred             CCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhh
Confidence                122222     34554 4689999999999994

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=1.8e-11  Score=92.31  Aligned_cols=72  Identities=24%  Similarity=0.391  Sum_probs=67.3

Q ss_pred             cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      -|.+..+++.......++.++|++  ++.++++++++.+|++.|.+++++.+||+|++|+++|+||.+||+++.
T Consensus        50 ~G~v~~~dl~~~~~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l  121 (144)
T d2yvxa2          50 KGVLSLRDLIVADPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  121 (144)
T ss_dssp             CCBCBHHHHTTSCTTCBSTTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHH
T ss_pred             ecccchhhhhhcccccchHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHH
Confidence            788888998777788899999999  899999999999999999999999999999999999999999999764

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.14  E-value=4.7e-11  Score=92.15  Aligned_cols=61  Identities=26%  Similarity=0.280  Sum_probs=54.2

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC-CCeEEEEEehHHHhhc
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLAL  140 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~-~g~lvGiVt~~Dll~~  140 (203)
                      +...++.|+|.+..++++++++.++.+|++.|.+++++++||+|+ +++++|+||..|+++.
T Consensus        17 l~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~   78 (179)
T d2ooxe1          17 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNV   78 (179)
T ss_dssp             HHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHH
T ss_pred             HcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHH
Confidence            356689999975447999999999999999999999999999994 5899999999999865

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=5.5e-11  Score=87.02  Aligned_cols=85  Identities=18%  Similarity=0.210  Sum_probs=64.7

Q ss_pred             ccccccccccCCccccccceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEE
Q 028824           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (203)
Q Consensus        51 ~~~~~~~~~r~~~~~~~~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvG  130 (203)
                      .+..|+...   -..+ .|.++.+++........++++|.+  +++++++++++.++++.|.++++..+||+|++|+++|
T Consensus        32 ~~~~~Vvd~---~~~~-~G~it~~dl~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liG  105 (122)
T d2yzqa2          32 VRSFPVVNK---EGKL-VGIISVKRILVNPDEEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVG  105 (122)
T ss_dssp             CCEEEEECT---TCCE-EEEEESSCC----------CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEE
T ss_pred             CcEEEEEec---cccc-hhhhhcchhhhhhcccchhhcccc--ceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEE
Confidence            355556533   2234 899999998777888899999998  8999999999999999999999999999999999999


Q ss_pred             EEehHHHhhch
Q 028824          131 LVSDYDLLALD  141 (203)
Q Consensus       131 iVt~~Dll~~~  141 (203)
                      +||.+||+++.
T Consensus       106 iit~~dil~~~  116 (122)
T d2yzqa2         106 ILTVGDIIRRY  116 (122)
T ss_dssp             EEEHHHHHHHT
T ss_pred             EEEHHHHHHHH
Confidence            99999999753

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=1.8e-10  Score=83.98  Aligned_cols=86  Identities=21%  Similarity=0.203  Sum_probs=73.6

Q ss_pred             ccccccccccCCccccccceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEE
Q 028824           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (203)
Q Consensus        51 ~~~~~~~~~r~~~~~~~~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvG  130 (203)
                      ++..++....   ... .|.++..++.......++.++|+.  ++.++++++++.++++.|.++++..+||+|++|+++|
T Consensus        32 ~~~v~Vvd~~---~~~-~Gii~~~dl~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~G  105 (121)
T d1vr9a3          32 TNECIVKDRE---GHF-RGVVNKEDLLDLDLDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKG  105 (121)
T ss_dssp             SSEEEEECTT---SBE-EEEEEGGGGTTSCTTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEE
T ss_pred             cEEEEEEeCC---cee-EEEeehhhhhhhhccccccccccC--ccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEE
Confidence            3445554322   234 899999999777778899999998  8999999999999999999999999999999999999


Q ss_pred             EEehHHHhhchh
Q 028824          131 LVSDYDLLALDS  142 (203)
Q Consensus       131 iVt~~Dll~~~~  142 (203)
                      +||..|++++..
T Consensus       106 vit~~dil~~l~  117 (121)
T d1vr9a3         106 AVSLHDFLEALI  117 (121)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             EEEHHHHHHHHH
Confidence            999999998643

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.03  E-value=1.9e-10  Score=84.83  Aligned_cols=60  Identities=28%  Similarity=0.391  Sum_probs=56.3

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      ...+++++|++  ++.++++++++.+|++.|.+++++++||+|++|+++|+||.+|++++..
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             ccCCHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            46789999999  9999999999999999999999999999999999999999999998754

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.02  E-value=8.2e-11  Score=85.98  Aligned_cols=90  Identities=20%  Similarity=0.292  Sum_probs=48.0

Q ss_pred             cccccccccccCCccccccceEeccccc---CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCC
Q 028824           50 ATSSDRVSALRRSSAVFASGTLTANSAA---PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW  126 (203)
Q Consensus        50 ~~~~~~~~~~r~~~~~~~~g~~~~~~l~---~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g  126 (203)
                      .+++.||...-...... -|.++.+++.   .......+.++|....+++++.+++++.+|+++|.+++++.+||+|++|
T Consensus        26 ~i~~~pVvd~~~~~~~l-vGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~  104 (120)
T d1jr1a4          26 GFCGIPITDTGRMGSRL-VGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEND  104 (120)
T ss_dssp             ------------CTTCC-C----------------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTT
T ss_pred             CCCeEEEeeccccCCeE-eeeeeeeeeeehhccccCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCC
Confidence            45666666421122233 6888877662   2333456777776655789999999999999999999999999999999


Q ss_pred             eEEEEEehHHHhhc
Q 028824          127 KLVGLVSDYDLLAL  140 (203)
Q Consensus       127 ~lvGiVt~~Dll~~  140 (203)
                      +++|+||.+||++.
T Consensus       105 ~lvGiiT~~Di~k~  118 (120)
T d1jr1a4         105 ELVAIIARTDLKKN  118 (120)
T ss_dssp             EEEEEECHHHHHHH
T ss_pred             EEEEEEEHHHhhhc
Confidence            99999999999874

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.01  E-value=2.3e-10  Score=86.24  Aligned_cols=62  Identities=31%  Similarity=0.441  Sum_probs=55.9

Q ss_pred             CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ......+++++|++  ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||+++.
T Consensus        94 ~~~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          94 LQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             ---CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             hcccCCEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence            44567799999998  899999999999999999999999999999999999999999999753

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.00  E-value=3.5e-10  Score=84.72  Aligned_cols=72  Identities=24%  Similarity=0.264  Sum_probs=63.0

Q ss_pred             cceEeccccc-------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAA-------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~-------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      -|.++..++.       ......+++++|++  +++++++++++.+|++.|.+++++.+||+|++|+++|+||..||+++
T Consensus        47 ~Giit~~di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~  124 (142)
T d1pvma4          47 VGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY  124 (142)
T ss_dssp             EEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTT
T ss_pred             cceEEeechhhhhhhhccccccccccccccc--ccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHH
Confidence            6777766651       23456789999998  89999999999999999999999999999999999999999999975


Q ss_pred             h
Q 028824          141 D  141 (203)
Q Consensus       141 ~  141 (203)
                      .
T Consensus       125 l  125 (142)
T d1pvma4         125 L  125 (142)
T ss_dssp             S
T ss_pred             H
Confidence            4

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.99  E-value=3.2e-10  Score=83.15  Aligned_cols=73  Identities=25%  Similarity=0.353  Sum_probs=65.0

Q ss_pred             cceEeccccc-----CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           68 SGTLTANSAA-----PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        68 ~g~~~~~~l~-----~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      -|.++.+++.     ......+++++|.+  ++.++.+++++.++++.|.+++++++||+|++|+++|+||..||+++..
T Consensus        47 ~Givt~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          47 VGIITERDIVKAIGKGKSLETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             EEEEEHHHHHHHHHTTCCTTCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             hhhcchhHHHHHHHhhccccchhhhhhhh--hccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence            6888877773     34566789999998  8999999999999999999999999999999999999999999998643

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.95  E-value=7.7e-10  Score=81.04  Aligned_cols=89  Identities=20%  Similarity=0.212  Sum_probs=66.8

Q ss_pred             cccccccccccCCccccccceEecccc-cCCCCccc-cccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCe
Q 028824           50 ATSSDRVSALRRSSAVFASGTLTANSA-APSSGVYT-VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK  127 (203)
Q Consensus        50 ~~~~~~~~~~r~~~~~~~~g~~~~~~l-~~~~~~~~-V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~  127 (203)
                      .+++.||..... .... .|.++.+++ ........ ...+|..  +++++.+++++.+|+++|.+++++.+||+|++|+
T Consensus        27 ~~~~~pVvD~~~-~~~l-vGivt~~Di~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~  102 (126)
T d1zfja4          27 RISGVPIVETLA-NRKL-VGIITNRDMRFISDYNAPISEHMTSE--HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGR  102 (126)
T ss_dssp             TCSEEEEESCTT-TCBE-EEEEEHHHHHHCSCSSSBTTTSCCCS--CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSB
T ss_pred             CCCcEEEEeecc-CCeE-EEEeEHHHHHHhhccCCceeeeeecc--ceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCe
Confidence            346666663211 1223 699999888 22233334 4444555  7889999999999999999999999999999999


Q ss_pred             EEEEEehHHHhhchh
Q 028824          128 LVGLVSDYDLLALDS  142 (203)
Q Consensus       128 lvGiVt~~Dll~~~~  142 (203)
                      ++|+||.+||+++..
T Consensus       103 lvGiiT~~Dil~~~~  117 (126)
T d1zfja4         103 LSGLITIKDIEKVIE  117 (126)
T ss_dssp             EEEEEEHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHhh
Confidence            999999999998643

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.93  E-value=7.6e-10  Score=80.41  Aligned_cols=70  Identities=24%  Similarity=0.341  Sum_probs=62.8

Q ss_pred             cceEeccccc------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAA------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      -|.++.+++.      ..+...+++++|++  ++.++++++++.+|++.|.++++..+||+| +|+++|+||..|++++
T Consensus        43 ~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          43 VGIVTTWDVLEAIAEGDDLAEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             EEEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             EEEEEeeeccccccccccccceeEeeeccc--ccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence            6888887773      34667899999998  899999999999999999999999999986 6899999999999975

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.92  E-value=8.3e-10  Score=80.99  Aligned_cols=71  Identities=28%  Similarity=0.404  Sum_probs=61.7

Q ss_pred             cceEeccccc-------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAA-------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~-------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      -|.++.+++.       ......+++++|++  ++.++.+++++.+|++.|.+++++++||+| +|+++|+||.+|++++
T Consensus        48 vGiit~~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          48 VGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKD  124 (127)
T ss_dssp             EEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             EEEEEccchhhhhhhhcccccceeEeeeccc--eeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHH
Confidence            7888877651       12345789999998  899999999999999999999999999998 6999999999999975


Q ss_pred             h
Q 028824          141 D  141 (203)
Q Consensus       141 ~  141 (203)
                      .
T Consensus       125 ~  125 (127)
T d2rc3a1         125 A  125 (127)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=1.1e-09  Score=79.88  Aligned_cols=70  Identities=24%  Similarity=0.468  Sum_probs=60.1

Q ss_pred             cceEeccccc-------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           68 SGTLTANSAA-------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        68 ~g~~~~~~l~-------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      -|.++.+++.       .......++++|++  ++.++++++++.+|++.|.+++++++||+| +|+++|+||..||++.
T Consensus        45 ~Giit~~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          45 HGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             EEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             hhhhhhhhHhhhhhhcCCCcccceEEEEeec--cceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence            7788766541       12345678999998  899999999999999999999999999998 5899999999999975

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.86  E-value=9.4e-10  Score=81.41  Aligned_cols=59  Identities=25%  Similarity=0.357  Sum_probs=55.3

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ...+++++|++  +++++.+++++.++++.|.+++++++||+|++|+++|+||.+||++..
T Consensus        71 ~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l  129 (141)
T d3ddja1          71 YGKVVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIAL  129 (141)
T ss_dssp             HTCBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             cCCCHHHHhCc--ccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHH
Confidence            46689999998  899999999999999999999999999999999999999999999764

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.81  E-value=6.3e-09  Score=76.59  Aligned_cols=72  Identities=25%  Similarity=0.287  Sum_probs=61.9

Q ss_pred             cceEecccc------cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSA------APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l------~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      .|.++..++      .......+++++|.+  ++.++.+++++.++++.|.+++++.+||++ +|+++|+||..|++++.
T Consensus        49 ~Giit~~di~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~  125 (132)
T d2yzia1          49 VGFFTKSDIIRRVIVPGLPYDIPVERIMTR--NLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEAS  125 (132)
T ss_dssp             EEEEEHHHHHHHTTTTCCCTTSBGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             eeeeeHHHHHHHHhhccCccceeEeecccc--cccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            778876665      233456789999998  899999999999999999999999999876 69999999999999865


Q ss_pred             h
Q 028824          142 S  142 (203)
Q Consensus       142 ~  142 (203)
                      .
T Consensus       126 ~  126 (132)
T d2yzia1         126 R  126 (132)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.80  E-value=2.9e-09  Score=79.09  Aligned_cols=59  Identities=22%  Similarity=0.372  Sum_probs=53.9

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ....+++++|++  ++.++++++++.+|++.|.+++++.+||+| +|+++|+||..||+++.
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~  130 (139)
T d2o16a3          72 AFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIA  130 (139)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHH
T ss_pred             ccccchhHhhcc--ccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            345689999998  899999999999999999999999999998 58999999999999764

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.78  E-value=3.8e-09  Score=79.08  Aligned_cols=60  Identities=15%  Similarity=0.003  Sum_probs=53.7

Q ss_pred             CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ......++++|.+  .++++.+++++.+++++|.+++++++||+| +|+++|+||.+||+++.
T Consensus        99 ~~~~~~~~~~~~~--~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          99 NVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             TCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ccccceeeecccC--CCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHh
Confidence            3445567889998  899999999999999999999999999998 69999999999999864

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.76  E-value=7.5e-09  Score=75.63  Aligned_cols=72  Identities=18%  Similarity=0.111  Sum_probs=58.4

Q ss_pred             cceEeccccc----CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824           68 SGTLTANSAA----PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        68 ~g~~~~~~l~----~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      -|.++..++.    ...........|..  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..||+++.
T Consensus        47 iGi~~~~dl~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          47 VAVVSERDILRAVAQRLDLDGPAMPIAN--SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             EEEEEHHHHHHHHHTTCCTTSBSGGGCB--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             EEEEeeeccccccccccccccccccccc--cceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            5777766662    23333344555655  688999999999999999999999999999999999999999999763

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=7.5e-09  Score=79.02  Aligned_cols=61  Identities=13%  Similarity=0.215  Sum_probs=54.9

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~  143 (203)
                      ....+++++|.+  ++.++.+++++.+++++|.+++.+.+||+| +|+++|+||.+||+++...
T Consensus        97 ~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          97 PPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            345679999998  899999999999999999999999999987 6899999999999987543

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=8.5e-09  Score=76.42  Aligned_cols=60  Identities=22%  Similarity=0.345  Sum_probs=53.4

Q ss_pred             CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      .....++++|..   ++++.+++++.+|++.|.+++++++||+|++|+++|+||..||+++..
T Consensus        81 ~~~~~~~~~~~~---~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~  140 (145)
T d1o50a3          81 LIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW  140 (145)
T ss_dssp             CSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ccccCHHHHcCC---CEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence            455667888864   788999999999999999999999999999999999999999998754

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=1.6e-08  Score=75.03  Aligned_cols=73  Identities=15%  Similarity=0.096  Sum_probs=58.4

Q ss_pred             cceEecccccCCCC-------cc------ccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEeh
Q 028824           68 SGTLTANSAAPSSG-------VY------TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSD  134 (203)
Q Consensus        68 ~g~~~~~~l~~~~~-------~~------~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~  134 (203)
                      .|.++..++.....       ..      .+...|..  ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.
T Consensus        56 ~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~  133 (145)
T d2v8qe1          56 VDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSL  133 (145)
T ss_dssp             EEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--SCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred             EEEEEcchhhhhhhcccccchhhhhhhccchhhhccC--CCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEH
Confidence            57777777632221       12      33344666  78899999999999999999999999999999999999999


Q ss_pred             HHHhhchh
Q 028824          135 YDLLALDS  142 (203)
Q Consensus       135 ~Dll~~~~  142 (203)
                      +||+++..
T Consensus       134 ~dii~~lv  141 (145)
T d2v8qe1         134 SDILQALV  141 (145)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.67  E-value=7.5e-09  Score=76.01  Aligned_cols=84  Identities=13%  Similarity=0.106  Sum_probs=65.0

Q ss_pred             cccccccccccCCccccccceEeccccc-----------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcE
Q 028824           50 ATSSDRVSALRRSSAVFASGTLTANSAA-----------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG  118 (203)
Q Consensus        50 ~~~~~~~~~~r~~~~~~~~g~~~~~~l~-----------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~  118 (203)
                      +.+..|+...-   ... .|.++..++.           ......+++++|++  ++.++.+++++.++++.|.+++  .
T Consensus        34 ~~s~~pVvd~~---~~~-vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~--~  105 (132)
T d1yava3          34 GYTAIPVLDPS---YRL-HGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNG--F  105 (132)
T ss_dssp             CCSEEEEECTT---CBE-EEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCS--E
T ss_pred             CCCceEEeecc---ccc-ccEEEcchhHHHhhccccccccccccccccccccc--cccccccchhHHHHHHHHHhCC--E
Confidence            44556665431   223 6777665552           23456789999998  8999999999999999998765  4


Q ss_pred             EEEEeCCCeEEEEEehHHHhhch
Q 028824          119 FPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus       119 lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      +||+|++|+++|+||.+|++++.
T Consensus       106 l~Vvd~~~~~~Givt~~dil~~l  128 (132)
T d1yava3         106 VCVENDEQVFEGIFTRRVVLKEL  128 (132)
T ss_dssp             EEEECTTCBEEEEEEHHHHHHHH
T ss_pred             EEEEccCCEEEEEEEHHHHHHHH
Confidence            99999999999999999999764

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.60  E-value=3.3e-08  Score=74.23  Aligned_cols=89  Identities=18%  Similarity=0.274  Sum_probs=66.7

Q ss_pred             cccccccccccCCccccccceEecccccC-------CCCccccccccccC----CCeEEEcCCCCHHHHHHHHHHCCCcE
Q 028824           50 ATSSDRVSALRRSSAVFASGTLTANSAAP-------SSGVYTVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITG  118 (203)
Q Consensus        50 ~~~~~~~~~~r~~~~~~~~g~~~~~~l~~-------~~~~~~V~diM~~~----~~~~~v~~~~ti~ea~~~m~~~~~~~  118 (203)
                      ..+..|+....   ... .|.++..++..       .....++.++|...    .++.++.+++++.++++.|.+++++.
T Consensus        34 ~~~~lpVvd~~---~~~-vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~  109 (153)
T d2ooxe2          34 NISAVPIVNSE---GTL-LNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHR  109 (153)
T ss_dssp             TCSEEEEECGG---GBE-EEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSE
T ss_pred             CcceEeeeccc---ceE-EEEEEeeeeeehhccccccccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeE
Confidence            34556666542   223 68888777621       12345677776532    15678999999999999999999999


Q ss_pred             EEEEeCCCeEEEEEehHHHhhchh
Q 028824          119 FPVIDDDWKLVGLVSDYDLLALDS  142 (203)
Q Consensus       119 lPVvd~~g~lvGiVt~~Dll~~~~  142 (203)
                      +||+|++|+++|+||..|++++..
T Consensus       110 l~Vvd~~~~lvGivT~~Dil~~~~  133 (153)
T d2ooxe2         110 LFVVDENLKLEGILSLADILNYII  133 (153)
T ss_dssp             EEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             EEEEcCCCEEEEEEEHHHHHHHHH
Confidence            999999999999999999998643

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=4e-08  Score=72.57  Aligned_cols=87  Identities=17%  Similarity=0.134  Sum_probs=59.5

Q ss_pred             ccccccccccccCCccccccceEeccccc-------CCCCccccc------cccccCCCeEEEcCCCCHHHHHHHHHHCC
Q 028824           49 LATSSDRVSALRRSSAVFASGTLTANSAA-------PSSGVYTVG------DFMTTKEELHVVKPTTTVDEALEILVEKR  115 (203)
Q Consensus        49 ~~~~~~~~~~~r~~~~~~~~g~~~~~~l~-------~~~~~~~V~------diM~~~~~~~~v~~~~ti~ea~~~m~~~~  115 (203)
                      ...++.|+....+   .. -|.++..++.       .......+.      ..|..  +++++.+++++.++++.|.+++
T Consensus        38 ~~~~~ipVvd~~~---~~-vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~  111 (140)
T d2nyca1          38 GRVSSVPIIDENG---YL-INVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFE--GVYTCTKNDKLSTIMDNIRKAR  111 (140)
T ss_dssp             HTCSEEEEECTTC---BE-EEEEEHHHHHHHHHTC----CCSBHHHHHHHCC--------CEECTTSBHHHHHHHHHHHT
T ss_pred             cCCcEEEEEecCC---eE-cceehhhHHHHHHhhccccccccchhhhhhhhhhccc--ccEEECCCCcHHHHHHHHHhcC
Confidence            3455566664322   23 6778776651       111112223      33444  6789999999999999999999


Q ss_pred             CcEEEEEeCCCeEEEEEehHHHhhch
Q 028824          116 ITGFPVIDDDWKLVGLVSDYDLLALD  141 (203)
Q Consensus       116 ~~~lPVvd~~g~lvGiVt~~Dll~~~  141 (203)
                      ++.+||+|++|+++|+||.+||+++.
T Consensus       112 ~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1         112 VHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             CSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             eeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            99999999999999999999999763

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.50  E-value=3.6e-08  Score=74.03  Aligned_cols=55  Identities=18%  Similarity=0.276  Sum_probs=50.0

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEe-CCCeEEEEEehHHHhhch
Q 028824           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALD  141 (203)
Q Consensus        85 V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd-~~g~lvGiVt~~Dll~~~  141 (203)
                      +.++|.+  +++++++++++.++++.|.+++++++||+| ++|+++|+||.+||+++.
T Consensus        98 ~~~~~~~--~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          98 YLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             HSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             eeeeecc--ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            3568887  899999999999999999999999999998 468999999999999865

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.35  E-value=2.3e-07  Score=70.77  Aligned_cols=56  Identities=23%  Similarity=0.314  Sum_probs=49.6

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCC-----eEEEEEehHHHhhchh
Q 028824           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-----KLVGLVSDYDLLALDS  142 (203)
Q Consensus        85 V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g-----~lvGiVt~~Dll~~~~  142 (203)
                      +.++|.+  +++++.+++++.+|++.|.+++++++||+|++|     +++|+||.+||++...
T Consensus       109 ~~~~~~~--~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1         109 KIGAIPP--ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             HTTCSCS--SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             eeeeccc--CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence            4456877  899999999999999999999999999998654     6999999999998653

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=85.69  E-value=0.0025  Score=48.81  Aligned_cols=58  Identities=12%  Similarity=0.096  Sum_probs=51.6

Q ss_pred             CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (203)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~  140 (203)
                      ....++++|..  .+.++..+++-+++.++|........||++++++++|.|+..|+..+
T Consensus       135 ~~~~l~~i~~~--~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A  192 (213)
T d1lkvx_         135 IQLVLREVDTR--DLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEA  192 (213)
T ss_dssp             HHHHHTTSCHH--HHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred             HhHHHHHhhhh--hheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHH
Confidence            44567888887  78889999999999999999999999999999999999999998654