Citrus Sinensis ID: 028854

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPNSESQLRRRTYHSQPVEHSN
Secondary Structure (PSIPRED)
cccccccccccEEEEccccEEEEEEccEEEEEcccccccccccEEEEEEcccEEEEEEcccccccEEEccccccccccEEEccEEcccEEEEEEEEcccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEccccEEEEEEEccEEEEEccccccccEcccEEEEEEcEEEEEEcccccccccEEcccHHHcccccEcccEEcccEEEEEEEEcccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccccccEEEEEccccHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
malnpqlfpnwmpvpftnelFVLARdgvefhvdkipgtnqvkargTVYLSNIRVVFVaskpvgnfvafdmpllyihdekfnqpifhcnnisgfvepvipenehralystHSFKILfkeggcgtfvPLFLNLISSVRQynrqsnvgteprvdplqaaqtpvDEMMrhayvdpndptkiflqqpnsesqlrrrtyhsqpvehsn
Flexible Loop (DISEMBL)
malnpqlfpnwmpvPFTNELFVLARDGVEFhvdkipgtnqvkargtVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNRqsnvgteprvdplQAAQTPVDEMMRHAYVDPNDPTKIFlqqpnsesqlrrrtyhsqpvehsn
Low Complexity Region (SEG)
MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPNSESQLRRRTYHSQPVEHSN
Disordered region (IsUnstruct)
******LFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQY****************************************************************
Disordered Region (DISOPRED)
MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKI*****VKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPE****ALYSTHSFKILFKEGGCGTFVPLFLNLIS**********************************YVDPNDPTKIF************************
Disordered Region (DISEMBL)
MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQP********************
Disordered Region (DISPRO)
**LNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNRQSNV***********AQTPVDEMMRHAYVDPNDPTKIFLQQPNSES****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQPNSESQLRRRTYHSQPVEHSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
O14032	174	UPF0664 stress-induced pr	yes	no	0.638	0.741	0.297	2e-06
Q4R3M1	255	Postacrosomal sheath WW d	N/A	no	0.430	0.341	0.304	1e-05
P97765	261	WW domain-binding protein	yes	no	0.653	0.505	0.257	4e-05
Q969T9	261	WW domain-binding protein	yes	no	0.653	0.505	0.271	7e-05
Q9D529	359	Postacrosomal sheath WW d	no	no	0.440	0.247	0.312	0.0001
Q8R478	262	WW domain-binding protein	no	no	0.653	0.503	0.257	0.0001
A3KFF6	313	Postacrosomal sheath WW d	no	no	0.435	0.281	0.329	0.0002

>sp|O14032|YEMB_SCHPO UPF0664 stress-induced protein C29B12.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29B12.11c PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 9/138 (6%)

Query: 18  NELFVLARDGVEFHVDKIPGT--NQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYI 75
           NE      DGV   +   P +  +    +G + L+N R+V++A     +F  F  P+  +
Sbjct: 21  NECMFDCFDGVAISILCKPPSLKSWTCTKGLLCLTNQRLVYIAKDTDCDFKDFQSPVANL 80

Query: 76  HDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSV 135
            D K NQP F  N  SG V PV     +  +      K+ F EGG   FV  +  LI   
Sbjct: 81  KDTKLNQPFFGANYYSGTVMPV----PNGGIPCEAEVKLQFNEGGIFNFVEAWNRLIQRF 136

Query: 136 RQYNRQSNVGTEPRVDPL 153
           ++ +  S V     +DPL
Sbjct: 137 QEVDSVSRVQ---HLDPL 151

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4R3M1|WBP2L_MACFA Postacrosomal sheath WW domain-binding protein OS=Macaca fascicularis GN=WBP2NL PE=2 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 45  GTVYLSNIRVVFVASKPV-GNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEH 103
           GT++L++ RV+F+ S  + G  ++F MP   I +    QP+F  N    F++  I    +
Sbjct: 49  GTLFLTSYRVIFITSHSINGPMLSFMMPFDLITNLTVEQPVFAAN----FIKGTIQAAPY 104

Query: 104 RALYSTHSFKILFKEGGCGTFVPLFLNLISSV 135
                  +FK++F+ GG   F  L +   SSV
Sbjct: 105 GGWEGQATFKLVFRNGGAIEFAQLMVKAASSV 136

May play a role in meotic resumption and pronuclear formation, mediated by a WW domain-signaling pathway during fertilization.

Macaca fascicularis (taxid: 9541)

>sp|P97765|WBP2_MOUSE WW domain-binding protein 2 OS=Mus musculus GN=Wbp2 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 8/140 (5%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEF---HVDKIPGTNQVKARGTVYLSNIRVVFV 57
           MALN         +    E  +++ D VE     +  +P   +   +GTVYL+  RV+F+
Sbjct: 1   MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL 60

Query: 58  ASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFK 117
            SK      +F MP   + D +  QP+F  N    F++ ++          + S+K+ F 
Sbjct: 61  -SKGKDAMQSFMMPFYLMKDCEIKQPVFGAN----FIKGIVKAEAGGGWEGSASYKLTFT 115

Query: 118 EGGCGTFVPLFLNLISSVRQ 137
            GG   F    L + S   +
Sbjct: 116 AGGAIEFGQRMLQVASQASR 135

Mus musculus (taxid: 10090)

>sp|Q969T9|WBP2_HUMAN WW domain-binding protein 2 OS=Homo sapiens GN=WBP2 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEF---HVDKIPGTNQVKARGTVYLSNIRVVFV 57
           MALN         +    E  +++ D VE     +  +P   +   +GTVYL+  RV+F+
Sbjct: 1   MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL 60

Query: 58  ASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFK 117
            SK      +F MP   + D +  QP+F  N I G V+             + S+K+ F 
Sbjct: 61  -SKGKDAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVK----AEAGGGWEGSASYKLTFT 115

Query: 118 EGGCGTFVPLFLNLISSVRQ 137
            GG   F    L + S   +
Sbjct: 116 AGGAIEFGQRMLQVASQASR 135

Homo sapiens (taxid: 9606)

>sp|Q9D529|WBP2L_MOUSE Postacrosomal sheath WW domain-binding protein OS=Mus musculus GN=Wbp2nl PE=2 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 36  PGTNQVKA--RGTVYLSNIRVVFVASKPVGN-FVAFDMPLLYIHDEKFNQPIFHCNNISG 92
           PG+N      RG ++L++ RV+FV S+   +   +F MP   +++    QPIF  N I G
Sbjct: 38  PGSNLFSGTKRGALFLTSYRVIFVTSRADNDPMFSFTMPFHLMNNCTVEQPIFGANYIKG 97

Query: 93  FVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLF 128
            ++   P+        + +FKI+F++GG   F  L 
Sbjct: 98  TIQ-AAPDGGWEG---SATFKIVFRKGGAIDFAQLM 129

May play a role in meotic resumption and pronuclear formation, mediated by a WW domain-signaling pathway during fertilization.

Mus musculus (taxid: 10090)

>sp|Q8R478|WBP2_RAT WW domain-binding protein 2 OS=Rattus norvegicus GN=Wbp2 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEF---HVDKIPGTNQVKARGTVYLSNIRVVFV 57
           MALN         +    E  +++ D VE     +  +P   +   +GTVYL+  RV+F+
Sbjct: 1   MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL 60

Query: 58  ASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFK 117
            SK      +F MP   + D +  QP+F  N    F++  +          + S+K+ F 
Sbjct: 61  -SKGKDAMRSFMMPFYLMKDCEVKQPVFGAN----FIKGTVKAEAGGGWEGSASYKLTFT 115

Query: 118 EGGCGTFVPLFLNLISSVRQ 137
            GG   F    L + S   +
Sbjct: 116 AGGAIEFGQQMLQVASQASR 135

Rattus norvegicus (taxid: 10116)

>sp|A3KFF6|WBP2L_BOVIN Postacrosomal sheath WW domain-binding protein OS=Bos taurus GN=WBP2NL PE=2 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 44  RGTVYLSNIRVVFVASKPVGN-FVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPEN- 101
           +GT++L++ RVVFV S  V +  ++F MP   + D    QPIF  N I G ++   P   
Sbjct: 48  KGTLFLTSYRVVFVTSHLVNDPMLSFMMPFGLMSDCTIEQPIFAPNYIKGTIQ-AAPGGG 106

Query: 102 -EHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQ 137
            E +A+     FK+ F++GG   F  L +   S+  +
Sbjct: 107 WEGQAV-----FKLSFRKGGAIEFAQLMVKAASAAAR 138

May play a role in meotic resumption and pronuclear formation, mediated by a WW domain-signaling pathway during fertilization.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
224072433	202	predicted protein [Populus trichocarpa]	0.995	0.995	0.800	2e-92
449446783	202	PREDICTED: uncharacterized protein LOC10	0.985	0.985	0.807	9e-92
297807207	207	hypothetical protein ARALYDRAFT_909134 [	0.990	0.966	0.801	3e-91
15239148	207	uncharacterized protein [Arabidopsis tha	0.990	0.966	0.801	5e-91
359473858	202	PREDICTED: uncharacterized protein LOC10	0.985	0.985	0.798	4e-89
351723305	206	uncharacterized protein LOC100500660 [Gl	0.970	0.951	0.785	1e-88
224057880	202	predicted protein [Populus trichocarpa]	0.995	0.995	0.771	4e-88
388512897	206	unknown [Medicago truncatula]	0.970	0.951	0.775	1e-87
125531097	206	hypothetical protein OsI_32701 [Oryza sa	0.965	0.946	0.79	1e-87
255543310	204	conserved hypothetical protein [Ricinus	0.995	0.985	0.758	4e-87

>gi|224072433|ref|XP_002303730.1| predicted protein [Populus trichocarpa] gi|222841162|gb|EEE78709.1| predicted protein [Populus trichocarpa]

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 161/201 (80%), Positives = 178/201 (88%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASK 60
           MALNPQL+ N M VPF NELFVLARDGVEF VDKIPG  +VKA+GT+YLSNIR+VFVAS+
Sbjct: 1   MALNPQLYANGMAVPFENELFVLARDGVEFEVDKIPGCGKVKAKGTIYLSNIRMVFVASQ 60

Query: 61  PVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGG 120
           PVGNF AFDMPLL+IH+EKFNQPIFHCNNISGFVEPV+PE E+RALYSTHSFKILFKEGG
Sbjct: 61  PVGNFYAFDMPLLFIHEEKFNQPIFHCNNISGFVEPVVPETENRALYSTHSFKILFKEGG 120

Query: 121 CGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQ 180
           CGTFVPLFLNLIS+VRQYN+Q N    P +DPLQAAQTPVDEMMRHAYVDPNDPT+IFLQ
Sbjct: 121 CGTFVPLFLNLISAVRQYNQQVNSAPRPSIDPLQAAQTPVDEMMRHAYVDPNDPTRIFLQ 180

Query: 181 QPNSESQLRRRTYHSQPVEHS 201
           QP  +S+LRRRTY     E +
Sbjct: 181 QPTPQSELRRRTYQPSSAERT 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446783|ref|XP_004141150.1| PREDICTED: uncharacterized protein LOC101208147 [Cucumis sativus] gi|449526734|ref|XP_004170368.1| PREDICTED: uncharacterized LOC101208147 [Cucumis sativus]

 Score =  341 bits (875), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 164/203 (80%), Positives = 181/203 (89%), Gaps = 4/203 (1%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTN--QVKARGTVYLSNIRVVFVA 58
           MALNP LFPN MPVPFTNELFVLARDGVEF +DKIPG N  +VKA+GT+YLSN+R+VFV+
Sbjct: 1   MALNPNLFPNGMPVPFTNELFVLARDGVEFEIDKIPGANSDRVKAKGTIYLSNVRMVFVS 60

Query: 59  SKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKE 118
           +KP   F AFDMPLLY+ DEKFNQPIF CNNISG VEPV+PE++HRALYSTHSFKILFKE
Sbjct: 61  NKPDPVFTAFDMPLLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKE 120

Query: 119 GGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIF 178
           GGCGTFVPLF NL+SSVRQYN+  N G  PRVDPLQAAQTPVDEMMRHAYVDPNDPTKIF
Sbjct: 121 GGCGTFVPLFFNLLSSVRQYNQHMNAG--PRVDPLQAAQTPVDEMMRHAYVDPNDPTKIF 178

Query: 179 LQQPNSESQLRRRTYHSQPVEHS 201
           LQQP +ESQLRRRTY SQP E++
Sbjct: 179 LQQPATESQLRRRTYQSQPAENA 201

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807207|ref|XP_002871487.1| hypothetical protein ARALYDRAFT_909134 [Arabidopsis lyrata subsp. lyrata] gi|297317324|gb|EFH47746.1| hypothetical protein ARALYDRAFT_909134 [Arabidopsis lyrata subsp. lyrata]

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 166/207 (80%), Positives = 178/207 (85%), Gaps = 7/207 (3%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTN--QVKARGTVYLSNIRVVFVA 58
           MALNPQL PN +P+PF NE+FVL RDGVEF VDKIPG +   VKA+G +YLSNIR+VFVA
Sbjct: 1   MALNPQLLPNGIPIPFVNEMFVLVRDGVEFEVDKIPGGHGGHVKAKGVIYLSNIRMVFVA 60

Query: 59  SKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKE 118
           SKPV NFVAFDMPLLYIH EKFNQPIFHCNNISG VEPV+PENEHRALYSTHSFKILFKE
Sbjct: 61  SKPVDNFVAFDMPLLYIHAEKFNQPIFHCNNISGQVEPVVPENEHRALYSTHSFKILFKE 120

Query: 119 GGCGTFVPLFLNLISSVRQYNRQSN-----VGTEPRVDPLQAAQTPVDEMMRHAYVDPND 173
           GGCGTFVPLFLNLISSVRQYNRQ           PRVDPLQAAQTPV+EMMRHAYVDPND
Sbjct: 121 GGCGTFVPLFLNLISSVRQYNRQMQQAAEAAAAAPRVDPLQAAQTPVEEMMRHAYVDPND 180

Query: 174 PTKIFLQQPNSESQLRRRTYHSQPVEH 200
           PT+I+LQQP+ ESQLRRR YHS   EH
Sbjct: 181 PTRIYLQQPSGESQLRRRAYHSGAAEH 207

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239148|ref|NP_196729.1| uncharacterized protein [Arabidopsis thaliana] gi|7573382|emb|CAB87686.1| putative protein [Arabidopsis thaliana] gi|17065570|gb|AAL32939.1| putative protein [Arabidopsis thaliana] gi|17380652|gb|AAL36156.1| unknown protein [Arabidopsis thaliana] gi|20148563|gb|AAM10172.1| putative protein [Arabidopsis thaliana] gi|21436275|gb|AAM51276.1| unknown protein [Arabidopsis thaliana] gi|21593584|gb|AAM65551.1| unknown [Arabidopsis thaliana] gi|332004326|gb|AED91709.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  339 bits (869), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 166/207 (80%), Positives = 177/207 (85%), Gaps = 7/207 (3%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTN--QVKARGTVYLSNIRVVFVA 58
           MALNPQL PN MPVPF NE+FVL RDGVEF VDKIPG +   VKA+G +YLSNIR+VFV+
Sbjct: 1   MALNPQLLPNGMPVPFVNEMFVLVRDGVEFEVDKIPGGHGGHVKAKGVIYLSNIRMVFVS 60

Query: 59  SKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKE 118
           SKPV NFVAFDMPLLYIH EKFNQPIFHCNNI+G VEPV+PENEHRALYSTHSFKILFKE
Sbjct: 61  SKPVDNFVAFDMPLLYIHAEKFNQPIFHCNNIAGQVEPVVPENEHRALYSTHSFKILFKE 120

Query: 119 GGCGTFVPLFLNLISSVRQYNRQ-----SNVGTEPRVDPLQAAQTPVDEMMRHAYVDPND 173
           GGCGTFVPLFLNLISSVRQYNRQ           P VDPLQAAQTPVDEMMRHAYVDPND
Sbjct: 121 GGCGTFVPLFLNLISSVRQYNRQMQQAAEAAAAAPHVDPLQAAQTPVDEMMRHAYVDPND 180

Query: 174 PTKIFLQQPNSESQLRRRTYHSQPVEH 200
           PT+I+LQQP+ ESQLRRR YHS   EH
Sbjct: 181 PTRIYLQQPSGESQLRRRAYHSGAAEH 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473858|ref|XP_003631369.1| PREDICTED: uncharacterized protein LOC100246511 [Vitis vinifera] gi|296085576|emb|CBI29308.3| unnamed protein product [Vitis vinifera]

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 162/203 (79%), Positives = 176/203 (86%), Gaps = 4/203 (1%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGT--NQVKARGTVYLSNIRVVFVA 58
           MALNPQLFPN MPVPF NE+ VLARDGVEF VDKIPG      KA+GT+YLSNIR+VFVA
Sbjct: 1   MALNPQLFPNGMPVPFMNEISVLARDGVEFEVDKIPGAHGGNFKAKGTIYLSNIRMVFVA 60

Query: 59  SKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKE 118
           +KPVGN  AFDMPLLY+H EKFNQPIF CNN+SG VEPV+PEN+HRALYSTHSFKILFKE
Sbjct: 61  NKPVGNITAFDMPLLYVHGEKFNQPIFFCNNVSGLVEPVVPENQHRALYSTHSFKILFKE 120

Query: 119 GGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIF 178
           GGCGTFVPLF NLI+SVR+YN  +  G E +VDPLQAAQTPVDEMMRHAYVDPNDPT+IF
Sbjct: 121 GGCGTFVPLFFNLITSVRRYNELAGSGPELQVDPLQAAQTPVDEMMRHAYVDPNDPTRIF 180

Query: 179 LQQPNSESQLRRRTYHSQPVEHS 201
           LQQP  ESQLRRRTYH  PVE S
Sbjct: 181 LQQPTPESQLRRRTYH--PVEDS 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723305|ref|NP_001237530.1| uncharacterized protein LOC100500660 [Glycine max] gi|255630875|gb|ACU15800.1| unknown [Glycine max]

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 157/200 (78%), Positives = 175/200 (87%), Gaps = 4/200 (2%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQ----VKARGTVYLSNIRVVF 56
           MALNPQLFPN MPVPF NE+FVLARDGVEF VDKIP +      +K +G VYLSNIR+VF
Sbjct: 1   MALNPQLFPNGMPVPFVNEMFVLARDGVEFEVDKIPASGNHGGNLKTKGIVYLSNIRMVF 60

Query: 57  VASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILF 116
           VA  PVG+F AFDMPLLYIH EKFNQPIFHCNN+SG VEPV+P ++HRALYSTHSFKILF
Sbjct: 61  VAKSPVGHFTAFDMPLLYIHGEKFNQPIFHCNNLSGHVEPVVPNDQHRALYSTHSFKILF 120

Query: 117 KEGGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTK 176
           KEGGCGTF+PLF NLI+SVRQYN+ +N+ T+  VDPLQA+QTPVDEMMRHAYVDPNDPTK
Sbjct: 121 KEGGCGTFIPLFFNLITSVRQYNQHTNMQTQNYVDPLQASQTPVDEMMRHAYVDPNDPTK 180

Query: 177 IFLQQPNSESQLRRRTYHSQ 196
           IFLQQPNS+SQLRRRTY  Q
Sbjct: 181 IFLQQPNSDSQLRRRTYQPQ 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057880|ref|XP_002299370.1| predicted protein [Populus trichocarpa] gi|222846628|gb|EEE84175.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 155/201 (77%), Positives = 174/201 (86%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASK 60
           MALNPQ F N MPVPF NELFVLARDGV+F VDKIPG  ++K++GT+YLSNIR+VFVA+K
Sbjct: 1   MALNPQFFQNGMPVPFENELFVLARDGVDFEVDKIPGCGKLKSKGTIYLSNIRMVFVAAK 60

Query: 61  PVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGG 120
           PV NF AFDMPLL+++ EKFNQPIF CNNISGFVEPV+PENE+RALYS HSFKILFKEGG
Sbjct: 61  PVANFYAFDMPLLFVNGEKFNQPIFLCNNISGFVEPVVPENENRALYSAHSFKILFKEGG 120

Query: 121 CGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQ 180
           CGTFVPLFLNLISSVRQYN+Q N     R+DPLQAA TPVDEMMRHAYVDPNDPT+IFLQ
Sbjct: 121 CGTFVPLFLNLISSVRQYNQQMNSAPVTRIDPLQAANTPVDEMMRHAYVDPNDPTRIFLQ 180

Query: 181 QPNSESQLRRRTYHSQPVEHS 201
           QP  +S+LRRRTY     E +
Sbjct: 181 QPTPQSELRRRTYQPSSYERT 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512897|gb|AFK44510.1| unknown [Medicago truncatula]

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/200 (77%), Positives = 174/200 (87%), Gaps = 4/200 (2%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTN----QVKARGTVYLSNIRVVF 56
           MALNPQLFPN MPV F NE+FVLARDGVEF VDKIPG      ++KA+G +YLSNIR+VF
Sbjct: 1   MALNPQLFPNGMPVAFVNEMFVLARDGVEFEVDKIPGAGSHGGRLKAKGIIYLSNIRMVF 60

Query: 57  VASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILF 116
           VA  PV    AFDMPLLYI+ EKFNQPIFHCNNISGFVEPV+P ++HRALYSTHSFKI+F
Sbjct: 61  VAKSPVDGLYAFDMPLLYINGEKFNQPIFHCNNISGFVEPVVPADQHRALYSTHSFKIIF 120

Query: 117 KEGGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTK 176
           KEGGCGTF+PLF NLI+SVRQYN+ +NV TE RVDPLQA+QTPVDEMMRHAYVDPNDPT+
Sbjct: 121 KEGGCGTFIPLFFNLIASVRQYNQHANVPTESRVDPLQASQTPVDEMMRHAYVDPNDPTR 180

Query: 177 IFLQQPNSESQLRRRTYHSQ 196
           IFLQQPN++SQL RRTY  Q
Sbjct: 181 IFLQQPNADSQLTRRTYQPQ 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125531097|gb|EAY77662.1| hypothetical protein OsI_32701 [Oryza sativa Indica Group]

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/200 (79%), Positives = 172/200 (86%), Gaps = 5/200 (2%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGT--NQVKARGTVYLSNIRVVFVA 58
           MA NPQLF N MPVPF  E+FVLARDGVEFHVDKIP       K +GT+YLSNIR+VFVA
Sbjct: 1   MAENPQLFGNGMPVPFYGEMFVLARDGVEFHVDKIPSAPGGHAKTKGTIYLSNIRMVFVA 60

Query: 59  SKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKE 118
           SKPVGNF AFDMPLLY+H EKFNQPIFHCNNISGFVEPV+PEN++RALYSTH+FKILFKE
Sbjct: 61  SKPVGNFFAFDMPLLYVHGEKFNQPIFHCNNISGFVEPVVPENQNRALYSTHTFKILFKE 120

Query: 119 GGCGTFVPLFLNLISSVRQYNR---QSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPT 175
           GGCGTFVPLFLNL++SVR+YN+   QS     PRVDPLQA QTPVD+MMRHAYVDPNDPT
Sbjct: 121 GGCGTFVPLFLNLVASVRRYNQFEAQSAASMAPRVDPLQAVQTPVDDMMRHAYVDPNDPT 180

Query: 176 KIFLQQPNSESQLRRRTYHS 195
           KIFLQQP  ESQLRRR YH 
Sbjct: 181 KIFLQQPAPESQLRRRNYHG 200

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543310|ref|XP_002512718.1| conserved hypothetical protein [Ricinus communis] gi|223548679|gb|EEF50170.1| conserved hypothetical protein [Ricinus communis]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 154/203 (75%), Positives = 178/203 (87%), Gaps = 2/203 (0%)

Query: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTN--QVKARGTVYLSNIRVVFVA 58
           MA+NPQLF N MPVPF NE+FVL+RDGVEF +DKI G++   VKA+GT+YLSN+R+VF+A
Sbjct: 1   MAVNPQLFENGMPVPFVNEIFVLSRDGVEFEIDKITGSHGGDVKAKGTIYLSNVRMVFLA 60

Query: 59  SKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKE 118
           +K VGNF AFDMPLLYIH EKF+QPIF CNN+SG VEPV+PENE RALYSTHSFKILFKE
Sbjct: 61  NKHVGNFNAFDMPLLYIHGEKFSQPIFFCNNLSGLVEPVVPENESRALYSTHSFKILFKE 120

Query: 119 GGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIF 178
           GGCGTF+PLF NLISSVRQ+NR S  G EP+++PLQA+QTPVDEMMRHAYVDPNDPT+IF
Sbjct: 121 GGCGTFIPLFFNLISSVRQHNRLSISGMEPQINPLQASQTPVDEMMRHAYVDPNDPTRIF 180

Query: 179 LQQPNSESQLRRRTYHSQPVEHS 201
           LQQP  +S+LRRRTYH  P E S
Sbjct: 181 LQQPTPQSELRRRTYHLSPAERS 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2181880	207	AT5G11680 "AT5G11680" [Arabido	0.990	0.966	0.806	3.7e-87
POMBASE|SPAC29B12.11c	174	SPAC29B12.11c "human WW domain	0.668	0.775	0.305	2e-08
WB|WBGene00015955	296	C18B2.4 [Caenorhabditis elegan	0.896	0.611	0.231	2.3e-07
ASPGD|ASPL0000030126	228	AN5598 [Emericella nidulans (t	0.495	0.438	0.307	2.3e-06
MGI|MGI:1921966	359	Wbp2nl "WBP2 N-terminal like"	0.603	0.339	0.274	4.3e-05
WB|WBGene00008404	235	D2013.6 [Caenorhabditis elegan	0.866	0.744	0.252	6.9e-05
UNIPROTKB|Q18966	235	D2013.6 "Protein D2013.6" [Cae	0.866	0.744	0.252	6.9e-05
MGI|MGI:104709	261	Wbp2 "WW domain binding protei	0.633	0.490	0.272	0.00088

TAIR|locus:2181880 AT5G11680 "AT5G11680" [Arabidopsis thaliana (taxid:3702)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 167/207 (80%), Positives = 178/207 (85%)

Query:     1 MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTN--QVKARGTVYLSNIRVVFVA 58
             MALNPQL PN MPVPF NE+FVL RDGVEF VDKIPG +   VKA+G +YLSNIR+VFV+
Sbjct:     1 MALNPQLLPNGMPVPFVNEMFVLVRDGVEFEVDKIPGGHGGHVKAKGVIYLSNIRMVFVS 60

Query:    59 SKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKE 118
             SKPV NFVAFDMPLLYIH EKFNQPIFHCNNI+G VEPV+PENEHRALYSTHSFKILFKE
Sbjct:    61 SKPVDNFVAFDMPLLYIHAEKFNQPIFHCNNIAGQVEPVVPENEHRALYSTHSFKILFKE 120

Query:   119 GGCGTFVPLFLNLISSVRQYNRQSNVGTE-----PRVDPLQAAQTPVDEMMRHAYVDPND 173
             GGCGTFVPLFLNLISSVRQYNRQ     E     P VDPLQAAQTPVDEMMRHAYVDPND
Sbjct:   121 GGCGTFVPLFLNLISSVRQYNRQMQQAAEAAAAAPHVDPLQAAQTPVDEMMRHAYVDPND 180

Query:   174 PTKIFLQQPNSESQLRRRTYHSQPVEH 200
             PT+I+LQQP+ ESQLRRR YHS   EH
Sbjct:   181 PTRIYLQQPSGESQLRRRAYHSGAAEH 207

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=ISS

POMBASE|SPAC29B12.11c SPAC29B12.11c "human WW domain binding protein-2 ortholog" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 44/144 (30%), Positives = 61/144 (42%)

Query:    18 NELFVLARDGVEFHV-DKIPGTNQ-VKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYI 75
             NE      DGV   +  K P        +G + L+N R+V++A     +F  F  P+  +
Sbjct:    21 NECMFDCFDGVAISILCKPPSLKSWTCTKGLLCLTNQRLVYIAKDTDCDFKDFQSPVANL 80

Query:    76 HDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSV 135
              D K NQP F  N  SG V PV P      +      K+ F EGG   FV  +  LI   
Sbjct:    81 KDTKLNQPFFGANYYSGTVMPV-PNG---GIPCEAEVKLQFNEGGIFNFVEAWNRLIQRF 136

Query:   136 RQYNRQSNVGTEPRVDPLQAAQTP 159
             ++ +  S V     +DPL     P
Sbjct:   137 QEVDSVSRV---QHLDPLPPYHRP 157

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0033554 "cellular response to stress" evidence=IEP

WB|WBGene00015955 C18B2.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 135 (52.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 45/194 (23%), Positives = 85/194 (43%)

Query:     1 MALNPQLFPNWMPVPFTN-ELFVLARDGVEFHVDK--IPGTNQVKARGTVYLSNIRVVFV 57
             M+LN    P+   +   N E+ +L    V+   +K  +P     K+ G +YL++ R++F+
Sbjct:     1 MSLNTSHTPDGQGILIYNGEMILLYTTNVKLKFEKYNVPAFKSTKS-GALYLTSHRIIFM 59

Query:    58 ASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFK 117
                    F +F MP   + D K  QP+   N + G+V+P+   N          +++ F 
Sbjct:    60 NESKKDEFKSFAMPFNSVRDVKLEQPLLTPNYLKGWVQPMPGGN----FDGCPEWRLSFP 115

Query:   118 EGGCGTFVPLFL---NLISSVRQYNRQSNVG--TEPRVDPLQAAQTPVDEMMRHAYVDPN 172
             +GGC  F    L   ++ S  R +      G   + +      A  P   +++  Y    
Sbjct:   116 KGGCIEFGEALLRAADMASRARPFAAPPAYGGNMQQQSGTTYYAAPPTYYLVQGTYQGFQ 175

Query:   173 DPTKIFLQQPNSES 186
              PT +F ++P +++
Sbjct:   176 APTNVFPERPPAQN 189

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

ASPGD|ASPL0000030126 AN5598 [Emericella nidulans (taxid:162425)]

 Score = 125 (49.1 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 32/104 (30%), Positives = 53/104 (50%)

Query:    45 GTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHR 104
             G ++L+N RV+++ ++ V    +F  PLL +HD   + P F  N  +  V+PV       
Sbjct:    53 GQIFLTNQRVIYIPAQRVDELESFSAPLLNLHDSHVSSPFFGPNVWNAVVQPVPGGGIPP 112

Query:   105 ALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQ---YNRQSNVG 145
             +L + H  K+ FKEGG   F   F  +   ++Q    +R+S  G
Sbjct:   113 SLVAVH-LKVTFKEGGAFDFHNQFERIKERLQQAVEISRESGRG 155

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

MGI|MGI:1921966 Wbp2nl "WBP2 N-terminal like" [Mus musculus (taxid:10090)]

 Score = 119 (46.9 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 36/131 (27%), Positives = 61/131 (46%)

Query:    11 WMPVPFTNELFVLARDGVEFHVDKIP-GTNQVKA--RGTVYLSNIRVVFVASKPVGN-FV 66
             W  +P    L     + V+    + P G+N      RG ++L++ RV+FV S+   +   
Sbjct:    13 WAAIPHGESLLKKCSE-VDLSFPQSPPGSNLFSGTKRGALFLTSYRVIFVTSRADNDPMF 71

Query:    67 AFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVP 126
             +F MP   +++    QPIF  N I G ++   P+        + +FKI+F++GG   F  
Sbjct:    72 SFTMPFHLMNNCTVEQPIFGANYIKGTIQAA-PDGGWEG---SATFKIVFRKGGAIDFAQ 127

Query:   127 LFLNLISSVRQ 137
             L     S+  Q
Sbjct:   128 LMAKAASAAAQ 138

GO:0007343 "egg activation" evidence=ISS

GO:0033011 "perinuclear theca" evidence=ISS

GO:0035038 "female pronucleus assembly" evidence=ISA

GO:0035039 "male pronucleus assembly" evidence=ISS

GO:0050699 "WW domain binding" evidence=ISS

WB|WBGene00008404 D2013.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 114 (45.2 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 48/190 (25%), Positives = 81/190 (42%)

Query:     1 MALNPQLFPNWMPVPFTN-ELFVLARDGVEFHVDKIPGTN-QVKARGTVYLSNIRVVFVA 58
             M++N    P+ + V   N E  V+   GV   +      N + +  GT+YL++ R++F+ 
Sbjct:     1 MSINTANTPDGLGVLLYNGETIVIFAQGVVMTLGTSENENLEGRRTGTIYLTSHRIIFMP 60

Query:    59 SKPVGNFV-AFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFK 117
               P G+++ +F++P   + D   NQPIF  N + G    V    +   +     +++ F 
Sbjct:    61 D-P-GDWLKSFEIPFNSMQDVNLNQPIFGANYLCGIASAV----QGGQMRGEVKWRMTFN 114

Query:   118 EGGCGTFVPLFLNLIS-SVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPN--DP 174
              GGC  F    L  +  +VR     +     P +    +A  P           PN  +P
Sbjct:   115 RGGCIEFGQSLLQAVERAVRMRPENAPPAYSPPIGDFYSA--PPAYYQPSPDQGPNGFNP 172

Query:   175 TK-IFLQQPN 183
             T   F  QPN
Sbjct:   173 TTDSFPDQPN 182

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

UNIPROTKB|Q18966 D2013.6 "Protein D2013.6" [Caenorhabditis elegans (taxid:6239)]

 Score = 114 (45.2 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 48/190 (25%), Positives = 81/190 (42%)

Query:     1 MALNPQLFPNWMPVPFTN-ELFVLARDGVEFHVDKIPGTN-QVKARGTVYLSNIRVVFVA 58
             M++N    P+ + V   N E  V+   GV   +      N + +  GT+YL++ R++F+ 
Sbjct:     1 MSINTANTPDGLGVLLYNGETIVIFAQGVVMTLGTSENENLEGRRTGTIYLTSHRIIFMP 60

Query:    59 SKPVGNFV-AFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFK 117
               P G+++ +F++P   + D   NQPIF  N + G    V    +   +     +++ F 
Sbjct:    61 D-P-GDWLKSFEIPFNSMQDVNLNQPIFGANYLCGIASAV----QGGQMRGEVKWRMTFN 114

Query:   118 EGGCGTFVPLFLNLIS-SVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPN--DP 174
              GGC  F    L  +  +VR     +     P +    +A  P           PN  +P
Sbjct:   115 RGGCIEFGQSLLQAVERAVRMRPENAPPAYSPPIGDFYSA--PPAYYQPSPDQGPNGFNP 172

Query:   175 TK-IFLQQPN 183
             T   F  QPN
Sbjct:   173 TTDSFPDQPN 182

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:104709 Wbp2 "WW domain binding protein 2" [Mus musculus (taxid:10090)]

 Score = 106 (42.4 bits), Expect = 0.00088, P = 0.00088
 Identities = 37/136 (27%), Positives = 61/136 (44%)

Query:     1 MALNPQLFPNWMPVPFTNELFVLARDGVE--FH-VDKIPGTNQVKARGTVYLSNIRVVFV 57
             MALN         +    E  +++ D VE  F+ +  +P   +   +GTVYL+  RV+F+
Sbjct:     1 MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL 60

Query:    58 ASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFK 117
              SK      +F MP   + D +  QP+F  N    F++ ++          + S+K+ F 
Sbjct:    61 -SKGKDAMQSFMMPFYLMKDCEIKQPVFGAN----FIKGIVKAEAGGGWEGSASYKLTFT 115

Query:   118 EGGCGTFVPLFLNLIS 133
              GG   F    L + S
Sbjct:   116 AGGAIEFGQRMLQVAS 131


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      202       202   0.00090  111 3  11 22  0.46    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  171 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.70u 0.08s 18.78t   Elapsed:  00:00:01
  Total cpu time:  18.71u 0.08s 18.79t   Elapsed:  00:00:01
  Start:  Mon May 20 19:40:50 2013   End:  Mon May 20 19:40:51 2013

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_III0530 hypothetical protein (202 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
cd13214	106	cd13214, PH-GRAM_WBP2, WW binding protein 2 (WB2)	6e-43

>gnl|CDD|241368 cd13214, PH-GRAM_WBP2, WW binding protein 2 (WB2) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  139 bits (352), Expect = 6e-43
 Identities = 40/96 (41%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 42  KARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPEN 101
             +G +YL+N R++FV  KP   F +F MPLL I D KF QP+F  N I G V+PV    
Sbjct: 15  SKKGRLYLTNQRLIFVPKKPTDAFQSFSMPLLNIKDTKFEQPVFGANYIKGTVKPVPGGG 74

Query: 102 EHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQ 137
                  + SFK+ FKEGG   F   FL L     +
Sbjct: 75  WPG----SASFKLTFKEGGAIEFGQAFLRLAERASR 106

WBP2 plays a number of roles including: acting as a tyrosine kinase substrate, activation of estrogen receptor alpha (ERalpha)/progesterone receptor (PR) transcription, and playing a role in breast cancer. WBP2 contain a N-terminal PH-GRAM domain and a C-terminal WWbp domain. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form and binds to WW domains. WW domains contain two highly conserved tryptophans that are spaced 20-23 residues apart. They bind proline-rich peptide motifs [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG3294	261	consensus WW domain binding protein WBP-2, contain	100.0
PF10349	116	WWbp: WW-domain ligand protein; InterPro: IPR01882	99.49
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	98.65
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	97.57
PF14470	96	bPH_3: Bacterial PH domain	96.87
KOG2760	432	consensus Vacuolar sorting protein VPS36 [Intracel	96.57
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	95.81
PF12068	213	DUF3548: Domain of unknown function (DUF3548); Int	94.64
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	93.91
smart00683	55	DM16 Repeats in sea squirt COS41.4, worm R01H10.6,	93.23
PF08000	124	bPH_1: Bacterial PH domain; InterPro: IPR012544 Th	91.87
PF08567	79	TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom	90.89
PF04283	221	CheF-arch: Chemotaxis signal transduction system p	87.08
KOG1090	1732	consensus Predicted dual-specificity phosphatase [	86.73
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	85.48

>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-51  Score=349.85  Aligned_cols=182  Identities=34%  Similarity=0.518  Sum_probs=158.0

Q ss_pred             CccCCccCCCCc-eeeCCCcEEEEEeCcEEEEEccCCC---CccccccceEEeeccEEEEEeCCCCCceeeecccccccc
Q 028854            1 MALNPQLFPNWM-PVPFTNELFVLARDGVEFHVDKIPG---TNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIH   76 (202)
Q Consensus         1 MalN~~l~~~g~-pl~~~~E~ill~r~~v~l~~~~~p~---~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~   76 (202)
                      |||||+|+++|. +|++++|+||+.+|+|+|+|.+++.   .+++++||+||||++|||||+++++|+|+||+|||++|+
T Consensus         1 MslN~sht~~G~gvl~~n~E~i~~~~dgVeltf~~~~~~~~~~~g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mk   80 (261)
T KOG3294|consen    1 MSLNTSHTPNGRGVLLYNGESILLVYDGVELTFDKMPNVSEAFKGTKKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMK   80 (261)
T ss_pred             CccccccCCCCceeEecCCcEEEEeeCCeEEEeeccCCCccccccceeeeEEeecceEEEecCCCCcchhhhcchhhhhh
Confidence            999999999996 6999999999999999999998765   599999999999999999999999999999999999999


Q ss_pred             cCeeeccccccceeeEEEEecCCCCCCCCCCcceEEEEEEccCCeechHHHHHHHHHHHHhhcccccCCCCCCCCCCCCC
Q 028854           77 DEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAA  156 (202)
Q Consensus        77 d~~~~QP~FGaNy~~g~V~p~~~gg~~~g~~~~~~~kl~F~~GG~~eF~~~f~~l~~~~~~~~~~~~~~~~~~~~plpay  156 (202)
                      |+||+||+||||||+|+|+|+++|    ||++.++|||+|++|||+||+++|+++.+++++...+..+ ...+..+.++|
T Consensus        81 d~klnQPvF~aNyikGtV~pvpgG----g~~g~as~Kl~F~~GG~ieFgq~~l~~~s~a~r~r~~sg~-~~~~~~p~~~y  155 (261)
T KOG3294|consen   81 DVKLNQPVFGANYIKGTVQPVPGG----GWEGEASFKLTFNEGGCIEFGQLLLQAASRASRGRPLSGA-YGQSAAPGPPY  155 (261)
T ss_pred             hceecCcccccceeeeeEeecCCC----CccceeEEEEEecCCCchhHHHHHHHHHHHHHhccccccc-ccccccCCCCc
Confidence            999999999999999999999877    6999999999999999999999999999999988877522 23455565565


Q ss_pred             CCCc---hhcc---ceeeeCCCCCCeeeecCC-CCcccccc
Q 028854          157 QTPV---DEMM---RHAYVDPNDPTKIFLQQP-NSESQLRR  190 (202)
Q Consensus       157 ~~p~---~~~~---~~A~vdP~DPt~iy~~QP-~~~~~~~~  190 (202)
                      -.|.   ..+.   ..-.++|+||..+|   | .++++++|
T Consensus       156 ~~Ppp~~~~~y~~Pp~y~~ppp~P~~y~---Pgpp~~~~~r  193 (261)
T KOG3294|consen  156 VDPPPVTSGMYPAPPGYPVPPPPPNGYY---PGPPEPDRAR  193 (261)
T ss_pred             cCCcccccccccCCCCCCCCCCCccccc---CCCCCccccc
Confidence            5541   1111   12359999999988   8 77888777

>PF10349 WWbp: WW-domain ligand protein; InterPro: IPR018826 This entry represents a sequence domain found in WW domain-binding protein that is characterised by several short PY and PT-like motifs of the PPPPY form

Probab=99.49  E-value=1e-13  Score=108.22  Aligned_cols=78  Identities=23%  Similarity=0.311  Sum_probs=58.8

Q ss_pred             CCCcceEEEEEEccCCeechHHHHHHHHHHHHhhcccccCC---------CCCCCCCCCCCCC----CchhccceeeeCC
Q 028854          105 ALYSTHSFKILFKEGGCGTFVPLFLNLISSVRQYNRQSNVG---------TEPRVDPLQAAQT----PVDEMMRHAYVDP  171 (202)
Q Consensus       105 g~~~~~~~kl~F~~GG~~eF~~~f~~l~~~~~~~~~~~~~~---------~~~~~~plpay~~----p~~~~~~~A~vdP  171 (202)
                      ||++.++|||+||+||||||+++|++|+++++++.++.+..         +..+.+++|+|+.    |.    ..+|-.|
T Consensus         4 Gw~g~~~fKltFk~GGAieFgq~~~~~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~y~~Pp----~~~y~~p   79 (116)
T PF10349_consen    4 GWEGQAEFKLTFKSGGAIEFGQAMLRLAERASRAVPVQREPGGGYYPVPPGGVHLPPLPPYPGPYGAPP----PPAYGPP   79 (116)
T ss_pred             CccCceEEEEEeCCCChHHHHHHHHHHHHHHhhccccccccccccccCCccccCCCCCCCCCCCCCCCC----CcccCCC
Confidence            79999999999999999999999999999999998876554         3457888999876    42    1222222


Q ss_pred             ----CCCCeeeecCCCCcc
Q 028854          172 ----NDPTKIFLQQPNSES  186 (202)
Q Consensus       172 ----~DPt~iy~~QP~~~~  186 (202)
                          ..+...|.++|....
T Consensus        80 p~~~~~~~~~~~~~p~~~~   98 (116)
T PF10349_consen   80 PPGYPPPPAAYPPPPPPNS   98 (116)
T ss_pred             CCCCCCCCCcCCCCCCCcC
Confidence                356666666665443

These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis []. This domain lies just downstream of IPR004182 from INTERPRO in many sequences.

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=98.65  E-value=6.8e-08  Score=72.32  Aligned_cols=76  Identities=22%  Similarity=0.312  Sum_probs=51.6

Q ss_pred             cCCCCceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeecccc
Q 028854            7 LFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIF   85 (202)
Q Consensus         7 l~~~g~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~F   85 (202)
                      ++..+.|+..++|.+++..++|-|--.+.  ....-.+|++|||+|||||+.+. ...-.|+++||..+...+...-+|
T Consensus         2 ~t~s~~p~L~~~E~~~~~q~~V~LYdG~~--K~~~~q~G~l~LTsHRliw~d~~-~~~~~s~~l~L~~i~~~e~~~gf~   77 (89)
T PF11605_consen    2 LTSSGRPVLEPNETIVYQQDGVGLYDGDQ--KTPNFQNGRLYLTSHRLIWVDDS-DPSKHSIALPLSLISHIEYSAGFL   77 (89)
T ss_dssp             B-TCS-C---TT--EEEEEEEEEEEETTE--CSTT-SCEEEEEESSEEEEEESS-GHCHH-EEEEGGGEEEEEEE-STT
T ss_pred             cccccCcccCCCceEEEEecCeeeEcCCc--cCccccCCEEEEEeeEEEEEcCC-CCceeEEEEEchHeEEEEEEcccc
Confidence            45678999999999999999999976421  11245689999999999999887 334459999999999887766655

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=97.57  E-value=9.3e-05  Score=51.66  Aligned_cols=43  Identities=21%  Similarity=0.342  Sum_probs=32.6

Q ss_pred             cccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeec
Q 028854           40 QVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQ   82 (202)
Q Consensus        40 ~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~Q   82 (202)
                      +....|++|||++||+|.+........++.+||..|.+.+-+|
T Consensus        27 ~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~   69 (69)
T PF02893_consen   27 KIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET   69 (69)
T ss_dssp             ---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred             ccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence            6678899999999999999875566679999999998876543

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>PF14470 bPH_3: Bacterial PH domain

Probab=96.87  E-value=0.0031  Score=45.80  Aligned_cols=63  Identities=19%  Similarity=0.230  Sum_probs=47.8

Q ss_pred             CCCcEEEEEeCcE-EEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeeccccc
Q 028854           16 FTNELFVLARDGV-EFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFH   86 (202)
Q Consensus        16 ~~~E~ill~r~~v-~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~FG   86 (202)
                      .++|.|++...+. +..        .....|.+++||+||+|+....-.....-++|+.+|.+.+++.=|++
T Consensus         2 ~~~E~I~~~~~~~~~~~--------~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~   65 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYF--------FTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILG   65 (96)
T ss_pred             cCCCEEEEEEEEEEeec--------ccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccc
Confidence            4678888765432 111        34667999999999999998744456678999999999999877755

>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=0.021  Score=53.23  Aligned_cols=89  Identities=18%  Similarity=0.230  Sum_probs=52.8

Q ss_pred             ccceEEeeccEEEEEe--CCCCCceeeecccccccccCeeec-c--ccc-cceeeEEEEecCCCCCCCCCCcc---eEEE
Q 028854           43 ARGTVYLSNIRVVFVA--SKPVGNFVAFDMPLLYIHDEKFNQ-P--IFH-CNNISGFVEPVIPENEHRALYST---HSFK  113 (202)
Q Consensus        43 ~~G~~yLTn~RlVFv~--~~~~~~f~SFs~Pl~~i~d~~~~Q-P--~FG-aNy~~g~V~p~~~gg~~~g~~~~---~~~k  113 (202)
                      .+|++.||++|+|-.+  +. .+.=.+.++|+..+-.+.-.. +  .|| +|.+..+..+..++..+ |.-..   .-++
T Consensus        65 ~dg~~vltt~Rliw~~p~~~-~~~~~~~~~pls~vI~v~~~~~~~~~~g~~~~i~~~~~~~~~~~~~-gp~~a~~~~~iq  142 (432)
T KOG2760|consen   65 DDGTLVLTTHRLIWRSPTSS-ADVEVTWVCPLSMVINVGEPAKSELTFGKINRIVVILHKPNPRFSP-GPCPASTFAFIQ  142 (432)
T ss_pred             cchhhhhhhceeeecCcccc-cccceeeeeceeEEEEecCccchhhcccccceEEEEeCCCCCcCCC-CCcccceeeEEE
Confidence            4566677777766664  22 245567788887665443322 1  355 66677766554333222 12122   2479


Q ss_pred             EEEccCCeechHHHHHHHHH
Q 028854          114 ILFKEGGCGTFVPLFLNLIS  133 (202)
Q Consensus       114 l~F~~GG~~eF~~~f~~l~~  133 (202)
                      |.|+.||-.+|++++..-..
T Consensus       143 LsFR~~g~~~F~~~l~ee~~  162 (432)
T KOG2760|consen  143 LSFRGSGSVDFLEALLEEKN  162 (432)
T ss_pred             EEecCCCcHHHHHHHHHHHH
Confidence            99999999999776655443

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=95.81  E-value=0.01  Score=40.22  Aligned_cols=39  Identities=28%  Similarity=0.509  Sum_probs=30.5

Q ss_pred             cccccceEEeeccEEEEEeCCCCCcee-eecccccccccCe
Q 028854           40 QVKARGTVYLSNIRVVFVASKPVGNFV-AFDMPLLYIHDEK   79 (202)
Q Consensus        40 ~~~~~G~~yLTn~RlVFv~~~~~~~f~-SFs~Pl~~i~d~~   79 (202)
                      .....|++|||++||.|-+... +... .+.+|+..|...+
T Consensus        19 ~~~~~G~lyiT~~~l~F~S~~~-~~~~~~~~ipl~~I~~i~   58 (61)
T smart00568       19 DGPVQGRLYISNYRLCFRSDLP-GKLTPKVVIPLADITRIE   58 (61)
T ss_pred             CccccEEEEEECCEEEEEccCC-CCeeEEEEEEHHHeeEEE
Confidence            3567899999999999999763 4444 7999998887543

>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised

Probab=94.64  E-value=0.034  Score=47.87  Aligned_cols=59  Identities=15%  Similarity=0.276  Sum_probs=47.2

Q ss_pred             CceeeecccccccccCeeeccccccceeeEEEEecCCCCCCCCCCcceEEEEEEccCCeechHHHHHHHH
Q 028854           63 GNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLI  132 (202)
Q Consensus        63 ~~f~SFs~Pl~~i~d~~~~QP~FGaNy~~g~V~p~~~gg~~~g~~~~~~~kl~F~~GG~~eF~~~f~~l~  132 (202)
                      ..-.+|++||.-|+.-+..-|-+|-+||-...+.  |...|.         |.|.+||+-+|++.+.+..
T Consensus       109 ~~~~aFsv~lsdl~Si~~~~p~~G~~~lv~~~kd--G~~~p~---------L~Fh~gg~~~fl~~L~~~v  167 (213)
T PF12068_consen  109 RSSYAFSVPLSDLKSIRVSKPSLGWWYLVFILKD--GTSLPP---------LHFHDGGSKEFLKSLQRYV  167 (213)
T ss_pred             CcceEEEEEhhheeeEEecCCCCCceEEEEEecC--CCccCc---------eEEecCCHHHHHHHHHhhE
Confidence            3566999999999999999999999998777764  333343         9999999999976665543

This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=93.91  E-value=0.11  Score=47.76  Aligned_cols=72  Identities=21%  Similarity=0.289  Sum_probs=57.0

Q ss_pred             cCCCCceeeCCCcEEEEEeCcEE-EEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeecccc
Q 028854            7 LFPNWMPVPFTNELFVLARDGVE-FHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIF   85 (202)
Q Consensus         7 l~~~g~pl~~~~E~ill~r~~v~-l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~F   85 (202)
                      +-.+|....||+|.++-...+|- |+-+       ...=|+.++||.|+|.-++. ++.| -.|+|++.|...++...-|
T Consensus       143 ii~~~~L~lLp~E~v~~~~~gVwnls~d-------qGnLGtfivTNvRiVW~A~~-ne~f-NVSiPylqi~~i~ir~SKf  213 (339)
T PF07289_consen  143 IIRDGQLKLLPQEQVYSRVNGVWNLSSD-------QGNLGTFIVTNVRIVWFADM-NESF-NVSIPYLQIKSIRIRDSKF  213 (339)
T ss_pred             eeeCCeEeeCCccEEeeccCCEEEcccC-------CCceeEEEEeeeEEEEEccC-Cccc-cccchHhhheeeeeecccc
Confidence            34578888899999988888775 3221       22339999999999999986 4554 5899999999999999999


Q ss_pred             cc
Q 028854           86 HC   87 (202)
Q Consensus        86 Ga   87 (202)
                      |.
T Consensus       214 G~  215 (339)
T PF07289_consen  214 GP  215 (339)
T ss_pred             ce
Confidence            84

It consists of eukaryotic proteins of around 375 residues in length.

>smart00683 DM16 Repeats in sea squirt COS41

Probab=93.23  E-value=0.27  Score=33.87  Aligned_cols=37  Identities=16%  Similarity=0.320  Sum_probs=30.3

Q ss_pred             cccceEEeeccEEEEEeCCCCCceeeecccccccccCee
Q 028854           42 KARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKF   80 (202)
Q Consensus        42 ~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~   80 (202)
                      ...|++++||.|+|--+.. . .--.+|+|+..|...++
T Consensus        18 G~~G~l~VTNlRiiW~s~~-~-~~~NlSIgy~~i~~i~~   54 (55)
T smart00683       18 GDLGVFFVTNLRLVWHSDT-N-PRFNISVGYLQITNVRV   54 (55)
T ss_pred             CCeeEEEEEeeEEEEEeCC-C-CceEEEEcceeEEEEEe
Confidence            3569999999999999987 3 55678999999887654

4, worm R01H10.6, fly CG1126 etc.

>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins

Probab=91.87  E-value=0.27  Score=38.94  Aligned_cols=75  Identities=19%  Similarity=0.289  Sum_probs=49.0

Q ss_pred             ceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCC-CCceeee-cccccccccCeeeccccccce
Q 028854           12 MPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKP-VGNFVAF-DMPLLYIHDEKFNQPIFHCNN   89 (202)
Q Consensus        12 ~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~-~~~f~SF-s~Pl~~i~d~~~~QP~FGaNy   89 (202)
                      .++.++||.|+...+.+               +..+.+||+|||++..+. ++.=..+ |+|+..|....++.       
T Consensus        24 ~~~L~~gE~I~~ayk~i---------------RD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siET-------   81 (124)
T PF08000_consen   24 EPLLLDGEEIEAAYKLI---------------RDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIET-------   81 (124)
T ss_dssp             GGGSSTT--EEEEEEES---------------SEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEE-------
T ss_pred             HHhcCCCCeeeeeehhh---------------ceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEe-------
Confidence            56678899888754422               356677999999999642 3333333 67999988666643       


Q ss_pred             eeEEEEecCCCCCCCCCCcceEEEEEEccCCe
Q 028854           90 ISGFVEPVIPENEHRALYSTHSFKILFKEGGC  121 (202)
Q Consensus        90 ~~g~V~p~~~gg~~~g~~~~~~~kl~F~~GG~  121 (202)
                             +  |    -+--.+++|||+..++.
T Consensus        82 -------A--G----~~DlD~Elki~i~~~~~  100 (124)
T PF08000_consen   82 -------A--G----TFDLDSELKIWISGQGF  100 (124)
T ss_dssp             -------C--S----STTSEEEEEEEETTESS
T ss_pred             -------C--C----cccCcccEEEEECCCcE
Confidence                   2  2    24456889998887774

; PDB: 3DCX_E 3HSA_C 3B77_D.

>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity

Probab=90.89  E-value=0.29  Score=35.69  Aligned_cols=58  Identities=21%  Similarity=0.267  Sum_probs=43.5

Q ss_pred             ccccccceEEeeccE--EEEEeCCCCCceeeecccccccccCeeeccccccceeeEEEEecCCCCCCCCCCcceEEEEEE
Q 028854           39 NQVKARGTVYLSNIR--VVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILF  116 (202)
Q Consensus        39 ~~~~~~G~~yLTn~R--lVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~FGaNy~~g~V~p~~~gg~~~g~~~~~~~kl~F  116 (202)
                      ...+..|+||||+-|  ++..++. .+...++++|+..|...+.              -|.  +      ...+.+||..
T Consensus         8 ~yKK~~G~L~l~~d~~~~~W~~~~-~~~~~~v~i~~~~I~~lq~--------------Sp~--~------s~Kv~Lki~~   64 (79)
T PF08567_consen    8 SYKKKDGTLTLTEDRKPLEWTPKA-SDGPSTVSIPLNDIKNLQQ--------------SPE--G------SPKVMLKIVL   64 (79)
T ss_dssp             EETTEEEEEEEETTCSSEEEEECC-SSSSSEEEEETTTEEEEEE----------------T--T------SSTEEEEEEE
T ss_pred             EEEcCCcEEEEecCCceEEEeecC-CCCCceEEEEHHHhhhhcc--------------CCC--C------CcceEEEEEE
Confidence            445778999999999  9999987 5566699999999985333              232  2      2457888888


Q ss_pred             ccC
Q 028854          117 KEG  119 (202)
Q Consensus       117 ~~G  119 (202)
                      +++
T Consensus        65 ~~~   67 (79)
T PF08567_consen   65 KDD   67 (79)
T ss_dssp             TTS
T ss_pred             ecC
Confidence            888

The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.

>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function

Probab=87.08  E-value=2.5  Score=36.55  Aligned_cols=75  Identities=23%  Similarity=0.270  Sum_probs=51.2

Q ss_pred             cccceEEeeccEEEEEeCCCCCceeeecccccccccCeeecc-----ccccceeeEEEEecCCCCCCCCCCcceEEEEEE
Q 028854           42 KARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQP-----IFHCNNISGFVEPVIPENEHRALYSTHSFKILF  116 (202)
Q Consensus        42 ~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP-----~FGaNy~~g~V~p~~~gg~~~g~~~~~~~kl~F  116 (202)
                      =.+|++.||+.||||....     ....+||..|.|...+.|     -|-.+|.+-.+...  +         .+..+.|
T Consensus        25 W~~~rIiLs~~rlvl~~~~-----~k~~Ipls~I~Di~~~~~~~~~~~~~~~~~si~~~~~--~---------~~~v~~i   88 (221)
T PF04283_consen   25 WVKGRIILSNDRLVLAFND-----GKITIPLSSIEDIGVRLPPNQLLAFFSDYVSIKYKSD--E---------GERVILI   88 (221)
T ss_pred             cEEEEEEEecCEEEEEcCC-----CeEEEecceeEecccccCccccccccCceEEEEEecC--C---------CcEEEEE
Confidence            3579999999999999844     123899999999888655     34455555555443  1         2455666


Q ss_pred             ccCCe---echHHHHHHHH
Q 028854          117 KEGGC---GTFVPLFLNLI  132 (202)
Q Consensus       117 ~~GG~---~eF~~~f~~l~  132 (202)
                      .-+..   .+|...+++++
T Consensus        89 ~~~~~~~~e~F~~~lf~~l  107 (221)
T PF04283_consen   89 SPEDSKTIEKFETKLFRAL  107 (221)
T ss_pred             EcCCcccHHHHHHHHHHHh
Confidence            66666   77776555554

>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]

Probab=86.73  E-value=0.49  Score=49.22  Aligned_cols=120  Identities=23%  Similarity=0.250  Sum_probs=62.9

Q ss_pred             CCceeeCCCcEEEEEeCcEEEEEcc----CC---CCccccccceEEeeccEEEEEeCCCC----CceeeecccccccccC
Q 028854           10 NWMPVPFTNELFVLARDGVEFHVDK----IP---GTNQVKARGTVYLSNIRVVFVASKPV----GNFVAFDMPLLYIHDE   78 (202)
Q Consensus        10 ~g~pl~~~~E~ill~r~~v~l~~~~----~p---~~~~~~~~G~~yLTn~RlVFv~~~~~----~~f~SFs~Pl~~i~d~   78 (202)
                      +-.|+.++||..+..--.|=|--++    +.   .....-++|.+||||+||||--+...    +..-==++|+..+...
T Consensus       783 ~~~P~LlpGE~lv~D~lrcyLlpdgrE~e~~~~~~~~LlPAeGalFLTnYRVIFkG~p~Dpl~~eqviVrtfPlasl~ke  862 (1732)
T KOG1090|consen  783 NFDPVLLPGEFLVSDPLRCYLLPDGRESEMSLNRLENLLPAEGALFLTNYRVIFKGKPVDPLATEQVIVRTFPLASLEKE  862 (1732)
T ss_pred             CCCccccCchhhccCCceEEEecCcccccccccccccccccCcceEEeeeEEEecCCCCCcccccceEEEEeehhhhhhh
Confidence            4478999999877633333232221    10   11567799999999999999766522    2222234577666544


Q ss_pred             eeeccccccceeeEEEEecCCC-CCCCCCCcc----eEEEEEEccCCeechHHHHHHHHHHHHhhcc
Q 028854           79 KFNQPIFHCNNISGFVEPVIPE-NEHRALYST----HSFKILFKEGGCGTFVPLFLNLISSVRQYNR  140 (202)
Q Consensus        79 ~~~QP~FGaNy~~g~V~p~~~g-g~~~g~~~~----~~~kl~F~~GG~~eF~~~f~~l~~~~~~~~~  140 (202)
                      |=         |  .|+-..+. -+-.|+.-+    --.|..|..-=++|=.+.|.+.++.+|+..+
T Consensus       863 Kk---------i--sv~~~~~dQll~~Glqlrs~~fql~k~Afd~ev~~d~~E~frk~l~K~r~p~d  918 (1732)
T KOG1090|consen  863 KK---------I--SVKKLIPDQLLEKGLQLRSIIFQLSKCAFDIEVAFDEDEIFRKALEKFREPID  918 (1732)
T ss_pred             hh---------h--hhhccChHHHHHhcchhhhHHHHHHHhhcCccccccHHHHHHHHHHHhcCCcc
Confidence            31         1  11101000 000011111    1225556555566666667777776666544

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=85.48  E-value=3.9  Score=37.72  Aligned_cols=114  Identities=17%  Similarity=0.193  Sum_probs=75.9

Q ss_pred             eeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeeccccccceeeEE
Q 028854           14 VPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGF   93 (202)
Q Consensus        14 l~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~FGaNy~~g~   93 (202)
                      ...+||.++-.-++||=+=      +--..+|++++||-|+|..+.+ ... -++|+=+.+|.+.+.+.=   .+.+.|.
T Consensus        18 ~lr~GE~~i~~~~~VEDtK------GN~G~~G~l~vTNLR~iW~s~~-~~r-~NlSIG~~~i~~i~~~~~---~sklrg~   86 (339)
T PF07289_consen   18 KLRPGEFIIDRLDPVEDTK------GNNGDRGRLVVTNLRLIWHSLK-RPR-INLSIGYNCITNISTKTV---NSKLRGN   86 (339)
T ss_pred             ccccceEEEEeeeceeecc------CCCCCeeEEEEEeeeeEEeccC-CCc-eeEEeeceeEEEEEEEEe---eccccCc
Confidence            3458899988888777432      2223789999999999999986 333 788999888887666521   4446665


Q ss_pred             EEecCCCCCCCCCCcceEEEEEEcc--C-----CeechHHHHHHHHHHHHhhcccc
Q 028854           94 VEPVIPENEHRALYSTHSFKILFKE--G-----GCGTFVPLFLNLISSVRQYNRQS  142 (202)
Q Consensus        94 V~p~~~gg~~~g~~~~~~~kl~F~~--G-----G~~eF~~~f~~l~~~~~~~~~~~  142 (202)
                      .++.---    .-.+...|++.|..  .     -.++.+....++++.-+-++++.
T Consensus        87 teaL~i~----~k~~~~rfEFiFt~~~~~~~~~~lf~~v~~v~raY~ts~lYRelk  138 (339)
T PF07289_consen   87 TEALYIL----AKFNNTRFEFIFTNLSPNSPRQRLFTSVQAVYRAYETSRLYRELK  138 (339)
T ss_pred             eeEEEEe----eecCCceEEEEeccCCCCCccchHHHHHHHHHHHHHHHhHhhhhh
Confidence            4443100    11234677777762  2     23667777788888877777765

It consists of eukaryotic proteins of around 375 residues in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	1e-04

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Length = 140

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 13  PVPFTNELFVLARDGVEFH--VDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDM 70
            +   NE  V+ + GV  +   +KI         GT+ LS  R+++   K     +A  +
Sbjct: 11  GLLEINETLVIQQRGVRIYDGEEKIKFDA-----GTLLLSTHRLIWRDQKNHECCMAILL 65

Query: 71  PLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHS--FKILFKEGGCGTFVPLF 128
             + +  E+    I     I   + P  P  E     S+ +   K+ FKE G   F    
Sbjct: 66  SQI-VFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRL 124

Query: 129 LNLISS 134
              ++ 
Sbjct: 125 SEEMTQ 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	99.94
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	99.84
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	97.62
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	96.86
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	96.65
1zyi_A	171	Methylosome subunit picln; PH domain, cell volume	95.17
3hsa_A	126	Pleckstrin homology domain; YP_926556.1, structura	92.54
1pfj_A	108	TFIIH basal transcription factor complex P62 subun	84.32
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	83.8

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=99.94  E-value=1.5e-27  Score=191.39  Aligned_cols=120  Identities=12%  Similarity=0.108  Sum_probs=107.7

Q ss_pred             cCCCCceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeeccccc
Q 028854            7 LFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFH   86 (202)
Q Consensus         7 l~~~g~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~FG   86 (202)
                      ++.++.|++++||.||+..++|.|...+..  ....++|++|||||||||++++ .+.++||++||.+|.+++++||+||
T Consensus        17 ~t~s~rp~L~~~E~il~~~d~V~Ly~g~~k--~~~~k~G~lyLTshRIIyv~~~-~~~~~SfslPL~~v~~~e~~~~~fg   93 (145)
T 2cay_A           17 TTSSGQPLLREGEKDIFIDQSVGLYHGKSK--ILQRQRGRIFLTSQRIIYIDDA-KPTQNSLGLELDDLAYVNYSSGFLT   93 (145)
T ss_dssp             BCTTSCBCCCTTCCEEEEEEEEEEEETTEE--CTTCSSEEEEEESSEEEEEESS-CHHHHCEEEEGGGEEEEEEECSSSS
T ss_pred             hccCCCcccCCCCEEEEEcCCcceecCCCC--CcCCCccEEEEEcCeEEEecCC-CCcceEEEeEhHheeeeeEEcCccc
Confidence            577899999999999999999999996432  2568999999999999999987 4678999999999999999999999


Q ss_pred             cceeeEEEEecCCCCCCCCCCcceEEEEEEccCCeechHHHHHHHHHHHH
Q 028854           87 CNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVR  136 (202)
Q Consensus        87 aNy~~g~V~p~~~gg~~~g~~~~~~~kl~F~~GG~~eF~~~f~~l~~~~~  136 (202)
                      +| ++++|.+.++      |.+...+||+|++||++||.++|++++.+++
T Consensus        94 ~s-~Ki~l~~~p~------~~~~~~~KLsFk~GGa~eF~~~l~~al~~~~  136 (145)
T 2cay_A           94 RS-PRLILFFKDP------SSSTEFVQLSFRKSDGVLFSQATERALENIL  136 (145)
T ss_dssp             SS-CEEEEEESSC------SSTTCCEEEEESSSCCHHHHHHHHHHHHHHH
T ss_pred             cC-ceEEEEecCC------CCCceEEEEEEcCCCchHHHHHHHHHHHHHH
Confidence            97 8999999853      7888999999999999999999999987764

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=99.84  E-value=1.8e-20  Score=149.41  Aligned_cols=117  Identities=17%  Similarity=0.053  Sum_probs=95.6

Q ss_pred             CceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeecccccccee
Q 028854           11 WMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNI   90 (202)
Q Consensus        11 g~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~FGaNy~   90 (202)
                      +.|+..++|.+|+..++|.|...+..   ..-++|+||||+|||||+.+..  .-.||++||..|.+++++||.|+++ -
T Consensus         9 ~~p~L~~~E~il~~~~~V~Ly~g~~k---~~~k~G~l~LTshRli~~d~~~--~~~s~~lpl~~v~~~e~~~~~f~~s-~   82 (140)
T 2hth_B            9 TSGLLEINETLVIQQRGVRIYDGEEK---IKFDAGTLLLSTHRLIWRDQKN--HECCMAILLSQIVFIEEQAAGIGKS-A   82 (140)
T ss_dssp             CCSCCCTTCCEEEEEEEEEEEETTCS---SCCCCEEEEEESSEEEEEETTC--CSCCEEEEGGGEEEEEEECCTTSSC-C
T ss_pred             CCCccCCCceEEEEcCCEEEecCCCC---CCCcCCEEEEecCEEEEecCCC--CceEEEEEhHHeeeeeeeccccccC-c
Confidence            57888999999999999999996533   3448999999999999999863  4499999999999999999999876 5


Q ss_pred             eEEEEecCC--C--CCCCCCCcceEEEEEEccCCeechHHHHHHHHH
Q 028854           91 SGFVEPVIP--E--NEHRALYSTHSFKILFKEGGCGTFVPLFLNLIS  133 (202)
Q Consensus        91 ~g~V~p~~~--g--g~~~g~~~~~~~kl~F~~GG~~eF~~~f~~l~~  133 (202)
                      +.++...+.  +  .+|.+|.+...+||.|+.||+.||.++|.+++.
T Consensus        83 Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~al~  129 (140)
T 2hth_B           83 KIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMT  129 (140)
T ss_dssp             EEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHHHHH
T ss_pred             eEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHHHHH
Confidence            555554431  1  123358899999999999999999888866653

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=97.62  E-value=7.9e-06  Score=77.59  Aligned_cols=76  Identities=12%  Similarity=0.193  Sum_probs=0.0

Q ss_pred             cCCCCceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeecccc
Q 028854            7 LFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIF   85 (202)
Q Consensus         7 l~~~g~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~F   85 (202)
                      ++..+.|+.+++|.+|+..++|-|---+  .....-.+|++|||+||||||... ...=.|+++||..|...++..-.|
T Consensus         9 ~t~s~rp~L~~~E~~l~vqd~VgLY~Gk--~Ki~~~q~G~~yLTShRiiyvD~~-~p~~~s~~l~L~~I~~~e~~agfl   84 (566)
T 1w7p_D            9 TTSSGQPLLREGEKDIFIDQSVGLYHGK--SKILQRQRGRIFLTSQRIIYIDDA-KPTQNSLGLELDDLAYVNYSSGFL   84 (566)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             ccccCCcccCCCceEEEeecccccccCC--cCCccccCceEEEEeeeEEEecCC-CCcceEEEEEhHHcceeeeeeccc
Confidence            5677899999999999999999885432  012345789999999999999886 334479999999999888866554

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=96.86  E-value=0.0013  Score=62.06  Aligned_cols=62  Identities=19%  Similarity=0.182  Sum_probs=46.8

Q ss_pred             ceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCe
Q 028854           12 MPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEK   79 (202)
Q Consensus        12 ~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~   79 (202)
                      .+..||||.|+...++|.+.-.     ..+...|+|||||+||||++... +.-.-+++||.+|...+
T Consensus         6 ~~~lLpGE~i~~~~~~V~~~~~-----~~~~~~GtL~lTn~rLiF~~~~~-~~~~~~~iPL~~I~~ve   67 (528)
T 1zsq_A            6 EPPLLPGENIKDMAKDVTYICP-----FTGAVRGTLTVTNYRLYFKSMER-DPPFVLDASLGVINRVE   67 (528)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEET-----TTEEEEEEEEEESSEEEEEESSS-SSCEEEEEEGGGEEEEE
T ss_pred             CCccCCCCeEEEecCCEEEeCC-----CCCceeEEEEEECCEEEEEccCC-CccEEEEeeccceEEEE
Confidence            4567999999998888776321     23578999999999999999752 22234789999888655

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=96.65  E-value=0.0021  Score=61.92  Aligned_cols=62  Identities=19%  Similarity=0.176  Sum_probs=46.6

Q ss_pred             ceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCe
Q 028854           12 MPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEK   79 (202)
Q Consensus        12 ~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~   79 (202)
                      .+-.||||.++...++|.+.-.     ..+...|+|||||+||||++.. .+.-.-+++||.+|...+
T Consensus        78 ~~~LLPGE~v~~~~~~V~~~~p-----~~~~~~GtL~lTnyrLiF~~~~-~~~~~~~~IPL~~I~~Ie  139 (657)
T 1lw3_A           78 EPPLLPGENIKDMAKDVTYICP-----FTGAVRGTLTVTNYRLYFKSME-RDPPFVLDASLGVINRVE  139 (657)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEET-----TTEEEEEEEEEESSEEEEEESS-SSSCEEEEEEGGGEEEEE
T ss_pred             CCccCCCeeEEEEeCCEEEecC-----CCCceeEEEEEECCEEEEEecC-CCcceEEEecccceEEEE
Confidence            4567999999998888875321     2356889999999999999975 232334789998887654

>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}

Probab=95.17  E-value=0.021  Score=46.46  Aligned_cols=56  Identities=16%  Similarity=0.243  Sum_probs=33.9

Q ss_pred             ceeeCCC--cEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccc
Q 028854           12 MPVPFTN--ELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIH   76 (202)
Q Consensus        12 ~pl~~~~--E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~   76 (202)
                      ..++-|.  |-+++.-.+|++.+..     +.-..|+||||+.||++++.+ +   +.|++|+..|.
T Consensus        14 ~~~~~p~~~E~v~~~~~~v~~vl~~-----~~~g~GtLyVt~~~l~W~~~~-~---~G~sI~YpsIs   71 (171)
T 1zyi_A           14 KSFPPPGSAEGLRQQQPETEAVLNG-----KGLGTGTLYIAESRLSWLDGS-G---LGFSLEYPTIS   71 (171)
T ss_dssp             -------------CBCSSEEEEBTT-----BCCCEEEEEEETTEEEEEETT-T---EEEEESSCCCS
T ss_pred             ccCCCCCCccceEEEcCCEEEEECC-----CccCceEEEEEcCEEEEEcCC-C---cEEEeecCeEE
Confidence            3455677  8888888899998853     122579999999999999974 2   56777775554

>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*

Probab=92.54  E-value=0.3  Score=37.80  Aligned_cols=56  Identities=16%  Similarity=0.204  Sum_probs=39.2

Q ss_pred             ceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCC-C-CceeeecccccccccCeeec
Q 028854           12 MPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKP-V-GNFVAFDMPLLYIHDEKFNQ   82 (202)
Q Consensus        12 ~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~-~-~~f~SFs~Pl~~i~d~~~~Q   82 (202)
                      .++.++||.|....+.               .+..+..||+|||++.++. + ..-.=.|+|+..|....++.
T Consensus        25 ~~~L~~gE~I~~ayk~---------------iRD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siET   82 (126)
T 3hsa_A           25 SPILGDNEELQLAYXM---------------VRDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVET   82 (126)
T ss_dssp             GGGSCTTCCEEEEEEC---------------SSEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEE
T ss_pred             HHhcCCCCEEEEEehh---------------cCceEEEccchheEEecCcCcccceEEEEeccceeeEEEEec
Confidence            5678888888775432               2256677999999999762 2 24445678999988766653

>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B

Probab=84.32  E-value=5.5  Score=29.89  Aligned_cols=62  Identities=19%  Similarity=0.362  Sum_probs=40.5

Q ss_pred             ccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeeccccccceeeEEEEecCCCCCCCCCCcceEEEEEEcc
Q 028854           39 NQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKE  118 (202)
Q Consensus        39 ~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~FGaNy~~g~V~p~~~gg~~~g~~~~~~~kl~F~~  118 (202)
                      ...+++|++||+.-||...+...  +=..++.++..|.+-++              -|   .|.     ..+.+||..++
T Consensus        16 ~yKK~dGtL~l~~d~i~W~p~~~--~~~~vs~~~~~I~~qq~--------------SP---~~k-----~KVqLqi~l~~   71 (108)
T 1pfj_A           16 RQKKQDGALYLMAERIAWAPEGK--DRFTISHMYADIKCQKI--------------SP---EGK-----AKIQLQLVLHA   71 (108)
T ss_dssp             BCSSCBCEEEEETTEEEEECSSS--SSCSEEEETTTCCCEEE--------------CC---SSS-----SSCEEEEECSS
T ss_pred             eeecCCceEEEEcceEEEccCCC--CCceEEEehhhhhccee--------------CC---CCC-----ccEEEEEEEeC
Confidence            44567799999999999999653  32445557777775332              22   221     34677777777


Q ss_pred             CCeech
Q 028854          119 GGCGTF  124 (202)
Q Consensus       119 GG~~eF  124 (202)
                      |+...|
T Consensus        72 ~~~~~F   77 (108)
T 1pfj_A           72 GDTTNF   77 (108)
T ss_dssp             SCEEEE
T ss_pred             CCceEE
Confidence            776665

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=83.80  E-value=0.58  Score=43.83  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=24.6

Q ss_pred             ccccccceEEeeccEEEEEeCCCCCceeeecccccccccC
Q 028854           39 NQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDE   78 (202)
Q Consensus        39 ~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~   78 (202)
                      ......|+|||||+||||++...+    -..+|+..|...
T Consensus        21 ~~~~~~GtL~lTn~~LiF~~~~~~----e~wi~~~~I~~V   56 (512)
T 2yf0_A           21 SNKSLTGTLYLTATHLLFIDSHQK----ETWILHHHIASV   56 (512)
T ss_dssp             ---CCEEEEEECSSEEEEEESSSC----EEEEEGGGEEEE
T ss_pred             CCCceeEEEEEECCEEEEeCCCCC----ceEecccceeEE
Confidence            467889999999999999995422    245666666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d2hthb1	129	b.55.1.12 (B:3-131) Vacuolar protein sorting prote	3e-15
d2caya1	130	b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sort	2e-11

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 3e-15
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 8/119 (6%)

Query: 18  NELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHD 77
           NE  V+ + GV  +  +          GT+ LS  R+++   K   +     + L  I  
Sbjct: 12  NETLVIQQRGVRIYDGE---EKIKFDAGTLLLSTHRLIWRDQKN--HECCMAILLSQIVF 66

Query: 78  EKFNQPIFHCNNISGFVEPVIPENEHRALYSTHS---FKILFKEGGCGTFVPLFLNLIS 133
            +        +          P N+    + +      K+ FKE G   F       ++
Sbjct: 67  IEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMT 125

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 12/120 (10%), Positives = 39/120 (32%), Gaps = 12/120 (10%)

Query: 6   QLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNF 65
           +   +  P+    E  +     V  +  K     + +  G ++L++ R++++        
Sbjct: 8   ETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQR--GRIFLTSQRIIYI-DDAKPTQ 64

Query: 66  VAFDMPLLYIHDEKFNQPIFHCN-NISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTF 124
            +  + L  +    ++      +  +  F +      E          ++ F++     F
Sbjct: 65  NSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSSTE--------FVQLSFRKSDGVLF 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	99.91
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	99.9
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	97.76
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	90.85
d3dcxa1	116	Uncharacterized protein Shew0819 {Shewanella loihi	88.34

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.2e-24  Score=166.90  Aligned_cols=116  Identities=18%  Similarity=0.105  Sum_probs=92.2

Q ss_pred             eeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeeccccccceeeE
Q 028854           13 PVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFHCNNISG   92 (202)
Q Consensus        13 pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~FGaNy~~g   92 (202)
                      .+..++|.+|+..++|.|.--+  . ...-++|++|||||||||+.++  +..+||++||.+|.+++++||+||+|.+..
T Consensus         7 ~ll~~~E~~l~~~~~V~lydG~--~-k~~~~~G~l~LTthRli~~~~~--~~~~s~~lpl~~i~~~e~~~~~fg~s~ki~   81 (129)
T d2hthb1           7 GLLEINETLVIQQRGVRIYDGE--E-KIKFDAGTLLLSTHRLIWRDQK--NHECCMAILLSQIVFIEEQAAGIGKSAKIV   81 (129)
T ss_dssp             SCCCTTCCEEEEEEEEEEEETT--C-SSCCCCEEEEEESSEEEEEETT--CCSCCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred             CCCCCCcEEEEEeCCEEeecCC--C-cccccceEEEEEeceEEEecCC--CCceEEEEEhHHceeeeEEcccccCCceEE
Confidence            4678999999999999995321  1 2233679999999999999976  345899999999999999999999996666


Q ss_pred             EEEecCCCCCCC---CCCcceEEEEEEccCCeechHHHHHHHHH
Q 028854           93 FVEPVIPENEHR---ALYSTHSFKILFKEGGCGTFVPLFLNLIS  133 (202)
Q Consensus        93 ~V~p~~~gg~~~---g~~~~~~~kl~F~~GG~~eF~~~f~~l~~  133 (202)
                      .+...++.+.++   .+.+.+.+||+|++||++||+++|.++++
T Consensus        82 l~l~~~~~~~~~gp~~~s~~~~~KLsFk~GG~~eF~~~l~~al~  125 (129)
T d2hthb1          82 VHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMT  125 (129)
T ss_dssp             EEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHHHHH
T ss_pred             EEEccCCcCCcCCCcCcCCceEEEEEECCCCHHHHHHHHHHHHH
Confidence            553332222232   36678999999999999999999988875

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=6.6e-24  Score=165.65  Aligned_cols=120  Identities=12%  Similarity=0.108  Sum_probs=102.9

Q ss_pred             cCCCCceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCeeeccccc
Q 028854            7 LFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKFNQPIFH   86 (202)
Q Consensus         7 l~~~g~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~~QP~FG   86 (202)
                      ++.+|.|+..+||.+|+.+++|.|...+..  ....++|++|||||||||+++. .+.++||++||.+|.+++++||+|+
T Consensus         9 ~t~sg~p~L~~~E~~l~~qd~V~Ly~g~~k--~~~~~~G~l~LTshRiI~v~~~-~~~~~S~slpL~~i~~~e~~~~~~~   85 (130)
T d2caya1           9 TTSSGQPLLREGEKDIFIDQSVGLYHGKSK--ILQRQRGRIFLTSQRIIYIDDA-KPTQNSLGLELDDLAYVNYSSGFLT   85 (130)
T ss_dssp             BCTTSCBCCCTTCCEEEEEEEEEEEETTEE--CTTCSSEEEEEESSEEEEEESS-CHHHHCEEEEGGGEEEEEEECSSSS
T ss_pred             cccCCCeEccCCeEEEEEeCCEEEEECCcc--CccccCceEEEEeeEEEEecCC-CCceeEEEeEhhheeEeEEEccccC
Confidence            788999999999999999999999986311  1134789999999999999976 6789999999999999999999999


Q ss_pred             cceeeEEEEecCCCCCCCCCCcceEEEEEEccCCeechHHHHHHHHHHHH
Q 028854           87 CNNISGFVEPVIPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSVR  136 (202)
Q Consensus        87 aNy~~g~V~p~~~gg~~~g~~~~~~~kl~F~~GG~~eF~~~f~~l~~~~~  136 (202)
                      ++ =+.++.+.++      +.+...+||+|++||+.+|.+++.+.++++.
T Consensus        86 ss-~KI~l~l~~~------~~~~~~vklsFr~gg~~~F~~~~~~~~~~~~  128 (130)
T d2caya1          86 RS-PRLILFFKDP------SSSTEFVQLSFRKSDGVLFSQATERALENIL  128 (130)
T ss_dssp             SS-CEEEEEESSC------SSTTCCEEEEESSSCCHHHHHHHHHHHHHHH
T ss_pred             CC-CeEEEEeCCC------CCCCCEEEEEEcCCChHHHHHHHHHHHHHHh
Confidence            75 4677788753      4456789999999999999999999987653

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.9e-05  Score=59.24  Aligned_cols=61  Identities=21%  Similarity=0.246  Sum_probs=44.8

Q ss_pred             eeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCCCCceeeecccccccccCe
Q 028854           13 PVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEK   79 (202)
Q Consensus        13 pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~   79 (202)
                      |-.+|||.++..-.+|.. +.  |  ..+..+|+|||||+||||+... .+.-.=+++|+.+|...+
T Consensus         3 ~~llpGE~i~~~~~~V~~-~~--p--~~~~~~G~L~lTnyrliF~~~~-~~~~~~~~ipl~~I~~v~   63 (125)
T d1zsqa1           3 PPLLPGENIKDMAKDVTY-IC--P--FTGAVRGTLTVTNYRLYFKSME-RDPPFVLDASLGVINRVE   63 (125)
T ss_dssp             CCCCTTCCEEEEEEEEEE-EE--T--TTEEEEEEEEEESSEEEEEESS-SSSCEEEEEEGGGEEEEE
T ss_pred             CCcCCCcEEEEeeccEEE-Ec--c--CCCccceEEEEEeeEEEEEcCC-CCccEEEEeccceeeeee
Confidence            456899999987766643 21  1  3356789999999999999875 333345789999998665

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.27  Score=35.25  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=30.2

Q ss_pred             ccccceEEeeccEEEEEeCCCCCceeeecccccccccCee
Q 028854           41 VKARGTVYLSNIRVVFVASKPVGNFVAFDMPLLYIHDEKF   80 (202)
Q Consensus        41 ~~~~G~~yLTn~RlVFv~~~~~~~f~SFs~Pl~~i~d~~~   80 (202)
                      .+..|++|||..||++.+.. .+.+ ++++++..|...++
T Consensus        18 KK~~GtL~l~~d~l~W~p~~-~~~~-~v~~~~~~I~~~q~   55 (108)
T d2rnrb1          18 KKQDGALYLMAERIAWAPEG-KDRF-TISHMYADIKCQKI   55 (108)
T ss_dssp             SSCEEEEEECSSEEEEEESS-CSSC-SEEEETTTEEEEEE
T ss_pred             ecCCcEEEEEcCeEEEEcCC-CCCc-eEEEEhhhhhceec
Confidence            46889999999999999976 4443 48899988875544

>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: BPHL domain
domain: Uncharacterized protein Shew0819
species: Shewanella loihica [TaxId: 359303]

Probab=88.34  E-value=0.15  Score=37.11  Aligned_cols=74  Identities=18%  Similarity=0.200  Sum_probs=47.1

Q ss_pred             ceeeCCCcEEEEEeCcEEEEEccCCCCccccccceEEeeccEEEEEeCCC-CC-ceeeecccccccccCeeeccccccce
Q 028854           12 MPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASKP-VG-NFVAFDMPLLYIHDEKFNQPIFHCNN   89 (202)
Q Consensus        12 ~pl~~~~E~ill~r~~v~l~~~~~p~~~~~~~~G~~yLTn~RlVFv~~~~-~~-~f~SFs~Pl~~i~d~~~~QP~FGaNy   89 (202)
                      .++.++||.|+...+              ...++.+ .||+|||++..+. ++ .-.=.|+|+..|....++-       
T Consensus        16 ~~lL~~gE~i~~~yk--------------~~rD~~~-FTnkRlI~vD~qg~tGkK~~~~siPY~~I~~~siEt-------   73 (116)
T d3dcxa1          16 GPIMGDNEQLALAYR--------------VIRDMFV-FTNKRLILIDKQGVTGKKVSYHSVPYKAITHFEVET-------   73 (116)
T ss_dssp             GGGSCTTCCEEEEEE--------------ETTEEEE-EESSEEEEEEEESSSCCEEEEEEEEGGGEEEEEEEC-------
T ss_pred             HHhcCCCCEEEEEEE--------------eecceEE-EecceEEEEeccccccceEEEEEEehhHeEEEEEEe-------
Confidence            567788888876542              2234555 4999999999642 33 3444578999888555532       


Q ss_pred             eeEEEEecCCCCCCCCCCcceEEEEEEccCC
Q 028854           90 ISGFVEPVIPENEHRALYSTHSFKILFKEGG  120 (202)
Q Consensus        90 ~~g~V~p~~~gg~~~g~~~~~~~kl~F~~GG  120 (202)
                             +  |    -+--.+++|||...++
T Consensus        74 -------A--G----tfD~DsElki~~~~~~   91 (116)
T d3dcxa1          74 -------A--G----TFDMDAELKLWISGQK   91 (116)
T ss_dssp             -------C--S----STTSCEEEEEEETTCS
T ss_pred             -------C--c----cccCcccEEEEEecCc
Confidence                   1  2    2344578888887554