Citrus Sinensis ID: 028870

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Secondary Structure (PSIPRED)
ccccccccccccccccEEEcccccccccccccccccccccccccccccccccccEEEEcccEEHHHHHHHHHHHHHHHHEEEEEHccccccHHHHHHHHHHHHHcHHHHHHHcccEEEEEccccccHHccccccEEEEcccccEEEEEEEEEEcccccEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHccccEEcccccccccccccccEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEccccccEEEEEEEEEccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
mdsrvansktycsarsfasktskqgtetssepkkdistvedpfdaptynipekpvtftegASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIqddgqvrvrigspitgygqesrnraarqripnrvytdefgiEHVEVNfyirgphgagkVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Flexible Loop (DISEMBL)
mdsrvansktycsarsfasktskqgtetssepkkdistvedpfdaptyniPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKAlkriqddgqvrVRIGspitgygqesrnraarqripnrvytdefGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Low Complexity Region (SEG)
MDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSliilaglgvagaaayavFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Disordered region (IsUnstruct)
***********************************************YNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG**********RIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLML*********
Disordered Region (DISOPRED)
***************************************************EKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG******************DEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYM*****
Disordered Region (DISEMBL)
***********CSARS********************STVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGY*********RQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Disordered Region (DISPRO)
**********************************************TYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMP****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPAAPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q1G3L1	269	Probable mitochondrial im	yes	no	0.980	0.736	0.752	6e-78
Q3SZV6	244	Mitochondrial import inne	yes	no	0.643	0.532	0.318	3e-13
Q5XKA2	232	Mitochondrial import inne	N/A	no	0.876	0.762	0.274	5e-13
Q9BVV7	248	Mitochondrial import inne	yes	no	0.648	0.528	0.296	4e-11
Q5U2X7	245	Mitochondrial import inne	yes	no	0.599	0.493	0.312	8e-11
Q4X1I8	237	Mitochondrial import inne	yes	no	0.648	0.552	0.294	1e-10
Q7S8S5	251	Mitochondrial import inne	N/A	no	0.559	0.450	0.308	8e-09
Q6CAQ9	269	Mitochondrial import inne	yes	no	0.633	0.475	0.285	3e-08
Q4HZ95	229	Mitochondrial import inne	yes	no	0.831	0.733	0.247	5e-08

>sp|Q1G3L1|TIM21_ARATH Probable mitochondrial import inner membrane translocase subunit TIM21 OS=Arabidopsis thaliana GN=TIM21 PE=1 SV=1

 Score =  290 bits (741), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 149/198 (75%), Positives = 175/198 (88%)

Query: 2   DSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGA 61
           ++R  N  +    RSFAS+TSK+     ++ KK+++TVEDPFD+PTY+IPEKPVTFTEGA
Sbjct: 72  EARPKNINSSYFTRSFASRTSKEPGNQQNKAKKEVTTVEDPFDSPTYHIPEKPVTFTEGA 131

Query: 62  SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 121
           SYSL+ILAGLGVAGAA Y VFKELIF+PKEYK+F+KALKRIQDDGQVRVRIGSPI GYGQ
Sbjct: 132 SYSLVILAGLGVAGAAGYGVFKELIFQPKEYKVFDKALKRIQDDGQVRVRIGSPIKGYGQ 191

Query: 122 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIV 181
           E+RNRAARQRIPNRV+TDE G+EHVEVNFYIRGP GAGKV+TEMFKDK +K+WK+TYLIV
Sbjct: 192 ETRNRAARQRIPNRVFTDEDGVEHVEVNFYIRGPQGAGKVYTEMFKDKAEKEWKYTYLIV 251

Query: 182 EITSPYKAQLMLESYMPA 199
           EI +P  A+LMLESY+PA
Sbjct: 252 EILTPSPAKLMLESYLPA 269

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3SZV6|TIM21_BOVIN Mitochondrial import inner membrane translocase subunit Tim21 OS=Bos taurus GN=TIMM21 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 5/135 (3%)

Query: 62  SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 121
           +Y +++L G+ + G   Y +F+EL       KI+ KAL++ +   +V    G P+ GYG+
Sbjct: 109 TYLIVVLIGISITGGLFYTIFRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGE 168

Query: 122 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYL 179
            +R R  RQ +    Y  + G++H+ V FYI+G  P   G V  E+ ++ E  +++F Y+
Sbjct: 169 VTR-RGRRQLVSFIEYKKD-GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYI 226

Query: 180 IVEITSPYKAQLMLE 194
            VE+  PY   +++E
Sbjct: 227 FVEL-EPYSRTIVVE 240

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Bos taurus (taxid: 9913)

>sp|Q5XKA2|TIM21_XENLA Mitochondrial import inner membrane translocase subunit Tim21 OS=Xenopus laevis GN=timm21 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 9/186 (4%)

Query: 11  YCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAG 70
           +C+ R  ++     G  +     K +S       AP  N   K        +Y +++L G
Sbjct: 51  FCAERPIST-----GCTSLQVKDKRVSVQSTSDGAPPQNASHKVKEAGRDFTYFIVVLIG 105

Query: 71  LGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQ 130
           +GV G   Y VF+EL       KI+ +AL++ +   +V    G PI GYG+ +R R  RQ
Sbjct: 106 IGVTGGLFYVVFEELFSSSSPSKIYGEALEKCRSHPEVIGAFGEPIKGYGETTR-RGRRQ 164

Query: 131 RIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYK 188
            + +  +  + GI+ + + FYI G  P   G V  E+ ++    +++F Y+ VEI +  +
Sbjct: 165 HVSHMEFVKD-GIKCMRLKFYIEGSEPRKQGTVHIEVKENPASGKYEFQYIFVEIDTYPR 223

Query: 189 AQLMLE 194
             +++E
Sbjct: 224 RTIIIE 229

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Xenopus laevis (taxid: 8355)

>sp|Q9BVV7|TIM21_HUMAN Mitochondrial import inner membrane translocase subunit Tim21 OS=Homo sapiens GN=TIMM21 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 62  SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 121
           +Y +++L G+ + G   Y +FKEL       KI+ +AL++ +   +V    G  + GYG+
Sbjct: 109 TYLIVVLFGISITGGLFYTIFKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGE 168

Query: 122 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYL 179
            +R R  RQ +    Y  + G++H  V FYI G  P   G V+ ++ ++    ++ F Y+
Sbjct: 169 VTR-RGRRQHVRFTEYVKD-GLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYI 226

Query: 180 IVEITSPYKAQLMLE 194
            VEI S  +  +++E
Sbjct: 227 FVEIESYPRRTIIIE 241

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|Q5U2X7|TIM21_RAT Mitochondrial import inner membrane translocase subunit Tim21 OS=Rattus norvegicus GN=Timm21 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 61  ASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG 120
            +Y +++L G+ + G+  Y +FKEL        I+ KAL + +   +V    G P+ GYG
Sbjct: 107 VTYLIVVLFGVSITGSLLYTIFKELFSSSSPNIIYGKALGKCRTHPEVISVFGEPVKGYG 166

Query: 121 QESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTY 178
           + SR R  RQ +    Y +  G++ + V FYI G  P   G V  E+ ++    Q+ F Y
Sbjct: 167 EMSR-RGRRQHVSFTEYANN-GLKRIRVKFYIEGSEPGKQGTVHAEVEENPRSGQFDFRY 224

Query: 179 LIVEI 183
           + V++
Sbjct: 225 IFVDV 229

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q4X1I8|TIM21_ASPFU Mitochondrial import inner membrane translocase subunit tim21 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=tim21 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 52  EKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKI-FNKALKRIQDDGQVRV 110
           EK    T+ +   L+I+AG  + G   Y ++ E +F P      F KA++RI+DD +   
Sbjct: 74  EKVARATQQSLNFLVIVAGAVLTGGVFYLLYTE-VFSPNSRTWQFEKAVQRIKDDPRCTD 132

Query: 111 RIGS--PITGYGQESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFK 167
            +G    I  YG+ + +R  R R I   ++ D  G EH++++F++ GP  +G V   M K
Sbjct: 133 LLGDRREIKAYGESTGSRWERNRPIATSMFKDRQGREHMKMHFHVEGPLNSGIVIVHMMK 192

Query: 168 DKEDKQWKFTYLIVEI 183
             +  +W++  L +++
Sbjct: 193 PLDKDEWEYLLLALDV 208

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q7S8S5|TIM21_NEUCR Mitochondrial import inner membrane translocase subunit tim-21 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-21 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 10/123 (8%)

Query: 62  SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSP-----I 116
           ++ L+IL G+ + G  AY +F ++     +   FN+A+ RI+ D +  V + SP     I
Sbjct: 92  NFGLVIL-GVVLTGGIAYLLFTDVFSPESKTAYFNRAVDRIRADPRC-VALLSPGDPKKI 149

Query: 117 TGYGQESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWK 175
             +G+E+ N+  R R I   V  D  G+EH++++F++ GP G+G V   +   K+   W+
Sbjct: 150 AAHGEETHNKWRRARPIAATVEKDNRGVEHLKMHFHVEGPRGSGVVGLHL--TKQPGHWE 207

Query: 176 FTY 178
             Y
Sbjct: 208 HEY 210

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q6CAQ9|TIM21_YARLI Mitochondrial import inner membrane translocase subunit TIM21 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TIM21 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 56  TFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSP 115
            F + + Y  IILA LG+ G   Y +  EL+    + +IFN+A K I+ +  V   +G  
Sbjct: 102 VFFQLSWYLGIILAALGLFGLVWYYLIMELVMPSGDVRIFNRAFKEIEKNEDVMRVLGGQ 161

Query: 116 ITGYGQESRNRAARQRIP-NRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDK-- 172
           ++  G+    R  R + P ++   D++G EH+ +NFY+ G    G+   E+ ++ + K  
Sbjct: 162 LSSMGEGGGGRWGRNQPPVSKRGIDKYGREHIWMNFYVSGDINEGRAKLELVQNTDSKLS 221

Query: 173 --QWKFTYLIVEI 183
             ++ + Y +V+I
Sbjct: 222 SERFVYRYFVVDI 234

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q4HZ95|TIM21_GIBZE Mitochondrial import inner membrane translocase subunit TIM21 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=TIM21 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 91/186 (48%), Gaps = 18/186 (9%)

Query: 9   KTYCSARSFASKTSKQGT-ETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSL-- 65
           + + ++R +A++   QG   T   PK+   T   PF+   + +P K ++  E A+ +   
Sbjct: 23  RPFLASRYYATQ---QGLGATPRGPKRRAVT---PFNDNGH-VPWKQLSVAEKAARATQQ 75

Query: 66  -----IILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSP--ITG 118
                +IL GL + G   Y ++ ++     +   FN+A+ +I+ D ++   +G    I  
Sbjct: 76  SFNFGMILVGLMLTGGVGYFLWTDVFSPDSKISNFNRAVDKIRSDPRIIDVMGDSKKIAA 135

Query: 119 YGQESRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFT 177
           +G E+ N+  R R + +   TD  G +H+ ++FY+ GP   G     M K +    +++ 
Sbjct: 136 HGDETFNKWRRARPVASSETTDARGDQHIMMHFYVEGPKNNGVARLHMIKYRGHSDFEYK 195

Query: 178 YLIVEI 183
           YL V++
Sbjct: 196 YLFVDV 201

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
225427488	314	PREDICTED: TIM21-like protein, mitochond	0.930	0.598	0.829	2e-87
224136346	304	predicted protein [Populus trichocarpa]	0.985	0.654	0.798	7e-82
224067574	238	predicted protein [Populus trichocarpa]	1.0	0.848	0.792	9e-82
449494116	323	PREDICTED: uncharacterized LOC101212713	0.930	0.582	0.824	6e-79
449446321	323	PREDICTED: uncharacterized protein LOC10	0.930	0.582	0.824	7e-79
255541104	312	Import inner membrane translocase subuni	0.920	0.596	0.827	9e-79
125543152	355	hypothetical protein OsI_10791 [Oryza sa	0.821	0.467	0.795	4e-78
297721981	265	Os03g0253800 [Oryza sativa Japonica Grou	0.915	0.698	0.724	8e-78
108707219	209	expressed protein [Oryza sativa Japonica	0.915	0.885	0.724	2e-77
222617352	355	hypothetical protein OsJ_36633 [Oryza sa	0.821	0.467	0.783	4e-77

>gi|225427488|ref|XP_002263208.1| PREDICTED: TIM21-like protein, mitochondrial [Vitis vinifera] gi|296088479|emb|CBI37470.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/188 (82%), Positives = 166/188 (88%)

Query: 12  CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGL 71
           C ARS AS  SK   E  SE +KDISTVEDPFDAPTYNIPEKPVTF EGASYS+IIL GL
Sbjct: 127 CFARSCASTASKSPEEKQSETRKDISTVEDPFDAPTYNIPEKPVTFAEGASYSVIILVGL 186

Query: 72  GVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 131
           G+A AA YAVFKELIFEPKEYKIF KALKR+Q+DGQVRVRIGSPITGYGQESRNRAARQR
Sbjct: 187 GIAAAAGYAVFKELIFEPKEYKIFGKALKRVQEDGQVRVRIGSPITGYGQESRNRAARQR 246

Query: 132 IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQL 191
           I NR++TDE G+EHVEVNFYIRGPHGAGKV+TEMFKDK DKQWKFTYLI EI SP  AQL
Sbjct: 247 ISNRIWTDEDGVEHVEVNFYIRGPHGAGKVYTEMFKDKVDKQWKFTYLIAEIKSPSPAQL 306

Query: 192 MLESYMPA 199
           MLESY+PA
Sbjct: 307 MLESYVPA 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136346|ref|XP_002326838.1| predicted protein [Populus trichocarpa] gi|222835153|gb|EEE73588.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 159/199 (79%), Positives = 176/199 (88%)

Query: 1   MDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEG 60
           M++   ++   C ARSFASK SK+ T   SE +KD+STVEDPFDAPTYNIPEKPVTFTEG
Sbjct: 102 MENHGGSTINICVARSFASKASKKETRNQSETRKDLSTVEDPFDAPTYNIPEKPVTFTEG 161

Query: 61  ASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG 120
           ASYS+IILAGLGVA AAAYAVFKELIFEPKEYKIFNKALKRIQDD QVRVRIGSPITGYG
Sbjct: 162 ASYSIIILAGLGVAAAAAYAVFKELIFEPKEYKIFNKALKRIQDDSQVRVRIGSPITGYG 221

Query: 121 QESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLI 180
           QESRNRAARQRIPNR++TDE G+EHV++NFYIRGPHGAGKV  EMFKDK DKQWK+TYLI
Sbjct: 222 QESRNRAARQRIPNRIFTDEDGVEHVQINFYIRGPHGAGKVSAEMFKDKVDKQWKYTYLI 281

Query: 181 VEITSPYKAQLMLESYMPA 199
           VE   P ++QL+LESYMPA
Sbjct: 282 VETMQPSRSQLILESYMPA 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067574|ref|XP_002302508.1| predicted protein [Populus trichocarpa] gi|222844234|gb|EEE81781.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 160/202 (79%), Positives = 177/202 (87%)

Query: 1   MDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEG 60
           M++   ++   C ARSFASK SK+ T   SE KKD+STVEDPFDAPTYNIPEKPVTFTEG
Sbjct: 36  METHGESTINICFARSFASKASKKETHKQSETKKDVSTVEDPFDAPTYNIPEKPVTFTEG 95

Query: 61  ASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG 120
           ASYS+IILAGL VA AAAYAVFKELIFEPKEYKIFNKALKRIQDD QVRVRIGSPITGYG
Sbjct: 96  ASYSIIILAGLAVAAAAAYAVFKELIFEPKEYKIFNKALKRIQDDSQVRVRIGSPITGYG 155

Query: 121 QESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLI 180
           QESRNRAARQRIPNR++TDE G+EHV++NFYIRGPHGAGKV  EMFKDK DKQWK+TYLI
Sbjct: 156 QESRNRAARQRIPNRIFTDEDGVEHVQINFYIRGPHGAGKVSAEMFKDKVDKQWKYTYLI 215

Query: 181 VEITSPYKAQLMLESYMPAAPA 202
           VE+  P ++QL+LESYMPA  A
Sbjct: 216 VEVMQPSRSQLILESYMPAPVA 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494116|ref|XP_004159453.1| PREDICTED: uncharacterized LOC101212713 [Cucumis sativus]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 155/188 (82%), Positives = 170/188 (90%)

Query: 12  CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGL 71
           C AR  +SK+S++  +T SE KK+ISTVEDPFDAPTYNIPEKPVTF EGASYS IILAGL
Sbjct: 136 CFARFMSSKSSEKRGQTESESKKEISTVEDPFDAPTYNIPEKPVTFAEGASYSFIILAGL 195

Query: 72  GVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 131
           GVA AA YAVFKELIF+PKEYKIF+KALKRIQDD QVRVRIGSPITGYGQE+RNRAARQR
Sbjct: 196 GVAAAAGYAVFKELIFQPKEYKIFDKALKRIQDDSQVRVRIGSPITGYGQETRNRAARQR 255

Query: 132 IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQL 191
           IPNRV+TDE G+E VEVNFYIRGPHGAGKV+TEMFKD+ DKQWKFTYLIVE+ SP  AQL
Sbjct: 256 IPNRVWTDEDGVERVEVNFYIRGPHGAGKVYTEMFKDQVDKQWKFTYLIVEVKSPSPAQL 315

Query: 192 MLESYMPA 199
           +LESYMPA
Sbjct: 316 ILESYMPA 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446321|ref|XP_004140920.1| PREDICTED: uncharacterized protein LOC101212713 [Cucumis sativus]

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 155/188 (82%), Positives = 170/188 (90%)

Query: 12  CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGL 71
           C AR  +SK+S++  +T SE KK+ISTVEDPFDAPTYNIPEKPVTF EGASYS IILAGL
Sbjct: 136 CFARFMSSKSSEKRGQTESESKKEISTVEDPFDAPTYNIPEKPVTFAEGASYSFIILAGL 195

Query: 72  GVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 131
           GVA AA YAVFKELIF+PKEYKIF+KALKRIQDD QVRVRIGSPITGYGQE+RNRAARQR
Sbjct: 196 GVAAAAGYAVFKELIFQPKEYKIFDKALKRIQDDSQVRVRIGSPITGYGQETRNRAARQR 255

Query: 132 IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQL 191
           IPNRV+TDE G+E VEVNFYIRGPHGAGKV+TEMFKD+ DKQWKFTYLIVE+ SP  AQL
Sbjct: 256 IPNRVWTDEDGVERVEVNFYIRGPHGAGKVYTEMFKDQVDKQWKFTYLIVEVKSPSPAQL 315

Query: 192 MLESYMPA 199
           +LESYMPA
Sbjct: 316 ILESYMPA 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541104|ref|XP_002511616.1| Import inner membrane translocase subunit tim21, mitochondrial precursor, putative [Ricinus communis] gi|223548796|gb|EEF50285.1| Import inner membrane translocase subunit tim21, mitochondrial precursor, putative [Ricinus communis]

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 154/186 (82%), Positives = 169/186 (90%)

Query: 14  ARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGV 73
           ARSFASK SK+  E +SE +K++STVEDPFDAPTYNIPEKPVTFTEGASYS+IILAGLGV
Sbjct: 121 ARSFASKASKKTGEATSETRKEVSTVEDPFDAPTYNIPEKPVTFTEGASYSIIILAGLGV 180

Query: 74  AGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIP 133
           A AA YAVFKELIFEPKEYKIFNKALKRIQDD QVRVRIGSPITGYGQESRNRAARQRIP
Sbjct: 181 AAAAGYAVFKELIFEPKEYKIFNKALKRIQDDAQVRVRIGSPITGYGQESRNRAARQRIP 240

Query: 134 NRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLML 193
           N++YTDE G+EHV VNFYIRGPHGAGKV  EMFKDK DK+WK+TYLIV+   P ++QL+L
Sbjct: 241 NKIYTDEDGVEHVLVNFYIRGPHGAGKVSAEMFKDKVDKEWKYTYLIVQFLQPNQSQLIL 300

Query: 194 ESYMPA 199
           ESYMPA
Sbjct: 301 ESYMPA 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125543152|gb|EAY89291.1| hypothetical protein OsI_10791 [Oryza sativa Indica Group]

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 150/166 (90%)

Query: 34  KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 93
           KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+A  A YAVFKELIFEPKEYK
Sbjct: 190 KDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIAAVAGYAVFKELIFEPKEYK 249

Query: 94  IFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIR 153
           IF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIPN+V+TDE G+EHVEVNFYIR
Sbjct: 250 IFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPNKVWTDEDGVEHVEVNFYIR 309

Query: 154 GPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA 199
           GPHGAGKV++EMFKDK D+ WKFTYLIVEI SP++AQLMLESY+PA
Sbjct: 310 GPHGAGKVYSEMFKDKNDRSWKFTYLIVEIVSPHRAQLMLESYVPA 355

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297721981|ref|NP_001173354.1| Os03g0253800 [Oryza sativa Japonica Group] gi|108707218|gb|ABF95013.1| expressed protein [Oryza sativa Japonica Group] gi|255674378|dbj|BAH92082.1| Os03g0253800 [Oryza sativa Japonica Group]

 Score =  295 bits (755), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 156/185 (84%)

Query: 15  RSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVA 74
           R  AS +++   +   E  KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+A
Sbjct: 81  RPSASYSTQASEQNPKEGTKDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIA 140

Query: 75  GAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPN 134
             A YAVFKELIFEPKEYKIF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIPN
Sbjct: 141 AVAGYAVFKELIFEPKEYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPN 200

Query: 135 RVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 194
           +V+TDE G+EHVEVNFYIRGPHGAGKV++EMFKD  D+ WKFTYLIVEI SP++ QLMLE
Sbjct: 201 KVWTDEDGVEHVEVNFYIRGPHGAGKVYSEMFKDNNDRSWKFTYLIVEIVSPHRVQLMLE 260

Query: 195 SYMPA 199
           SY+PA
Sbjct: 261 SYVPA 265

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108707219|gb|ABF95014.1| expressed protein [Oryza sativa Japonica Group]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 156/185 (84%)

Query: 15  RSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVA 74
           R  AS +++   +   E  KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+A
Sbjct: 25  RPSASYSTQASEQNPKEGTKDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIA 84

Query: 75  GAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPN 134
             A YAVFKELIFEPKEYKIF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIPN
Sbjct: 85  AVAGYAVFKELIFEPKEYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPN 144

Query: 135 RVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 194
           +V+TDE G+EHVEVNFYIRGPHGAGKV++EMFKD  D+ WKFTYLIVEI SP++ QLMLE
Sbjct: 145 KVWTDEDGVEHVEVNFYIRGPHGAGKVYSEMFKDNNDRSWKFTYLIVEIVSPHRVQLMLE 204

Query: 195 SYMPA 199
           SY+PA
Sbjct: 205 SYVPA 209

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222617352|gb|EEE53484.1| hypothetical protein OsJ_36633 [Oryza sativa Japonica Group]

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 130/166 (78%), Positives = 148/166 (89%)

Query: 34  KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 93
           KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+A  A YAVFKELIFEPKEYK
Sbjct: 190 KDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIAAVAGYAVFKELIFEPKEYK 249

Query: 94  IFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIR 153
           IF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIPN+V+TDE G+EHVEVNFYIR
Sbjct: 250 IFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPNKVWTDEDGVEHVEVNFYIR 309

Query: 154 GPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA 199
           GPHGAGKV++EMFKD  D+ WKFTYLIVEI SP++ QLMLESY+PA
Sbjct: 310 GPHGAGKVYSEMFKDNNDRSWKFTYLIVEIVSPHRVQLMLESYVPA 355

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:1009023383	269	SD3 "AT4G00026" [Arabidopsis t	0.980	0.736	0.681	2.1e-70
UNIPROTKB|F1SNL5	243	LOC100622200 "Uncharacterized	0.544	0.452	0.330	1.5e-12
UNIPROTKB|F1MRI2	244	TIMM21 "Mitochondrial import i	0.544	0.450	0.330	3.1e-12
UNIPROTKB|Q3SZV6	244	TIMM21 "Mitochondrial import i	0.544	0.450	0.330	5e-12
UNIPROTKB|E2R117	244	TIMM21 "Uncharacterized protei	0.549	0.454	0.321	1e-11
ZFIN|ZDB-GENE-120709-89	238	si:dkey-118j18.1 "si:dkey-118j	0.549	0.466	0.313	9.6e-11
FB|FBgn0031708	236	CG7382 [Drosophila melanogaste	0.702	0.601	0.282	1.6e-10
WB|WBGene00018934	213	F56B3.11 [Caenorhabditis elega	0.465	0.441	0.312	3.2e-10
UNIPROTKB|E1BTY5	231	C2H18orf55 "Uncharacterized pr	0.549	0.480	0.304	1.3e-09
UNIPROTKB|Q9BVV7	248	TIMM21 "Mitochondrial import i	0.549	0.447	0.304	1.4e-09

TAIR|locus:1009023383 SD3 "AT4G00026" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 135/198 (68%), Positives = 160/198 (80%)

Query:     2 DSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGA 61
             ++R  N  +    RSFAS+TSK+     ++ KK+++TVEDPFD+PTY+IPEKPVTFTEGA
Sbjct:    72 EARPKNINSSYFTRSFASRTSKEPGNQQNKAKKEVTTVEDPFDSPTYHIPEKPVTFTEGA 131

Query:    62 SYSXXXXXXXXXXXXXXXXXFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 121
             SYS                 FKELIF+PKEYK+F+KALKRIQDDGQVRVRIGSPI GYGQ
Sbjct:   132 SYSLVILAGLGVAGAAGYGVFKELIFQPKEYKVFDKALKRIQDDGQVRVRIGSPIKGYGQ 191

Query:   122 ESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIV 181
             E+RNRAARQRIPNRV+TDE G+EHVEVNFYIRGP GAGKV+TEMFKDK +K+WK+TYLIV
Sbjct:   192 ETRNRAARQRIPNRVFTDEDGVEHVEVNFYIRGPQGAGKVYTEMFKDKAEKEWKYTYLIV 251

Query:   182 EITSPYKAQLMLESYMPA 199
             EI +P  A+LMLESY+PA
Sbjct:   252 EILTPSPAKLMLESYLPA 269

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0090351 "seedling development" evidence=IMP

UNIPROTKB|F1SNL5 LOC100622200 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 38/115 (33%), Positives = 64/115 (55%)

Query:    82 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 141
             F+EL       KI+ KAL++ +   +V    G P+ GYG+ +R R  RQ +    Y  + 
Sbjct:   128 FRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGETTR-RGRRQHVSFIEYVKD- 185

Query:   142 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 194
             G++H+ V FYI+G  P   G V  E+ ++ E  +++F Y+ VE+  PY   +++E
Sbjct:   186 GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYIFVEL-EPYSRTIVIE 239

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|F1MRI2 TIMM21 "Mitochondrial import inner membrane translocase subunit Tim21" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 38/115 (33%), Positives = 64/115 (55%)

Query:    82 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 141
             F+EL       KI+ KAL++ +   +V    G P+ GYG+ +R R  RQ +    Y  + 
Sbjct:   129 FRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGEVTR-RGRRQHVSFIEYKKD- 186

Query:   142 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 194
             G++H+ V FYI+G  P   G V  E+ ++ E  +++F Y+ VE+  PY   +++E
Sbjct:   187 GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYIFVEL-EPYSRTIVVE 240

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|Q3SZV6 TIMM21 "Mitochondrial import inner membrane translocase subunit Tim21" [Bos taurus (taxid:9913)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 38/115 (33%), Positives = 64/115 (55%)

Query:    82 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 141
             F+EL       KI+ KAL++ +   +V    G P+ GYG+ +R R  RQ +    Y  + 
Sbjct:   129 FRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGEVTR-RGRRQLVSFIEYKKD- 186

Query:   142 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 194
             G++H+ V FYI+G  P   G V  E+ ++ E  +++F Y+ VE+  PY   +++E
Sbjct:   187 GLKHMRVKFYIQGSEPGKQGTVHLEVKENPESGEYEFRYIFVEL-EPYSRTIVVE 240

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0030150 "protein import into mitochondrial matrix" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R117 TIMM21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 37/115 (32%), Positives = 62/115 (53%)

Query:    82 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 141
             FKEL       KI+ KAL++ +   +V    G P+ GYG+ +R R  RQ +    Y  + 
Sbjct:   128 FKELFSSSSPNKIYGKALEKCRSHPEVISIFGEPVKGYGEATR-RGRRQHVSFIEYVKD- 185

Query:   142 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 194
             G++H+ V FYI G  P   G V  E+ ++ E  +++F Y+ VE+    +  +++E
Sbjct:   186 GLKHMRVKFYIEGSEPGKQGTVHLEVKENPESGEYEFRYIFVELEPHPRRTIIIE 240

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

ZFIN|ZDB-GENE-120709-89 si:dkey-118j18.1 "si:dkey-118j18.1" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 9.6e-11, P = 9.6e-11
 Identities = 36/115 (31%), Positives = 64/115 (55%)

Query:    82 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 141
             F+EL       KI+ KA +R +   +V    G PI G+G+ SR R  RQ++ +  Y  + 
Sbjct:   123 FQELFSSSSPSKIYGKAFERCRSHPEVIGAFGEPIKGFGETSR-RGRRQQVSHLEYMKD- 180

Query:   142 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 194
             G++++ + FYI G  P   G V +E  ++ E  +++F Y+ VEI +  +  +++E
Sbjct:   181 GLKYMRLKFYIEGSEPGLRGTVHSESKENPETGKYEFRYIFVEIDTYPRRTIVIE 235

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

FB|FBgn0031708 CG7382 [Drosophila melanogaster (taxid:7227)]

 Score = 148 (57.2 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 41/145 (28%), Positives = 68/145 (46%)

Query:    50 IPEKPVTFTEGASYSXXXXXXXXXXXXXXXXXFKELIFEPKEYKIFNKALKRIQDDGQVR 109
             I EK    T+ ASY+                 F+EL        I+  AL+R+ +D +V+
Sbjct:    65 IGEKIKENTKTASYTAIIIAGLGVTCVMFFAIFRELFSSESPNNIYADALRRVVEDPRVQ 124

Query:   110 VRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDK 169
               IG+PI G+G+ SR R  RQ + +  Y +  G  H+ + FY++G      V  E  +  
Sbjct:   125 DAIGAPIKGFGETSR-RGRRQHVAHSSY-ERNGKPHMRMQFYVQGLRNKATVQLESRRSD 182

Query:   170 EDKQWKFTYLIVEITSPYKAQLMLE 194
               K  ++ YL V++    +  ++LE
Sbjct:   183 SGKL-EYRYLFVQLDHYPRTTIILE 206

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

WB|WBGene00018934 F56B3.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 30/96 (31%), Positives = 53/96 (55%)

Query:    84 ELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGI 143
             E   +     IFNKAL  ++DDG+ +   G+ I G+G+E+ +R  R+ + +  Y  + G+
Sbjct:   104 EFFAQDSPQTIFNKALALVRDDGRCQEIFGASIAGFGEET-SRGRRRHVAHHKYEKD-GM 161

Query:   144 EHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 179
             + + V F+++G    G    EM +   D QW+F Y+
Sbjct:   162 QRIRVLFHVKGDRDEGIAQAEMEQRDGDWQWRFLYV 197

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BTY5 C2H18orf55 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 35/115 (30%), Positives = 61/115 (53%)

Query:    82 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 141
             FKEL       KI+  AL++ +   +V    G PI GYG+ +R R  RQ + +  Y  + 
Sbjct:   116 FKELFSSSSPSKIYGDALEKCRSHPEVIGVFGEPIKGYGEATR-RGRRQFVSHIEYVKD- 173

Query:   142 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 194
             G++H+ + FYI G  P   G V  E+ ++ E  ++   Y+ V++ S  +  +++E
Sbjct:   174 GLKHMRLKFYIEGSEPGKQGTVHVEVKENPERGRFDVRYIFVDVDSYPRRTIVVE 228

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

UNIPROTKB|Q9BVV7 TIMM21 "Mitochondrial import inner membrane translocase subunit Tim21" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 35/115 (30%), Positives = 60/115 (52%)

Query:    82 FKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEF 141
             FKEL       KI+ +AL++ +   +V    G  + GYG+ +R R  RQ +    Y  + 
Sbjct:   129 FKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGEVTR-RGRRQHVRFTEYVKD- 186

Query:   142 GIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 194
             G++H  V FYI G  P   G V+ ++ ++    ++ F Y+ VEI S  +  +++E
Sbjct:   187 GLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYIFVEIESYPRRTIIIE 241

GO:0016021 "integral to membrane" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IMP

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1G3L1	TIM21_ARATH	No assigned EC number	0.7525	0.9801	0.7360	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003178001 SubName- Full=Chromosome chr2 scaffold_140, whole genome shotgun sequence; (258 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam08294	145	pfam08294, TIM21, TIM21	1e-24
pfam08695	117	pfam08695, Coa1, Cytochrome oxidase complex assemb	4e-04

>gnl|CDD|116878 pfam08294, TIM21, TIM21

 Score = 93.9 bits (234), Expect = 1e-24
 Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 6/131 (4%)

Query: 57  FTEGASYSLIILAGLGVAGAAAYAVFKELIFEPK-EYKIFNKALKRIQDDGQVRVRIGSP 115
            T    Y +I+L G+GV G   Y +F EL F P  + +IFN+A++ ++++ +VR  +G  
Sbjct: 5   ATTFTFYFIIVLGGVGVTGLVIYLIFSEL-FSPSGDTQIFNRAVELVEENERVRDLLGER 63

Query: 116 ITGYGQESRN---RAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDK 172
           I  YG+E+R       R  +  R Y D+ G EH+ + F++ GP   G V  E+ +  +  
Sbjct: 64  IKAYGEETRRGRWTRNRPIVSTREY-DKDGKEHIRMQFHVEGPRKKGTVHLELVESDDSG 122

Query: 173 QWKFTYLIVEI 183
           Q++F YL V++
Sbjct: 123 QYEFRYLYVDV 133

TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane. Length = 145

>gnl|CDD|219973 pfam08695, Coa1, Cytochrome oxidase complex assembly protein 1

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 28/126 (22%)

Query: 65  LIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPIT---GY-- 119
              +  +GV  A AY    E         I+   L +++   +VR  +G  I    G+  
Sbjct: 3   TFAVFAVGVGAALAYIFNYEK----TSSPIYRSTLYQLRRSPEVRELLGENIPFKSGWPW 58

Query: 120 --GQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFT 177
             G  +  +                   ++++F ++G  G G V+    ++ +   W   
Sbjct: 59  ISGSINTVQG-----------------RIDLSFPVKGSKGEGTVYLTASRESKRGPWHIH 101

Query: 178 YLIVEI 183
              + +
Sbjct: 102 EWSLTV 107

Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N-terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PF08294	145	TIM21: TIM21; InterPro: IPR013261 TIM21 interacts	100.0
KOG4836	215	consensus Uncharacterized conserved protein [Funct	100.0
PF08695	116	Coa1: Cytochrome oxidase complex assembly protein	99.67

>PF08294 TIM21: TIM21; InterPro: IPR013261 TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane []

Probab=100.00  E-value=5.8e-52  Score=335.14  Aligned_cols=142  Identities=39%  Similarity=0.653  Sum_probs=78.1

Q ss_pred             CceeeeecceehhhhHHHHHHHHHhHhhhhhhhccCCcchHHHHHHHHHHhcchhhHhhhCCCceeccccCc-ccccccc
Q 028870           53 KPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESR-NRAARQR  131 (202)
Q Consensus        53 K~~~at~~~~~~~vIl~G~gltg~v~Y~l~~ELf~~~s~~~iy~~Al~~ik~d~~V~~~LG~PI~ayG~~s~-~r~~R~r  131 (202)
                      |++|++++++|++|||+|+||+|+++|+|++|||+++||+.+||+|+++|++||+|+++||+||+|||++++ +||+|||
T Consensus         1 Kv~~~~~~~~~~~vil~G~gl~g~v~Y~l~sELFs~~s~~~ifn~A~~~i~~d~~v~~~LG~~ikayGe~~~~~Rw~R~R   80 (145)
T PF08294_consen    1 KVKRATKQTSYFGVILAGLGLTGLVIYALFSELFSPSSPTRIFNRAVDRIKKDPRVQDLLGEPIKAYGEETGRNRWRRNR   80 (145)
T ss_dssp             -------------------------------------HHHHHHHHHHHHHHH-HHHHHHT----EEEE-EEE-SS-EEE-
T ss_pred             ChheehcceeeeEeeeehHHHHHHhHHHHhHHHhCCCCchHHHHHHHHHHhcCHHHHHHhCCCeEEecCCCCCCcccccC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999998 8999988


Q ss_pred             -ccceEEECCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCeeEEEecCC
Q 028870          132 -IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESY  196 (202)
Q Consensus       132 -I~~~~~~d~~G~eh~~m~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL~VdV~g~~r~~Iile~~  196 (202)
                       +.++.+.|++|++||+|+|||+||+|+|+||+||+|++.+++|||+||+||++|++  +|+|||+
T Consensus        81 ~~~s~~~~d~~G~eh~~m~F~V~G~~~~G~V~~e~~k~~~~~~~e~~yL~vdv~g~~--ri~l~dn  144 (145)
T PF08294_consen   81 PIVSHREYDKDGREHMRMKFYVEGPRGKGVVHLEMVKDDGSGEYEYRYLYVDVPGHK--RIYLEDN  144 (145)
T ss_dssp             ---EEEEE-TTS-EEEEEEEEEE-SS-EEEEEEEEE--SS-SS-EEEEEEEE-TTS----EEEE--
T ss_pred             CccceEEEcCCCCEEEEEEEEEEeCCCeEEEEEEEEECCCCCCeeEEEEEEecCCCe--EEEEEcC
Confidence             66666779999999999999999999999999999986669999999999999876  8999984

; PDB: 2CIU_A.

>KOG4836 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.1e-43  Score=294.43  Aligned_cols=146  Identities=30%  Similarity=0.580  Sum_probs=138.1

Q ss_pred             CCCCceeeeecceehhhhHHHHHHHHHhHhhhhhhhccCCcchHHHHHHHHHHhcchhhHhhhCCCceeccccCcccccc
Q 028870           50 IPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAAR  129 (202)
Q Consensus        50 ~~eK~~~at~~~~~~~vIl~G~gltg~v~Y~l~~ELf~~~s~~~iy~~Al~~ik~d~~V~~~LG~PI~ayG~~s~~r~~R  129 (202)
                      .+.||++++.+++|+.+||+|+||+|+++|+|++|||++++|+.+||+||++|++||+|+.++|++||||||+++ |+||
T Consensus        68 ~~gkVke~s~nt~~~~iVI~GiGv~g~~iY~i~~ElFs~~sp~~ifn~Al~~v~~~~~~~~ifG~~iKgfGE~t~-rgRR  146 (215)
T KOG4836|consen   68 FGGKVKEASSNTFYYIIVIAGIGVTGAFIYAIFGELFSSSSPQTIFNRALELVRANPEVQGIFGESIKGFGEETR-RGRR  146 (215)
T ss_pred             CccchhhccccceeeeeeeeeccHHHHhHHHHHHHHhcCCCcHHHHHHHHHHHhcChHHhhHhhhhhhhhhhhhc-Cccc
Confidence            445999999999999999999999999999999999999999999999999999999999999999999999998 6789


Q ss_pred             ccccceEEECCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCeeEEEecCCCCC
Q 028870          130 QRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA  199 (202)
Q Consensus       130 ~rI~~~~~~d~~G~eh~~m~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL~VdV~g~~r~~Iile~~~p~  199 (202)
                      +||+|..| |+||.+|++|+|||+|.+.+|+|+++++.+  +|+|+|+||+|||++++|.+||+||+-|.
T Consensus       147 ~hVa~~~y-dk~G~~h~~m~Fhv~g~~~~g~v~~~~k~~--~g~~~~~flfVdv~~ypr~tii~~dnr~~  213 (215)
T KOG4836|consen  147 QHVAHHKY-DKDGMEHLRMQFHVEGSEPQGHVFARLKEV--DGDYEWDFLFVDVARYPRTTIILEDNRVR  213 (215)
T ss_pred             ceeeeeee-ecCCceEEEEEEEEEcCCcccchhhhhhcc--CCCCceeEEEEecCCCceeEEEccCCccc
Confidence            99999999 899999999999999999999999999885  78888888999999999999999998654

>PF08695 Coa1: Cytochrome oxidase complex assembly protein 1; InterPro: IPR014807 Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly

Probab=99.67  E-value=1.1e-15  Score=117.93  Aligned_cols=106  Identities=25%  Similarity=0.381  Sum_probs=80.1

Q ss_pred             HHHHHHHhHhhhhhhhccCCcchHHHHHHHHHHhcchhhHhhhCC--Cceeccc-cCccccccccccceEEECCCCceEE
Q 028870           70 GLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGS--PITGYGQ-ESRNRAARQRIPNRVYTDEFGIEHV  146 (202)
Q Consensus        70 G~gltg~v~Y~l~~ELf~~~s~~~iy~~Al~~ik~d~~V~~~LG~--PI~ayG~-~s~~r~~R~rI~~~~~~d~~G~eh~  146 (202)
                      ++++++.++|.+..++    +.+.+|+.|++.+++||+|+++||+  ||+.... .+++          ... .  ..++
T Consensus         7 ~~~~~~~~~~~~~~~~----~~s~~y~~al~~l~~~~~v~~~LGe~ipi~~~~~~i~G~----------~~~-~--~g~a   69 (116)
T PF08695_consen    7 VIGWGVFLFYAINSEK----KSSEYYKEALEQLRSNPEVVEALGENIPIKDGWPWISGS----------INT-S--KGRA   69 (116)
T ss_pred             eHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhCHHHHHHcCCCCCcccCcccccce----------eec-c--CcEE
Confidence            3344455667777776    6678899999999999999999999  8886442 2331          121 2  4468


Q ss_pred             EEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCeeEEEec
Q 028870          147 EVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE  194 (202)
Q Consensus       147 ~m~F~V~Gp~g~G~V~le~~k~~~~g~wey~yL~VdV~g~~r~~Iile  194 (202)
                      .++|+|+||+|+|+||+++.++.....|+|..|.|.++  +.+.|-|-
T Consensus        70 ~~~~pV~G~k~~G~v~~~a~r~~~~~~W~~~~~~v~~~--~g~~I~L~  115 (116)
T PF08695_consen   70 DLSFPVKGPKGKGTVYVEATRSGGKDPWEILRLEVEID--DGQVIDLL  115 (116)
T ss_pred             EEEEEEEcCCCcEEEEEEEEecCCCCceEEEEEEEEeC--CCCEEeCc
Confidence            89999999999999999999975444599999999998  33455553

It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence []. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
2ciu_A	127	TIM21P, import inner membrane translocase subunit	2e-26

>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae} Length = 127

 Score = 97.4 bits (242), Expect = 2e-26
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 93  KIFNKALKRIQDDGQVRVRI--------GSPITGYGQE-SRNRAARQR-IPNRVYTDEFG 142
           ++FN+A+  ++ +  +R  +           +  YG+  + ++  R R I +    D+ G
Sbjct: 9   QLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEG 68

Query: 143 IEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSP 186
             H  + F++        V  E  + K++ Q  F  + V++   
Sbjct: 69  RTHHYMRFHVESKKKIALVHLEAKESKQNYQPDFINMYVDVPGE 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
2ciu_A	127	TIM21P, import inner membrane translocase subunit	100.0

>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-41  Score=267.30  Aligned_cols=109  Identities=19%  Similarity=0.320  Sum_probs=101.5

Q ss_pred             ccCCcchHHHHHHHHHHhcchhhHhhh----C----CCceecccc-Ccccccccc-ccceEEECCCCceEEEEEEEEEcC
Q 028870           86 IFEPKEYKIFNKALKRIQDDGQVRVRI----G----SPITGYGQE-SRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGP  155 (202)
Q Consensus        86 f~~~s~~~iy~~Al~~ik~d~~V~~~L----G----~PI~ayG~~-s~~r~~R~r-I~~~~~~d~~G~eh~~m~F~V~Gp  155 (202)
                      |+++|++.+||+||++|++||+|+++|    |    +||+|||++ +++||+||| |+|++++|++|++||+|+|||+||
T Consensus         2 ~spss~t~~FnrAv~rIk~Dp~v~~~L~~~~G~~~~~~IkayGe~~t~~rw~R~Rpi~s~~~~d~dG~eH~rm~F~VeG~   81 (127)
T 2ciu_A            2 AMGSGDTQLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEGRTHHYMRFHVESK   81 (127)
T ss_dssp             ---CHHHHHHHHHHHHHHHCHHHHHHTTCCCBTTBCCCCEEEECEEECSSCEEECCCCEEEEECTTSCEEEEEEEEEECS
T ss_pred             cCCCCchhHHHHHHHHHhcCHHHHHHhcccCCCCCCcceEEecccCCCChhhhccccceEEEECCCCCEEEEEEEEEEcC
Confidence            467789999999999999999999999    6    899999999 889999999 999999999999999999999999


Q ss_pred             CCceEEEEEEEEcCCCCceEEEEEEEEECCCCeeEEEecCC
Q 028870          156 HGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESY  196 (202)
Q Consensus       156 ~g~G~V~le~~k~~~~g~wey~yL~VdV~g~~r~~Iile~~  196 (202)
                      +++|+||+||+|+++.++|+|+||+|||+|++  +||||+.
T Consensus        82 ~~~G~V~le~~k~~~~~~~ef~Yl~vDV~g~~--Ri~Le~p  120 (127)
T 2ciu_A           82 KKIALVHLEAKESKQNYQPDFINMYVDVPGEK--RYYLIKP  120 (127)
T ss_dssp             SCEEEEEEEEECCSSCSSCEEEEEEEECTTSC--CEEEECC
T ss_pred             CCcEEEEEEEEecCCCCceEEEEEEEEeCCCc--eEEEECC
Confidence            99999999999988899999999999999976  7888884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00