Citrus Sinensis ID: 028857

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MSSVFSSKSNHMYLNKSKAQEQKSRKAQMGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSMV
Secondary Structure (PSIPRED)
ccccccccccccEEcHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHccHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cccEEEccccccEccccHHHHHHHHHHHHcHHEEEEccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccHHHHHccccccccHHHHHcccccccccccHHHHHHHccHHHHHHHHHcccccccccHHHHccccEEEEEcccccEEEEHHHEEcccccccEEccccccccEEEEc
Coil and Loop (DISEMBL)
mssvfssksnhmylNKSKAQEQKSRKaqmgfnvlktspvscssrtfSSVLsnlnfihsptttrLFTNRLNslapsllklkpltvtgtgcisssgfyrslrFEQNKRSFRGGVVLAVAsgpasvnksEEEWRAILSPEQFRILRQKateypgtgeydkhfeegiyncsacgtplyksttkfnsgcgwpafyeglpgaincsmv
Flexible Loop (DISEMBL)
mssvfssksnhmylnKSKAQEQKSRKAQMGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASgpasvnkseeEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPgaincsmv
Low Complexity Region (SEG)
MSSVFSSKSNHMYLNKSKAQEQKSRKAQMGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRlnslapsllklkplTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSMV
Disordered region (IsUnstruct)
****************************************C*SRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVAS**********EWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINC***
Disordered Region (DISOPRED)
*********************************LKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLF*************LKPLTVTGTGCISSSGFY********************************EWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCS**
Disordered Region (DISEMBL)
**************************AQMGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVAS*********EEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSMV
Disordered Region (DISPRO)
***************K*K*QEQKSRKAQMGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSMV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSVFSSKSNHMYLNKSKAQEQKSRKAQMGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9C5C8	202	Peptide methionine sulfox	no	no	0.460	0.460	0.755	2e-38
Q9ZS91	139	Peptide methionine sulfox	no	no	0.410	0.597	0.783	4e-35
Q6AUK5	229	Peptide methionine sulfox	yes	no	0.371	0.327	0.84	5e-34
Q9M0Z5	139	Peptide methionine sulfox	no	no	0.376	0.546	0.802	1e-32
Q9M0Z6	176	Peptide methionine sulfox	no	no	0.475	0.545	0.659	1e-32
Q10L32	136	Peptide methionine sulfox	no	no	0.420	0.625	0.694	4e-32
Q84JT6	143	Peptide methionine sulfox	no	no	0.415	0.587	0.642	4e-29
Q8GWF4	153	Peptide methionine sulfox	no	no	0.376	0.496	0.684	1e-27
O49707	143	Peptide methionine sulfox	no	no	0.430	0.608	0.597	2e-27
Q8VY86	144	Peptide methionine sulfox	no	no	0.386	0.541	0.653	3e-27

>sp|Q9C5C8|MSRB2_ARATH Peptide methionine sulfoxide reductase B2, chloroplastic OS=Arabidopsis thaliana GN=MSRB2 PE=1 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 83/94 (88%), Gaps = 1/94 (1%)

Query: 105 KRSFRGGVVLAV-ASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGI 163
           +R F GG ++A+ +S P SVNK EEEWRAILSPEQFRILRQK TEYPGTGEY+K F++GI
Sbjct: 54  RRGFHGGRIVAMGSSAPESVNKPEEEWRAILSPEQFRILRQKGTEYPGTGEYNKVFDDGI 113

Query: 164 YNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAI 197
           Y C+ CGTPLYKSTTKF+SGCGWPAF++GLPGAI
Sbjct: 114 YCCAGCGTPLYKSTTKFDSGCGWPAFFDGLPGAI 147

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Specifically reduces the MetSO R-enantiomer. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. May play an essential function in association with MSRB1 in maintaining vegetative growth during environmental constraints, through the preservation of photosynthetic antennae. MSRB1 and MSRB2 account for most of the leaf peptide MSR capacity.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q9ZS91|MSRB5_ARATH Peptide methionine sulfoxide reductase B5 OS=Arabidopsis thaliana GN=MSRB5 PE=2 SV=1

 Score =  147 bits (371), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 73/83 (87%)

Query: 116 VASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYK 175
           +A+ P  V K+EEEWRA+LSPEQFRILRQK TE PGTGEYDK FEEGI++C  C TPLYK
Sbjct: 1   MAASPLVVQKTEEEWRAVLSPEQFRILRQKGTEKPGTGEYDKFFEEGIFDCVGCKTPLYK 60

Query: 176 STTKFNSGCGWPAFYEGLPGAIN 198
           STTKF+SGCGWPAF+EGLPGAIN
Sbjct: 61  STTKFDSGCGWPAFFEGLPGAIN 83

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q6AUK5|MSRB3_ORYSJ Peptide methionine sulfoxide reductase B3, chloroplastic OS=Oryza sativa subsp. japonica GN=MSRB3 PE=2 SV=1

 Score =  144 bits (362), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 63/75 (84%), Positives = 66/75 (88%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           V KSEEEW AILSPEQFRILR K TEYPGTGEYDK F EG+Y C+ CGTPLYKS+TKFNS
Sbjct: 98  VQKSEEEWEAILSPEQFRILRLKGTEYPGTGEYDKLFAEGVYECAGCGTPLYKSSTKFNS 157

Query: 183 GCGWPAFYEGLPGAI 197
           GCGWPAFYEG PGAI
Sbjct: 158 GCGWPAFYEGFPGAI 172

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9M0Z5|MSRB4_ARATH Peptide methionine sulfoxide reductase B4 OS=Arabidopsis thaliana GN=MSRB4 PE=2 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           V K+EEEWRA+LSPEQFRILRQK TE PGT EYDK FEEGI++C  C TPLYKSTTKF++
Sbjct: 8   VKKTEEEWRAVLSPEQFRILRQKGTETPGTEEYDKFFEEGIFSCIGCKTPLYKSTTKFDA 67

Query: 183 GCGWPAFYEGLPGAIN 198
           GCGWPAF+EGLPGAIN
Sbjct: 68  GCGWPAFFEGLPGAIN 83

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9M0Z6|MSRB3_ARATH Peptide methionine sulfoxide reductase B3 OS=Arabidopsis thaliana GN=MSRB3 PE=2 SV=2

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 102 EQNKRSFRGGVVLAVA-SGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFE 160
           E +      GV   VA + P SV K +EEWRAILSPEQFRILRQK TEYPGTGEY    +
Sbjct: 25  ESDSICLSSGVASTVAMAAPGSVQKGDEEWRAILSPEQFRILRQKGTEYPGTGEYVNFDK 84

Query: 161 EGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAI 197
           EG+Y C  C  PLYKSTTKFN+GCGWPAF+EG+PGAI
Sbjct: 85  EGVYGCVGCNAPLYKSTTKFNAGCGWPAFFEGIPGAI 121

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. Involved in cold tolerance. Eliminates MetSO and reactive oxygen species that accumulate at the ER during cold acclimation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q10L32|MSRB5_ORYSJ Peptide methionine sulfoxide reductase B5 OS=Oryza sativa subsp. japonica GN=MSRB5 PE=2 SV=1

 Score =  137 bits (346), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 72/85 (84%)

Query: 114 LAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPL 173
           +A +   +   +S+EEWRA+LSPEQFRILR K TE PGTGEY+K + +G+YNC+ CGTPL
Sbjct: 1   MASSGDSSGKQRSDEEWRAVLSPEQFRILRLKGTELPGTGEYNKFYGDGVYNCAGCGTPL 60

Query: 174 YKSTTKFNSGCGWPAFYEGLPGAIN 198
           YKSTTKF+SGCGWPAF+EGLPGAIN
Sbjct: 61  YKSTTKFDSGCGWPAFFEGLPGAIN 85

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q84JT6|MSRB9_ARATH Peptide methionine sulfoxide reductase B9 OS=Arabidopsis thaliana GN=MSRB9 PE=2 SV=1

 Score =  127 bits (320), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 68/84 (80%)

Query: 115 AVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLY 174
           AVA    SV K +++WRAILSPEQFR+LR+K TE  G GEY K F++GIY+C+ C TPLY
Sbjct: 7   AVAPSTGSVQKKDQDWRAILSPEQFRVLREKGTENRGKGEYTKLFDDGIYSCAGCATPLY 66

Query: 175 KSTTKFNSGCGWPAFYEGLPGAIN 198
           KSTTKF+SGCGWP+F++ +PGAI 
Sbjct: 67  KSTTKFDSGCGWPSFFDAIPGAIK 90

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q8GWF4|MSRB6_ARATH Peptide methionine sulfoxide reductase B6 OS=Arabidopsis thaliana GN=MSRB6 PE=2 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 63/76 (82%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           + KS EEWR +LSPEQF+ILR+K+ E  G+GEY K FEEGIY C  CG P+YKSTTKF+S
Sbjct: 24  IKKSNEEWRTVLSPEQFKILREKSIEKRGSGEYVKLFEEGIYCCVGCGNPVYKSTTKFDS 83

Query: 183 GCGWPAFYEGLPGAIN 198
           GCGWPAF++ +PGAIN
Sbjct: 84  GCGWPAFFDAIPGAIN 99

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|O49707|MSRB8_ARATH Peptide methionine sulfoxide reductase B8 OS=Arabidopsis thaliana GN=MSRB8 PE=2 SV=1

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 64/87 (73%)

Query: 112 VVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGT 171
           +  A      S  K +EEWRA+LSPEQFR+LR K T+  G GE+ K FEEG Y+C+ CGT
Sbjct: 3   MTAAAVPSSGSFQKQDEEWRAVLSPEQFRVLRLKGTDKRGKGEFTKKFEEGTYSCAGCGT 62

Query: 172 PLYKSTTKFNSGCGWPAFYEGLPGAIN 198
            LYKSTTKF+SGCGWPAF++ +PGAI 
Sbjct: 63  ALYKSTTKFDSGCGWPAFFDAIPGAIK 89

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q8VY86|MSRB7_ARATH Peptide methionine sulfoxide reductase B7 OS=Arabidopsis thaliana GN=MSRB7 PE=2 SV=1

 Score =  121 bits (304), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 62/78 (79%)

Query: 121 ASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKF 180
            S  K +EEWRA+LSPEQFR+LR K T+  G GE+ K FEEG Y+C+ CGT LYKSTTKF
Sbjct: 13  GSFQKQDEEWRAVLSPEQFRVLRLKGTDKRGKGEFTKKFEEGTYSCAGCGTALYKSTTKF 72

Query: 181 NSGCGWPAFYEGLPGAIN 198
           +SGCGWPAF++ +PGAI 
Sbjct: 73  DSGCGWPAFFDAIPGAIK 90

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
388515879	196	unknown [Lotus japonicus]	0.688	0.709	0.532	1e-40
357476107	189	Methionine-R-sulfoxide reductase B1 prot	0.5	0.534	0.754	3e-40
156105710	201	chloroplast methionine sulfoxide reducta	0.737	0.741	0.541	3e-40
388513129	189	unknown [Medicago truncatula]	0.5	0.534	0.754	4e-40
255554535	212	methionine sulfoxide reductase, putative	0.762	0.726	0.532	2e-39
255644657	202	unknown [Glycine max]	0.455	0.455	0.776	7e-39
363808364	202	uncharacterized protein LOC100799071 [Gl	0.455	0.455	0.776	7e-39
359496244	197	PREDICTED: peptide methionine sulfoxide	0.628	0.644	0.581	9e-39
356554850	160	PREDICTED: peptide methionine sulfoxide	0.633	0.8	0.622	2e-38
356554848	204	PREDICTED: peptide methionine sulfoxide	0.633	0.627	0.622	2e-38

>gi|388515879|gb|AFK46001.1| unknown [Lotus japonicus]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/167 (53%), Positives = 112/167 (67%), Gaps = 28/167 (16%)

Query: 31  FNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCI 90
            N+++T+P+  S++   S+ SNL   HS +   +F        PS   + P ++      
Sbjct: 5   LNIVRTTPLCVSTK---SIFSNLLLSHSTSHFTVF--------PSNPIITPSSI------ 47

Query: 91  SSSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYP 150
                  S+R +Q KR FRGGVV+A+A+      KSE+EWRA+LSPEQFRILRQK TEYP
Sbjct: 48  -------SIRHQQRKRGFRGGVVVAMAA----PQKSEDEWRAVLSPEQFRILRQKGTEYP 96

Query: 151 GTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAI 197
           GTGEYDK F EG+Y C+ C TPLY+STTKFNSGCGWPAFYEGLPGAI
Sbjct: 97  GTGEYDKFFAEGVYRCAGCETPLYRSTTKFNSGCGWPAFYEGLPGAI 143

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476107|ref|XP_003608339.1| Methionine-R-sulfoxide reductase B1 protein [Medicago truncatula] gi|355509394|gb|AES90536.1| Methionine-R-sulfoxide reductase B1 protein [Medicago truncatula]

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 87/102 (85%), Gaps = 1/102 (0%)

Query: 98  SLRFEQNKRSFRGGVV-LAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYD 156
           ++   Q KR FRGG+V ++ A  P SV KSEEEW+AILSPEQFRILRQK TEYPGTGEYD
Sbjct: 36  TISIRQPKRGFRGGIVAMSAAPTPGSVQKSEEEWQAILSPEQFRILRQKGTEYPGTGEYD 95

Query: 157 KHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAIN 198
           K F EG+Y+C+ CGTPLYKSTTKFNSGCGWPAFYEG+PGAIN
Sbjct: 96  KFFGEGVYSCAGCGTPLYKSTTKFNSGCGWPAFYEGVPGAIN 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156105710|gb|ABU49226.1| chloroplast methionine sulfoxide reductase B2 precursor [Nicotiana tabacum]

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 108/170 (63%), Gaps = 21/170 (12%)

Query: 29  MGFNVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTG 88
           MG  +LK SP + SS     + +   F+     T +  ++    + SL            
Sbjct: 1   MGSQILKISPFASSS-----IFNATPFLRFQAKTVVTISKTQFRSNSL------------ 43

Query: 89  CISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATE 148
            +SSSGF   +    NKR   GGVV   ++   SV KSEEEWRAILSPEQFRILRQK TE
Sbjct: 44  -VSSSGF---VPLSNNKRGLSGGVVAMASATGGSVQKSEEEWRAILSPEQFRILRQKGTE 99

Query: 149 YPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAIN 198
           YPGTGEYDK + EGIY C+ CGTPLYKSTTKFNSGCGWPAF+EGLPGAIN
Sbjct: 100 YPGTGEYDKFYGEGIYQCAGCGTPLYKSTTKFNSGCGWPAFFEGLPGAIN 149

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513129|gb|AFK44626.1| unknown [Medicago truncatula]

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 86/102 (84%), Gaps = 1/102 (0%)

Query: 98  SLRFEQNKRSFRGGVV-LAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYD 156
           ++   Q KR FRGG+V ++ A  P SV KSEEEW+AILSPEQFRILRQK TEYPGTGEYD
Sbjct: 36  TISIRQPKRGFRGGIVAMSAAPTPGSVQKSEEEWQAILSPEQFRILRQKGTEYPGTGEYD 95

Query: 157 KHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAIN 198
           K F EG+Y C+ CGTPLYKSTTKFNSGCGWPAFYEG+PGAIN
Sbjct: 96  KFFGEGVYGCAGCGTPLYKSTTKFNSGCGWPAFYEGVPGAIN 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554535|ref|XP_002518306.1| methionine sulfoxide reductase, putative [Ricinus communis] gi|223542526|gb|EEF44066.1| methionine sulfoxide reductase, putative [Ricinus communis]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/167 (53%), Positives = 111/167 (66%), Gaps = 13/167 (7%)

Query: 32  NVLKTSPVSCSSRTFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCIS 91
           N+LKTSP S +    ++          PT +RL +   +S   +  ++ P  +  T  +S
Sbjct: 7   NILKTSPFSSTKTILATA--------KPTFSRLLSPLPDSFNKTRFRVSPPKLI-TNSVS 57

Query: 92  SSGFYRSLRFEQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPG 151
            S F  S+ ++   R+ R   +   A  P S+ K EEEWRAILSPEQFRILRQK TEYPG
Sbjct: 58  VSVFTGSVSWKS--RTCRARFIAMAA--PGSLQKPEEEWRAILSPEQFRILRQKGTEYPG 113

Query: 152 TGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAIN 198
           TGEYDK +EEG+YNC+ CGTPLY+STTKFNSGCGWPAFYEGLPGAIN
Sbjct: 114 TGEYDKFYEEGVYNCAGCGTPLYRSTTKFNSGCGWPAFYEGLPGAIN 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644657|gb|ACU22831.1| unknown [Glycine max]

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 83/94 (88%), Gaps = 2/94 (2%)

Query: 105 KRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIY 164
           KR FRGG+V   A+G  S+ KSEEEWRA+LSPEQFRILRQK TE+PGTGEYDK F+EG+Y
Sbjct: 59  KRGFRGGIVAMAAAG--SLRKSEEEWRAVLSPEQFRILRQKGTEFPGTGEYDKFFDEGVY 116

Query: 165 NCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAIN 198
           NC+ CGTPLY+S TKFNSGCGWPAFYEG+PGAIN
Sbjct: 117 NCAGCGTPLYRSLTKFNSGCGWPAFYEGIPGAIN 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808364|ref|NP_001242255.1| uncharacterized protein LOC100799071 [Glycine max] gi|255628539|gb|ACU14614.1| unknown [Glycine max]

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 83/94 (88%), Gaps = 2/94 (2%)

Query: 105 KRSFRGGVVLAVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIY 164
           KR FRGG+V   A+G  S+ KSEEEWRA+LSPEQFRILRQK TE+PGTGEYDK F+EG+Y
Sbjct: 59  KRGFRGGIVAMAAAG--SLRKSEEEWRAVLSPEQFRILRQKGTEFPGTGEYDKFFDEGVY 116

Query: 165 NCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAIN 198
           NC+ CGTPLY+S TKFNSGCGWPAFYEG+PGAIN
Sbjct: 117 NCAGCGTPLYRSLTKFNSGCGWPAFYEGIPGAIN 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496244|ref|XP_002265129.2| PREDICTED: peptide methionine sulfoxide reductase B3, chloroplastic-like [Vitis vinifera]

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 100/141 (70%), Gaps = 14/141 (9%)

Query: 72  LAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ-----NKRSFRGGVVLAVA--------- 117
           +  ++LKL P + + T     + F + L   Q      K ++ GG+ L++          
Sbjct: 1   MGSNVLKLSPFSFSKTLVFPKTMFSKLLPSPQFTSFSPKTNYAGGLRLSLPRSKRNFVAM 60

Query: 118 SGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKST 177
           +GP SV KS+EEWRA+LSPEQFRILR+K TEYPGTGEYDK FEEG+YNC+ CGTPLYKST
Sbjct: 61  AGPGSVQKSDEEWRAVLSPEQFRILRRKGTEYPGTGEYDKFFEEGVYNCAGCGTPLYKST 120

Query: 178 TKFNSGCGWPAFYEGLPGAIN 198
           TKFNSGCGWPAFYEGLPGAIN
Sbjct: 121 TKFNSGCGWPAFYEGLPGAIN 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554850|ref|XP_003545755.1| PREDICTED: peptide methionine sulfoxide reductase B2, chloroplastic-like isoform 2 [Glycine max]

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/135 (62%), Positives = 100/135 (74%), Gaps = 7/135 (5%)

Query: 64  LFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASV 123
           +F+  L S +PS +   P +VT T    S+  + +L     K  FRGG+V   A  P S+
Sbjct: 23  IFSTLLRS-SPSTI-FPPKSVTPTTLFVSATPFFTL---HPKLGFRGGIVAMAA--PGSL 75

Query: 124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSG 183
            KSEEEWRAILSPEQFRILRQK TE+PGTGEYDK +EEG+YNC+ CGTPLY+S TKFNSG
Sbjct: 76  RKSEEEWRAILSPEQFRILRQKGTEFPGTGEYDKFYEEGVYNCAGCGTPLYRSITKFNSG 135

Query: 184 CGWPAFYEGLPGAIN 198
           CGWPAFYEG+PGAIN
Sbjct: 136 CGWPAFYEGIPGAIN 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554848|ref|XP_003545754.1| PREDICTED: peptide methionine sulfoxide reductase B2, chloroplastic-like isoform 1 [Glycine max]

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/135 (62%), Positives = 100/135 (74%), Gaps = 7/135 (5%)

Query: 64  LFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQNKRSFRGGVVLAVASGPASV 123
           +F+  L S +PS +   P +VT T    S+  + +L     K  FRGG+V   A  P S+
Sbjct: 23  IFSTLLRS-SPSTI-FPPKSVTPTTLFVSATPFFTL---HPKLGFRGGIVAMAA--PGSL 75

Query: 124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSG 183
            KSEEEWRAILSPEQFRILRQK TE+PGTGEYDK +EEG+YNC+ CGTPLY+S TKFNSG
Sbjct: 76  RKSEEEWRAILSPEQFRILRQKGTEFPGTGEYDKFYEEGVYNCAGCGTPLYRSITKFNSG 135

Query: 184 CGWPAFYEGLPGAIN 198
           CGWPAFYEG+PGAIN
Sbjct: 136 CGWPAFYEGIPGAIN 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2141702	202	MSRB2 "methionine sulfoxide re	0.490	0.490	0.73	1.9e-37
TAIR|locus:2138922	139	MSRB5 "methionine sulfoxide re	0.410	0.597	0.783	9.5e-34
TAIR|locus:2138892	176	MSRB3 "methionine sulfoxide re	0.475	0.545	0.659	7.7e-32
TAIR|locus:2138902	139	MSRB4 "methionine sulfoxide re	0.376	0.546	0.802	1.6e-31
TAIR|locus:2141692	143	MSRB9 "methionine sulfoxide re	0.410	0.580	0.650	1.9e-28
TAIR|locus:2138937	153	MSRB6 "methionine sulfoxide re	0.376	0.496	0.684	4.5e-27
TAIR|locus:2141667	144	MSRB7 "methionine sulfoxide re	0.415	0.583	0.627	4.5e-27
TAIR|locus:2141677	143	MSRB8 "methionine sulfoxide re	0.405	0.573	0.650	7.3e-27
DICTYBASE|DDB_G0291145	190	msrB "peptide-methionine (R)-S	0.371	0.394	0.6	2.9e-25
CGD|CAL0003438	147	orf19.3292 [Candida albicans (	0.376	0.517	0.602	3.4e-22

TAIR|locus:2141702 MSRB2 "methionine sulfoxide reductase B 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 73/100 (73%), Positives = 85/100 (85%)

Query:    99 LRFEQNKRSFRGGVVLAV-ASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDK 157
             L F   +R F GG ++A+ +S P SVNK EEEWRAILSPEQFRILRQK TEYPGTGEY+K
Sbjct:    48 LSFPSLRRGFHGGRIVAMGSSAPESVNKPEEEWRAILSPEQFRILRQKGTEYPGTGEYNK 107

Query:   158 HFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAI 197
              F++GIY C+ CGTPLYKSTTKF+SGCGWPAF++GLPGAI
Sbjct:   108 VFDDGIYCCAGCGTPLYKSTTKFDSGCGWPAFFDGLPGAI 147

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2138922 MSRB5 "methionine sulfoxide reductase B5" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 65/83 (78%), Positives = 73/83 (87%)

Query:   116 VASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYK 175
             +A+ P  V K+EEEWRA+LSPEQFRILRQK TE PGTGEYDK FEEGI++C  C TPLYK
Sbjct:     1 MAASPLVVQKTEEEWRAVLSPEQFRILRQKGTEKPGTGEYDKFFEEGIFDCVGCKTPLYK 60

Query:   176 STTKFNSGCGWPAFYEGLPGAIN 198
             STTKF+SGCGWPAF+EGLPGAIN
Sbjct:    61 STTKFDSGCGWPAFFEGLPGAIN 83

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2138892 MSRB3 "methionine sulfoxide reductase B3" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 64/97 (65%), Positives = 72/97 (74%)

Query:   102 EQNKRSFRGGVVLAVA-SGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFE 160
             E +      GV   VA + P SV K +EEWRAILSPEQFRILRQK TEYPGTGEY    +
Sbjct:    25 ESDSICLSSGVASTVAMAAPGSVQKGDEEWRAILSPEQFRILRQKGTEYPGTGEYVNFDK 84

Query:   161 EGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAI 197
             EG+Y C  C  PLYKSTTKFN+GCGWPAF+EG+PGAI
Sbjct:    85 EGVYGCVGCNAPLYKSTTKFNAGCGWPAFFEGIPGAI 121

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0070191 "methionine-R-sulfoxide reductase activity" evidence=IMP

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2138902 MSRB4 "methionine sulfoxide reductase B4" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query:   123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
             V K+EEEWRA+LSPEQFRILRQK TE PGT EYDK FEEGI++C  C TPLYKSTTKF++
Sbjct:     8 VKKTEEEWRAVLSPEQFRILRQKGTETPGTEEYDKFFEEGIFSCIGCKTPLYKSTTKFDA 67

Query:   183 GCGWPAFYEGLPGAIN 198
             GCGWPAF+EGLPGAIN
Sbjct:    68 GCGWPAFFEGLPGAIN 83

GO:0005737 "cytoplasm" evidence=ISM

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2141692 MSRB9 "methionine sulfoxide reductase B9" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 54/83 (65%), Positives = 68/83 (81%)

Query:   115 AVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLY 174
             AVA    SV K +++WRAILSPEQFR+LR+K TE  G GEY K F++GIY+C+ C TPLY
Sbjct:     7 AVAPSTGSVQKKDQDWRAILSPEQFRVLREKGTENRGKGEYTKLFDDGIYSCAGCATPLY 66

Query:   175 KSTTKFNSGCGWPAFYEGLPGAI 197
             KSTTKF+SGCGWP+F++ +PGAI
Sbjct:    67 KSTTKFDSGCGWPSFFDAIPGAI 89

GO:0005737 "cytoplasm" evidence=ISM

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2138937 MSRB6 "methionine sulfoxide reductase B6" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 52/76 (68%), Positives = 63/76 (82%)

Query:   123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
             + KS EEWR +LSPEQF+ILR+K+ E  G+GEY K FEEGIY C  CG P+YKSTTKF+S
Sbjct:    24 IKKSNEEWRTVLSPEQFKILREKSIEKRGSGEYVKLFEEGIYCCVGCGNPVYKSTTKFDS 83

Query:   183 GCGWPAFYEGLPGAIN 198
             GCGWPAF++ +PGAIN
Sbjct:    84 GCGWPAFFDAIPGAIN 99

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2141667 MSRB7 "methionine sulfoxide reductase B7" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query:   114 LAVASGPA--SVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGT 171
             +  A+ PA  S  K +EEWRA+LSPEQFR+LR K T+  G GE+ K FEEG Y+C+ CGT
Sbjct:     4 MTAAAVPATGSFQKQDEEWRAVLSPEQFRVLRLKGTDKRGKGEFTKKFEEGTYSCAGCGT 63

Query:   172 PLYKSTTKFNSGCGWPAFYEGLPGAI 197
              LYKSTTKF+SGCGWPAF++ +PGAI
Sbjct:    64 ALYKSTTKFDSGCGWPAFFDAIPGAI 89

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0000304 "response to singlet oxygen" evidence=IEP

TAIR|locus:2141677 MSRB8 "methionine sulfoxide reductase B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 54/83 (65%), Positives = 65/83 (78%)

Query:   115 AVASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLY 174
             AV S   S  K +EEWRA+LSPEQFR+LR K T+  G GE+ K FEEG Y+C+ CGT LY
Sbjct:     7 AVPSS-GSFQKQDEEWRAVLSPEQFRVLRLKGTDKRGKGEFTKKFEEGTYSCAGCGTALY 65

Query:   175 KSTTKFNSGCGWPAFYEGLPGAI 197
             KSTTKF+SGCGWPAF++ +PGAI
Sbjct:    66 KSTTKFDSGCGWPAFFDAIPGAI 88

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

DICTYBASE|DDB_G0291145 msrB "peptide-methionine (R)-S-oxide reductase" [Dictyostelium discoideum (taxid:44689)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 45/75 (60%), Positives = 64/75 (85%)

Query:   123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
             +N SE+EWR  L+P QF++LR+K TE P +GEY+K++E+G+YNC+AC TPL+KS  KF+S
Sbjct:    61 MNLSEDEWRVKLTPAQFKVLREKGTERPDSGEYNKNYEKGVYNCAACDTPLFKSEHKFSS 120

Query:   183 GCGWPAFYEGLPGAI 197
             GCGWP+FY+ +PGA+
Sbjct:   121 GCGWPSFYDSIPGAL 135

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

CGD|CAL0003438 orf19.3292 [Candida albicans (taxid:5476)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 47/78 (60%), Positives = 57/78 (73%)

Query:   122 SVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKH--FEEGIYNCSACGTPLYKSTTK 179
             +++KS+ EWRAILSPEQFR+LRQ  TE P TGEY      + G Y C+ C  PLYK+ TK
Sbjct:    13 NMSKSDSEWRAILSPEQFRVLRQGGTEAPYTGEYTNTPASDVGYYECAGCKYPLYKANTK 72

Query:   180 FNSGCGWPAFYEGLPGAI 197
             F + CGWPAFYE LPGA+
Sbjct:    73 FKAHCGWPAFYEALPGAV 90

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.4	LOW CONFIDENCE prediction!
4th Layer	1.8.4.12	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.7__2119__AT4G21860.1 annotation not avaliable (197 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam01641	124	pfam01641, SelR, SelR domain	2e-41
PRK00222	142	PRK00222, PRK00222, methionine sulfoxide reductase	5e-39
COG0229	140	COG0229, COG0229, Conserved domain frequently asso	6e-38
TIGR00357	134	TIGR00357, TIGR00357, methionine-R-sulfoxide reduc	6e-31
PRK05550	283	PRK05550, PRK05550, bifunctional methionine sulfox	5e-29
PRK05508	119	PRK05508, PRK05508, methionine sulfoxide reductase	2e-25
PRK14018	521	PRK14018, PRK14018, trifunctional thioredoxin/meth	5e-14

>gnl|CDD|201899 pfam01641, SelR, SelR domain

 Score =  136 bits (344), Expect = 2e-41
 Identities = 47/70 (67%), Positives = 57/70 (81%)

Query: 127 EEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGW 186
           +EEW+A+LSPEQ+R+LR K TE P TGEYD HFEEGIY C  CG PL+ STTKF+SGCGW
Sbjct: 1   DEEWKAVLSPEQYRVLRNKGTEKPFTGEYDDHFEEGIYVCIGCGEPLFSSTTKFDSGCGW 60

Query: 187 PAFYEGLPGA 196
           P+F+E + G 
Sbjct: 61  PSFFEPISGD 70

Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity. Length = 124

>gnl|CDD|234692 PRK00222, PRK00222, methionine sulfoxide reductase B; Provisional

 Score =  130 bits (329), Expect = 5e-39
 Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           + KS+EEW+  L+PEQ+R+ ++  TE P TGEY  + E+GIY C  CG PL+ S TKF+S
Sbjct: 3   IEKSKEEWKKQLTPEQYRVTQEHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSDTKFDS 62

Query: 183 GCGWPAFYEGL-PGAIN 198
           GCGWP+F + +   AI 
Sbjct: 63  GCGWPSFTKPIDEEAIR 79

Length = 142

>gnl|CDD|223307 COG0229, COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

 Score =  127 bits (322), Expect = 6e-38
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 122 SVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFN 181
            +  S+EE +  L+PEQ+R+ +   TE P TGEY  + E+GIY C  CG PL+ S  KF+
Sbjct: 1   YIKPSDEELKEKLTPEQYRVTQNHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSEDKFD 60

Query: 182 SGCGWPAFYEGL-PGAI 197
           SGCGWP+F + + P AI
Sbjct: 61  SGCGWPSFTKPISPDAI 77

Length = 140

>gnl|CDD|129454 TIGR00357, TIGR00357, methionine-R-sulfoxide reductase

 Score =  109 bits (275), Expect = 6e-31
 Identities = 32/67 (47%), Positives = 43/67 (64%)

Query: 125 KSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGC 184
            S+EE +  L+P Q+ + +   TE P T EY  + EEGIY    CG PL+ S  KF+SGC
Sbjct: 2   PSDEELKKKLTPLQYEVTQNAGTEPPFTNEYWDNKEEGIYVDITCGEPLFSSEDKFDSGC 61

Query: 185 GWPAFYE 191
           GWP+FY+
Sbjct: 62  GWPSFYK 68

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested [Protein fate, Protein modification and repair, Cellular processes, Adaptations to atypical conditions]. Length = 134

>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional

 Score =  108 bits (273), Expect = 5e-29
 Identities = 33/64 (51%), Positives = 47/64 (73%)

Query: 134 LSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL 193
           L+P ++R++  K TE P +GEY  H E+G+Y C  CG PL++S  KFNSGCGWP+F + +
Sbjct: 7   LTPFEYRVIEDKGTERPFSGEYYDHDEKGVYLCRRCGAPLFRSEDKFNSGCGWPSFDDEI 66

Query: 194 PGAI 197
           PGA+
Sbjct: 67  PGAV 70

Length = 283

>gnl|CDD|180121 PRK05508, PRK05508, methionine sulfoxide reductase B; Provisional

 Score = 94.8 bits (236), Expect = 2e-25
 Identities = 32/64 (50%), Positives = 45/64 (70%)

Query: 134 LSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL 193
           L+PE+  ++ +K TE P +GEY+  FE+G Y C  CG PLY+S  KF SGCGWP+F + +
Sbjct: 4   LTPEEEAVILRKGTEPPFSGEYNDFFEKGTYVCKQCGAPLYRSEDKFKSGCGWPSFDDEI 63

Query: 194 PGAI 197
            GA+
Sbjct: 64  KGAV 67

Length = 119

>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

 Score = 69.5 bits (170), Expect = 5e-14
 Identities = 28/64 (43%), Positives = 40/64 (62%)

Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
           S+ E +  L+ EQ++I +  ATE   + EYD  F+ GIY     G PL+ S  K++SGCG
Sbjct: 381 SDAELKRTLTEEQYQITQNAATERAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG 440

Query: 186 WPAF 189
           WP+F
Sbjct: 441 WPSF 444

Length = 521

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	100.0
COG0229	140	Conserved domain frequently associated with peptid	100.0
KOG0856	146	consensus Predicted pilin-like transcription facto	100.0
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	100.0
PRK00222	142	methionine sulfoxide reductase B; Provisional	100.0
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	100.0
PRK05508	119	methionine sulfoxide reductase B; Provisional	100.0
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	99.97
COG0225	174	MsrA Peptide methionine sulfoxide reductase [Postt	99.64
PRK14054	172	methionine sulfoxide reductase A; Provisional	99.57
PRK13014	186	methionine sulfoxide reductase A; Provisional	99.54
TIGR00401	149	msrA methionine-S-sulfoxide reductase. This model	99.49
PF01625	155	PMSR: Peptide methionine sulfoxide reductase; Inte	99.49
PRK05528	156	methionine sulfoxide reductase A; Provisional	99.46
PRK00058	213	methionine sulfoxide reductase A; Provisional	99.39
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	99.31
KOG1635	191	consensus Peptide methionine sulfoxide reductase [	99.25

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=100.00  E-value=4.1e-48  Score=366.84  Aligned_cols=149  Identities=25%  Similarity=0.395  Sum_probs=133.6

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcceeeccCCC---
Q 028857           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVASGP---  120 (202)
Q Consensus        47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVlAaap~~---  120 (202)
                      -.||.++|||+|++|+++|+++++.++.  .+.++| +||  |.|+.+||+||+|||   .|||.+|+.+..+.-..   
T Consensus       286 G~qYrs~I~~~~~eq~~~a~~~~~~~~~--~~~~~i-~te--i~~~~~Fy~AE~yHQ~Yl~k~p~~yc~~~~~~~~~~~~  360 (521)
T PRK14018        286 GTQYRSGVYYTDPADKAVIAAALKREQQ--KYQLPL-VVE--NEPLKNFYDAEEYHQDYLIKNPNGYCHIDLRKADEPLP  360 (521)
T ss_pred             CCCceEEEEeCCHHHHHHHHHHHHHHHH--HcCCCe-EEE--EecCCCeeecHHHHHHHHHhCCCceeEeeccccccccc
Confidence            4799999999999999999999999986  468899 999  999999999999999   89999888776552110   


Q ss_pred             ---------------CCCCCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCC
Q 028857          121 ---------------ASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG  185 (202)
Q Consensus       121 ---------------~~~~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~G  185 (202)
                                     ....+++++||+.|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|.+|||||||
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~y~v~~~~gtE~~f~~~~~~~~~~G~y~c~~c~~pLf~s~~Kf~sg~G  440 (521)
T PRK14018        361 GKTKTAPQGKGFDAATYKKPSDAELKRTLTEEQYQITQNAATERAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG  440 (521)
T ss_pred             ccccccccccccchhhccCCChHHHhccCCHHHHHHHHhcCCCCCCCCCCcCCCCCEEEEecCCCCccccCcccccCCCC
Confidence                           12346899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCccc-cCCccee
Q 028857          186 WPAFYEGL-PGAINCS  200 (202)
Q Consensus       186 WPSF~~~i-~~aV~~~  200 (202)
                      ||||++|| +++|.++
T Consensus       441 WPsF~~~i~~~~v~~~  456 (521)
T PRK14018        441 WPSFTRPIDAKVVTEH  456 (521)
T ss_pred             CcccCcccCcCceEEe
Confidence            99999999 4677654

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.5e-38  Score=252.72  Aligned_cols=79  Identities=47%  Similarity=0.931  Sum_probs=75.0

Q ss_pred             CCCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCCcceee
Q 028857          123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCSM  201 (202)
Q Consensus       123 ~~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~aV~~~~  201 (202)
                      ..+++++||++|||+||+|||++|||+||+|+||+++++|+|+|++||+|||+|++|||||||||||++|| +++|.++.
T Consensus         2 ~~~sd~e~~~~Lt~~qy~Vtq~~gTE~pft~~y~~~~~~GiY~c~~cg~pLF~S~~KfdSgcGWPSF~~pi~~~~I~~~~   81 (140)
T COG0229           2 IKPSDEELKEKLTPEQYRVTQNHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSEDKFDSGCGWPSFTKPISPDAITYKE   81 (140)
T ss_pred             CccchHHHHHhcCHHHHHHHHhcCCCCCCCChhhcccCCceEEeecCCCccccccccccCCCCCccccccCCcccceEee
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999 77997753

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-37  Score=251.53  Aligned_cols=85  Identities=69%  Similarity=1.311  Sum_probs=81.4

Q ss_pred             cCCCCCCCCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cC
Q 028857          117 ASGPASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PG  195 (202)
Q Consensus       117 ap~~~~~~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~  195 (202)
                      +|+...++++++|||+.|||+||+|||++|||+||+|+|++++++|+|+|++|+.|||+|.+|||||||||||+++| ||
T Consensus         8 ~~~~~~v~k~~~EWr~~LsPeQ~~v~RekgTE~p~tGey~~~~e~GvY~C~~C~~pLykS~tKfdsgcGWPAF~e~i~~g   87 (146)
T KOG0856|consen    8 APKTGSVQKNDEEWRKVLSPEQFRVLREKGTERPGTGEYTKHFEEGVYVCAGCGTPLYKSTTKFDSGCGWPAFFEAIGPG   87 (146)
T ss_pred             cCCCcccccCHHHHHhhcCHHHhhhhHhhcccCCCCcccccccCCceEEEeecCCccccccccccCCCCCchhhhccCCC
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             Ccceee
Q 028857          196 AINCSM  201 (202)
Q Consensus       196 aV~~~~  201 (202)
                      ||.++.
T Consensus        88 aI~r~~   93 (146)
T KOG0856|consen   88 AITRTP   93 (146)
T ss_pred             ceeecc
Confidence            998763

>TIGR00357 methionine-R-sulfoxide reductase

Probab=100.00  E-value=1.7e-36  Score=244.51  Aligned_cols=76  Identities=42%  Similarity=0.803  Sum_probs=73.7

Q ss_pred             CCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCCccee
Q 028857          125 KSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCS  200 (202)
Q Consensus       125 ~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~aV~~~  200 (202)
                      +++++||+.|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||+++| +++|.++
T Consensus         2 ~~~~ewr~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~V~~~   78 (134)
T TIGR00357         2 PSDEELKKKLTPLQYEVTQNAGTEPPFTNEYWDNKEEGIYVDITCGEPLFSSEDKFDSGCGWPSFYKPISEEVVAYE   78 (134)
T ss_pred             CCHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCCCCeEEEccCCCCccccccchhcCCCCCcCcCcccCCCceEEe
Confidence            578999999999999999999999999999999999999999999999999999999999999999999 8899775

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=1.8e-36  Score=246.35  Aligned_cols=78  Identities=50%  Similarity=0.980  Sum_probs=74.9

Q ss_pred             CCCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCCccee
Q 028857          123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCS  200 (202)
Q Consensus       123 ~~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~aV~~~  200 (202)
                      +.+++++||+.|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||+++| +++|+++
T Consensus         3 ~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~~~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~~V~~~   81 (142)
T PRK00222          3 IEKSKEEWKKQLTPEQYRVTQEHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSDTKFDSGCGWPSFTKPIDEEAIREL   81 (142)
T ss_pred             ccCCHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCchhcCCcccccCCCCCcCcCcccCCCceEEe
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999 6888765

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=100.00  E-value=1.3e-36  Score=242.54  Aligned_cols=74  Identities=59%  Similarity=1.207  Sum_probs=69.8

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccccC-Cccee
Q 028857          127 EEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPG-AINCS  200 (202)
Q Consensus       127 d~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i~~-aV~~~  200 (202)
                      |+|||++|||+||+|||++|||+||||+|++++++|+|+|++||+|||+|++|||||||||||+++|++ +|.++
T Consensus         1 d~ew~~~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~~v~~~   75 (124)
T PF01641_consen    1 DEEWRKRLTPEQYRVLREKGTERPFSGEYWDHKEEGIYVCAVCGTPLFSSDTKFDSGCGWPSFWQPIPGDAVKER   75 (124)
T ss_dssp             -HHHHHHSCHHHHHHHHHTTSSSTTSSGGCCTTSSEEEEETTTS-EEEEGGGEETSSSSSSEESSCSSTTSEEEE
T ss_pred             CHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEcCCCCCccccCcccccCCcCCccccCcCChHHEEEe
Confidence            689999999999999999999999999999999999999999999999999999999999999999966 88765

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=3.8e-35  Score=232.54  Aligned_cols=69  Identities=46%  Similarity=0.980  Sum_probs=66.9

Q ss_pred             hcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccccCCccee
Q 028857          132 AILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCS  200 (202)
Q Consensus       132 ~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i~~aV~~~  200 (202)
                      +.|||+||+|||++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+++|.++
T Consensus         2 ~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~v~~~   70 (119)
T PRK05508          2 NELTPEEEAVILRKGTEPPFSGEYNDFFEKGTYVCKQCGAPLYRSEDKFKSGCGWPSFDDEIKGAVKRI   70 (119)
T ss_pred             CcCCHHHHHHHHhcCCCCCCCCCCcCcCCCeEEEecCCCCccccccccccCCCCCcccCcccccceEEE
Confidence            579999999999999999999999999999999999999999999999999999999999999999765

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=99.97  E-value=1.5e-31  Score=238.04  Aligned_cols=72  Identities=46%  Similarity=0.978  Sum_probs=69.9

Q ss_pred             HHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccccCCccee
Q 028857          129 EWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCS  200 (202)
Q Consensus       129 ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i~~aV~~~  200 (202)
                      .||++|||+||+|||++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||+++|+++|.++
T Consensus         2 ~~~~~Lt~~~y~v~r~~gTE~pf~g~~~~~~~~G~y~c~~c~~~LF~s~~Kf~sg~GWPsF~~~~~~~~~~~   73 (283)
T PRK05550          2 DKMKSLTPFEYRVIEDKGTERPFSGEYYDHDEKGVYLCRRCGAPLFRSEDKFNSGCGWPSFDDEIPGAVKRL   73 (283)
T ss_pred             hhhhhCCHHHHHHHHhcCCCCCCCCcCcCCCCCcEEEcCCCCchhcCChhhccCCCCCcCcCcccCCccEEE
Confidence            599999999999999999999999999999999999999999999999999999999999999999988765

>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.9e-16  Score=132.96  Aligned_cols=63  Identities=16%  Similarity=0.183  Sum_probs=60.1

Q ss_pred             cccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcce
Q 028857           48 SVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVV  113 (202)
Q Consensus        48 ~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vV  113 (202)
                      .||-++|||+|++|+++|+++++++++++.+.+|| |||  |+|+++||+||||||   +|||.+|+.+
T Consensus        96 tqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~I-vte--I~p~~~Fy~AEeYHQ~Yl~KNP~gY~~~  161 (174)
T COG0225          96 TQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPI-VTE--IEPAKNFYPAEEYHQDYLKKNPNGYCHI  161 (174)
T ss_pred             ccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCe-EEE--eeccccCcccHHHHHHHHHhCCCCceee
Confidence            58999999999999999999999999877788899 999  999999999999999   9999999987

>PRK14054 methionine sulfoxide reductase A; Provisional

Probab=99.57  E-value=1.7e-15  Score=126.93  Aligned_cols=71  Identities=18%  Similarity=0.232  Sum_probs=64.1

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcceeeccCC
Q 028857           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVASG  119 (202)
Q Consensus        46 ~s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVlAaap~  119 (202)
                      -..||.|+|||+|++|+++|++++++++..+.+.++| +|+  |+|+.+||+||+|||   .|||.+++.+..+.|+
T Consensus        91 ~G~qYRS~If~~~~~q~~~a~~~~~~~~~~~~~~~~i-~Te--i~~~~~Fy~AEeyHQ~Yl~k~p~~~~~~~~~~~~  164 (172)
T PRK14054         91 RGTQYRSAIFYHDEEQKEIAEASIAELQASGLFDKPI-VTE--VEPAETFYEAEEYHQDYLEKNPNGYCCIFVIPPK  164 (172)
T ss_pred             CCcCceeEEEeCCHHHHHHHHHHHHHHHHhcccCCCc-EEE--EecCCCceECHHHHHHHHHhCCCCcceeeccCHH
Confidence            3579999999999999999999999998754478899 999  999999999999999   8999999988887654

>PRK13014 methionine sulfoxide reductase A; Provisional

Probab=99.54  E-value=7.6e-15  Score=124.39  Aligned_cols=72  Identities=17%  Similarity=0.169  Sum_probs=62.8

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcceeeccCCC
Q 028857           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVASGP  120 (202)
Q Consensus        46 ~s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVlAaap~~  120 (202)
                      -..||.++|||+|++|+++|++++++++.++.+.++| +|+  |+|+.+||+||+|||   .|||.++++.....|+.
T Consensus        96 ~G~QYRS~If~~~~eQ~~~a~~~~~~~~~~~~~~~~i-~Te--i~p~~~Fy~AEeyHQ~Yl~k~p~~~yc~~~~~~~~  170 (186)
T PRK13014         96 RGEQYRSAIFYHDEEQKKVAEAYIAQLDEAGIFKKPI-VTP--IKPYKNFYPAEDYHQDYLKKNPTHPYIVYNDLPKG  170 (186)
T ss_pred             CCCCceEEEEeCCHHHHHHHHHHHHHHHhccccCCCc-EEE--EecCCCeeeCHHHHHHHHHhCCCCCccEEEeChhh
Confidence            3579999999999999999999999998765578899 999  999999999999999   89999877656655543

>TIGR00401 msrA methionine-S-sulfoxide reductase

Probab=99.49  E-value=2.6e-14  Score=117.25  Aligned_cols=59  Identities=17%  Similarity=0.211  Sum_probs=54.0

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccC
Q 028857           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRS  107 (202)
Q Consensus        46 ~s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP  107 (202)
                      -..||.|+||++|++|+++|++++++++++..+.+|| +|+  |+|+++||+||+|||   +|||
T Consensus        88 ~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i-~te--i~~~~~Fy~AE~yHQ~Yl~k~p  149 (149)
T TIGR00401        88 IGTQYRSGIYYHSDEQEKAARASKERLQAAANYGDPI-VTE--IEPAENFYYAEEYHQQYLKKNP  149 (149)
T ss_pred             CCCCceEEEEeCCHHHHHHHHHHHHHHHHhcccCCCe-EEE--EecCCCeeecHHHHHHHHhhCc
Confidence            3579999999999999999999999998765578899 999  999999999999999   7887

This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.

>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=99.49  E-value=2.5e-14  Score=117.90  Aligned_cols=65  Identities=15%  Similarity=0.163  Sum_probs=57.5

Q ss_pred             ccccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcce
Q 028857           45 TFSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVV  113 (202)
Q Consensus        45 ~~s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vV  113 (202)
                      ....||.++||++|++|+++|++++++++.. .+.++| +|+  |+|+..||+||+|||   .|||.+|+.+
T Consensus        87 d~G~qYrs~If~~~~~q~~~a~~~~~~~~~~-~~~~~i-~te--i~p~~~Fy~AE~yHQ~Yl~k~p~~yc~~  154 (155)
T PF01625_consen   87 DRGTQYRSAIFYHDEEQKKIAEASIAELQAK-RFGRPI-VTE--IEPLKNFYPAEEYHQKYLEKNPNGYCHY  154 (155)
T ss_dssp             EESGGG-EEEEESSHHHHHHHHHHHHHHHHH-TTSSSB-S-E--EEECEEEEEHHGGGTTHHHHSTTSTTSS
T ss_pred             cccccceeEEecCCHHHHHHHHHHHHHHHHh-cCCCCe-EEE--EecCCcEEECHHHHHHHHHhCCcccEec
Confidence            4568999999999999999999999999885 478899 999  999999999999999   8999997764

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....

>PRK05528 methionine sulfoxide reductase A; Provisional

Probab=99.46  E-value=7.1e-14  Score=115.59  Aligned_cols=60  Identities=5%  Similarity=-0.074  Sum_probs=54.3

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcce
Q 028857           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVV  113 (202)
Q Consensus        47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vV  113 (202)
                      -.||.|+|||+|++|+++|++++++++.    .++| +|+  |.|+.+||+||+|||   .|||.+|+.+
T Consensus        85 G~QYRS~If~~d~eQ~~~a~~~~~~~~~----~~~i-~Te--i~~~~~Fy~AE~yHQ~Yl~k~p~~yc~~  147 (156)
T PRK05528         85 GEKYRTGIYSEVDDHLIEARQFIERRED----ADKI-AVE--VLPLTNYVKSAEEHQDRLEKFPEDYCHI  147 (156)
T ss_pred             CCCceEEEEeCCHHHHHHHHHHHHHHhc----CCCe-EEE--EecCCCeeecHHHHHHHHHhCCCCCccc
Confidence            4699999999999999999999988865    3589 999  999999999999999   8999988764

>PRK00058 methionine sulfoxide reductase A; Provisional

Probab=99.39  E-value=2.5e-13  Score=117.37  Aligned_cols=65  Identities=12%  Similarity=0.117  Sum_probs=55.4

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCC--CCCeeeeccceeeccCceechhhhc---cccCcCCcce
Q 028857           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLK--LKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVV  113 (202)
Q Consensus        46 ~s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~--~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vV  113 (202)
                      -..||.++|||+|++|+++|+++++.++.....  .++| +|+  |+|+.+||+||+|||   .|||.+|+.+
T Consensus       133 ~G~QYRS~Ify~~~eQ~~~a~~~~~~~~~~~~~~~~~~i-~Te--I~~~~~Fy~AEeyHQ~Yl~k~p~~yc~~  202 (213)
T PRK00058        133 VGTQYRSAIYTLTPEQLAAAEASREAYQQALAAAGDGPI-TTE--IAPAPPFYYAEDYHQQYLAKNPNGYCGL  202 (213)
T ss_pred             CCcCceEEEEeCCHHHHHHHHHHHHHHHHHhhhccCCCe-EEE--EecCCCcccCHHHHHHHHHhCCCCcccc
Confidence            347999999999999999999999988763211  3589 999  999999999999999   8999977653

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=99.31  E-value=2.1e-12  Score=115.63  Aligned_cols=59  Identities=17%  Similarity=0.259  Sum_probs=53.5

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCC
Q 028857           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRG  110 (202)
Q Consensus        46 ~s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry  110 (202)
                      -..||.++|||+|++|+++|+++++++++.+   ++| +|+  |+|+.+||+||+|||   .|||.++
T Consensus       215 ~G~QYRS~If~~d~eq~~~A~~~~~~~~~~~---~~i-~Te--I~~l~~Fy~AEeyHQ~Yl~k~p~~~  276 (283)
T PRK05550        215 IGTQYRSAIFYHDDEQKQIAEKLIAELTKKG---YPV-VTE--VEAAGPFYPAEDYHQDYYEKHGKQP  276 (283)
T ss_pred             CCcCceEEEEeCCHHHHHHHHHHHHHHHhcC---Cce-EEE--EeeCCCeeECHHHHHHHHHhCCCCC
Confidence            3579999999999999999999999998743   389 999  999999999999999   8999984

>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=5.6e-12  Score=106.46  Aligned_cols=56  Identities=18%  Similarity=0.212  Sum_probs=51.8

Q ss_pred             cccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCc
Q 028857           48 SVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSF  108 (202)
Q Consensus        48 ~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~  108 (202)
                      .||-|+||+++++|+++|+.++++.+..  ..++| +|+  |+|++.||.||+|||   .|||-
T Consensus       114 tQYRS~I~~~s~eq~k~A~~s~e~~Q~k--~~~kI-~T~--I~p~~kFY~AE~yHQqYl~K~~~  172 (191)
T KOG1635|consen  114 TQYRSGIYTYSPEQEKLARESKEREQKK--WNGKI-VTE--ILPAKKFYRAEEYHQQYLSKNPR  172 (191)
T ss_pred             ceeeeeeeeCCHHHHHHHHHHHHHHHhc--cCCcc-eEE--EeeccchhhchHHHHHHHhhCCC
Confidence            5899999999999999999999998873  67899 999  999999999999999   78883

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
2k8d_A	151	Solution Structure Of A Zinc-Binding Methionine Sul		3e-18
3cez_A	164	Crystal Structure Of Methionine-R-Sulfoxide Reducta		3e-14
3e0m_A	313	Crystal Structure Of Fusion Protein Of Msra And Msr		3e-12
2l1u_A	143	Structure-Functional Analysis Of Mammalian Msrb2 Pr		4e-12
3hcg_A	146	Structure Of The C-Terminal Domain (Msrb) Of Neisse		3e-11
1l1d_A	152	Crystal Structure Of The C-Terminal Methionine Sulf		3e-11
3hch_A	146	Structure Of The C-Terminal Domain (Msrb) Of Neisse		2e-10
3hci_A	154	Structure Of Msrb From Xanthomonas Campestris (Comp		1e-09
3hcj_A	154	Structure Of Msrb From Xanthomonas Campestris (Oxid		1e-09
3e0o_A	144	Crystal Structure Of Msrb Length = 144		1e-07
2kzn_A	151	Solution Nmr Structure Of Peptide Methionine Sulfox		1e-07
3mao_A	105	Crystal Structure Of Human Methionine-R-Sulfoxide R		4e-04

>pdb|2K8D|A Chain A, Solution Structure Of A Zinc-Binding Methionine Sulfoxide Reductase Length = 151

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 48/69 (69%)
Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           +  S++EWR IL PE FR+ R+  TE P TG+Y    ++GIY C  CGT L+ S TKF+S
Sbjct: 21  IELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDS 80
Query: 183 GCGWPAFYE 191
           G GWP+FY+
Sbjct: 81  GTGWPSFYD 89

>pdb|3CEZ|A Chain A, Crystal Structure Of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei Length = 164

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 111 GVVLAVASGPASVN-----------KSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHF 159
           G + A   GP S++           K + E R  L+P Q+ + +  ATE P TGEY    
Sbjct: 10  GTLEAQTQGPGSMSGDRDDPRYPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTE 69
Query: 160 EEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAI 197
           + GIY+C  CGT L++S  K++SGCGWP++++ + G +
Sbjct: 70  DAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEV 107

>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb Length = 313

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
           S+E  +A LS E +R+ ++ ATE P T  YD+ FEEGIY     G PL+ +  KF SGCG
Sbjct: 172 SQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCG 231
Query: 186 WPAF 189
           WP+F
Sbjct: 232 WPSF 235

>pdb|2L1U|A Chain A, Structure-Functional Analysis Of Mammalian Msrb2 Protein Length = 143

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 129 EWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPA 188
           +W+  L+PEQF + R+K TE P +G Y  + E G+Y+C  C +PL+ S  K+ SG GWP+
Sbjct: 3   DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62
Query: 189 FYE 191
           F E
Sbjct: 63  FSE 65

>pdb|3HCG|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 146

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
           S+ E +  L+ EQ+++ +  ATEY  + EYD  F+ GIY     G PL+ S  K++SGCG
Sbjct: 6   SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG 65
Query: 186 WPAF 189
           WP+F
Sbjct: 66  WPSF 69

>pdb|1L1D|A Chain A, Crystal Structure Of The C-Terminal Methionine Sulfoxide Reductase Domain (Msrb) Of N. Gonorrhoeae Pilb Length = 152

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
           S+ E +  L+ EQ+++ +  ATEY  + EYD  F+ GIY     G PL+ S  K++SGCG
Sbjct: 12  SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG 71
Query: 186 WPAF 189
           WP+F
Sbjct: 72  WPSF 75

>pdb|3HCH|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria Meningitidis Pilb (Complex With Substrate) Length = 146

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
           S+ E +  L+ EQ+++ +  ATEY  + EYD  F+ GIY     G PL+ S  K++SG G
Sbjct: 6   SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGSG 65
Query: 186 WPAF 189
           WP+F
Sbjct: 66  WPSF 69

>pdb|3HCI|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Complex-Like Form) Length = 154

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 132 AILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFY 190
           A LS E+ R+L    TE P  G +  +  +G+Y C  CG PL++S  KF+SG GWP+F+
Sbjct: 19  AGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFF 77

>pdb|3HCJ|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Oxidized Form) Length = 154

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 132 AILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFY 190
           A LS E+ R+L    TE P  G +  +  +G+Y C  CG PL++S  KF+SG GWP+F+
Sbjct: 19  AGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFF 77

>pdb|3E0O|A Chain A, Crystal Structure Of Msrb Length = 144

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 138 QFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAF 189
           Q+ + +   TE P   EY  H EEG+Y     G PL+ S  KF+S CGWP+F
Sbjct: 17  QYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSF 68

>pdb|2KZN|A Chain A, Solution Nmr Structure Of Peptide Methionine Sulfoxide Reductase Msrb From Bacillus Subtilis, Northeast Structural Genomics Consortium Target Sr10 Length = 151

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 138 QFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAF 189
           Q+ + +   TE P   EY  H EEG+Y     G PL+ S  KF+S CGWP+F
Sbjct: 16  QYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSF 67

>pdb|3MAO|A Chain A, Crystal Structure Of Human Methionine-R-Sulfoxide Reductase B1 (Msrb1) Length = 105

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 155 YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL 193
           +  HFE G+Y C+ CG  L+ S +K+     WPAF E +
Sbjct: 5   FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETI 43

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	2e-41
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	5e-40
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	4e-39
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	6e-39
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	2e-38
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	9e-38
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	1e-23
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	3e-21
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	4e-21

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} Length = 151

 Score =  136 bits (345), Expect = 2e-41
 Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           +  S++EWR IL PE FR+ R+  TE P TG+Y    ++GIY C  CGT L+ S TKF+S
Sbjct: 21  IELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDS 80

Query: 183 GCGWPAFYEGL-PGAI 197
           G GWP+FY+ +    I
Sbjct: 81  GTGWPSFYDVVSEHNI 96

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A* Length = 154

 Score =  133 bits (336), Expect = 5e-40
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
                +   A LS E+ R+L    TE P  G +  +  +G+Y C  CG PL++S  KF+S
Sbjct: 10  SPAQRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDS 69

Query: 183 GCGWPAFYEGL-PGAI 197
           G GWP+F+    P  +
Sbjct: 70  GTGWPSFFAPYDPAHV 85

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A Length = 164

 Score =  130 bits (330), Expect = 4e-39
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
             K + E R  L+P Q+ + +  ATE P TGEY    + GIY+C  CGT L++S  K++S
Sbjct: 33  YPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHS 92

Query: 183 GCGWPAFYEGL-PGAIN 198
           GCGWP++++ +    I+
Sbjct: 93  GCGWPSYFKPIDGEVID 109

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} PDB: 1xm0_A 2kzn_A Length = 144

 Score =  129 bits (328), Expect = 6e-39
 Identities = 26/76 (34%), Positives = 40/76 (52%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           +  ++EE    L+  Q+ + +   TE P   EY  H EEG+Y     G PL+ S  KF+S
Sbjct: 2   MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDS 61

Query: 183 GCGWPAFYEGLPGAIN 198
            CGWP+F + +   + 
Sbjct: 62  QCGWPSFTKPIEEEVE 77

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus} Length = 143

 Score =  128 bits (323), Expect = 2e-38
 Identities = 29/67 (43%), Positives = 42/67 (62%)

Query: 129 EWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPA 188
           +W+  L+PEQF + R+K TE P +G Y  + E G+Y+C  C +PL+ S  K+ SG GWP+
Sbjct: 3   DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62

Query: 189 FYEGLPG 195
           F E    
Sbjct: 63  FSEAYGS 69

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} PDB: 3hch_A* 1l1d_A Length = 146

 Score =  126 bits (320), Expect = 9e-38
 Identities = 28/69 (40%), Positives = 41/69 (59%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
              S+ E +  L+ EQ+++ +  ATEY  + EYD  F+ GIY     G PL+ S  K++S
Sbjct: 3   KKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDS 62

Query: 183 GCGWPAFYE 191
           GCGWP+F  
Sbjct: 63  GCGWPSFTR 71

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313

 Score = 94.7 bits (236), Expect = 1e-23
 Identities = 32/66 (48%), Positives = 42/66 (63%)

Query: 124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSG 183
             S+E  +A LS E +R+ ++ ATE P T  YD+ FEEGIY     G PL+ +  KF SG
Sbjct: 170 KPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASG 229

Query: 184 CGWPAF 189
           CGWP+F
Sbjct: 230 CGWPSF 235

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens} Length = 105

 Score = 83.4 bits (207), Expect = 3e-21
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 152 TGE-YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAI 197
           + E +  HFE G+Y C+ CG  L+ S +K+     WPAF E +    
Sbjct: 1   SMEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADS 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	100.0
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	100.0
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	100.0
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	100.0
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	100.0
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	100.0
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	100.0
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	99.88
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	99.88
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	99.85
1nwa_A	203	Peptide methionine sulfoxide reductase MSRA; oxido	99.73
4gwb_A	168	Peptide methionine sulfoxide reductase MSRA 3; str	99.64
3bqh_A	193	PILB, peptide methionine sulfoxide reductase MSRA/	99.61
3pim_A	187	Peptide methionine sulfoxide reductase; methionine	99.58
1ff3_A	211	Peptide methionine sulfoxide reductase; alpha beta	99.5
1fvg_A	199	Peptide methionine sulfoxide reductase; oxidoreduc	99.46
2j89_A	261	Methionine sulfoxide reductase A; MSRA, poplar, ox	99.43
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	85.18
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	82.74

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=100.00  E-value=5.4e-53  Score=377.74  Aligned_cols=149  Identities=24%  Similarity=0.332  Sum_probs=135.1

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcceeecc---CCC
Q 028857           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVA---SGP  120 (202)
Q Consensus        47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVlAaa---p~~  120 (202)
                      -.||.|+|||+|++|+++|++++++++.  .+.+|| |||  |+|+.+||+||+|||   .|||.+|+.+....   +..
T Consensus        89 G~QYRS~Ify~~~~Q~~~a~~~~~~~~~--~~~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knP~~Yc~~~~~~~~~~~~  163 (313)
T 3e0m_A           89 GRQYRTGIYYQDEADLPAIYTVVQEQER--MLGRKI-AVE--VEQLRHYILAEDYHQDYLRKNPSGYCHIDVTDADKPLI  163 (313)
T ss_dssp             SGGGCCEEEESCGGGHHHHHHHHHHHHH--HHSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTCCCCSCGGGGTSCCC
T ss_pred             ccccceeEecCCHHHHHHHHHHHHHHHH--hcCCCe-EEE--EeeccceeEcHHHHHHHHHHCCCcceeeecccchhhhh
Confidence            4699999999999999999999999987  468899 999  999999999999999   89999888776543   111


Q ss_pred             C---CCCCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCC
Q 028857          121 A---SVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGA  196 (202)
Q Consensus       121 ~---~~~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~a  196 (202)
                      .   -..++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++|| +++
T Consensus       164 ~~~~Y~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~i~~~~  243 (313)
T 3e0m_A          164 DAANYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKEL  243 (313)
T ss_dssp             CGGGGCCCCHHHHHHHSCHHHHHHHHHCCCCCSSSSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSGGG
T ss_pred             cccccccCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCccccCCCccccCCCCCcccCcccCCCc
Confidence            1   244699999999999999999999999999999999999999999999999999999999999999999999 678


Q ss_pred             ccee
Q 028857          197 INCS  200 (202)
Q Consensus       197 V~~~  200 (202)
                      |.++
T Consensus       244 v~~~  247 (313)
T 3e0m_A          244 IHYY  247 (313)
T ss_dssp             EEEE
T ss_pred             eEEe
Confidence            8764

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=100.00  E-value=3.3e-38  Score=255.74  Aligned_cols=77  Identities=34%  Similarity=0.583  Sum_probs=74.0

Q ss_pred             CCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccccCCccee
Q 028857          124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCS  200 (202)
Q Consensus       124 ~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i~~aV~~~  200 (202)
                      .++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+++|.++
T Consensus         3 ~~s~~ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~~v~~~   79 (144)
T 3e0o_A            3 AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEK   79 (144)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTTTEEEE
T ss_pred             CCCHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhccceEEe
Confidence            46799999999999999999999999999999999999999999999999999999999999999999998888765

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=100.00  E-value=2.3e-37  Score=255.22  Aligned_cols=80  Identities=39%  Similarity=0.811  Sum_probs=75.6

Q ss_pred             CCCCCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCcccc-CCcce
Q 028857          121 ASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINC  199 (202)
Q Consensus       121 ~~~~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i~-~aV~~  199 (202)
                      ..+.++++|||++|||+||+|||++|||+||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+
T Consensus        31 ~~~~~s~~ewr~~Ltp~qy~V~r~~GTErpftg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~pi~~~~V~~  110 (164)
T 3cxk_A           31 YPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVIDE  110 (164)
T ss_dssp             CCSCCCHHHHHHHSCHHHHHHHHHCCCCCTTCSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSTTSEEE
T ss_pred             cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCcccccccCCCeEEEccCCCccccCCchhccCCCCCcccCcccCCCceEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999995 47876


Q ss_pred             e
Q 028857          200 S  200 (202)
Q Consensus       200 ~  200 (202)
                      +
T Consensus       111 ~  111 (164)
T 3cxk_A          111 K  111 (164)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=100.00  E-value=9.3e-38  Score=253.70  Aligned_cols=77  Identities=36%  Similarity=0.742  Sum_probs=73.7

Q ss_pred             CCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCCccee
Q 028857          124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCS  200 (202)
Q Consensus       124 ~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~aV~~~  200 (202)
                      .++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++|| +++|.++
T Consensus         4 ~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~   81 (146)
T 3hcg_A            4 KPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEH   81 (146)
T ss_dssp             CCCHHHHHHHSBHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSGGGEEEE
T ss_pred             CCCHHHHHhhCCHHHHHHHHHcCCCCCCCCCCcCCCCCEEEEecCCCcccccCcccccCCCCChhhccccCCCceEEe
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999 5788764

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=9.5e-38  Score=254.76  Aligned_cols=80  Identities=46%  Similarity=0.958  Sum_probs=75.5

Q ss_pred             CCCCCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCcccc-CCcce
Q 028857          121 ASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINC  199 (202)
Q Consensus       121 ~~~~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i~-~aV~~  199 (202)
                      ..+.++++|||++|||+||+|||++|||+||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+
T Consensus        19 ~~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~V~~   98 (151)
T 2k8d_A           19 ERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKL   98 (151)
T ss_dssp             ECSCCCTTGGGTTSCTTHHHHHHHTTCSSSCSCCCCCCCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCCSCTTSEEC
T ss_pred             cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEecCCCCcccCCcccccCCCCCcccCcccCCCceEE
Confidence            34668999999999999999999999999999999999999999999999999999999999999999999995 58876


Q ss_pred             e
Q 028857          200 S  200 (202)
Q Consensus       200 ~  200 (202)
                      +
T Consensus        99 ~   99 (151)
T 2k8d_A           99 R   99 (151)
T ss_dssp             C
T ss_pred             e
Confidence            5

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=100.00  E-value=3.3e-36  Score=246.23  Aligned_cols=75  Identities=36%  Similarity=0.721  Sum_probs=71.2

Q ss_pred             CHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCCccee
Q 028857          126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCS  200 (202)
Q Consensus       126 sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~aV~~~  200 (202)
                      ..++||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++|| +++|.++
T Consensus        13 ~~~e~~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~   88 (154)
T 3hcj_A           13 QRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDPAHVREI   88 (154)
T ss_dssp             HHHHHHHTSCHHHHHHHSCCSSSCCCCCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCGGGEEEE
T ss_pred             HHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCccceEEe
Confidence            35689999999999999999999999999999999999999999999999999999999999999999 5788765

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=100.00  E-value=7.9e-37  Score=247.52  Aligned_cols=74  Identities=41%  Similarity=0.834  Sum_probs=71.1

Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc--------cCCcce
Q 028857          128 EEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL--------PGAINC  199 (202)
Q Consensus       128 ~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i--------~~aV~~  199 (202)
                      +|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++||        +++|.+
T Consensus         2 ~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~~~~~~~~V~~   81 (143)
T 2l1u_A            2 ADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTGILR   81 (143)
T ss_dssp             CCSHHHHSCSHHHHHHHTTCCCSCCGGGSSCCCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSCCSCCTTHHHHTCEEE
T ss_pred             hHHHhhCCHHHHHHHHhcCCCCCCcCCCcCCcCCeEEEeCCCCCeeecCcccccCCCCChhhchhhccccccCCCCceEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999        789877


Q ss_pred             ee
Q 028857          200 SM  201 (202)
Q Consensus       200 ~~  201 (202)
                      +.
T Consensus        82 ~~   83 (143)
T 2l1u_A           82 RL   83 (143)
T ss_dssp             EE
T ss_pred             ee
Confidence            53

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=99.88  E-value=8.7e-24  Score=167.62  Aligned_cols=51  Identities=35%  Similarity=0.808  Sum_probs=46.9

Q ss_pred             CCCCC-CCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCCccee
Q 028857          150 PGTGE-YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCS  200 (202)
Q Consensus       150 pfsg~-y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~aV~~~  200 (202)
                      +|+|+ ||+++++|+|+|++||+|||+|++|||||||||||++|| +++|.++
T Consensus         6 ~F~ge~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~   58 (124)
T 2kv1_A            6 FFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKC   58 (124)
T ss_dssp             CCCSCSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEE
T ss_pred             CccCccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecccccceEEEE
Confidence            79999 788899999999999999999999999999999999999 5677543

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=99.85  E-value=1.2e-22  Score=157.21  Aligned_cols=48  Identities=33%  Similarity=0.824  Sum_probs=44.5

Q ss_pred             CCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccc-cCCccee
Q 028857          153 GEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCS  200 (202)
Q Consensus       153 g~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i-~~aV~~~  200 (202)
                      -+||+++++|+|+|++||+|||+|++|||||||||||++|| +++|.++
T Consensus         3 e~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~   51 (105)
T 3mao_A            3 EVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKR   51 (105)
T ss_dssp             CCCTTCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESCCSSTTSEEEE
T ss_pred             ccccCCCCCEEEEcCCCCCccccCCcccCCCCCChhhccccCCCceEEE
Confidence            37999999999999999999999999999999999999999 4688764

>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1

Probab=99.73  E-value=2.2e-18  Score=146.41  Aligned_cols=88  Identities=19%  Similarity=0.161  Sum_probs=64.8

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcceeeccCCCCCC
Q 028857           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVASGPASV  123 (202)
Q Consensus        47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVlAaap~~~~~  123 (202)
                      -.||-|+|||+|++|+++|+++++++++++.+.+|| |||  |+|+.+||+||+|||   .|||.+|++ ....|+....
T Consensus       110 GtQYRSaIfy~~~eQ~~~A~~~~~~lq~~g~~~~~I-vTe--I~p~~~Fy~AE~YHQ~Yl~knP~~Y~c-~~~~~~~~k~  185 (203)
T 1nwa_A          110 GTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKV-VTE--VSPAGDFWEAEPEHQDYLQRYPNGYTC-HFVRPGWRLP  185 (203)
T ss_dssp             SGGGCEEEEESSHHHHHHHHHHHHHHHHHCCSSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTSCCC-CCCCTTSCCS
T ss_pred             CccccccccCCCHHHHHHHHHHHHHHHHhcCcCCCe-EEE--EecCCCEEEChHHHHHHHHhCCCCCcc-cccHHHHHhh
Confidence            469999999999999999999999999876688999 999  999999999999999   899999733 4455665555


Q ss_pred             CCC-HHHHHhcCCHHH
Q 028857          124 NKS-EEEWRAILSPEQ  138 (202)
Q Consensus       124 ~~s-d~ewr~~Lt~~q  138 (202)
                      .+. +.+||..|||+.
T Consensus       186 ~~~a~~~~~~~~~~~~  201 (203)
T 1nwa_A          186 RRTAESALRASLSPEL  201 (203)
T ss_dssp             CC--------------
T ss_pred             hhhhhhhhhhhcCccc
Confidence            554 445999999973

>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}

Probab=99.64  E-value=2.3e-16  Score=130.58  Aligned_cols=64  Identities=11%  Similarity=0.058  Sum_probs=58.8

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcc
Q 028857           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGV  112 (202)
Q Consensus        46 ~s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~v  112 (202)
                      .-.||.|+|||+|++|+++|++++++++.++.+.++| |||  |+|+.+||+||+|||   +|||.+|++
T Consensus        86 ~G~QYRS~If~~~~~Q~~~a~~~~~~l~~~~~~~~~I-vTe--i~p~~~Fy~AE~yHQ~Yl~knP~~y~C  152 (168)
T 4gwb_A           86 IGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKV-VTE--VEPVRDFWEAEPEHQNYLERYPNGYTC  152 (168)
T ss_dssp             ESGGGCEEEEESSHHHHHHHHHHHHHHHHHTCSSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTSCCC
T ss_pred             CCcCceEEEecCCHHHHHHHHHHHHHHHHcccCCCCE-EEE--EEecCCeeECHHHHHHHHHhCCCCCcc
Confidence            3469999999999999999999999998877788999 999  999999999999999   999998854

>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A

Probab=99.61  E-value=6.4e-16  Score=130.40  Aligned_cols=66  Identities=14%  Similarity=0.093  Sum_probs=57.8

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcceeec
Q 028857           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAV  116 (202)
Q Consensus        46 ~s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVlAa  116 (202)
                      --.||.|+|||+|++|+++|+++++.++..  +.+|| |||  |+|+.+||+||+|||   .|||.+|+.+...
T Consensus        90 ~G~QYRS~If~~~~~Q~~~A~~~~~~~~~~--~~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knp~~Yc~~~~~  158 (193)
T 3bqh_A           90 TGTQYRSGVYYTDPAEKAVIAAALKREQQK--YQLPL-VVE--NEPLKNFYDAEEYHQDYLIKNPNGYCHIDIR  158 (193)
T ss_dssp             TTCTTCEEEEESSHHHHHHHHHHHHHHHTT--CSSCB-CCE--EEECCCEEECCGGGTTHHHHCTTCCC---CC
T ss_pred             cCccceeeeecCCHHHHHHHHHHHHHHHHH--hCCCe-EEE--EecCCCeeEcHHHHHHHHHhCCCCceeeecc
Confidence            457999999999999999999999999873  78899 999  999999999999999   8999988876543

>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B

Probab=99.58  E-value=8.2e-16  Score=129.22  Aligned_cols=62  Identities=15%  Similarity=0.099  Sum_probs=57.0

Q ss_pred             cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcc
Q 028857           46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGV  112 (202)
Q Consensus        46 ~s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~v  112 (202)
                      --.||.|+|||+|++|+++|++++++++.  .+.+|| |||  |+|+..||+||+|||   +|||.+|++
T Consensus       115 ~G~QYRS~Ify~~~~Q~~~A~~~~~~l~~--~~~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knP~~Ycc  179 (187)
T 3pim_A          115 KGTQYRSGLFAHSDADLKELAKIKEEWQP--KWGNKI-ATV--IEPIKNFYDAEEYHQLYLDKNPQGYAC  179 (187)
T ss_dssp             -CGGGCCEEEESSHHHHHHHHHHHHHHGG--GGTTCB-CCE--EEEEEEEEEHHHHHHHHCTTCTTCTTC
T ss_pred             cCcccceeeEeCCHHHHHHHHHHHHHHHH--HhCCCc-EEE--EeeCCCeeecHHHHHHHHHHCCCCCCC
Confidence            34799999999999999999999999987  468899 999  999999999999999   999998876

>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A

Probab=99.50  E-value=1e-14  Score=124.52  Aligned_cols=65  Identities=11%  Similarity=0.081  Sum_probs=56.4

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccC---CCCCCCeeeeccceeeccCceechhhhc---cccCcCCccee
Q 028857           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPS---LLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVL  114 (202)
Q Consensus        47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~---~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVl  114 (202)
                      -.||-|+|||+|++|+++|+++++.+++.   ..+++|| |||  |+|+..||+||+|||   .|||.+|+.+.
T Consensus       131 GtQYRSaIf~~~~eQ~~~A~~~~~~~q~~l~~~g~~~~I-vTe--I~p~~~Fy~AE~YHQ~Yl~knP~~Yc~~~  201 (211)
T 1ff3_A          131 GTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHI-TTE--IANATPFYYAEDDHQQYLHKNPYGYCGIG  201 (211)
T ss_dssp             SGGGCCEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCE--ECCCCCEEECCGGGTTHHHHSCCCCCCCC
T ss_pred             CccceeeeecCCHHHHHHHHHHHHHHHHHHhhcccCCce-EEE--EeeCCCceeChHHHHHHHHHCCCCCcCcC
Confidence            46999999999999999999999877653   1256799 999  999999999999999   89999877643

>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*

Probab=99.46  E-value=1.9e-14  Score=121.95  Aligned_cols=62  Identities=13%  Similarity=0.042  Sum_probs=53.3

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCC--CCCCeeeeccceeeccCceechhhhc---cccCcCCc
Q 028857           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLL--KLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGG  111 (202)
Q Consensus        47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~--~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~  111 (202)
                      -.||.|+|||+|++|+++|+++++.+++...  ..++| |||  |+|+..||+||+|||   .|||.+|+
T Consensus       132 G~QYRS~If~~~~~Q~~~A~~~~~~~q~~~~~~g~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knP~~Yc  198 (199)
T 1fvg_A          132 GSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLI-TTD--IREGQTFYYAEDYHQQYLSKDPDGYC  198 (199)
T ss_dssp             SGGGCEEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCC-CCE--ECSSCCCEECCGGGTTHHHHSTTCCC
T ss_pred             ChhheeccccCCHHHHHHHHHHHHHHHHHHhhcCCCCe-EEE--EeeCCCeeECHHHHHHHHHhCCCCCC
Confidence            4699999999999999999999988765310  02589 999  999999999999999   89999765

>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}

Probab=99.43  E-value=1e-13  Score=121.39  Aligned_cols=60  Identities=17%  Similarity=0.202  Sum_probs=55.2

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCc
Q 028857           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGG  111 (202)
Q Consensus        47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~  111 (202)
                      -.||-++|||+|++|+++|+++++++++.  +.++| |||  |+|+.+||+||+|||   .|||..++
T Consensus       183 GtQYRSaIfy~~eeQ~~~Ae~s~~~~q~~--~~~~I-vTE--I~p~~~Fy~AEdYHQ~Yl~Kn~~~gy  245 (261)
T 2j89_A          183 GTQYRSGIYYYTPEQEKAAKESLERQQKL--LNRKI-VTE--ILPAKKFYRAEEYHQQYLAKGGRFGF  245 (261)
T ss_dssp             SGGGCEEEEESSHHHHHHHHHHHHHHHTT--CSSCC-CCE--EEECCCEEECCGGGTTTTTTTTTTSC
T ss_pred             CccccccccCCCHHHHHHHHHHHHHHHHh--cCCCc-EEE--EecCCCeeECHHHHHHHHHHCCCCCC
Confidence            46999999999999999999999999874  67899 999  999999999999999   89998665

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=85.18  E-value=0.9  Score=29.25  Aligned_cols=32  Identities=28%  Similarity=0.562  Sum_probs=26.3

Q ss_pred             CCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCc
Q 028857          158 HFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYE  191 (202)
Q Consensus       158 ~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~  191 (202)
                      ..+.|..+|..||..+  .+.-.|.|.-|.+|..
T Consensus        19 d~~~gelvC~~CG~v~--~e~~id~~~ewr~f~~   50 (50)
T 1pft_A           19 DPERGEIVCAKCGYVI--EENIIDMGPEWRAFDA   50 (50)
T ss_dssp             ETTTTEEEESSSCCBC--CCCCCCCCSSSSCCCC
T ss_pred             cCCCCeEECcccCCcc--cccccccCCcccccCC
Confidence            3468999999999887  4566899999999963

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=82.74  E-value=0.8  Score=31.01  Aligned_cols=33  Identities=21%  Similarity=0.628  Sum_probs=28.0

Q ss_pred             CCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCc
Q 028857          157 KHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYE  191 (202)
Q Consensus       157 ~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~  191 (202)
                      ...+.|.++|..||.-|  .+.-.|.|.-|.+|..
T Consensus        24 ~D~~~ge~vC~~CGlVl--~e~~iD~gpEWR~F~~   56 (58)
T 1dl6_A           24 EDYRAGDMICPECGLVV--GDRVIDVGSEWRTFSN   56 (58)
T ss_dssp             ECSSSCCEECTTTCCEE--CCSCCCCCCSCCCSCC
T ss_pred             EeCCCCeEEeCCCCCEE--eccccccCCcccccCC
Confidence            34578999999999887  5677999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1xm0a1	143	b.88.1.3 (A:1-143) Peptide methionine sulfoxide re	2e-22
d1l1da_	144	b.88.1.3 (A:) C-terminal MsrB domain of peptide me	1e-20

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]} Length = 143

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

 Score = 86.1 bits (213), Expect = 2e-22
 Identities = 26/76 (34%), Positives = 40/76 (52%)

Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
           +  ++EE    L+  Q+ + +   TE P   EY  H EEG+Y     G PL+ S  KF+S
Sbjct: 1   MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDS 60

Query: 183 GCGWPAFYEGLPGAIN 198
            CGWP+F + +   + 
Sbjct: 61  QCGWPSFTKPIEEEVE 76

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]} Length = 144

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

 Score = 81.6 bits (201), Expect = 1e-20
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query: 125 KSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGC 184
            S+ E +  L+ EQ+++ +  ATEY  + EYD  F+ GIY     G PL+ S  K++SGC
Sbjct: 4   PSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGC 63

Query: 185 GWPAFYEGLPGAINC 199
           GWP+F   +      
Sbjct: 64  GWPSFTRPIDAKSVT 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	100.0
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	100.0
d1nwaa_	168	Peptide methionine sulfoxide reductase {Mycobacter	99.57
d1fvga_	192	Peptide methionine sulfoxide reductase {Cow (Bos t	99.43
d1ff3a_	211	Peptide methionine sulfoxide reductase {Escherichi	99.42

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=3.9e-36  Score=241.68  Aligned_cols=77  Identities=34%  Similarity=0.583  Sum_probs=73.5

Q ss_pred             CCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccccCCccee
Q 028857          124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCS  200 (202)
Q Consensus       124 ~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i~~aV~~~  200 (202)
                      ..++++|+++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++||+++|.+.
T Consensus         2 ~~~~~e~~~~Lt~~qy~V~r~~gTE~pFtg~y~~~~~~G~Y~C~~C~~pLF~S~~KfdSg~GWPSF~~~i~~~v~~~   78 (143)
T d1xm0a1           2 AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEK   78 (143)
T ss_dssp             CCCHHHHHTTCCHHHHHHHHHCCCCCCCSCSSCSCCSSEEEEESSTTCEEEETTTCCCCCSSSCCEEESCCCSEEEE
T ss_pred             CCCHHHHHhhCCHHHHHHHHhcCCCCCCCCCCcCCCCCceEEeccccchhhhhhhhhccCCccceeecccccceEEE
Confidence            46889999999999999999999999999999999999999999999999999999999999999999998887654

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=100.00  E-value=3.4e-36  Score=242.23  Aligned_cols=74  Identities=38%  Similarity=0.758  Sum_probs=71.3

Q ss_pred             CCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCCCCCCCCccCCccccCCc
Q 028857          124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAI  197 (202)
Q Consensus       124 ~~sd~ewr~~Lt~~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~C~~pLF~S~~KFdSg~GWPSF~~~i~~aV  197 (202)
                      .++|+|||++|||+||+|||++|||+||||+||++++.|+|+|++||+|||+|++|||||||||||+++|++++
T Consensus         3 k~s~~ewk~~Ls~~~y~Vlr~~GTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~   76 (144)
T d1l1da_           3 KPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKS   76 (144)
T ss_dssp             CCCHHHHTTTSCHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSTTS
T ss_pred             CCCHHHHHHhCCHHHHHHHHhcCCCCCCCcccccccccCceEeccccceeeehhhcccCCccceeecccccccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999997654

>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=1.3e-15  Score=123.70  Aligned_cols=69  Identities=14%  Similarity=0.112  Sum_probs=60.9

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCCeeeeccceeeccCceechhhhc---cccCcCCcceeeccCC
Q 028857           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVASG  119 (202)
Q Consensus        47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVlAaap~  119 (202)
                      -.||.++||++|++|+++|+++|++++.++.+.++| |||  |+|+.+||+||+|||   .|||.+|++- ...|+
T Consensus        91 G~QYRS~If~~~~~Q~~~a~~~i~~~~~~~~~~~~I-vTe--I~~~~~F~~AEeyHQ~Yl~Knp~~y~C~-~~~p~  162 (168)
T d1nwaa_          91 GTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKV-VTE--VSPAGDFWEAEPEHQDYLQRYPNGYTCH-FVRPG  162 (168)
T ss_dssp             SGGGCEEEEESSHHHHHHHHHHHHHHHHHCCSSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTSCCCC-CCCTT
T ss_pred             CccceeeEEeeccchHHHHHHHHHHHHHhhccCCce-EEE--EeccCCEEEcHHHHHHHHHhCCCCceeE-EecCC
Confidence            468999999999999999999999998877788999 999  999999999999999   8999987553 34443

>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.43  E-value=2.4e-14  Score=118.61  Aligned_cols=61  Identities=11%  Similarity=0.004  Sum_probs=53.6

Q ss_pred             cccceEEEeCCHHHHHHHHHHHHHHccC--CCCCCCeeeeccceeeccCceechhhhc---cccCcCCc
Q 028857           48 SVLSNLNFIHSPTTTRLFTNRLNSLAPS--LLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGG  111 (202)
Q Consensus        48 ~~~~~aIFy~de~Qk~~A~~~i~~l~~~--~~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~  111 (202)
                      .||.++||++|++|+++|+++++++++.  ..+.++| +|+  |+|+..||+||+|||   +|||.+||
T Consensus       127 ~QYRSaIf~~~~~q~~~a~~~~~~~~~~~~~~~~~~I-~Te--I~~~~~Fy~AEeyHQ~Yl~knP~~YC  192 (192)
T d1fvga_         127 SQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLI-TTD--IREGQTFYYAEDYHQQYLSKDPDGYC  192 (192)
T ss_dssp             GGGCEEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCC-CCE--ECSSCCCEECCGGGTTHHHHSTTCCC
T ss_pred             ccccceeehhhHHHHHHHHHHHHHHHHHHHhcCCCce-EEE--eecCCCEeECHHHHHHHHHHCCCCCC
Confidence            5999999999999999999988877652  2356789 999  999999999999999   99998764

>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=3.3e-14  Score=119.22  Aligned_cols=65  Identities=11%  Similarity=0.102  Sum_probs=57.2

Q ss_pred             ccccceEEEeCCHHHHHHHHHHHHHHccCC---CCCCCeeeeccceeeccCceechhhhc---cccCcCCccee
Q 028857           47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSL---LKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVL  114 (202)
Q Consensus        47 s~~~~~aIFy~de~Qk~~A~~~i~~l~~~~---~~~kpI~vTe~~I~p~~~Fy~AEeYHQ---~KNP~Ry~vVl  114 (202)
                      ..||.++|||+|++|+.+|++++++++...   ...++| +|+  |+|+.+||+||+|||   +|||.+||.+.
T Consensus       131 G~QYRSaIf~~~~eQ~~~A~~~i~~~q~~~~~~~~~~~I-vTe--I~~~~~Fy~AEeyHQ~Yl~KNP~~YC~~~  201 (211)
T d1ff3a_         131 GTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHI-TTE--IANATPFYYAEDDHQQYLHKNPYGYCGIG  201 (211)
T ss_dssp             SGGGCCEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCE--ECCCCCEEECCGGGTTHHHHSCCCCCCCC
T ss_pred             CccccceeeechhHHHHHHHHHHHHHHHHHhhccCCCce-EEE--EecCCCeeeCHHHHHHHHHhCCCCCCCCC
Confidence            369999999999999999999999886531   246799 999  999999999999999   89999988764