Citrus Sinensis ID: 028899

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MADNNPAGVDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEEETEMDPDIAAMMGFGSFHSSKK
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHccHHHHcccEEEEcccccccccccccccccccccccHHHHHHHHccHHHHHHHcccccEEcccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccEccHHHcccEEEEcccccccccccEEcccccEEEcccHHHHHHHccHHHHHHcccccEEEHccHHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
madnnpagvdntfrrkFDREEYLERAREREReeadgrskskakgppvqrkplkhrdyVVDLEsrlgktqvvtpiaplsqqagyycSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKkrkvpgsfseqdLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEeetemdpdiaammgfgsfhsskk
Flexible Loop (DISEMBL)
madnnpagvdntfrrkfdreeYLERarerereeadgrskskakgppvqrkplkhrDYVVDLEsrlgktqvvtpiaplsqqagYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFEllkkrkvpgsfseqdlderiikqqeeeeeRRRQrrekkkekkkekaaveeetemdpdiaammgfgsfhsskk
Low Complexity Region (SEG)
MADNNPAGVDNTFRRKFDreeylerarerereeADGRSKSKAKGPPVQRKPLKHRDYVVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKKRKVPGSFSEQDLDeriikqqeeeeerrrqrrekkkekkkekaaveeeTEMDPDIAAMMGFGSFHSSKK
Disordered region (IsUnstruct)
*******************************************************DYVVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGK*************************************************************************************************
Disordered Region (DISOPRED)
***********TFRRKFDREEY*************************************DLESRLGKTQVVT*****SQQ*GYYCSVCECVVKDSANYLDHINGKK****************DQVRERFE***********************************************************AMMGFGSFH****
Disordered Region (DISEMBL)
********VDNTFRRKFDREEYLE**************************PLKHRDYVVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKKRKVPGSFSEQDLDERIIKQQ****************************EMDPDIAAMMGFGSFHSSKK
Disordered Region (DISPRO)
**************RKFDREEYLERAREREREEADG******KGPPVQRKPLKHRDYVVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRRE************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADNNPAGVDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKKRKVPGSFSEQDLDERIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDPDIAAMMGFGSFHSSKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9CPW7	199	Zinc finger matrin-type p	yes	no	0.935	0.949	0.51	1e-41
Q96NC0	199	Zinc finger matrin-type p	yes	no	0.935	0.949	0.51	1e-41
P34670	407	Putative zinc finger prot	no	no	0.925	0.459	0.413	1e-30
Q09776	173	U4/U6.U5 small nuclear ri	yes	no	0.683	0.797	0.337	1e-13
Q12368	194	23 kDa U4/U6.U5 small nuc	yes	no	0.886	0.922	0.277	8e-11

>sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2 SV=1

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/200 (51%), Positives = 144/200 (72%), Gaps = 11/200 (5%)

Query: 7   AGVDNT-FRRKFDREEYLERARER---EREEADGRSKSKAKGPPVQRKPLKHRDYVVDLE 62
           +G  N  FRRK+D++EY + A +R   ERE+ DG+        PV+R+ L+HRDY VDLE
Sbjct: 5   SGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQ-----PVKRELLRHRDYKVDLE 59

Query: 63  SRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 122
           S+LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L
Sbjct: 60  SKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTL 119

Query: 123 DQVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEEET 182
           DQV++RFE + K+K+     + D +ER +K+  EEEE+ +  +++K+++KK +A  +   
Sbjct: 120 DQVKKRFE-VNKKKMEEKQKDYDFEER-MKELREEEEKAKAYKKEKQKEKKRRAEEDLTF 177

Query: 183 EMDPDIAAMMGFGSFHSSKK 202
           E D ++AA+MGF  F S+KK
Sbjct: 178 EEDDEMAAVMGFSGFGSTKK 197

Mus musculus (taxid: 10090)

>sp|Q96NC0|ZMAT2_HUMAN Zinc finger matrin-type protein 2 OS=Homo sapiens GN=ZMAT2 PE=1 SV=1

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/200 (51%), Positives = 144/200 (72%), Gaps = 11/200 (5%)

Query: 7   AGVDNT-FRRKFDREEYLERARER---EREEADGRSKSKAKGPPVQRKPLKHRDYVVDLE 62
           +G  N  FRRK+D++EY + A +R   ERE+ DG+        PV+R+ L+HRDY VDLE
Sbjct: 5   SGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQ-----PVKRELLRHRDYKVDLE 59

Query: 63  SRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 122
           S+LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L
Sbjct: 60  SKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTL 119

Query: 123 DQVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEEET 182
           DQV++RFE + K+K+     + D +ER +K+  EEEE+ +  +++K+++KK +A  +   
Sbjct: 120 DQVKKRFE-VNKKKMEEKQKDYDFEER-MKELREEEEKAKAYKKEKQKEKKRRAEEDLTF 177

Query: 183 EMDPDIAAMMGFGSFHSSKK 202
           E D ++AA+MGF  F S+KK
Sbjct: 178 EEDDEMAAVMGFSGFGSTKK 197

Homo sapiens (taxid: 9606)

>sp|P34670|YO14_CAEEL Putative zinc finger protein ZK686.4 OS=Caenorhabditis elegans GN=ZK686.4 PE=2 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 130/203 (64%), Gaps = 16/203 (7%)

Query: 14  RRKFDREEYLERARER---EREEADGR-SKSKAKGPPVQRKPLKHRDYVVDLESRLGKTQ 69
           RR +D +EY   A++R   E+E  D R  K K   P V+R+ L+ R+Y VDL+S++GK+ 
Sbjct: 207 RRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREYKVDLDSKVGKSV 266

Query: 70  VVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERF 129
           V+T   P ++  G+YC VC+CVVKDS N+LDHINGK HQR +GMSM+ +++++  VRERF
Sbjct: 267 VITKATPSAETGGFYCDVCDCVVKDSINFLDHINGKNHQRNIGMSMKTKKSTVADVRERF 326

Query: 130 ELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQ-RREKKKEKKKEK---------AAVE 179
           +L+K +K       Q   E++++  +EEE R    +++KK + +K K            E
Sbjct: 327 KLMKDKKEREKKEAQ--VEQLLEDVQEEEARMADFKKDKKTDNRKRKRDTRKDEEEDDDE 384

Query: 180 EETEMDPDIAAMMGFGSFHSSKK 202
           +++ +DP+I AMMGF  F +SK+
Sbjct: 385 DDSGLDPEIRAMMGFSGFSTSKR 407

Caenorhabditis elegans (taxid: 6239)

>sp|Q09776|SNU23_SCHPO U4/U6.U5 small nuclear ribonucleoprotein component snu23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snu23 PE=3 SV=4

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 10/148 (6%)

Query: 59  VDLESRLGKTQVVTPIAPLSQQ---AGYYCSVCECVVKDSANYLDHINGKKHQRALGMSM 115
           +D E  + KT ++   A + ++   AG+YC  C    KDS ++LDH+N  +H R     +
Sbjct: 28  IDFEKDVNKTTILPAGASVGRRGRGAGWYCEACNETYKDSLSWLDHLNSTQHLRKTRTVI 87

Query: 116 RVERASLDQVRERFELLKKRKV-PGSFSEQ-DLDERIIKQQEEEEERRRQRREKKKEKKK 173
             +RA+L++V+ER E  +++ + P   SE+  L ER+ +  +E E ++ +R++KK  K+K
Sbjct: 88  IEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERYHQELEAKKLRRKQKKVNKEK 147

Query: 174 EKA-AVEEETEMDPDIAAMMGFGSFHSS 200
                V E TE+    AA+MG  SF S+
Sbjct: 148 NSPRLVGENTEL----AAIMGISSFGST 171

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12368|SNU23_YEAST 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNU23 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 30/209 (14%)

Query: 9   VDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHR----DYVVDLESR 64
           + N  RR +DREEY E+AR       D RS  KA   P++ + LK +    D+++    +
Sbjct: 1   MSNFGRRTWDREEYAEQARSG----YDDRS-LKATLTPIELQALKSKYTNYDHLIKGSLK 55

Query: 65  -LGKTQVVTPIAPLS-----QQAGYYCSVCECVVKDSANYLDHINGKKH----QRALGMS 114
            L K ++      LS     ++ G+YC +C    KD+  Y+DH+N K H    +      
Sbjct: 56  DLNKRKLTANTESLSSFKRGKKFGFYCDICNLTFKDTLQYIDHLNHKVHAIKFENLFDEP 115

Query: 115 MRVERASLDQV-RERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKK 173
           + ++    D V +E FEL             +L +  ++ +  E + +R+R      +K 
Sbjct: 116 LIIDIRDNDDVPQEEFEL----------CYHNLIKDFVEVRSMETQSKRKRLLDTDVEKA 165

Query: 174 EKAAVEEETEMDPDIAAMMGFGSFHSSKK 202
           +K A +   E +  ++ MMGF +F +SKK
Sbjct: 166 KKVATKPSIESESKVSQMMGFSNFATSKK 194

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
224125038	197	predicted protein [Populus trichocarpa]	0.970	0.994	0.831	3e-78
357123026	201	PREDICTED: zinc finger matrin-type prote	0.985	0.990	0.819	1e-77
449490847	202	PREDICTED: zinc finger matrin-type prote	0.985	0.985	0.840	2e-77
326509317	202	predicted protein [Hordeum vulgare subsp	0.985	0.985	0.809	1e-76
194701682	201	unknown [Zea mays] gi|194702922|gb|ACF85	0.985	0.990	0.783	2e-76
449454034	202	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.985	0.985	0.830	9e-76
242051785	201	hypothetical protein SORBIDRAFT_03g00340	0.985	0.990	0.788	2e-75
326499590	200	predicted protein [Hordeum vulgare subsp	0.975	0.985	0.804	7e-75
115456395	202	Os03g0831900 [Oryza sativa Japonica Grou	0.985	0.985	0.83	1e-74
255542866	202	zinc finger protein, putative [Ricinus c	1.0	1.0	0.871	2e-74

>gi|224125038|ref|XP_002319487.1| predicted protein [Populus trichocarpa] gi|222857863|gb|EEE95410.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 168/202 (83%), Positives = 184/202 (91%), Gaps = 6/202 (2%)

Query: 1   MADNNPAG-VDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVV 59
           MA+NN  G VDNTFRRKFD EEYLERARERE++EA+GR KSK+KGPPVQRKPLKHRDY V
Sbjct: 1   MANNNAGGSVDNTFRRKFDPEEYLERAREREKQEAEGRGKSKSKGPPVQRKPLKHRDYEV 60

Query: 60  DLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 119
           DL+SRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLDSRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 120 ASLDQVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVE 179
           ASL QV+ERFE LKKR+ PGSF+EQDLDERI+KQQEEEEER+RQRRE+KKEKK+E+ A  
Sbjct: 121 ASLQQVQERFEKLKKRREPGSFTEQDLDERILKQQEEEEERKRQRRERKKEKKEEEEA-- 178

Query: 180 EETEMDPDIAAMMGFGSFHSSK 201
              ++DPDIAAMMGFG F S K
Sbjct: 179 ---DIDPDIAAMMGFGGFGSKK 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357123026|ref|XP_003563214.1| PREDICTED: zinc finger matrin-type protein 2-like [Brachypodium distachyon]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/199 (81%), Positives = 181/199 (90%)

Query: 4   NNPAGVDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVDLES 63
            NP GVDNTFRRKFD+EEYLERAR+RE++E D   K K +GPPVQR+PLKHRDY VDLES
Sbjct: 3   GNPTGVDNTFRRKFDKEEYLERARQREQDEKDEARKGKDRGPPVQRQPLKHRDYEVDLES 62

Query: 64  RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLD 123
           RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL+
Sbjct: 63  RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLE 122

Query: 124 QVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEEETE 183
           QV++RFE LKKRK PGSFSEQDLDERI+KQQ+EEEER+RQR+EKKKEKKKE+A   E  +
Sbjct: 123 QVQKRFESLKKRKDPGSFSEQDLDERILKQQQEEEERKRQRKEKKKEKKKEQAGQNEPED 182

Query: 184 MDPDIAAMMGFGSFHSSKK 202
           +DPD+AAMMGFG F +SKK
Sbjct: 183 IDPDVAAMMGFGGFGTSKK 201

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490847|ref|XP_004158724.1| PREDICTED: zinc finger matrin-type protein 2-like [Cucumis sativus]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 169/201 (84%), Positives = 186/201 (92%), Gaps = 2/201 (0%)

Query: 2   ADNNPAGVDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVDL 61
             N   GVDNTFRRKFDREEYLERAR+RE++E D R KSK KGPPVQRKPLKHRDY VDL
Sbjct: 4   TSNTVTGVDNTFRRKFDREEYLERARDREKQEVD-RVKSKLKGPPVQRKPLKHRDYEVDL 62

Query: 62  ESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERAS 121
           ESRLGKTQVVTP+APLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERAS
Sbjct: 63  ESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERAS 122

Query: 122 LDQVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEEE 181
           L+QV+ERFE+LKKRK PGSF+EQDL+ERI+KQQ+EEE+R+R+RRE+KKEKKKEKAA EEE
Sbjct: 123 LEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAA-EEE 181

Query: 182 TEMDPDIAAMMGFGSFHSSKK 202
            E+DPD+AAMMGFG F SSKK
Sbjct: 182 PEVDPDVAAMMGFGGFRSSKK 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326509317|dbj|BAJ91575.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 161/199 (80%), Positives = 179/199 (89%)

Query: 4   NNPAGVDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVDLES 63
            NP+GVDNTFRRKFD+EEYLERAR+RER+E D   + K +GPPVQR+PLKHRDY VDLES
Sbjct: 3   GNPSGVDNTFRRKFDKEEYLERARQRERDEKDEARRGKDRGPPVQRQPLKHRDYEVDLES 62

Query: 64  RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLD 123
           RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL+
Sbjct: 63  RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLE 122

Query: 124 QVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEEETE 183
           QV++RFE LKKRK P SFSEQDLDERI KQQ+EEEE++RQRREKKKEKKKE+A   E  +
Sbjct: 123 QVQKRFEALKKRKDPASFSEQDLDERIWKQQQEEEEKKRQRREKKKEKKKEQAGQNEPED 182

Query: 184 MDPDIAAMMGFGSFHSSKK 202
           +DPD+AAMMGFG F +S K
Sbjct: 183 IDPDVAAMMGFGGFGTSSK 201

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194701682|gb|ACF84925.1| unknown [Zea mays] gi|194702922|gb|ACF85545.1| unknown [Zea mays] gi|414875974|tpg|DAA53105.1| TPA: hypothetical protein ZEAMMB73_409857 [Zea mays]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/199 (78%), Positives = 178/199 (89%)

Query: 4   NNPAGVDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVDLES 63
            NP GVDNT RRKFD+EEYLERAR+RE+ E D   K K +GPPVQR+PLKHRDY VDL+S
Sbjct: 3   GNPVGVDNTSRRKFDKEEYLERARQREQREKDEARKGKERGPPVQRQPLKHRDYEVDLDS 62

Query: 64  RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLD 123
           RLGKTQVVTPIAPL+QQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL+
Sbjct: 63  RLGKTQVVTPIAPLNQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLE 122

Query: 124 QVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEEETE 183
           QV++RFE LKKRK P +F+E+DLDERI+KQQ++EEER+RQR+EKKKEKK+E+A   E  +
Sbjct: 123 QVQKRFEALKKRKDPSAFTEEDLDERIMKQQQDEEERKRQRKEKKKEKKREQATQHEPED 182

Query: 184 MDPDIAAMMGFGSFHSSKK 202
           +DPDIAAMMGFG F SSKK
Sbjct: 183 VDPDIAAMMGFGGFGSSKK 201

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454034|ref|XP_004144761.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger matrin-type protein 2-like [Cucumis sativus]

 Score =  288 bits (737), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 167/201 (83%), Positives = 184/201 (91%), Gaps = 2/201 (0%)

Query: 2   ADNNPAGVDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVDL 61
             N   GVDNTFRRKFDREEYLERAR+RE++E D R KSK KGPPVQRKPLKHRDY VDL
Sbjct: 4   TSNTVTGVDNTFRRKFDREEYLERARDREKQEVD-RVKSKLKGPPVQRKPLKHRDYEVDL 62

Query: 62  ESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERAS 121
           ESRLGKTQVVTP+APLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERAS
Sbjct: 63  ESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERAS 122

Query: 122 LDQVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEEE 181
           L+QV ERFE+LKKR+  GSF+EQDL+ERI+KQQ+EEE+R+R+RRE+KKEKKKEKAA EEE
Sbjct: 123 LEQVXERFEVLKKRETSGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAA-EEE 181

Query: 182 TEMDPDIAAMMGFGSFHSSKK 202
            E+DPD+AAMMGFG F SSKK
Sbjct: 182 PEVDPDVAAMMGFGGFRSSKK 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051785|ref|XP_002455038.1| hypothetical protein SORBIDRAFT_03g003400 [Sorghum bicolor] gi|241927013|gb|EES00158.1| hypothetical protein SORBIDRAFT_03g003400 [Sorghum bicolor]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 157/199 (78%), Positives = 177/199 (88%)

Query: 4   NNPAGVDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVDLES 63
             P GVDNT RRKFD+EEYLERAR+RE+ E D   K K +GPPVQR+PLKHRDY VDL+S
Sbjct: 3   GTPVGVDNTSRRKFDKEEYLERARQREQREKDEARKGKERGPPVQRQPLKHRDYEVDLDS 62

Query: 64  RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLD 123
           RLGKTQVVTPIAPL+QQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL+
Sbjct: 63  RLGKTQVVTPIAPLNQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLE 122

Query: 124 QVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEEETE 183
           QV++RFE LKKRK P +F+EQDLDERI+KQ +EEEER+RQR+EKKKEKK+E+AA  E  +
Sbjct: 123 QVQKRFEALKKRKDPSAFTEQDLDERIMKQLQEEEERKRQRKEKKKEKKREQAAQHEPED 182

Query: 184 MDPDIAAMMGFGSFHSSKK 202
           +DPDIAAMMGFG F SSKK
Sbjct: 183 VDPDIAAMMGFGGFGSSKK 201

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326499590|dbj|BAJ86106.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  285 bits (729), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 160/199 (80%), Positives = 178/199 (89%), Gaps = 2/199 (1%)

Query: 4   NNPAGVDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVDLES 63
            NP+GVDNTFRRKFD+EEYLERAR+RER+E D     + +GPPVQR+PLKHRDY VDLES
Sbjct: 3   GNPSGVDNTFRRKFDKEEYLERARQRERDEKD--EARRDRGPPVQRQPLKHRDYEVDLES 60

Query: 64  RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLD 123
           RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL+
Sbjct: 61  RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLE 120

Query: 124 QVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEEETE 183
           QV++RFE LKKRK P SFSEQDLDERI KQQ+EEEE++RQRREKKKEKKKE+A   E  +
Sbjct: 121 QVQKRFEALKKRKDPASFSEQDLDERIWKQQQEEEEKKRQRREKKKEKKKEQAGQNEPED 180

Query: 184 MDPDIAAMMGFGSFHSSKK 202
           +DPD+AAMMGFG F +S K
Sbjct: 181 IDPDVAAMMGFGGFGTSSK 199

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115456395|ref|NP_001051798.1| Os03g0831900 [Oryza sativa Japonica Group] gi|28372669|gb|AAO39853.1| unknown protein [Oryza sativa Japonica Group] gi|31249762|gb|AAP46254.1| unknown protein [Oryza sativa Japonica Group] gi|108711920|gb|ABF99715.1| expressed protein [Oryza sativa Japonica Group] gi|113550269|dbj|BAF13712.1| Os03g0831900 [Oryza sativa Japonica Group] gi|125546314|gb|EAY92453.1| hypothetical protein OsI_14186 [Oryza sativa Indica Group] gi|125588516|gb|EAZ29180.1| hypothetical protein OsJ_13239 [Oryza sativa Japonica Group] gi|215765481|dbj|BAG87178.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 166/200 (83%), Positives = 182/200 (91%), Gaps = 1/200 (0%)

Query: 4   NNPAGVDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVDLES 63
           +NP GVDNTFRRKFD+EEYLERAR+REREE +   K K KGPPVQR+PLKHRDY VDLES
Sbjct: 3   SNPVGVDNTFRRKFDKEEYLERARQREREEKEEARKGKEKGPPVQRQPLKHRDYEVDLES 62

Query: 64  RLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLD 123
           RLGKTQVVTPIAPLSQQAGYYC VCECVVKDSANYLDHINGKKHQRALGMSMRVERASL+
Sbjct: 63  RLGKTQVVTPIAPLSQQAGYYCKVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLE 122

Query: 124 QVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEE-ET 182
           QV++RFE LKKRK PGSFSEQDLDERI+KQQ+E+EER+RQR+EKKKEKKKE AA  E E 
Sbjct: 123 QVQKRFESLKKRKDPGSFSEQDLDERILKQQQEDEERKRQRKEKKKEKKKELAAQNEPEE 182

Query: 183 EMDPDIAAMMGFGSFHSSKK 202
           ++DPD+AAMMGFG F SSKK
Sbjct: 183 DIDPDVAAMMGFGGFRSSKK 202

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542866|ref|XP_002512496.1| zinc finger protein, putative [Ricinus communis] gi|223548457|gb|EEF49948.1| zinc finger protein, putative [Ricinus communis]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 176/202 (87%), Positives = 190/202 (94%)

Query: 1   MADNNPAGVDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVD 60
           MA NN  GVDNTFRRKFD+EEYLERARERE+EEA+GR KSK+KGPPVQRKPLKHRDY VD
Sbjct: 1   MAHNNAVGVDNTFRRKFDKEEYLERAREREKEEAEGRFKSKSKGPPVQRKPLKHRDYQVD 60

Query: 61  LESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERA 120
           L+SRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERA
Sbjct: 61  LDSRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERA 120

Query: 121 SLDQVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEE 180
           SL QV+ERFE LKKRK PGSF+EQDLDERI+KQQ+EEEER+RQRRE+KKEKKKEKAA EE
Sbjct: 121 SLQQVQERFESLKKRKSPGSFTEQDLDERILKQQQEEEERKRQRRERKKEKKKEKAAEEE 180

Query: 181 ETEMDPDIAAMMGFGSFHSSKK 202
           E ++DPD+AAMMGFG F SSKK
Sbjct: 181 EADIDPDVAAMMGFGGFRSSKK 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2074524	202	AT3G05760 [Arabidopsis thalian	0.717	0.717	0.739	2e-61
ZFIN|ZDB-GENE-030131-3197	198	zmat2 "zinc finger, matrin typ	0.678	0.691	0.535	2.2e-38
UNIPROTKB|Q5ZIF6	199	ZMAT2 "Uncharacterized protein	0.623	0.633	0.557	8.2e-37
UNIPROTKB|F1NDH4	199	ZMAT2 "Uncharacterized protein	0.618	0.628	0.561	1e-36
UNIPROTKB|Q0P584	199	ZMAT2 "Uncharacterized protein	0.623	0.633	0.557	1.3e-36
UNIPROTKB|E2QZ35	199	ZMAT2 "Uncharacterized protein	0.623	0.633	0.557	1.3e-36
UNIPROTKB|Q96NC0	199	ZMAT2 "Zinc finger matrin-type	0.623	0.633	0.557	1.3e-36
UNIPROTKB|I3LF90	199	ZMAT2 "Uncharacterized protein	0.623	0.633	0.557	1.3e-36
MGI|MGI:1913742	199	Zmat2 "zinc finger, matrin typ	0.623	0.633	0.557	1.3e-36
RGD|1583592	199	Zmat2 "zinc finger, matrin typ	0.623	0.633	0.557	3.5e-36

TAIR|locus:2074524 AT3G05760 [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 108/146 (73%), Positives = 122/146 (83%)

Query:     2 ADNNPAGVDNTFRRKFDXXXXXXXXXXXXXXXADGRSKSKAKGPPVQRKPLKHRDYVVDL 61
             + N   GVDNTFR+KFD               +D RSKS++KGPPVQR PLKHRDY VDL
Sbjct:     3 SSNTTTGVDNTFRKKFDVEEFKERAREREKKESD-RSKSRSKGPPVQRAPLKHRDYHVDL 61

Query:    62 ESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERAS 121
             ESRLGKTQVVTP+APLSQQAGY+C VC+CVVKDSANYLDHINGKKHQRALGMSMRVER+S
Sbjct:    62 ESRLGKTQVVTPVAPLSQQAGYFCRVCDCVVKDSANYLDHINGKKHQRALGMSMRVERSS 121

Query:   122 LDQVRERFELLKKRKVPGSFSEQDLD 147
             L+QV+ERFE+LKKRK PG+F+EQDLD
Sbjct:   122 LEQVQERFEVLKKRKAPGTFTEQDLD 147

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-3197 zmat2 "zinc finger, matrin type 2" [Danio rerio (taxid:7955)]

 Score = 369 (135.0 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 76/142 (53%), Positives = 96/142 (67%)

Query:     7 AGVDNTFRRKFDXXXXXXXXXXXXXXXADGRSKSKAKG-PPVQRKPLKHRDYVVDLESRL 65
             +G  N FRRK+D                + R K   K  PP++R+ L+HRDY VDLES+L
Sbjct:     5 SGSKNDFRRKWDKDEYEQLAQKRIT---EEREKKDGKPVPPIKRELLRHRDYKVDLESKL 61

Query:    66 GKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQV 125
             GKT V+T   P ++  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER+SLDQV
Sbjct:    62 GKTIVITKTTPQAEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSSLDQV 121

Query:   126 RERFELLKKRKVPGSFSEQDLD 147
             ++RFE+ KK K+     E D +
Sbjct:   122 KKRFEVNKK-KLEEKQKEYDFE 142

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q5ZIF6 ZMAT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 356 (130.4 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
 Identities = 73/131 (55%), Positives = 91/131 (69%)

Query:     7 AGVDNT-FRRKFDXXXXXXXXXXXXXXXADGRSKSKAK-GPPVQRKPLKHRDYVVDLESR 64
             +G  N  FRRK+D                + R K   K   PV+R+ L+HRDY VDLES+
Sbjct:     5 SGTKNLDFRRKWDKDEYEKLAEKRLT---EEREKKDGKPAQPVKRELLRHRDYKVDLESK 61

Query:    65 LGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQ 124
             LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++LDQ
Sbjct:    62 LGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQ 121

Query:   125 VRERFELLKKR 135
             V++RFE+ KK+
Sbjct:   122 VKKRFEVNKKK 132

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NDH4 ZMAT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 355 (130.0 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 73/130 (56%), Positives = 90/130 (69%)

Query:     8 GVDNT-FRRKFDXXXXXXXXXXXXXXXADGRSKSKAK-GPPVQRKPLKHRDYVVDLESRL 65
             G  N  FRRK+D                + R K   K   PV+R+ L+HRDY VDLES+L
Sbjct:     6 GTKNLDFRRKWDKDEYEKLAEKRLT---EEREKKDGKPAQPVKRELLRHRDYKVDLESKL 62

Query:    66 GKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQV 125
             GKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++LDQV
Sbjct:    63 GKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQV 122

Query:   126 RERFELLKKR 135
             ++RFE+ KK+
Sbjct:   123 KKRFEVNKKK 132

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q0P584 ZMAT2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 354 (129.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 73/131 (55%), Positives = 91/131 (69%)

Query:     7 AGVDNT-FRRKFDXXXXXXXXXXXXXXXADGRSKSKAKG-PPVQRKPLKHRDYVVDLESR 64
             +G  N  FRRK+D                + R K   K   PV+R+ L+HRDY VDLES+
Sbjct:     5 SGTKNLDFRRKWDKDEYEKLAEKRLT---EEREKKDGKPVQPVKRELLRHRDYKVDLESK 61

Query:    65 LGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQ 124
             LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++LDQ
Sbjct:    62 LGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQ 121

Query:   125 VRERFELLKKR 135
             V++RFE+ KK+
Sbjct:   122 VKKRFEVNKKK 132

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2QZ35 ZMAT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 354 (129.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 73/131 (55%), Positives = 91/131 (69%)

Query:     7 AGVDNT-FRRKFDXXXXXXXXXXXXXXXADGRSKSKAKG-PPVQRKPLKHRDYVVDLESR 64
             +G  N  FRRK+D                + R K   K   PV+R+ L+HRDY VDLES+
Sbjct:     5 SGTKNLDFRRKWDKDEYEKLAEKRLT---EEREKKDGKPVQPVKRELLRHRDYKVDLESK 61

Query:    65 LGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQ 124
             LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++LDQ
Sbjct:    62 LGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQ 121

Query:   125 VRERFELLKKR 135
             V++RFE+ KK+
Sbjct:   122 VKKRFEVNKKK 132

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q96NC0 ZMAT2 "Zinc finger matrin-type protein 2" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 73/131 (55%), Positives = 91/131 (69%)

Query:     7 AGVDNT-FRRKFDXXXXXXXXXXXXXXXADGRSKSKAKG-PPVQRKPLKHRDYVVDLESR 64
             +G  N  FRRK+D                + R K   K   PV+R+ L+HRDY VDLES+
Sbjct:     5 SGTKNLDFRRKWDKDEYEKLAEKRLT---EEREKKDGKPVQPVKRELLRHRDYKVDLESK 61

Query:    65 LGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQ 124
             LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++LDQ
Sbjct:    62 LGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQ 121

Query:   125 VRERFELLKKR 135
             V++RFE+ KK+
Sbjct:   122 VKKRFEVNKKK 132

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|I3LF90 ZMAT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 354 (129.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 73/131 (55%), Positives = 91/131 (69%)

Query:     7 AGVDNT-FRRKFDXXXXXXXXXXXXXXXADGRSKSKAKG-PPVQRKPLKHRDYVVDLESR 64
             +G  N  FRRK+D                + R K   K   PV+R+ L+HRDY VDLES+
Sbjct:     5 SGAKNLDFRRKWDKDEYEKLAEKRLT---EEREKKDGKPVQPVKRELLRHRDYKVDLESK 61

Query:    65 LGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQ 124
             LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++LDQ
Sbjct:    62 LGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQ 121

Query:   125 VRERFELLKKR 135
             V++RFE+ KK+
Sbjct:   122 VKKRFEVNKKK 132

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1913742 Zmat2 "zinc finger, matrin type 2" [Mus musculus (taxid:10090)]

 Score = 354 (129.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 73/131 (55%), Positives = 91/131 (69%)

Query:     7 AGVDNT-FRRKFDXXXXXXXXXXXXXXXADGRSKSKAKG-PPVQRKPLKHRDYVVDLESR 64
             +G  N  FRRK+D                + R K   K   PV+R+ L+HRDY VDLES+
Sbjct:     5 SGTKNLDFRRKWDKDEYEKLAEKRLT---EEREKKDGKPVQPVKRELLRHRDYKVDLESK 61

Query:    65 LGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQ 124
             LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++LDQ
Sbjct:    62 LGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQ 121

Query:   125 VRERFELLKKR 135
             V++RFE+ KK+
Sbjct:   122 VKKRFEVNKKK 132

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1583592 Zmat2 "zinc finger, matrin type 2" [Rattus norvegicus (taxid:10116)]

 Score = 354 (129.7 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 73/131 (55%), Positives = 91/131 (69%)

Query:     7 AGVDNT-FRRKFDXXXXXXXXXXXXXXXADGRSKSKAKG-PPVQRKPLKHRDYVVDLESR 64
             +G  N  FRRK+D                + R K   K   PV+R+ L+HRDY VDLES+
Sbjct:     5 SGTKNLDFRRKWDKDEYEKLAEKRLT---EEREKKDGKPVQPVKRELLRHRDYKVDLESK 61

Query:    65 LGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQ 124
             LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++LDQ
Sbjct:    62 LGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQ 121

Query:   125 VRERFELLKKR 135
             V++RFE+ KK+
Sbjct:   122 VKKRFEVNKKK 132

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96NC0	ZMAT2_HUMAN	No assigned EC number	0.51	0.9356	0.9497	yes	no
Q9CPW7	ZMAT2_MOUSE	No assigned EC number	0.51	0.9356	0.9497	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIII0652 hypothetical protein (198 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	6e-08
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	1e-05
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	1e-04

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 46.9 bits (112), Expect = 6e-08
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 82  GYYCSVCECVVKDSANYLDHINGKKHQRAL 111
           G+YC +C     D  +   H+ GKKH++ +
Sbjct: 3   GFYCKLCNVTFTDEISVEAHLKGKKHKKNV 32

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 83  YYCSVCECVVKDSANYLDHINGKKH 107
           +YC +C       +    H+ GKKH
Sbjct: 1   FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 83  YYCSVCECVVKDSANYLDHINGKKHQ 108
           +YC  C+   K      +H+  KKH+
Sbjct: 2   FYCVACDKYFKSENALENHLKSKKHK 27

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG4727	193	consensus U1-like Zn-finger protein [General funct	100.0
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.78
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.71
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.44
PF08648	180	DUF1777: Protein of unknown function (DUF1777); In	98.01
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.81
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	97.26
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	97.18
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	96.86
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.24
KOG2837	309	consensus Protein containing a U1-type Zn-finger a	95.98
KOG3263	196	consensus Nucleic acid binding protein [General fu	95.98
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	95.85
KOG2384	223	consensus Major histocompatibility complex protein	95.68
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	95.55
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	95.25
PLN02748	468	tRNA dimethylallyltransferase	94.8
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	94.61
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.46
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	94.38
PHA02768	55	hypothetical protein; Provisional	94.32
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	93.8
COG4049	65	Uncharacterized protein containing archaeal-type C	93.37
smart00355	26	ZnF_C2H2 zinc finger.	93.23
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	93.1
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	91.09
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	90.92
KOG3032	264	consensus Uncharacterized conserved protein [Funct	89.58
PF11931	196	DUF3449: Domain of unknown function (DUF3449); Int	89.22
PF14968	336	CCDC84: Coiled coil protein 84	87.05
PTZ00448	373	hypothetical protein; Provisional	86.37
KOG0796	319	consensus Spliceosome subunit [RNA processing and	85.28
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	85.15
PHA00616	44	hypothetical protein	84.88

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=100.00  E-value=9.6e-64  Score=411.29  Aligned_cols=191  Identities=59%  Similarity=0.880  Sum_probs=168.8

Q ss_pred             CCCCCCccccccCHHHHHHHHHhHHHHhhhcccccccCCCCCCCCCCcccccccchhhhcCCceEecCCCCCCCCCcccc
Q 028899            6 PAGVDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVDLESRLGKTQVVTPIAPLSQQAGYYC   85 (202)
Q Consensus         6 ~~~~d~~~RRtWDreeYa~kA~~r~~~~~e~~~~~~~~~~~~~~~~Lk~R~~~ldL~~~lgK~~vv~~~~~~~~~~GfyC   85 (202)
                      ..++.++||||||++||+..|++|....-.    .+...+|+++++|++|+|.+||++.||+++||+..+|.+++|||||
T Consensus         3 ~~t~g~~~RRkwD~eEy~e~Ar~r~~d~~~----~~k~~~~vqre~L~~rdykvdl~sKLgkt~vitk~tp~sq~~GyyC   78 (193)
T KOG4727|consen    3 SGTTGNDFRRKWDKEEYEELARERLLDRIV----LKKDGPPVQREHLKHRDYKVDLESKLGKTVVITKSTPRSQKGGYYC   78 (193)
T ss_pred             CCCCCcchhhccCHHHHHHHHHHhhhhhhH----HhhcCCchhHHHHhhhhhhhHhHhhccceeEeccCCcccccCceee
Confidence            345568899999999999999999876421    2235788999999999999999999999999999999999999999


Q ss_pred             cCCCCccccchhhhhhhcCHHHHHHcCCCceeeeccHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Q 028899           86 SVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRR  165 (202)
Q Consensus        86 ~vCd~~~kDs~~~ldH~n~k~H~~~~G~sm~VersTle~Vk~rl~~lk~kk~~~~~~~~~~~eRl~~~~eeEe~~r~~rk  165 (202)
                      +||||+|+||++|||||||+.|++++||||+|+|+||+||+.||+.++.+..+ ....++|++||.+.+++|++.+..++
T Consensus        79 dVCdcvvKDSinflDHiNgKkHqrnlgmsm~verst~~qv~erf~~~k~k~~~-~~ke~~vE~r~~e~qeee~rlkd~~k  157 (193)
T KOG4727|consen   79 DVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKERFEQNKKKMEE-KQKEYDVEERLRETQEEEERLKDTRK  157 (193)
T ss_pred             eecceeehhhHHHHHHhccHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999995543 34688999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCCHHHHHhcCCCCCCCCCC
Q 028899          166 EKKKEKKKEKAAVEEETEMDPDIAAMMGFGSFHSSKK  202 (202)
Q Consensus       166 ekkk~kk~~~~~~e~~~~~d~emaamMGF~gFGssKK  202 (202)
                      ++++++|+...+. .+.+.+|+|+|||||||||+|||
T Consensus       158 EK~ke~K~~t~~d-i~~es~~~~~amMGFSgF~tsKk  193 (193)
T KOG4727|consen  158 EKKKEKKRATKED-IDFESKDEMAAMMGFSGFGTSKK  193 (193)
T ss_pred             HHHHHHhhccccc-ccccccHHHHHHhCccccccCCC
Confidence            9997766664322 23345699999999999999997

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.78  E-value=2.9e-09  Score=65.56  Aligned_cols=32  Identities=31%  Similarity=0.833  Sum_probs=29.8

Q ss_pred             CcccccCCCCccccchhhhhhhcCHHHHHHcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHINGKKHQRALG  112 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~G  112 (202)
                      ++|||++|+.+|.++.+|..|++|++|..++.
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~   33 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVK   33 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHH
Confidence            68999999999999999999999999998764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.71  E-value=7.2e-09  Score=61.21  Aligned_cols=26  Identities=27%  Similarity=0.756  Sum_probs=25.3

Q ss_pred             ccccCCCCccccchhhhhhhcCHHHH
Q 028899           83 YYCSVCECVVKDSANYLDHINGKKHQ  108 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~k~H~  108 (202)
                      |||++||+.|.+..+|..|++|+.|+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            89999999999999999999999995

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.44  E-value=7.8e-08  Score=55.24  Aligned_cols=25  Identities=28%  Similarity=0.783  Sum_probs=24.5

Q ss_pred             ccccCCCCccccchhhhhhhcCHHH
Q 028899           83 YYCSVCECVVKDSANYLDHINGKKH  107 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~k~H  107 (202)
                      |||++|+.+|.+..+|..|++|+.|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            8999999999999999999999998

>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function

Probab=98.01  E-value=1.9e-06  Score=71.35  Aligned_cols=16  Identities=44%  Similarity=0.929  Sum_probs=14.8

Q ss_pred             HHHHHhcCCCCCCCCC
Q 028899          186 PDIAAMMGFGSFHSSK  201 (202)
Q Consensus       186 ~emaamMGF~gFGssK  201 (202)
                      .+||+||||+||||||
T Consensus       127 ~~mmk~MGf~gF~TTK  142 (180)
T PF08648_consen  127 EEMMKMMGFGGFGTTK  142 (180)
T ss_pred             HHHHHhhcccccccCC
Confidence            4799999999999997

Some of the proteins are putative nucleic acid binding proteins.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.81  E-value=1e-05  Score=51.98  Aligned_cols=31  Identities=32%  Similarity=0.621  Sum_probs=17.9

Q ss_pred             CcccccCCCCcc-ccch-hhhhhhcCHHHHHHc
Q 028899           81 AGYYCSVCECVV-KDSA-NYLDHINGKKHQRAL  111 (202)
Q Consensus        81 ~GfyC~vCd~~~-kDs~-~~ldH~n~k~H~~~~  111 (202)
                      +-|||++|++.| .|+. ....|.+|.+|+.+.
T Consensus         2 ~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv   34 (38)
T PF06220_consen    2 PRYYCDYCKKYLTHDSPSIRKQHERGWKHKENV   34 (38)
T ss_dssp             -S-B-TTT--B-S--SHHHHHHHT--THHHHHH
T ss_pred             cCeecccccceecCCChHHHHHhhccHHHHHHH
Confidence            569999999999 7884 669999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=9.9e-05  Score=69.95  Aligned_cols=29  Identities=34%  Similarity=0.609  Sum_probs=27.5

Q ss_pred             cccccCCCCccccchhhhhhhcCHHHHHH
Q 028899           82 GYYCSVCECVVKDSANYLDHINGKKHQRA  110 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~k~H~~~  110 (202)
                      -+||.||+.+|+.-.++.+|+||++|..+
T Consensus       292 ~lyC~vCnKsFKseKq~kNHEnSKKHken  320 (508)
T KOG0717|consen  292 VLYCVVCNKSFKSEKQLKNHENSKKHKEN  320 (508)
T ss_pred             ceEEeeccccccchHHHHhhHHHHHHHHH
Confidence            39999999999999999999999999876

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=97.18  E-value=0.00017  Score=57.46  Aligned_cols=34  Identities=24%  Similarity=0.485  Sum_probs=31.1

Q ss_pred             CCCCcccccCCCCccccchhhhhhhcCHHHHHHc
Q 028899           78 SQQAGYYCSVCECVVKDSANYLDHINGKKHQRAL  111 (202)
Q Consensus        78 ~~~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~  111 (202)
                      .+.|-|||=.|.+.|.|+..+.-|..++.|.+++
T Consensus        53 PG~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRv   86 (129)
T KOG3408|consen   53 PGGGQFYCIECARYFIDAKALKTHFKTKVHKRRV   86 (129)
T ss_pred             CCCceeehhhhhhhhcchHHHHHHHhccHHHHHH
Confidence            3778899999999999999999999999998754

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=96.86  E-value=0.00042  Score=57.62  Aligned_cols=31  Identities=32%  Similarity=0.731  Sum_probs=26.8

Q ss_pred             CcccccCCC-Cccccch-hhhhhhcCHHHHHHc
Q 028899           81 AGYYCSVCE-CVVKDSA-NYLDHINGKKHQRAL  111 (202)
Q Consensus        81 ~GfyC~vCd-~~~kDs~-~~ldH~n~k~H~~~~  111 (202)
                      .-|||++|| ..+.||+ .-.-|++|++|+.+.
T Consensus         2 pRYyCDYCdt~LthDslsvRK~H~~GrkH~~nv   34 (165)
T KOG3454|consen    2 PRYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNV   34 (165)
T ss_pred             CcchhhhhhhhhhcccHHHHHhhhhhHHHHHHH
Confidence            469999999 8899998 567999999998763

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.24  E-value=0.0014  Score=36.50  Aligned_cols=22  Identities=23%  Similarity=0.587  Sum_probs=20.4

Q ss_pred             ccccCCCCccccchhhhhhhcC
Q 028899           83 YYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      |-|++|+..|.+..+|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6799999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]

Probab=95.98  E-value=0.0013  Score=58.85  Aligned_cols=34  Identities=29%  Similarity=0.602  Sum_probs=30.7

Q ss_pred             CCCcccccCCCCccccchhhhhhhcCHHHHHHcC
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHINGKKHQRALG  112 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~G  112 (202)
                      +..-|||..|.+.|+|-+.|..|+-|..|+|.+-
T Consensus        22 QKlRwyCqmCQkQcrDeNGFkCH~~SeSHqRql~   55 (309)
T KOG2837|consen   22 QKLRWYCQMCQKQCRDENGFKCHTMSESHQRQLL   55 (309)
T ss_pred             HHHHHHHHHHHHHhccccccccccCCHHHHHHHH
Confidence            3468999999999999999999999999998654

>KOG3263 consensus Nucleic acid binding protein [General function prediction only]

Probab=95.98  E-value=0.0034  Score=52.90  Aligned_cols=16  Identities=31%  Similarity=0.756  Sum_probs=14.9

Q ss_pred             HHHHHhcCCCCCCCCC
Q 028899          186 PDIAAMMGFGSFHSSK  201 (202)
Q Consensus       186 ~emaamMGF~gFGssK  201 (202)
                      .||++||||+||-|||
T Consensus       144 iEMmk~MGf~gFDtTk  159 (196)
T KOG3263|consen  144 IEMMKIMGFSGFDTTK  159 (196)
T ss_pred             HHHHHHhCcCcccCCC
Confidence            5899999999999987

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.85  E-value=0.0068  Score=41.07  Aligned_cols=42  Identities=24%  Similarity=0.474  Sum_probs=30.8

Q ss_pred             ccccCCCCccccchhhhhhhcCHHHHHHcCCCceeeeccHHHHHHHH
Q 028899           83 YYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERF  129 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~k~H~~~~G~sm~VersTle~Vk~rl  129 (202)
                      -||+.|-..|.|   |..||.|++|+.-..-+.+..  .||.+-.+|
T Consensus         6 GYCE~C~~ky~~---l~~Hi~s~~Hr~FA~~~~Nf~--~lD~li~~l   47 (49)
T PF07535_consen    6 GYCENCRVKYDD---LEEHIQSEKHRKFAENDSNFK--ELDSLISQL   47 (49)
T ss_pred             ccCccccchhhh---HHHHhCCHHHHHHHcCcccHH--HHHHHHHHh
Confidence            499999999986   999999999998665555432  255554443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=95.68  E-value=0.0045  Score=53.32  Aligned_cols=30  Identities=27%  Similarity=0.616  Sum_probs=24.4

Q ss_pred             CCCcccccCCCCccccchhhhhhhcCHHHHH
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHINGKKHQR  109 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~  109 (202)
                      .-.+|||++||..|.+|. +..|+.|--|+-
T Consensus        81 ~e~lfyCE~Cd~~ip~~~-~snH~tSttHll  110 (223)
T KOG2384|consen   81 DEALFYCEVCDIYIPNSK-KSNHFTSTTHLL  110 (223)
T ss_pred             CCccchhhhhhhhccCCC-CccchhhHHHHh
Confidence            668999999999999863 567888888863

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=95.55  E-value=0.0047  Score=48.48  Aligned_cols=34  Identities=24%  Similarity=0.443  Sum_probs=31.0

Q ss_pred             CCCCcccccCCCCccccchhhhhhhcCHHHHHHc
Q 028899           78 SQQAGYYCSVCECVVKDSANYLDHINGKKHQRAL  111 (202)
Q Consensus        78 ~~~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~  111 (202)
                      .+.+.|||=.|++.|-.+..++.|..|+-|.|++
T Consensus        51 PGlGqhYCieCaryf~t~~aL~~HkkgkvHkRR~   84 (126)
T COG5112          51 PGLGQHYCIECARYFITEKALMEHKKGKVHKRRA   84 (126)
T ss_pred             CCCceeeeehhHHHHHHHHHHHHHhccchhHHHH
Confidence            3677899999999999999999999999998764

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=95.25  E-value=0.0079  Score=34.66  Aligned_cols=22  Identities=14%  Similarity=0.379  Sum_probs=20.2

Q ss_pred             ccccCCCCccccchhhhhhhcC
Q 028899           83 YYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      |.|.+|+..|.+..+|..|+..
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCccCCccCChhHHHHHhHH
Confidence            7899999999999999999853

>PLN02748 tRNA dimethylallyltransferase

Probab=94.80  E-value=0.016  Score=55.46  Aligned_cols=32  Identities=22%  Similarity=0.642  Sum_probs=28.9

Q ss_pred             CcccccCCCC-ccccchhhhhhhcCHHHHHHcC
Q 028899           81 AGYYCSVCEC-VVKDSANYLDHINGKKHQRALG  112 (202)
Q Consensus        81 ~GfyC~vCd~-~~kDs~~~ldH~n~k~H~~~~G  112 (202)
                      --|+|++|+. ++.--.+|.-|++|+.|.+++.
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~  449 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQ  449 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHh
Confidence            5689999997 9999999999999999998754

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=94.61  E-value=0.015  Score=31.72  Aligned_cols=21  Identities=14%  Similarity=0.607  Sum_probs=17.6

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|.+...|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            789999999999999999975

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.46  E-value=0.011  Score=42.76  Aligned_cols=30  Identities=17%  Similarity=0.530  Sum_probs=26.0

Q ss_pred             cccccCCCCccccchhhhhhhcCHHHHHHc
Q 028899           82 GYYCSVCECVVKDSANYLDHINGKKHQRAL  111 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~  111 (202)
                      .|.|.+|+..|.+..++..|+++..|....
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~   79 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRN   79 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCcc
Confidence            699999999999999999999999887643

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=94.38  E-value=0.017  Score=39.19  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=22.3

Q ss_pred             ccccCCCCccccchhhhhhhcCHHHHHHc
Q 028899           83 YYCSVCECVVKDSANYLDHINGKKHQRAL  111 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~k~H~~~~  111 (202)
                      -||+.|-.-|.   .|..||.|++|..-.
T Consensus         6 GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA   31 (49)
T smart00586        6 GYCENCREKYD---DLETHLLSEKHRRFA   31 (49)
T ss_pred             cccccHhHHHh---hHHHHhccHHHHHHH
Confidence            49999999997   488999999998643

>PHA02768 hypothetical protein; Provisional

Probab=94.32  E-value=0.017  Score=40.08  Aligned_cols=26  Identities=23%  Similarity=0.657  Sum_probs=23.7

Q ss_pred             CcccccCCCCccccchhhhhhhcCHHHH
Q 028899           81 AGYYCSVCECVVKDSANYLDHINGKKHQ  108 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~k~H~  108 (202)
                      .||.|+.|+..|..+.+|..|.+.  |.
T Consensus         4 ~~y~C~~CGK~Fs~~~~L~~H~r~--H~   29 (55)
T PHA02768          4 LGYECPICGEIYIKRKSMITHLRK--HN   29 (55)
T ss_pred             cccCcchhCCeeccHHHHHHHHHh--cC
Confidence            599999999999999999999776  66

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=93.80  E-value=0.02  Score=53.21  Aligned_cols=31  Identities=26%  Similarity=0.498  Sum_probs=28.9

Q ss_pred             CCcccccCCCCccccchhhhhhhcCHHHHHH
Q 028899           80 QAGYYCSVCECVVKDSANYLDHINGKKHQRA  110 (202)
Q Consensus        80 ~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~  110 (202)
                      -.+|||++|.+-|.-+.-|.-|+-|+.|.++
T Consensus       236 ~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~  266 (470)
T COG5188         236 FPKVYCVKCGREFSRSKVFEYHLEGKRHCKE  266 (470)
T ss_pred             ccceeeHhhhhHhhhhHHHHHHHhhhhhhhh
Confidence            3689999999999999999999999999875

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.37  E-value=0.023  Score=39.98  Aligned_cols=34  Identities=26%  Similarity=0.550  Sum_probs=27.4

Q ss_pred             CCCcccccCCCCccccchhhhhhhcCHHHHHHcCC
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHINGKKHQRALGM  113 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~G~  113 (202)
                      +.--|-|+-||..|+++-+|..|.| +.|....|-
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVN-KaH~~~~~r   47 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVN-KAHGWLFGR   47 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhh-HHhhhhhcC
Confidence            3345789999999999999999999 667655543

>smart00355 ZnF_C2H2 zinc finger

Probab=93.23  E-value=0.045  Score=29.87  Aligned_cols=21  Identities=29%  Similarity=0.657  Sum_probs=19.5

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|+.|+..|....++..|+.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            679999999999999999986

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=93.10  E-value=0.1  Score=46.09  Aligned_cols=47  Identities=34%  Similarity=0.591  Sum_probs=35.3

Q ss_pred             CCCCcccccCCC--Cccccch-hhhhhhcCHHHHHHcCCCceeeeccHHHHHHHHHHHHHhh
Q 028899           78 SQQAGYYCSVCE--CVVKDSA-NYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKKRK  136 (202)
Q Consensus        78 ~~~~GfyC~vCd--~~~kDs~-~~ldH~n~k~H~~~~G~sm~VersTle~Vk~rl~~lk~kk  136 (202)
                      ..+-.-.|+||+  ++.-|+. .+.||+.||.|+-            --.||..|+.|+++.
T Consensus       186 ~~qkl~VCeVCGA~Ls~~D~d~RladH~~GK~HlG------------y~~IR~~l~el~e~~  235 (254)
T PF03194_consen  186 QQQKLEVCEVCGAFLSVGDNDRRLADHFGGKQHLG------------YAKIREKLKELKEKR  235 (254)
T ss_pred             cccCccchhhhhhHHhccchHHHHHHHhccchhhh------------HHHHHHHHHHHHHHH
Confidence            356678999999  5566886 5789999999974            445677777776653

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=91.09  E-value=0.098  Score=47.74  Aligned_cols=43  Identities=26%  Similarity=0.531  Sum_probs=34.2

Q ss_pred             CCCcccccCCCCccccch-hhhhhhcCHHHHHHcCCCceeeeccHHHHHHHHHHHHHh
Q 028899           79 QQAGYYCSVCECVVKDSA-NYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKKR  135 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~-~~ldH~n~k~H~~~~G~sm~VersTle~Vk~rl~~lk~k  135 (202)
                      .++-+||++|-|-|.|+. +-.-|-.|+.|+-+              |..||..+.++
T Consensus         7 S~~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~--------------V~Kritdi~rk   50 (336)
T KOG0150|consen    7 SQPKKFCDYCKIWIKDNPASVRFHERGKRHKEN--------------VAKRITDIHRK   50 (336)
T ss_pred             hccchhhhhhhhhhcCChHHHHhHhhhhHHHHH--------------HHHHHHHHHHh
Confidence            467899999999999997 67789999999854              56666665554

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=90.92  E-value=0.075  Score=49.62  Aligned_cols=38  Identities=24%  Similarity=0.441  Sum_probs=32.5

Q ss_pred             CCCcccccCCCCccccchhhhhhhcCHHHHHHcCCCce
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMR  116 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~G~sm~  116 (202)
                      ..+-|||.+|.+.|.-..++.+||+|+.|.-++....+
T Consensus        65 ~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r  102 (390)
T KOG2785|consen   65 AESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR  102 (390)
T ss_pred             cccceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence            56788999999999999999999999999876654433

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.58  E-value=0.22  Score=44.03  Aligned_cols=36  Identities=31%  Similarity=0.643  Sum_probs=30.2

Q ss_pred             cCCCCCCCCCcccccCCCCccccchhhhhhhcCHHHH
Q 028899           72 TPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQ  108 (202)
Q Consensus        72 ~~~~~~~~~~GfyC~vCd~~~kDs~~~ldH~n~k~H~  108 (202)
                      +....+...+-..|-||+...+ -.-|.-|+||++|.
T Consensus        25 splakyn~sgql~C~vCn~piK-p~lW~vHvnsKkHr   60 (264)
T KOG3032|consen   25 SPLAKYNESGQLVCRVCNVPIK-PSLWDVHVNSKKHR   60 (264)
T ss_pred             cHhhccCCCCCeeEEEecCccc-HHHHHHHhccHHHH
Confidence            3344456778889999999999 77899999999996

>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised

Probab=89.22  E-value=0.11  Score=44.47  Aligned_cols=36  Identities=25%  Similarity=0.543  Sum_probs=0.0

Q ss_pred             CCcccccCCC-CccccchhhhhhhcCHHHH---HHcCCCc
Q 028899           80 QAGYYCSVCE-CVVKDSANYLDHINGKKHQ---RALGMSM  115 (202)
Q Consensus        80 ~~GfyC~vCd-~~~kDs~~~ldH~n~k~H~---~~~G~sm  115 (202)
                      .--|+|+||+ .+|+-..+|..|++...|.   +.||.+.
T Consensus        99 ~~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcLGI~n  138 (196)
T PF11931_consen   99 GVEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCLGIPN  138 (196)
T ss_dssp             ----------------------------------------
T ss_pred             CCeeeeEeCCCcceecHHHHHHhcChhHHHccChhcCCCC
Confidence            4579999996 6788999999999999995   7788773

It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.

>PF14968 CCDC84: Coiled coil protein 84

Probab=87.05  E-value=0.2  Score=46.12  Aligned_cols=55  Identities=20%  Similarity=0.509  Sum_probs=38.8

Q ss_pred             ccccccchhhhcCCceEecCCCCCCCCCcccccCCCCccccc------hhhhhhhcCHHHHHH
Q 028899           54 HRDYVVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDS------ANYLDHINGKKHQRA  110 (202)
Q Consensus        54 ~R~~~ldL~~~lgK~~vv~~~~~~~~~~GfyC~vCd~~~kDs------~~~ldH~n~k~H~~~  110 (202)
                      .+...-|+-.-|.+.++.....  .....|+|-.||+-+.+.      ...|.||.|+.|+.+
T Consensus        32 f~~Kl~d~R~~lk~p~v~~~~~--~~~~~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~   92 (336)
T PF14968_consen   32 FRSKLSDARFFLKKPSVLRYDP--EHRNRFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKN   92 (336)
T ss_pred             HHHHHHHHHHHHhCCccCCCCc--cccceeEeeCccchhhhccchhhhccHHhhcCCHHHHHH
Confidence            3444444544455555544322  356789999999999998      688999999999853

>PTZ00448 hypothetical protein; Provisional

Probab=86.37  E-value=0.52  Score=44.02  Aligned_cols=31  Identities=16%  Similarity=0.281  Sum_probs=28.4

Q ss_pred             cccccCCCCccccchhhhhhhcCHHHHHHcC
Q 028899           82 GYYCSVCECVVKDSANYLDHINGKKHQRALG  112 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~G  112 (202)
                      -|-|..|+..|.|+..+-+|..|--|..|+-
T Consensus       314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLK  344 (373)
T PTZ00448        314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTK  344 (373)
T ss_pred             CccccccccccCCHHHHHHHhhhhHHHHHHH
Confidence            5889999999999999999999999997764

>KOG0796 consensus Spliceosome subunit [RNA processing and modification]

Probab=85.28  E-value=0.57  Score=42.94  Aligned_cols=47  Identities=36%  Similarity=0.545  Sum_probs=34.3

Q ss_pred             CCCcccccCCCCccc--cch-hhhhhhcCHHHHHHcCCCceeeeccHHHHHHHHHHHHHhhC
Q 028899           79 QQAGYYCSVCECVVK--DSA-NYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKKRKV  137 (202)
Q Consensus        79 ~~~GfyC~vCd~~~k--Ds~-~~ldH~n~k~H~~~~G~sm~VersTle~Vk~rl~~lk~kk~  137 (202)
                      .+..=.|+||+..+.  |+. .+.||++||.|+-            --.|+++|+.|++...
T Consensus       183 ~qkl~VCeVCGa~L~~~D~d~RlaDHf~GKlHlG------------y~~iR~~l~eLk~~~~  232 (319)
T KOG0796|consen  183 QQKLRVCEVCGAFLSVNDADRRLADHFGGKLHLG------------YVLIREKLAELKKEKA  232 (319)
T ss_pred             hhhhhHHHhhhHHHhccchHHHHHHhhcchHHHH------------HHHHHHHHHHHHHHHh
Confidence            455669999997654  554 6779999999974            3456777777776543

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=85.15  E-value=0.37  Score=41.56  Aligned_cols=33  Identities=36%  Similarity=0.736  Sum_probs=29.2

Q ss_pred             CCCcccccCCCCccccchhhhhhhcCHHHHHHc
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHINGKKHQRAL  111 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~  111 (202)
                      -.+-|-|.+|-..--.-.+|+.|.-|++|+-|+
T Consensus        50 h~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nl   82 (222)
T KOG0227|consen   50 HLGKYECKLCLTLHNNEGSYLAHTQGKKHQTNL   82 (222)
T ss_pred             cCcceeehhhhhhhcchhhhhhhhccchhhHHH
Confidence            557899999998888889999999999998755

>PHA00616 hypothetical protein

Probab=84.88  E-value=0.24  Score=32.89  Aligned_cols=22  Identities=18%  Similarity=0.603  Sum_probs=20.3

Q ss_pred             ccccCCCCccccchhhhhhhcC
Q 028899           83 YYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      |-|..|+..|....++..|+++
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~   23 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLS   23 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHH
Confidence            7899999999999999999953

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 115 MRVERASLDQVRERFEL-LKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKK 173
           +  E  S+ + RE     L++     + S+    E   K +++ EE  +++ E+ ++ K 
Sbjct: 80  LTQEPESIRKWREEQRKRLQEL---DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136

Query: 174 EKAAVEEETEMDPD 187
                ++     PD
Sbjct: 137 NNRIADKAFYQQPD 150

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 28/206 (13%), Positives = 51/206 (24%), Gaps = 62/206 (30%)

Query: 12  TFRRK--FDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHRDYVVDLESRLGKTQ 69
           T R K   D               +   +  + K   +  K L  R    DL       +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDCR--PQDL-----PRE 321

Query: 70  VVTPIAPLSQQAGYYCSVCECVVKDSAN---YLDHINGKKHQRALGMSMRVERASLDQVR 126
           V+T   P         S+    ++D         H+N  K    +  S  +      + R
Sbjct: 322 VLT-TNPRR------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYR 372

Query: 127 ERFE---------------------------------------LLKKRKVPGSFSEQDLD 147
           + F+                                       L++K+    + S   + 
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 148 ERIIKQQEEEEERRRQRREKKKEKKK 173
             +  + E E    R   +     K 
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKT 458

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	98.47
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.67
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.54
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.93
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	95.48
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	95.21
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	94.64
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.48
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	94.29
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	94.05
1ard_A	29	Yeast transcription factor ADR1; transcription reg	93.83
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	93.79
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	93.73
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	93.68
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	93.51
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	92.45
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	92.45
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	93.33
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	93.3
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	93.27
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	93.26
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.12
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	93.06
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	92.04
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.81
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	92.53
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.49
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	92.47
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	92.37
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.29
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.22
1paa_A	30	Yeast transcription factor ADR1; transcription reg	92.18
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.17
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.96
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.92
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.86
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	91.65
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.62
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.56
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	91.56
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.51
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	91.44
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	91.25
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.25
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	91.23
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	91.2
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	91.19
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	91.17
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.16
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.15
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	91.12
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	91.06
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.95
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	90.9
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	90.86
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.83
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	90.8
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	90.75
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	90.71
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.69
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	90.56
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.5
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	90.48
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.45
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.44
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	90.44
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	90.42
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.38
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	90.37
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	90.37
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	90.36
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	90.35
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.35
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	90.24
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	90.23
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.23
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	90.18
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	90.18
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.16
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.14
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	90.13
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.11
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	90.08
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	90.07
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	90.05
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.04
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	90.02
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	89.99
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	89.97
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.96
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.94
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.93
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	89.91
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.88
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.76
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	89.7
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.69
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	89.69
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	89.68
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	89.64
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.64
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	89.63
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.62
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	89.6
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	89.56
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	89.53
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.52
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.52
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.49
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	89.48
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.46
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.43
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.38
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.37
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	89.35
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.34
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	89.28
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.26
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.24
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	89.23
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.2
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	89.19
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	89.17
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	89.1
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.05
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	89.02
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.0
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	88.96
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.95
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	88.9
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.87
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.84
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.77
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.68
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	88.68
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	88.68
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	88.68
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.66
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	88.63
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.45
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.33
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	88.21
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.19
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	88.12
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.98
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.97
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.92
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	87.9
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.8
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	87.74
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	87.72
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	87.49
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	87.45
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.42
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	87.29
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	87.26
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	87.24
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	87.09
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.98
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	86.97
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	86.8
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	86.65
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	86.39
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	86.33
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	85.66
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	85.41
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.34
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	85.01
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	84.88
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	84.78
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	84.65
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	84.64
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	84.53
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	84.51
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	84.38
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	84.32
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	84.28
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	84.22
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	84.1
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	84.09
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	83.92
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	83.92
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	83.79
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	83.66
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	83.6
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	83.51
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	82.46
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	82.33
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	82.1
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	81.84
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	81.7
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	81.02
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	80.96
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	80.9
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	80.7
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	80.27

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=98.47  E-value=4.7e-08  Score=70.89  Aligned_cols=31  Identities=29%  Similarity=0.752  Sum_probs=28.4

Q ss_pred             CcccccCCCCcc-ccchh-hhhhhcCHHHHHHc
Q 028899           81 AGYYCSVCECVV-KDSAN-YLDHINGKKHQRAL  111 (202)
Q Consensus        81 ~GfyC~vCd~~~-kDs~~-~ldH~n~k~H~~~~  111 (202)
                      ++|||++||+.| .||.+ +.+|+||.+|+++.
T Consensus         2 PkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv   34 (77)
T 3cw1_L            2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENV   34 (77)
T ss_pred             CCcccccCCceecCCCHHHHHHHHccHHHHHHH
Confidence            589999999999 89887 89999999999764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.67  E-value=1.2e-05  Score=62.95  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=29.4

Q ss_pred             CCCcccccCCCCccccchhhhhhhcCHHHHHH
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHINGKKHQRA  110 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~  110 (202)
                      +..-|||.+|++.|..+.+|..|++++.|.++
T Consensus        47 GekpfyC~~C~K~F~~~~~L~~H~rsK~HKrr   78 (124)
T 1zr9_A           47 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKR   78 (124)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHH
T ss_pred             CCcceEcccCcchhCCHHHHHHHHhhhhhhHH
Confidence            45679999999999999999999999999875

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.54  E-value=2.8e-05  Score=60.21  Aligned_cols=33  Identities=24%  Similarity=0.445  Sum_probs=30.5

Q ss_pred             CCCcccccCCCCccccchhhhhhhcCHHHHHHc
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHINGKKHQRAL  111 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~  111 (202)
                      ....|||.+|+..|.....+..|++|+.|++++
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~  122 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNL  122 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHH
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHH
Confidence            567899999999999999999999999999864

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.93  E-value=0.00025  Score=54.83  Aligned_cols=29  Identities=28%  Similarity=0.582  Sum_probs=27.4

Q ss_pred             ccccCCCCccccchhhhhhhcCHHHHHHc
Q 028899           83 YYCSVCECVVKDSANYLDHINGKKHQRAL  111 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~k~H~~~~  111 (202)
                      |||.+|+.+|....++..|.+|+.|.+++
T Consensus        33 ~~C~~C~v~~~S~s~~~~H~~gkkH~~~v   61 (127)
T 1zu1_A           33 TQCKVCSAVLISESQKLAHYQSRKHANKV   61 (127)
T ss_dssp             SEETTTTEECCSHHHHHHHHHCHHHHHHH
T ss_pred             CcCcCCCCEeCCHHHHHHHHCcHHHHHHH
Confidence            89999999999999999999999998773

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=95.48  E-value=0.0058  Score=56.03  Aligned_cols=33  Identities=30%  Similarity=0.630  Sum_probs=30.4

Q ss_pred             CCCcccccCCCCccccchhhhhhhcCHHHHHHc
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHINGKKHQRAL  111 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~  111 (202)
                      ...|+||..|++.|.-..-|..|++|++|.++.
T Consensus       289 ~~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~  321 (402)
T 4dgw_A          289 EAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNE  321 (402)
T ss_dssp             TTTEECBTTTTBCBSSHHHHHTTSSSHHHHHHH
T ss_pred             CCcCeeehhhhhhhccccccHHHhcccccchhH
Confidence            467999999999999999999999999999864

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=95.21  E-value=0.0078  Score=37.47  Aligned_cols=25  Identities=28%  Similarity=0.582  Sum_probs=21.8

Q ss_pred             CCCCcccccCCCCccccchhhhhhh
Q 028899           78 SQQAGYYCSVCECVVKDSANYLDHI  102 (202)
Q Consensus        78 ~~~~GfyC~vCd~~~kDs~~~ldH~  102 (202)
                      +....|||..||.+|.--.+|+.|-
T Consensus         4 ~~~~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            4 AEVMKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCCCCSEETTTTEECSSHHHHHHHH
T ss_pred             CccCcCeeccccceehhhHHHhhhh
Confidence            4678999999999999888998883

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=94.64  E-value=0.016  Score=39.11  Aligned_cols=31  Identities=23%  Similarity=0.345  Sum_probs=27.2

Q ss_pred             CCcccccCCCCccccchhhhhhhcCHHHHHH
Q 028899           80 QAGYYCSVCECVVKDSANYLDHINGKKHQRA  110 (202)
Q Consensus        80 ~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~  110 (202)
                      ++---|.+||..|.-..++-|||=+++|.-+
T Consensus        11 ~P~~eC~lC~vkYs~r~slqDHIFs~qHI~~   41 (55)
T 2yrk_A           11 GTKPECTLCGVKYSARLSIRDHIFSKQHISK   41 (55)
T ss_dssp             CCCSCCTTTTCCCCSSSCHHHHHTSHHHHHH
T ss_pred             CCCccccccCcccccccchhhhhccHHHHHH
Confidence            3445899999999999999999999999754

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.48  E-value=0.0083  Score=55.03  Aligned_cols=32  Identities=25%  Similarity=0.563  Sum_probs=28.4

Q ss_pred             CcccccCCCC------ccccchhhhhhhcCHHHHHHcC
Q 028899           81 AGYYCSVCEC------VVKDSANYLDHINGKKHQRALG  112 (202)
Q Consensus        81 ~GfyC~vCd~------~~kDs~~~ldH~n~k~H~~~~G  112 (202)
                      .-|+|++|+.      ++.-..+|.-|++|+.|.+++.
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~  396 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLK  396 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHH
Confidence            4689999998      8888899999999999998753

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=94.29  E-value=0.019  Score=30.17  Aligned_cols=21  Identities=24%  Similarity=0.561  Sum_probs=19.3

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|.....|..|+.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            789999999999999999974

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=94.05  E-value=0.015  Score=31.02  Aligned_cols=22  Identities=23%  Similarity=0.603  Sum_probs=19.9

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .|-|++|+..|....+|..|+.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4889999999999999999974

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=93.83  E-value=0.023  Score=30.16  Aligned_cols=21  Identities=19%  Similarity=0.515  Sum_probs=19.4

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|.....+..|+.
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            3 FVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH
T ss_pred             eECCCCCcccCCHHHHHHHHH
Confidence            889999999999999999964

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=93.79  E-value=0.025  Score=30.13  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=20.0

Q ss_pred             ccccCCCCccccchhhhhhhcC
Q 028899           83 YYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      |-|++|+..|.....|..|+..
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            3 FACPECPKRFMRSDHLTLHILL   24 (29)
T ss_dssp             EECSSSSCEESCSHHHHHHHTG
T ss_pred             ccCCCCCchhCCHHHHHHHHHH
Confidence            7899999999999999999753

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=93.73  E-value=0.026  Score=30.02  Aligned_cols=21  Identities=43%  Similarity=0.763  Sum_probs=19.3

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|.....|..|+.
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            3 YQCQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHH
T ss_pred             ccCCCCCCccCCHHHHHHHHH
Confidence            789999999999999999964

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=93.68  E-value=0.02  Score=30.33  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.6

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|..+..|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            3789999999999999999964

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=93.51  E-value=0.029  Score=31.94  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=20.3

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCCCCCcccCcHHHHHHHHH
Confidence            35999999999999999999964

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=92.45  E-value=0.015  Score=31.27  Aligned_cols=21  Identities=14%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|....+|..|+.
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            3 CQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            789999999999999999974

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=92.45  E-value=0.015  Score=30.63  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=19.3

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|..+..|..|+.
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            3 YVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            789999999999999999965

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=93.33  E-value=0.024  Score=29.98  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.8

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            4789999999999999999974

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=93.30  E-value=0.03  Score=29.70  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|....++..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            3789999999999999999965

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=93.27  E-value=0.033  Score=29.31  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|.....|..|+.
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            3 HKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCSSCCCCCCTTTHHHHHHH
T ss_pred             CcCCCCCcccCCHHHHHHHHH
Confidence            789999999999999999974

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=93.26  E-value=0.028  Score=44.57  Aligned_cols=39  Identities=21%  Similarity=0.419  Sum_probs=28.1

Q ss_pred             cccCCCCccccchhhhhhhcCHHHHHHcCCCceeeeccHHHHHHH
Q 028899           84 YCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRER  128 (202)
Q Consensus        84 yC~vCd~~~kDs~~~ldH~n~k~H~~~~G~sm~VersTle~Vk~r  128 (202)
                      ||++|-..|.|   |..||.|.+|..-. .+.+-  .-||.+-++
T Consensus        89 yCE~C~~~y~~---l~~H~~s~~Hr~fa-~~~n~--~~lD~li~~  127 (144)
T 4f9c_B           89 YCECCLQKYED---LETHLLSEQHRNFA-QSNQY--QVVDDIVSK  127 (144)
T ss_dssp             EETTTTEECSC---HHHHHHSHHHHHHH-TSSTT--HHHHHHHTT
T ss_pred             Cccchhhhhhh---HHHHcCCHHHHHHH-hcccH--HHHHHHHHH
Confidence            99999999997   77999999998655 44332  225544433

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=93.12  E-value=0.03  Score=31.26  Aligned_cols=22  Identities=32%  Similarity=0.623  Sum_probs=20.0

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|..+.+|..|+.
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            7 GYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCcchhCCHHHHHHHHH
Confidence            5999999999999999999964

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=93.06  E-value=0.027  Score=30.05  Aligned_cols=22  Identities=23%  Similarity=0.531  Sum_probs=19.7

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|..+..+..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            3889999999999999999974

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=92.04  E-value=0.019  Score=30.78  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=19.8

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|....+|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            3789999999999999999975

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.81  E-value=0.038  Score=31.27  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|.....|..|+..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            358999999999999999999753

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=92.53  E-value=0.042  Score=30.79  Aligned_cols=22  Identities=23%  Similarity=0.603  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus         7 ~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            7 PFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CEECSSSCCEESSHHHHHHHHG
T ss_pred             CeeCCCCCcccCCHHHHHHHHH
Confidence            4899999999999999999975

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.49  E-value=0.038  Score=31.29  Aligned_cols=23  Identities=30%  Similarity=0.715  Sum_probs=20.4

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHH
Confidence            35999999999999999999964

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=92.47  E-value=0.035  Score=34.29  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus         7 p~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            7 PYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CEECCCcCcccCCHHHHHHHhh
Confidence            5899999999999999999975

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=92.37  E-value=0.045  Score=30.85  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|..+.+|..|+.
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            3 FACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHH
T ss_pred             ccCCCCCchhCCHHHHHHHHH
Confidence            789999999999999999974

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.29  E-value=0.068  Score=30.16  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHH
Confidence            45899999999999999999974

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.22  E-value=0.053  Score=30.44  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHHH
Confidence            35899999999999999999963

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=92.18  E-value=0.067  Score=28.53  Aligned_cols=20  Identities=20%  Similarity=0.562  Sum_probs=18.5

Q ss_pred             ccccCCCCccccchhhhhhh
Q 028899           83 YYCSVCECVVKDSANYLDHI  102 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~  102 (202)
                      |-|++|+..|.....|..|+
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            3 YACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             SBCTTTCCBCSSSHHHHHHH
T ss_pred             cCCcccCcccCChHHHHHHH
Confidence            78999999999999999993

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.17  E-value=0.055  Score=30.75  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=19.9

Q ss_pred             cccccCCCCccccc-hhhhhhhc
Q 028899           82 GYYCSVCECVVKDS-ANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs-~~~ldH~n  103 (202)
                      -|-|++|+..|... ..|..|+.
T Consensus         9 ~~~C~~C~k~f~~~~~~L~~H~~   31 (37)
T 2elp_A            9 AMKCPYCDFYFMKNGSDLQRHIW   31 (37)
T ss_dssp             CEECSSSSCEECSSCHHHHHHHH
T ss_pred             CeECCCCChhhccCHHHHHHHHH
Confidence            59999999999999 89999974

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.96  E-value=0.04  Score=31.29  Aligned_cols=22  Identities=32%  Similarity=0.625  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|....+|..|+.
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            9 SYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHH
T ss_pred             CcCCCCCCCccCCHHHHHHHHH
Confidence            4899999999999999999975

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.92  E-value=0.053  Score=30.44  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=20.5

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999974

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.86  E-value=0.046  Score=31.44  Aligned_cols=20  Identities=30%  Similarity=0.539  Sum_probs=18.7

Q ss_pred             cccccCCCCccccchhhhhh
Q 028899           82 GYYCSVCECVVKDSANYLDH  101 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH  101 (202)
                      -|-|++|+..|.....|..|
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H   28 (37)
T 2elm_A            9 LYYCSQCHYSSITKNCLKRH   28 (37)
T ss_dssp             EEECSSSSCEEECHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHH
Confidence            48999999999999999988

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.65  E-value=0.067  Score=32.08  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|..+.+|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoy_A           12 CFKCNKCEKTFSCSKYLTQHER   33 (46)
T ss_dssp             CEECSSSCCEESSSHHHHHHHT
T ss_pred             CEECcCCCCcCCCHHHHHHHHH
Confidence            5899999999999999999975

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.62  E-value=0.082  Score=31.67  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQR   33 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGG
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            35999999999999999999975

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.56  E-value=0.073  Score=31.82  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.8

Q ss_pred             cccccCCCCccccchhhhhhhcC
Q 028899           82 GYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      -|-|++|+..|.....|..|+..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emg_A           12 PFICSECGKVFTHKTNLIIHQKI   34 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CEECCccCcccCCHHHHHHHHHH
Confidence            58999999999999999999753

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.56  E-value=0.072  Score=32.02  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=21.2

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|.....|..|+..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHSV   34 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHHh
Confidence            358999999999999999999753

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.51  E-value=0.073  Score=31.83  Aligned_cols=22  Identities=18%  Similarity=0.462  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq2_A           12 PYQCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             SSSCCSSCCCCSSHHHHHHHGG
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999975

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.44  E-value=0.081  Score=30.97  Aligned_cols=23  Identities=17%  Similarity=0.502  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            35899999999999999999975

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.25  E-value=0.078  Score=31.20  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           12 PYVCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             SSCCTTTCCCCSSHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHhh
Confidence            5899999999999999999975

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.25  E-value=0.069  Score=31.93  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=21.1

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|.....|..|+..
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQRI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHhH
Confidence            359999999999999999999753

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=91.23  E-value=0.038  Score=30.87  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=19.6

Q ss_pred             ccccCCCCccccchhhhhhhcC
Q 028899           83 YYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      |-|++|+..|..+.++..|+..
T Consensus         3 ~~C~~C~k~f~~~~~L~~H~~~   24 (32)
T 2kfq_A            3 FACPACPKRFMRSDALSKHIKT   24 (32)
T ss_dssp             SSSSSSCTTHHHHHTTSSSTTS
T ss_pred             CCCCCCCcccCCHHHHHHHHHH
Confidence            7899999999999999999753

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.20  E-value=0.086  Score=30.68  Aligned_cols=23  Identities=22%  Similarity=0.512  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -.|-|++|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHH
Confidence            35899999999999999999975

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.19  E-value=0.072  Score=31.86  Aligned_cols=25  Identities=20%  Similarity=0.495  Sum_probs=21.6

Q ss_pred             cccccCCCCccccchhhhhhhcCHHHH
Q 028899           82 GYYCSVCECVVKDSANYLDHINGKKHQ  108 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~k~H~  108 (202)
                      -|-|++|+..|.....|..|+.  .|.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~--~H~   36 (46)
T 2en3_A           12 PFQCKECGMNFSWSCSLFKHLR--SHE   36 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHH--HHH
T ss_pred             CeeCcccChhhCCHHHHHHHHH--HhC
Confidence            4999999999999999999974  454

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.17  E-value=0.071  Score=31.73  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeECCCCCcccCchHHHHHHHh
Confidence            35999999999999999999975

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.16  E-value=0.08  Score=31.55  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.8

Q ss_pred             cccccCCCCccccchhhhhhhcC
Q 028899           82 GYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      -|-|++|+..|.....|..|+..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep1_A           12 PYECSDCGKSFIKKSQLHVHQRI   34 (46)
T ss_dssp             SSCCSSSCCCCSSHHHHHHHHGG
T ss_pred             CcCCCCCCchhCCHHHHHHHHHH
Confidence            48999999999999999999763

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.15  E-value=0.063  Score=32.11  Aligned_cols=22  Identities=27%  Similarity=0.560  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em3_A           12 PYECKVCSKAFTQKAHLAQHQK   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            4999999999999999999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=91.12  E-value=0.066  Score=30.95  Aligned_cols=22  Identities=27%  Similarity=0.616  Sum_probs=20.0

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus         6 ~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            6 SYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH
T ss_pred             ceECCCCCcccCCHHHHHHHHH
Confidence            4899999999999999999975

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.06  E-value=0.082  Score=30.77  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=20.0

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|..+..|..|+.
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2yte_A           10 PYSCAECKETFSDNNRLVQHQK   31 (42)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            4899999999999999999964

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.95  E-value=0.076  Score=31.92  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRR   33 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCCeeCChHHHHHHHH
Confidence            35999999999999999999974

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.90  E-value=0.081  Score=31.31  Aligned_cols=22  Identities=23%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2yu5_A           12 PFKCSKCDRVFTQRNYLVQHER   33 (44)
T ss_dssp             SEECSSSSCEESSSHHHHHHHH
T ss_pred             CeECCCCCchhCCHHHHHHHhH
Confidence            4999999999999999999964

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.86  E-value=0.084  Score=30.73  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHH
Confidence            35899999999999999999975

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.83  E-value=0.098  Score=31.22  Aligned_cols=23  Identities=22%  Similarity=0.512  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRG   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            35899999999999999999975

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.80  E-value=0.078  Score=31.48  Aligned_cols=23  Identities=17%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQA   33 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            35899999999999999999964

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=90.75  E-value=0.083  Score=30.84  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A           10 PYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            4899999999999999999975

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=90.71  E-value=0.075  Score=30.96  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .-|-|++|+..|....+|..|+.
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~   32 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQR   32 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHhh
Confidence            35999999999999999999964

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.69  E-value=0.098  Score=31.32  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQR   33 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999975

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.56  E-value=0.089  Score=31.12  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2emb_A           12 RYECSKCQATFNLRKHLIQHQK   33 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHGG
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            4999999999999999999975

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.50  E-value=0.098  Score=31.22  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCChhHHHHHhH
Confidence            35899999999999999999975

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.48  E-value=0.08  Score=31.24  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             cccccCCCCccccchhhhhhhcC
Q 028899           82 GYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      -|-|++|+..|.....|..|+..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eoj_A           12 PYECCECGKVFSRKDQLVSHQKT   34 (44)
T ss_dssp             SCEETTTTEECSSHHHHHHHHTT
T ss_pred             CeeCCCCCCccCCHHHHHHHHHH
Confidence            58999999999999999999753

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.45  E-value=0.11  Score=31.02  Aligned_cols=22  Identities=14%  Similarity=0.377  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yth_A           12 PFQCEECGKRFTQNSHLHSHQR   33 (46)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHGG
T ss_pred             CCCCCCCCcccCCHHHHHHHHH
Confidence            4899999999999999999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.44  E-value=0.09  Score=31.49  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoh_A           12 PYECKECRKTFIQIGHLNQHKR   33 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CcCCCCcCchhCCHHHHHHHHH
Confidence            4899999999999999999964

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.44  E-value=0.095  Score=31.21  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            35999999999999999999975

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.42  E-value=0.11  Score=31.00  Aligned_cols=23  Identities=17%  Similarity=0.395  Sum_probs=20.8

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCEECCccCchhCChHHHHHHhH
Confidence            35999999999999999999975

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.38  E-value=0.094  Score=31.41  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQR   33 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            35899999999999999999975

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.37  E-value=0.086  Score=30.99  Aligned_cols=22  Identities=23%  Similarity=0.526  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eof_A           12 PYECNECQKAFNTKSNLMVHQR   33 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHHH
T ss_pred             CeECCCCCcccCCHhHHHHHHH
Confidence            5999999999999999999974

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=90.37  E-value=0.076  Score=32.11  Aligned_cols=22  Identities=18%  Similarity=0.415  Sum_probs=20.3

Q ss_pred             CcccccCCCCccccchhhhhhh
Q 028899           81 AGYYCSVCECVVKDSANYLDHI  102 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~  102 (202)
                      --|.|++|+..|..+.+|..|.
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            3699999999999999999997

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.36  E-value=0.099  Score=31.00  Aligned_cols=22  Identities=23%  Similarity=0.777  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (43)
T 2yrm_A           10 AFFCNECDCRFSEEASLKRHTL   31 (43)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CEECCCCCCeeCChHHHHHHHH
Confidence            4899999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.35  E-value=0.1  Score=31.18  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQV   33 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHT
T ss_pred             CCeECCcCChhhCCHHHHHHHHH
Confidence            35999999999999999999975

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.35  E-value=0.08  Score=31.54  Aligned_cols=22  Identities=18%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eor_A           12 PYNCEECGKAFIHDSQLQEHQR   33 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH
T ss_pred             CccCCCCCCCcCCHHHHHHHHH
Confidence            4999999999999999999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.24  E-value=0.11  Score=31.14  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=21.2

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|....+|..|+..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytt_A           11 KPYQCSECGKSFSGSYRLTQHWIT   34 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHTH
T ss_pred             CCeeCCCCCcccCCHHHHHHHHHH
Confidence            358999999999999999999753

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.23  E-value=0.11  Score=30.98  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=20.8

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRR   33 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHT
T ss_pred             CCeECCCCCceeCCHHHHHHHHH
Confidence            35999999999999999999976

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.23  E-value=0.096  Score=31.35  Aligned_cols=23  Identities=13%  Similarity=0.359  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            35899999999999999999975

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.18  E-value=0.12  Score=30.78  Aligned_cols=24  Identities=13%  Similarity=0.108  Sum_probs=21.2

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|....+|..|+..
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQRI   34 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCeeCCCCCchhCCHHHHHHHHHH
Confidence            359999999999999999999764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=90.18  E-value=0.14  Score=27.88  Aligned_cols=22  Identities=18%  Similarity=0.517  Sum_probs=19.7

Q ss_pred             cccc--CCCCccccchhhhhhhcC
Q 028899           83 YYCS--VCECVVKDSANYLDHING  104 (202)
Q Consensus        83 fyC~--vCd~~~kDs~~~ldH~n~  104 (202)
                      |-|+  .|+..|.....|..|+..
T Consensus         4 ~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            4 YSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             BCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CcCcCCCCCCccCCHHHHHHHHHH
Confidence            7899  899999999999999753

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.16  E-value=0.1  Score=31.21  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=21.0

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|.....|..|+..
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQRI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCcCCcccCCHHHHHHHHHH
Confidence            358999999999999999999763

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.14  E-value=0.1  Score=31.01  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           12 PYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGG
T ss_pred             CEECCCCChhhCChHHHHHHHH
Confidence            5999999999999999999975

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.13  E-value=0.072  Score=31.93  Aligned_cols=22  Identities=32%  Similarity=0.535  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoz_A           12 PYSCNVCGKAFVLSAHLNQHLR   33 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHHH
T ss_pred             CeECcccChhhCCHHHHHHHHH
Confidence            5999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=90.11  E-value=0.09  Score=31.48  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emj_A           12 PFECAECGKSFSISSQLATHQR   33 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CEECCCCCcccCCHHHHHHHHH
Confidence            5999999999999999999974

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=90.08  E-value=0.12  Score=30.83  Aligned_cols=23  Identities=17%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             cccccCCCCccccchhhhhhhcC
Q 028899           82 GYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      -|-|++|+..|....+|..|+..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQNV   34 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGGG
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            48999999999999999999754

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=90.07  E-value=0.096  Score=32.48  Aligned_cols=23  Identities=26%  Similarity=0.625  Sum_probs=20.7

Q ss_pred             cccccCCCCccccchhhhhhhcC
Q 028899           82 GYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      -|.|++|+..|.....|..|++.
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~   51 (57)
T 1bbo_A           29 PYHCTYCNFSFKTKGNLTKHMKS   51 (57)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CccCCCCCchhcCHHHHHHHHHH
Confidence            49999999999999999999864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.05  E-value=0.085  Score=31.21  Aligned_cols=22  Identities=18%  Similarity=0.389  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2eox_A           12 SYNCNECGKAFTRIFHLTRHQK   33 (44)
T ss_dssp             CEEETTTTEEESSSHHHHTTHH
T ss_pred             CeECcccCcccCCHHHHHHHHH
Confidence            4899999999999999999974

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.04  E-value=0.11  Score=31.05  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            35999999999999999999975

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=90.02  E-value=0.1  Score=32.34  Aligned_cols=22  Identities=18%  Similarity=0.295  Sum_probs=19.7

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .|-|++|+..|....+|..|+.
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~   25 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLR   25 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHH
T ss_pred             CccCCCCcchhCChHHHHHHHH
Confidence            5899999999999999999976

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=89.99  E-value=0.13  Score=27.85  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             cccc--CCCCccccchhhhhhhcC
Q 028899           83 YYCS--VCECVVKDSANYLDHING  104 (202)
Q Consensus        83 fyC~--vCd~~~kDs~~~ldH~n~  104 (202)
                      |-|+  +|+..|.....|..|+..
T Consensus         3 ~~C~~~~C~k~f~~~~~L~~H~~~   26 (31)
T 1sp2_A            3 FMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             cCCcCCCCCcccCCHhHHHHHHHH
Confidence            7898  999999999999999753

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.97  E-value=0.11  Score=31.00  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            35999999999999999999975

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.96  E-value=0.11  Score=31.08  Aligned_cols=23  Identities=13%  Similarity=0.307  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQK   33 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            35999999999999999999975

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.94  E-value=0.11  Score=30.89  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQK   33 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CccCCccChhhCCHHHHHHHHH
Confidence            4899999999999999999964

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.93  E-value=0.11  Score=31.07  Aligned_cols=24  Identities=13%  Similarity=0.101  Sum_probs=21.3

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|....+|..|+..
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCcCCCccCCHHHHHHHHHH
Confidence            359999999999999999999754

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.91  E-value=0.094  Score=31.22  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQA   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHT
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            35899999999999999999975

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.88  E-value=0.12  Score=30.74  Aligned_cols=23  Identities=13%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999975

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.76  E-value=0.099  Score=31.30  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yto_A           12 PYKCSDCGKAFTRKSGLHIHQQ   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CEECcccCCccCCHhHHHHHHH
Confidence            5999999999999999999974

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=89.70  E-value=0.12  Score=30.99  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             cccccCCCCccccchhhhhhhcC
Q 028899           82 GYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      -|-|++|+..|....+|..|+..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el6_A           12 PYKCSQCEKSFSGKLRLLVHQRM   34 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            49999999999999999999753

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.69  E-value=0.14  Score=30.56  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGG
T ss_pred             cCeECCCCCCeeCCHHHHHHHhh
Confidence            35899999999999999999975

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.69  E-value=0.11  Score=30.98  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.68  E-value=0.099  Score=30.48  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A           11 PYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             SEECTTTCCEESSHHHHHHHTH
T ss_pred             CEeCCCcChhhCCHHHHHHHHH
Confidence            4999999999999999999974

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=89.64  E-value=0.099  Score=27.49  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=19.3

Q ss_pred             cccc--CCCCccccchhhhhhhc
Q 028899           83 YYCS--VCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~--vCd~~~kDs~~~ldH~n  103 (202)
                      |-|+  .|+..|....+|..|+.
T Consensus         3 ~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            3 YVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             EEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCcCCcCcCccCCHHHHHHHHH
Confidence            7899  99999999999999975

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.64  E-value=0.1  Score=31.14  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytj_A           12 PYICAECGKAFTIRSNLIKHQK   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCChhhCCHHHHHHHHH
Confidence            5999999999999999999974

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=89.63  E-value=0.14  Score=30.60  Aligned_cols=22  Identities=14%  Similarity=0.211  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ely_A           12 PFKCVECGKGFSRRSALNVHHK   33 (46)
T ss_dssp             SBCCSSSCCCBSSTTHHHHHHH
T ss_pred             CcccCccCcccCCHHHHHHHHH
Confidence            5999999999999999999975

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.62  E-value=0.1  Score=31.22  Aligned_cols=23  Identities=13%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECCcCCchhCCHHHHHHHHH
Confidence            35999999999999999999964

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.60  E-value=0.1  Score=31.12  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emy_A           12 PYECHECGKAFSRKYQLISHQR   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CcCCCCCCcccCcHHHHHHHHH
Confidence            5999999999999999999975

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.56  E-value=0.12  Score=30.84  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|.....|..|+..
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQLI   34 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            359999999999999999999754

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=89.53  E-value=0.11  Score=32.47  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=20.5

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        23 k~~~C~~C~k~f~~~~~L~~H~~   45 (54)
T 1yui_A           23 QPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999974

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.52  E-value=0.12  Score=30.85  Aligned_cols=23  Identities=13%  Similarity=0.296  Sum_probs=20.5

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSM   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHH
Confidence            35899999999999999999964

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.52  E-value=0.1  Score=31.03  Aligned_cols=22  Identities=18%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eow_A           12 PYKCNECGKAFRARSSLAIHQA   33 (46)
T ss_dssp             CEECTTSCCEESSHHHHHHHHH
T ss_pred             CeeccccCChhcCHHHHHHHHH
Confidence            4899999999999999999974

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.49  E-value=0.11  Score=30.96  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|....+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQ   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999975

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.48  E-value=0.15  Score=30.46  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQR   33 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGG
T ss_pred             CCeeCcccCchhCCHHHHHHHHH
Confidence            35999999999999999999975

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.46  E-value=0.12  Score=31.05  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytm_A           12 PYKCMECGKAFGDNSSCTQHQR   33 (46)
T ss_dssp             SSSBTTTTBCCSSHHHHHHHHH
T ss_pred             CcCCCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999975

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.43  E-value=0.12  Score=30.80  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=21.2

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|.....|..|+..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQRI   34 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCchhCChHHHHHHHhh
Confidence            359999999999999999999764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.38  E-value=0.11  Score=31.08  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            35999999999999999999974

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.37  E-value=0.12  Score=30.74  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eml_A           12 PYECSVCGKAFSHRQSLSVHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG
T ss_pred             CeeCCCcCCccCCHHHHHHHHH
Confidence            5899999999999999999975

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=89.35  E-value=0.2  Score=30.31  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             CCCcccccCCCCccccchhhhhhhc
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      ..--|-|++|+..|.....|..|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~   33 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKL   33 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHH
Confidence            3446999999999999999999975

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=89.34  E-value=0.14  Score=30.57  Aligned_cols=22  Identities=18%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emk_A           12 PYECKECGKAFSQTTHLIQHQR   33 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHH
T ss_pred             ceECCCCCchhCCHHHHHHHHH
Confidence            4999999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.28  E-value=0.1  Score=31.06  Aligned_cols=23  Identities=17%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQR   33 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHT
T ss_pred             cCccCCCCCCccCChHHHHHHHH
Confidence            45899999999999999999975

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.26  E-value=0.14  Score=30.47  Aligned_cols=24  Identities=17%  Similarity=0.350  Sum_probs=21.1

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|.....|..|+..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQRI   34 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHTT
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHh
Confidence            358999999999999999999753

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.24  E-value=0.11  Score=31.01  Aligned_cols=22  Identities=18%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoo_A           12 PYGCNECGKNFGRHSHLIEHLK   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CEEccccCcccCCHHHHHHHHH
Confidence            5999999999999999999974

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.23  E-value=0.16  Score=30.34  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|.....|..|+..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMRT   34 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCcCCCccChhhCChHHHHHHHHH
Confidence            358999999999999999999753

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.20  E-value=0.14  Score=30.56  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHM   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGG
T ss_pred             cCccCCCccchhCCHHHHHHHHH
Confidence            35999999999999999999975

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.19  E-value=0.12  Score=30.55  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|....+|..|+.
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (44)
T 2emx_A           10 PFGCSCCEKAFSSKSYLLVHQQ   31 (44)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5999999999999999999975

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.17  E-value=0.13  Score=30.62  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|....+|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHER   33 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHHH
T ss_pred             CeECCCCCCccCchHHHHHHHH
Confidence            4899999999999999999974

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=89.10  E-value=0.13  Score=31.80  Aligned_cols=21  Identities=29%  Similarity=0.579  Sum_probs=19.6

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|.....|..|+.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~   22 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIR   22 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH
T ss_pred             CcCCCCcCcCCCHHHHHHHHH
Confidence            789999999999999999975

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.05  E-value=0.12  Score=30.91  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.8

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECcccCchhCCHHHHHHHHH
Confidence            35999999999999999999975

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=89.02  E-value=0.15  Score=30.35  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el4_A           12 PYGCSQCAKTFSLKSQLIVHQR   33 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHGG
T ss_pred             ceECCCCCchhCCHHHHHHHHH
Confidence            4999999999999999999975

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=89.00  E-value=0.14  Score=30.57  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=21.2

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|.....|..|+..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQKI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTG
T ss_pred             cCcCCCCCcchhCCHHHHHHHHHh
Confidence            349999999999999999999754

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.96  E-value=0.14  Score=30.41  Aligned_cols=22  Identities=14%  Similarity=0.200  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2epw_A           12 PCKCTECGKAFCWKSQLIMHQR   33 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHH
T ss_pred             CeeCCCCCCccCCHHHHHHHHH
Confidence            4999999999999999999974

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.95  E-value=0.12  Score=30.84  Aligned_cols=23  Identities=30%  Similarity=0.683  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQK   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            35999999999999999999974

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=88.90  E-value=0.15  Score=32.03  Aligned_cols=22  Identities=18%  Similarity=0.498  Sum_probs=19.0

Q ss_pred             ccccCCCCccccchhhhhhhcC
Q 028899           83 YYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      |-|++|+..|.....|..|+..
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~   24 (60)
T 2adr_A            3 FVCEVCTRAFARQEHLKRHYRS   24 (60)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHT
T ss_pred             CcCCCCccccCCHHHHHHHHHH
Confidence            7899999999999999988754

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=88.87  E-value=0.15  Score=30.29  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCeECCccccccCChHHHHHHHH
Confidence            35999999999999999999975

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.84  E-value=0.12  Score=30.78  Aligned_cols=22  Identities=14%  Similarity=0.318  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|....+|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yso_A           12 SHQCRECGEIFFQYVSLIEHQV   33 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CEEccccChhhCCHHHHHHHHH
Confidence            4999999999999999999964

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.77  E-value=0.15  Score=30.38  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yu8_A           11 KPYKCNECGKVFTQNSHLARHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSSHHHHHHTH
T ss_pred             CCeECCcCCchhCCHHHHHHHHH
Confidence            35999999999999999999974

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.68  E-value=0.13  Score=30.54  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHH
Confidence            35999999999999999999974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=88.68  E-value=0.11  Score=30.91  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~   31 (45)
T 2epq_A           10 PYSCPVCGLRFKRKDRMSYHVR   31 (45)
T ss_dssp             SSEETTTTEECSCHHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999975

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=88.68  E-value=0.21  Score=35.38  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=16.9

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|++
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~   49 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLR   49 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHH
T ss_pred             CCEECCCCCCCcCcHHHHhhhhh
Confidence            34778888888888777777764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=88.68  E-value=0.071  Score=33.57  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .|-|++|+..|.....|..|+.
T Consensus        30 ~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A           30 PYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            5999999999999999999974

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.66  E-value=0.15  Score=30.39  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|.....|..|+..
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeeCcccCcccCChHHHHHHHHH
Confidence            359999999999999999999753

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=88.63  E-value=0.14  Score=31.37  Aligned_cols=23  Identities=17%  Similarity=0.562  Sum_probs=20.8

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -||-|++|-..|.....+..|.-
T Consensus         4 EGFiCP~C~~~l~s~~~L~~Hye   26 (34)
T 3mjh_B            4 EGFICPQCMKSLGSADELFKHYE   26 (34)
T ss_dssp             EEEECTTTCCEESSHHHHHHHHH
T ss_pred             cccCCcHHHHHcCCHHHHHHHHH
Confidence            37999999999999999999963

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.45  E-value=0.14  Score=30.52  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHWR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEeCCcCCCccCCHHHHHHHHH
Confidence            35999999999999999999975

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.33  E-value=0.13  Score=30.64  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.1

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      --|-|++|+..|.....|..|+..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQKV   34 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHh
Confidence            359999999999999999999753

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=88.21  E-value=0.15  Score=31.59  Aligned_cols=22  Identities=23%  Similarity=0.569  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|....+|..|+.
T Consensus        32 ~~~C~~C~~~f~~~~~l~~H~~   53 (57)
T 3uk3_C           32 PYKCEFCEYAAAQKTSLRYHLE   53 (57)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcCCCCCcchhCCHHHHHHHHH
Confidence            4999999999999999999975

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.19  E-value=0.15  Score=30.40  Aligned_cols=23  Identities=17%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQV   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHH
T ss_pred             cCeECCCCCchhCCHHHHHHHHH
Confidence            35999999999999999999975

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=88.12  E-value=0.16  Score=33.11  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=18.5

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .|-|++|+..|.....|..|+.
T Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           49 PFQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CEECTTTCCEESCHHHHHHHHT
T ss_pred             CeECCCCCchhCCHHHHHHHHH
Confidence            4889999999988888888875

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.98  E-value=0.16  Score=30.29  Aligned_cols=22  Identities=14%  Similarity=0.318  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|....+|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2enc_A           12 PFKCEECGKGFYTNSQCYSHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CcCCCCCCCcCCChHHHHHHHH
Confidence            5999999999999999999974

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.97  E-value=0.16  Score=30.29  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytd_A           11 KPYKCSECGKAFHRHTHLNEHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCCeeCChHHHHHHHH
Confidence            35999999999999999999964

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.92  E-value=0.18  Score=29.92  Aligned_cols=22  Identities=14%  Similarity=0.063  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en8_A           12 SHTCDECGKNFCYISALRIHQR   33 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CeECCCcCcccCCHHHHHHHHH
Confidence            4999999999999999999975

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=87.90  E-value=0.26  Score=32.36  Aligned_cols=25  Identities=20%  Similarity=0.476  Sum_probs=20.1

Q ss_pred             CCCcccccCCCCccccchhhhhhhc
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      ....|-|++|+..|.....|..|+.
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~   38 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKT   38 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHH
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHH
Confidence            4456889999999998888888874

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.80  E-value=0.16  Score=30.21  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQR   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHG
T ss_pred             CCeECCCcChhhCCHHHHHHHHH
Confidence            35999999999999999999975

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=87.74  E-value=0.15  Score=33.80  Aligned_cols=21  Identities=19%  Similarity=0.651  Sum_probs=17.7

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|....+|..|++
T Consensus         5 y~C~~C~k~F~~~~~L~~H~~   25 (60)
T 4gzn_C            5 FFCNFCGKTYRDASGLSRHRR   25 (60)
T ss_dssp             EECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCCCCCEeCCHHHHHHHHH
Confidence            788888888888888888864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.72  E-value=0.3  Score=31.68  Aligned_cols=25  Identities=20%  Similarity=0.131  Sum_probs=18.0

Q ss_pred             CCcccccCCCCccccchhhhhhhcC
Q 028899           80 QAGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        80 ~~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      .--|-|++|+..|.....|..|+..
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~~   31 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHERI   31 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3457788888888877777777653

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.49  E-value=0.17  Score=32.93  Aligned_cols=22  Identities=23%  Similarity=0.573  Sum_probs=20.3

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        37 ~~~C~~C~~~f~~~~~L~~H~~   58 (70)
T 1x5w_A           37 PFKCNYCSFDTKQPSNLSKHMK   58 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CEeCCCCCCccCCHHHHHHHHH
Confidence            4999999999999999999974

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=87.45  E-value=0.19  Score=33.32  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=20.5

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        32 p~~C~~C~k~F~~~~~L~~H~~   53 (60)
T 4gzn_C           32 PRSCPECGKCFRDQSEVNRHLK   53 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHGG
T ss_pred             CeECCCCCCCcCCHHHHHHHhC
Confidence            5999999999999999999975

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.42  E-value=0.17  Score=30.11  Aligned_cols=23  Identities=13%  Similarity=0.342  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|....+|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            34899999999999999999975

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.29  E-value=0.17  Score=33.14  Aligned_cols=22  Identities=18%  Similarity=0.493  Sum_probs=19.6

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        42 ~~~C~~C~~~f~~~~~L~~H~~   63 (72)
T 1x6e_A           42 PYKCLECGKAFSQNSGLINHQR   63 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            4899999999999999999974

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=87.26  E-value=0.17  Score=32.33  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.1

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|....+|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~   31 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYV   31 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHH
T ss_pred             cceECCCCcchhCCHHHHHHHHH
Confidence            35899999999999999999864

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.24  E-value=0.18  Score=33.48  Aligned_cols=27  Identities=26%  Similarity=0.535  Sum_probs=22.6

Q ss_pred             CcccccCCCCccccchhhhhhhcCHHHHH
Q 028899           81 AGYYCSVCECVVKDSANYLDHINGKKHQR  109 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~k~H~~  109 (202)
                      --|-|++|+..|.....|..|+.  .|..
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~--~h~~   32 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQR--KHAE   32 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH--HHHH
T ss_pred             cCeECCCCCCeeCCHHHHHHHHH--Hhhc
Confidence            35899999999999999999974  4654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=87.09  E-value=0.18  Score=32.26  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      ..|-|++|+..|.....|..|+.
T Consensus        39 ~~~~C~~C~k~f~~~~~L~~H~~   61 (66)
T 2drp_A           39 KVYPCPFCFKEFTRKDNMTAHVK   61 (66)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHH
Confidence            45999999999999999999975

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.98  E-value=0.16  Score=30.27  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|....+|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en6_A           11 KPYGCNECGKTFSQKSILSAHQR   33 (46)
T ss_dssp             CCEEETTTTEEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCchHHHHHHHH
Confidence            35899999999999999999975

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=86.97  E-value=0.19  Score=32.99  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=21.5

Q ss_pred             CCcccccCCCCccccchhhhhhhc
Q 028899           80 QAGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        80 ~~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .--|-|++|+..|.....|..|++
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~   35 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQR   35 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCccCCCCCCccCCHHHHHHHHH
Confidence            346999999999999999999986

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=86.80  E-value=0.19  Score=33.26  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=19.8

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .-|-|++|+..|.....|..|+.
T Consensus        44 ~~~~C~~C~~~f~~~~~L~~H~~   66 (77)
T 2ct1_A           44 AKFHCPHCDTVIARKSDLGVHLR   66 (77)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCCCCCccCCHHHHHHHHH
Confidence            35899999999999999998874

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=86.65  E-value=0.19  Score=33.30  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~   36 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHIL   36 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCcCchhCCHHHHHHHHH
Confidence            35999999999999999999974

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=86.39  E-value=0.2  Score=35.51  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=20.4

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|....+|..|+.
T Consensus        56 ~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           56 VFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             SEECTTSSCEESSHHHHHHHHH
T ss_pred             ccCCCCCCCEeCCHHHHHHhCc
Confidence            5999999999999999999975

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=86.33  E-value=0.26  Score=33.50  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .-|.|++|+..|.....|..|+.
T Consensus        64 ~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           64 KPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CceECCCccchhCCHHHHHHHHH
Confidence            45999999999999999999974

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=85.66  E-value=0.25  Score=28.17  Aligned_cols=22  Identities=18%  Similarity=0.463  Sum_probs=19.6

Q ss_pred             cccccC--CCCccccchhhhhhhc
Q 028899           82 GYYCSV--CECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~v--Cd~~~kDs~~~ldH~n  103 (202)
                      -|-|++  |+..|..+..|..|+.
T Consensus         8 ~~~C~~~~C~k~f~~~~~L~~H~~   31 (37)
T 1va1_A            8 QHICHIQGCGKVYGKTSHLRAHLR   31 (37)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCccCCHHHHHHHHH
Confidence            488996  9999999999999974

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.41  E-value=0.26  Score=32.61  Aligned_cols=23  Identities=13%  Similarity=0.323  Sum_probs=20.4

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .-|-|++|+..|.....|..|+.
T Consensus        37 ~~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A           37 LRFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             cccCCCCCCchhCCHHHHHHHHH
Confidence            35999999999999999999963

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.34  E-value=0.28  Score=29.65  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             cccccC--CCCccccchhhhhhhc
Q 028899           82 GYYCSV--CECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~v--Cd~~~kDs~~~ldH~n  103 (202)
                      -|-|++  |+..|.....|..|+.
T Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~r   32 (38)
T 2eln_A            9 LLKCPTDGCDYSTPDKYKLQAHLK   32 (38)
T ss_dssp             CEECSSSSCCCEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCccCCHHHHHHHHH
Confidence            489987  9999999999999974

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=85.01  E-value=0.51  Score=32.07  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=17.2

Q ss_pred             CCcccccCCCCccccchhhhhhhc
Q 028899           80 QAGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        80 ~~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      ..-|-|++|+..|.....|..|+.
T Consensus         6 ~~~~~C~~C~~~f~~~~~l~~H~~   29 (96)
T 2dmd_A            6 SGPHKCEVCGKCFSRKDKLKTHMR   29 (96)
T ss_dssp             CCCCCBTTTTBCCCCHHHHHHHGG
T ss_pred             CcCeECCCCCCccCCHHHHHHHHH
Confidence            345777777777777777777765

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=84.88  E-value=0.45  Score=32.28  Aligned_cols=25  Identities=20%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             CCCcccccCCCCccccchhhhhhhc
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      ....|-|++|+..|.....|..|+.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~   28 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKL   28 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHH
T ss_pred             CCCCeECCCCCCccCChHHHHHHHH
Confidence            3446788888888888888888864

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.78  E-value=0.28  Score=34.44  Aligned_cols=22  Identities=23%  Similarity=0.302  Sum_probs=19.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        54 ~~~C~~C~k~F~~~~~L~~H~~   75 (98)
T 2gqj_A           54 ALKCQHCRKQFKSKAGLNYHTM   75 (98)
T ss_dssp             HHSCSSSCCCCSCHHHHHHHHH
T ss_pred             CEECCCCCCccCCHHHHHHHHH
Confidence            5889999999999999999864

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=84.65  E-value=0.36  Score=31.88  Aligned_cols=25  Identities=20%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             CCcccccCCCCccccchhhhhhhcC
Q 028899           80 QAGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        80 ~~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      .--|-|++|+..|.....|..|+..
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~~   40 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRRT   40 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHH
Confidence            3469999999999999999999863

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=84.64  E-value=0.33  Score=33.06  Aligned_cols=23  Identities=17%  Similarity=0.566  Sum_probs=20.1

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      ..|.|++|+..|.....|..|+.
T Consensus        63 ~~~~C~~C~~~f~~~~~l~~H~~   85 (96)
T 2dmd_A           63 RPFKCQICPYASRNSSQLTVHLR   85 (96)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHH
Confidence            35899999999999999999975

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=84.53  E-value=0.56  Score=31.89  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=21.5

Q ss_pred             CCCcccccCCCCccccchhhhhhhc
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      ..--|-|++|+..|.....|..|+.
T Consensus        10 ~ekpy~C~~CgK~F~~~s~L~~H~r   34 (66)
T 2epp_A           10 EAGILPCGLCGKVFTDANRLRQHEA   34 (66)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHHHH
T ss_pred             CccCcCCCCCCCccCCHHHHHhhhh
Confidence            3346999999999999999999964

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=84.51  E-value=0.33  Score=33.20  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=19.7

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|.|++|+..|.....|..|+.
T Consensus        75 ~~~C~~C~~~f~~~~~l~~H~~   96 (100)
T 2ebt_A           75 PFQCGVCNRSFSRSDHLALHMK   96 (100)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CeECCCCcCccCCHHHHHHHHH
Confidence            4899999999999999999974

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=84.38  E-value=0.32  Score=32.62  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .|.|++|+..|.....|..|+.
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~   83 (90)
T 1a1h_A           62 PFACDICGRKFARSDERKRHTK   83 (90)
T ss_dssp             CEECTTTCCEESSHHHHHHHHG
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            4899999999999999999975

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=84.32  E-value=0.29  Score=32.12  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=19.9

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      ..|.|++|+..|....+|..|+.
T Consensus        56 ~~~~C~~C~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A           56 KPHKCQVCGKAFSQSSNLITHSR   78 (82)
T ss_dssp             CCEECTTTSCEESSHHHHHHHHH
T ss_pred             CCCcCCCcchhhCChHHHHHHHH
Confidence            35899999999999999999864

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=84.28  E-value=0.3  Score=32.06  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=18.6

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|.....|..|+.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~   22 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLL   22 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHH
T ss_pred             ccCCCCcccccCchhHHHHHH
Confidence            779999999999999999975

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=84.22  E-value=0.29  Score=32.09  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        45 ~~~C~~C~k~f~~~~~L~~H~~   66 (74)
T 2lce_A           45 PYRCNICGAQFNRPANLKTHTR   66 (74)
T ss_dssp             SEECTTTCCEESCHHHHHHHHH
T ss_pred             CEECCCCCchhCCHHHHHHHHH
Confidence            4999999999999999999974

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=84.10  E-value=0.35  Score=27.35  Aligned_cols=22  Identities=14%  Similarity=0.365  Sum_probs=19.4

Q ss_pred             ccccc--CCCCccccchhhhhhhc
Q 028899           82 GYYCS--VCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~--vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|+  .|+..|....+|..|+.
T Consensus         6 ~~~C~~~~C~k~f~~~~~L~~H~~   29 (38)
T 1bhi_A            6 PFLCTAPGCGQRFTNEDHLAVHKH   29 (38)
T ss_dssp             CEECCCTTTCCEESSHHHHHHHHH
T ss_pred             ceECCCCCCCcccCCHHHHHHHHH
Confidence            48899  49999999999999974

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=84.09  E-value=0.62  Score=32.31  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=14.5

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .-|.|++|+..|.....|..|+.
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~   38 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHER   38 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHH
Confidence            34666666666666666666653

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=83.92  E-value=0.64  Score=28.83  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             CCcccccCCCCccccchhhhhhhc
Q 028899           80 QAGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        80 ~~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .--|-|++|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIK   33 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH
Confidence            345999999999999999999964

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.92  E-value=0.37  Score=31.82  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|.....|..|+.
T Consensus        46 ~~~C~~C~~~f~~~~~L~~H~~   67 (77)
T 2cot_A           46 PYKCDECGKAFIQRSHLIGHHR   67 (77)
T ss_dssp             SEECSSSCCEESSHHHHHHHGG
T ss_pred             CeeCCCCCCccCCHHHHHHHHH
Confidence            4999999999999999999985

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=83.79  E-value=0.38  Score=32.15  Aligned_cols=22  Identities=18%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|....+|..|+.
T Consensus        65 ~~~C~~C~~~f~~~~~l~~H~~   86 (89)
T 2wbs_A           65 PFQCQKCDRAFSRSDHLALHMK   86 (89)
T ss_dssp             CEECSSSSCEESSHHHHHHHGG
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999975

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.66  E-value=0.33  Score=32.23  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        14 k~~~C~~C~~~f~~~~~l~~H~~   36 (86)
T 1x6h_A           14 KPYACSHCDKTFRQKQLLDMHFK   36 (86)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHH
Confidence            34899999999999999999974

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.60  E-value=0.33  Score=34.12  Aligned_cols=24  Identities=17%  Similarity=0.447  Sum_probs=21.2

Q ss_pred             CcccccCCCCccccchhhhhhhcC
Q 028899           81 AGYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      .-|.|++|+..|.....|..|+..
T Consensus        64 ~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           64 KPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCeeCCCCcchhcCHHHHHHHHHH
Confidence            359999999999999999999853

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.51  E-value=0.4  Score=33.60  Aligned_cols=23  Identities=17%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             CcccccCCCCccc-cchhhhhhhc
Q 028899           81 AGYYCSVCECVVK-DSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~k-Ds~~~ldH~n  103 (202)
                      .-|-|++|+..|. ....|..|++
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~~   46 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHME   46 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHH
T ss_pred             CCcCCCCCCCChhhhHHHHHHHHH
Confidence            4599999999999 9999999984

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=82.46  E-value=0.52  Score=32.72  Aligned_cols=23  Identities=22%  Similarity=0.527  Sum_probs=20.8

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .-|-|++|+..|.....|..|++
T Consensus        44 ~~~~C~~C~~~f~~~~~l~~H~~   66 (106)
T 2ee8_A           44 RPYTCDICHKAFRRQDHLRDHRY   66 (106)
T ss_dssp             CCCBCSSSCCBCSCHHHHHHHGG
T ss_pred             CCcCCCCccchhCCHHHHHHHHH
Confidence            35999999999999999999975

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.33  E-value=0.3  Score=34.62  Aligned_cols=25  Identities=12%  Similarity=0.175  Sum_probs=21.4

Q ss_pred             CcccccCCCCccccchhhhhhhcCH
Q 028899           81 AGYYCSVCECVVKDSANYLDHINGK  105 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n~k  105 (202)
                      .-|.|++|+..|.....|..|+..-
T Consensus        79 ~~~~C~~C~k~f~~~~~L~~H~~~h  103 (115)
T 2dmi_A           79 KVLKCMYCGHSFESLQDLSVHMIKT  103 (115)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHHHHT
T ss_pred             cceECCCCCCccCCHHHHHHHHHHh
Confidence            3599999999999999999997543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=82.10  E-value=0.4  Score=32.52  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=19.5

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|....+|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~   24 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIR   24 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHH
Confidence            3889999999999999999975

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=81.84  E-value=0.65  Score=32.79  Aligned_cols=25  Identities=16%  Similarity=0.214  Sum_probs=19.2

Q ss_pred             CCCcccccCCCCccccchhhhhhhc
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      ....|-|++|+..|.....|..|+.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~   28 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNR   28 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHH
Confidence            3456888888888888888888864

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.70  E-value=0.43  Score=31.64  Aligned_cols=23  Identities=22%  Similarity=0.470  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      ..|-|++|+..|.....|..|+.
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~   68 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHAD   68 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             cceECCCCCChhCCHHHHHHHHH
Confidence            46999999999999999999974

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=81.02  E-value=0.46  Score=31.80  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.9

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      .-|.|++|+..|.....|..|+.
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~   55 (90)
T 1a1h_A           33 KPFQCRICMRNFSRSDHLTTHIR   55 (90)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999986

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=80.96  E-value=0.83  Score=32.21  Aligned_cols=23  Identities=26%  Similarity=0.706  Sum_probs=20.7

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|.....|..|+.
T Consensus        24 kpy~C~~C~k~F~~~~~L~~H~~   46 (88)
T 1x6f_A           24 STYQCKHCDSKLQSTAELTSHLN   46 (88)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCcCCCCCCEeCCHHHHHHHHH
Confidence            35999999999999999999975

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=80.90  E-value=0.58  Score=32.78  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.8

Q ss_pred             cccccCCCCccccchhhhhhhcC
Q 028899           82 GYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      -|.|++|+..|.....|..|+..
T Consensus        37 ~~~C~~C~~~f~~~~~l~~H~~~   59 (110)
T 2csh_A           37 PYGCGVCGKKFKMKHHLVGHMKI   59 (110)
T ss_dssp             SEECTTTSCEESSSHHHHHHHTT
T ss_pred             CccCCCCCcccCCHHHHHHHHHH
Confidence            49999999999999999999863

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=80.70  E-value=0.62  Score=31.05  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=20.4

Q ss_pred             CCcccccC--CCCccccchhhhhhhcC
Q 028899           80 QAGYYCSV--CECVVKDSANYLDHING  104 (202)
Q Consensus        80 ~~GfyC~v--Cd~~~kDs~~~ldH~n~  104 (202)
                      ...|.|++  |+..|.....|..|++.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~   29 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRT   29 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTT
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHh
Confidence            45788988  99999888888888763

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=80.27  E-value=0.87  Score=30.99  Aligned_cols=25  Identities=24%  Similarity=0.495  Sum_probs=21.2

Q ss_pred             CCCcccccC--CCCccccchhhhhhhc
Q 028899           79 QQAGYYCSV--CECVVKDSANYLDHIN  103 (202)
Q Consensus        79 ~~~GfyC~v--Cd~~~kDs~~~ldH~n  103 (202)
                      ...-|.|++  |+..|.....|..|++
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~   38 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLR   38 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHH
Confidence            556788997  9999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.4
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	97.82
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	96.53
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	94.16
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	94.14
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	93.74
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	93.7
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.41
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	93.28
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	92.99
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	92.96
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.87
d1fu9a_	36	U-shaped transcription factor, different fingers {	92.56
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	92.43
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	91.88
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	91.45
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	91.39
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	90.89
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	89.52
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	89.2
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	88.05
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	87.27
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	86.35
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	86.28
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	86.22
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	85.3
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	84.52
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	83.41
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	83.32
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	82.65
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	82.02
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	81.79
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	81.62
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	81.18
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	80.15

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.5e-08  Score=68.18  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=28.9

Q ss_pred             CCCcccccCCCCccccchhhhhhhcCHHHHHH
Q 028899           79 QQAGYYCSVCECVVKDSANYLDHINGKKHQRA  110 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~  110 (202)
                      +.+-|||-+|++.|.+..+|..|++|++|.++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksKkHKrr   43 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKR   43 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHH
T ss_pred             CCCEEecccccCccCCHHHHHHHHcccHHHHH
Confidence            44669999999999999999999999999754

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.1e-06  Score=57.16  Aligned_cols=31  Identities=29%  Similarity=0.746  Sum_probs=26.6

Q ss_pred             CcccccCCCCccc-cchh-hhhhhcCHHHHHHc
Q 028899           81 AGYYCSVCECVVK-DSAN-YLDHINGKKHQRAL  111 (202)
Q Consensus        81 ~GfyC~vCd~~~k-Ds~~-~ldH~n~k~H~~~~  111 (202)
                      +-|||++||+.|. ||.+ -..|++|.+|+++.
T Consensus         2 pryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~   34 (61)
T d2vrda1           2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENV   34 (61)
T ss_dssp             CSCEETTTTEECSCCSHHHHHHHTCCTHHHHHH
T ss_pred             CchhhhhhcchhccCChhHHHHHhccHHHHHHH
Confidence            5799999999997 7776 47899999999764

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.53  E-value=0.00042  Score=45.42  Aligned_cols=32  Identities=25%  Similarity=0.442  Sum_probs=28.7

Q ss_pred             CCcccccCCCCccccchhhhhhhcCHHHHHHc
Q 028899           80 QAGYYCSVCECVVKDSANYLDHINGKKHQRAL  111 (202)
Q Consensus        80 ~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~  111 (202)
                      -...||++|+.+|..-....-|..|+.|.+++
T Consensus        19 d~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~l   50 (55)
T d1zu1a2          19 DRSKCCPVCNMTFSSPVVAESHYIGKTHIKNL   50 (55)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHTSHHHHHHH
T ss_pred             CchhhhhhhhcccCCHHHHHHHhhhhHHHHHH
Confidence            34559999999999999999999999999875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.16  E-value=0.0073  Score=35.69  Aligned_cols=23  Identities=22%  Similarity=0.569  Sum_probs=20.8

Q ss_pred             CcccccCCCCccccchhhhhhhc
Q 028899           81 AGYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        81 ~GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      --|-|++|+..|..+.++..|+.
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~r   28 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             ccccCCCCCCcccChHHHHHHcc
Confidence            36999999999999999999974

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.14  E-value=0.0064  Score=34.28  Aligned_cols=21  Identities=24%  Similarity=0.555  Sum_probs=19.4

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|++.|..+..+..|+.
T Consensus         4 y~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           4 FQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             EECTTTCCEESCHHHHHHHHH
T ss_pred             ccCCCCcCEecccccccccCC
Confidence            889999999999999999964

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.011  Score=33.46  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=19.6

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|..+..|..|+.
T Consensus         3 y~C~~C~k~F~~~s~L~~H~r   23 (29)
T d1sp1a_           3 FACPECPKRFMRSDHLSKHIK   23 (29)
T ss_dssp             SCCTTTTCCCSCSHHHHHHHH
T ss_pred             EECCcCCCeecchHHhhhhcC
Confidence            789999999999999999965

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.0061  Score=34.37  Aligned_cols=27  Identities=30%  Similarity=0.696  Sum_probs=25.2

Q ss_pred             ccccCCCCccccchhhhhhhcCHHHHH
Q 028899           83 YYCSVCECVVKDSANYLDHINGKKHQR  109 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~k~H~~  109 (202)
                      |.|..|+-.|+..-++..|+.|+.|.+
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             cccceeeeeEeeccchhHhhhhhhhcc
Confidence            789999999999999999999999854

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.41  E-value=0.013  Score=33.06  Aligned_cols=21  Identities=19%  Similarity=0.515  Sum_probs=19.5

Q ss_pred             ccccCCCCccccchhhhhhhc
Q 028899           83 YYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n  103 (202)
                      |-|++|+..|..+..+..|+.
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           3 FVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCchHcccccC
Confidence            789999999999999999975

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.021  Score=35.97  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=28.1

Q ss_pred             CCcccccCCCCccccchhhhhhhcCHHHHHHc
Q 028899           80 QAGYYCSVCECVVKDSANYLDHINGKKHQRAL  111 (202)
Q Consensus        80 ~~GfyC~vCd~~~kDs~~~ldH~n~k~H~~~~  111 (202)
                      +++=-|.+|+.-|.-+.+.-|||=+++|..+.
T Consensus         4 gp~~eC~lC~vKYs~~~SvrdHiFskqHI~~V   35 (48)
T d2yrka1           4 GTKPECTLCGVKYSARLSIRDHIFSKQHISKV   35 (48)
T ss_dssp             CCCSCCTTTTCCCCSSSCHHHHHTSHHHHHHH
T ss_pred             CCcccCcccceeeeeecchHhhhhhHHHHHHH
Confidence            34557999999999999999999999998654

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.015  Score=32.30  Aligned_cols=20  Identities=20%  Similarity=0.564  Sum_probs=18.7

Q ss_pred             ccccCCCCccccchhhhhhh
Q 028899           83 YYCSVCECVVKDSANYLDHI  102 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~  102 (202)
                      |-|+.|+..|..+.+|..|.
T Consensus         3 y~C~eCgK~F~~~s~L~~Hq   22 (26)
T d1x6ea2           3 YKCLECGKAFSQNSGLINHQ   22 (26)
T ss_dssp             EECSSSCCEESSHHHHHHHH
T ss_pred             ccCCCCcCeeccCcccccCc
Confidence            78999999999999999984

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.014  Score=34.41  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|..+.++..|+.
T Consensus         8 P~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           8 PYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             SEECTTTCCEESCHHHHHHHHH
T ss_pred             CEeCCCCcccccchHHHHHHcc
Confidence            4899999999999999999965

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.014  Score=35.14  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=20.0

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|..+.+|..|+.
T Consensus         5 py~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           5 PYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CccCCCCCCCcCChHHhhccCc
Confidence            4899999999999999999964

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.56  E-value=0.025  Score=33.50  Aligned_cols=23  Identities=30%  Similarity=0.647  Sum_probs=20.1

Q ss_pred             CCCcccccCCCCccccchhhhhh
Q 028899           79 QQAGYYCSVCECVVKDSANYLDH  101 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH  101 (202)
                      ...+=||..||..|..-..|+-|
T Consensus         5 ~~~~rYC~~CDI~Fn~~~T~~aH   27 (36)
T d1fu9a_           5 EVMKKYCSTCDISFNYVKTYLAH   27 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHH
T ss_pred             chhhhHHhhCCceehhHHHHHHH
Confidence            45667999999999998899888

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.018  Score=33.49  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.8

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|....+|..|..
T Consensus         7 py~C~~Cgk~F~~~~~L~~H~r   28 (33)
T d1x6ea1           7 PYGCVECGKAFSRSSILVQHQR   28 (33)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CeeCCCCCCEeCchHHhHhhcc
Confidence            5899999999999999999853

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.029  Score=33.20  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|..+.+|..|..
T Consensus        12 py~C~~CgK~F~~~s~L~~H~r   33 (38)
T d2cota2          12 RYKCDECGKSFSHSSDLSKHRR   33 (38)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CEecCCCCceeeCHHHHHHhCc
Confidence            5899999999999999999964

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.45  E-value=0.035  Score=32.71  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=20.1

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|..+.+|..|+.
T Consensus        11 Py~C~~C~k~F~~~~~L~~H~r   32 (37)
T d1p7aa_          11 PFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CeEeCCCCCEecCHHHHHHHHh
Confidence            5899999999999999999964

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=91.39  E-value=0.033  Score=37.65  Aligned_cols=27  Identities=30%  Similarity=0.626  Sum_probs=25.6

Q ss_pred             cccCCCCccccchhhhhhhcCHHHHHH
Q 028899           84 YCSVCECVVKDSANYLDHINGKKHQRA  110 (202)
Q Consensus        84 yC~vCd~~~kDs~~~ldH~n~k~H~~~  110 (202)
                      ||.||+.++.-..+-+-|.-|++|..+
T Consensus        34 ~CkvC~a~L~seSQriaHYeskkHa~k   60 (72)
T d1zu1a1          34 QCKVCSAVLISESQKLAHYQSRKHANK   60 (72)
T ss_dssp             EETTTTEECCSHHHHHHHHHCHHHHHH
T ss_pred             hHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999765

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.036  Score=32.49  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|..+.+|..|+.
T Consensus         8 Py~C~~C~k~F~~~~~L~~H~r   29 (36)
T d1x6ha2           8 PYACSHCDKTFRQKQLLDMHFK   29 (36)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CEECCCCCCCcCCHhHHHHhCc
Confidence            5899999999999999999963

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.52  E-value=0.077  Score=30.47  Aligned_cols=21  Identities=19%  Similarity=0.556  Sum_probs=19.4

Q ss_pred             ccccC--CCCccccchhhhhhhc
Q 028899           83 YYCSV--CECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~v--Cd~~~kDs~~~ldH~n  103 (202)
                      |.|++  |++.|..+..+..|+.
T Consensus         4 ~~C~~pgC~k~F~r~~~L~~H~r   26 (32)
T d1zfda_           4 YSCDHPGCDKAFVRNHDLIRHKK   26 (32)
T ss_dssp             BCCCCTTCCCCBSSSHHHHHHHG
T ss_pred             eECcCCCCCCeeCCHHHHHHHhh
Confidence            89999  9999999999999964

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.054  Score=30.65  Aligned_cols=21  Identities=19%  Similarity=0.442  Sum_probs=19.5

Q ss_pred             ccccC--CCCccccchhhhhhhc
Q 028899           83 YYCSV--CECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~v--Cd~~~kDs~~~ldH~n  103 (202)
                      |.|++  |++.|..+..|..|++
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r   25 (30)
T d1ubdc3           3 FQCTFEGCGKRFSLDFNLRTHVR   25 (30)
T ss_dssp             EECCSTTCCCEESCHHHHHHHHH
T ss_pred             ccCCCCCCCceECcHHHcCcccc
Confidence            88998  9999999999999974

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.05  E-value=0.089  Score=29.55  Aligned_cols=24  Identities=42%  Similarity=0.682  Sum_probs=21.5

Q ss_pred             cccccCCCCccccchhhhhhhcCH
Q 028899           82 GYYCSVCECVVKDSANYLDHINGK  105 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~k  105 (202)
                      -|-|+.|+--.-||.++.-||.++
T Consensus         2 py~cqyc~yrsadssnlkthiktk   25 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhcc
Confidence            378999999999999999999765

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.35  E-value=0.12  Score=29.25  Aligned_cols=21  Identities=19%  Similarity=0.387  Sum_probs=19.2

Q ss_pred             ccccC--CCCccccchhhhhhhc
Q 028899           83 YYCSV--CECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~v--Cd~~~kDs~~~ldH~n  103 (202)
                      |-|++  |+..|..+..+..|++
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r   25 (30)
T d2glia3           3 HKCTFEGCRKSYSRLENLKTHLR   25 (30)
T ss_dssp             CCCCSTTCCCCCSSHHHHHHHHH
T ss_pred             eeCCCCCCCceECChhHhhhhcC
Confidence            78999  9999999999999974

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.28  E-value=0.11  Score=31.00  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             cccccCCCCccccchhhhhhhcC
Q 028899           82 GYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      .|.|.+|++.|....++=-|.|+
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~   27 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNV   27 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHT
T ss_pred             ccCCCCCCCccCCcccccchHhh
Confidence            59999999999999999999865

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.22  E-value=0.13  Score=31.69  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=20.2

Q ss_pred             cccccCCCCccccchhhhhhhc
Q 028899           82 GYYCSVCECVVKDSANYLDHIN  103 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n  103 (202)
                      -|-|++|+..|..+.+|..|+.
T Consensus        30 py~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1          30 PYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             SEECTTTSCEESSSHHHHHHHT
T ss_pred             CCcCCCcCCEecCHHHHHHHHh
Confidence            5999999999999999999974

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=0.16  Score=28.24  Aligned_cols=23  Identities=17%  Similarity=0.580  Sum_probs=20.9

Q ss_pred             cccccCCCCccccchhhhhhhcC
Q 028899           82 GYYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      -|-|++|.-.-+||.++.-||++
T Consensus         3 pfkcqlcsy~srnssqltvhlr~   25 (29)
T d2dmda3           3 PFKCQICPYASRNSSQLTVHLRS   25 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTT
T ss_pred             cceeeecccccCCchheEEeeec
Confidence            48899999999999999999875

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.52  E-value=0.17  Score=28.19  Aligned_cols=21  Identities=33%  Similarity=0.623  Sum_probs=19.0

Q ss_pred             ccccC--CCCccccchhhhhhhc
Q 028899           83 YYCSV--CECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~v--Cd~~~kDs~~~ldH~n  103 (202)
                      |.|++  |+..|..+..+..|+.
T Consensus         3 f~C~~~gC~K~F~~~~~L~~H~r   25 (28)
T d1ubdc4           3 YVCPFDGCNKKFAQSTNLKSHIL   25 (28)
T ss_dssp             CCCCSTTCCCCCSSTTTTHHHHH
T ss_pred             cCCCCCCcCCcCCCHHHHHHHHh
Confidence            78999  9999999999999864

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.41  E-value=0.23  Score=26.91  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=17.3

Q ss_pred             cccCCCCccccchhhhhhhcC
Q 028899           84 YCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        84 yC~vCd~~~kDs~~~ldH~n~  104 (202)
                      -|++||.-|.....+.-|.++
T Consensus         3 kc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGG
T ss_pred             ccchhhhHhcchhHHHHHhhc
Confidence            499999999888888777654

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.32  E-value=0.19  Score=28.25  Aligned_cols=21  Identities=24%  Similarity=0.651  Sum_probs=18.8

Q ss_pred             ccccC--CCCccccchhhhhhhc
Q 028899           83 YYCSV--CECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~v--Cd~~~kDs~~~ldH~n  103 (202)
                      |.|.+  |+..+.|-.++-.|+.
T Consensus         3 Y~Ck~~gC~K~YtdPSSLRKH~k   25 (29)
T d2glia5           3 YVCKLPGCTKRYTDPSSLRKHVK   25 (29)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHH
T ss_pred             eecccCCCCcccCCHHHHHHHHH
Confidence            78999  9999999999998874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.65  E-value=0.21  Score=27.94  Aligned_cols=20  Identities=40%  Similarity=0.767  Sum_probs=18.6

Q ss_pred             ccccC--CCCccccchhhhhhh
Q 028899           83 YYCSV--CECVVKDSANYLDHI  102 (202)
Q Consensus        83 fyC~v--Cd~~~kDs~~~ldH~  102 (202)
                      |.|++  |+..|..+..+..|+
T Consensus         3 ~~C~~~gC~k~F~~~~~L~~H~   24 (29)
T d1a1ia1           3 YACPVESCDRRFSRSADLTRHI   24 (29)
T ss_dssp             EECCSTTCCCEESSHHHHHHHT
T ss_pred             eECCCCCCCcEECchhHhhhhc
Confidence            88988  999999999999995

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.02  E-value=0.18  Score=29.17  Aligned_cols=18  Identities=22%  Similarity=0.589  Sum_probs=15.3

Q ss_pred             cccCCCCccccchhhhhh
Q 028899           84 YCSVCECVVKDSANYLDH  101 (202)
Q Consensus        84 yC~vCd~~~kDs~~~ldH  101 (202)
                      -|++|+..|+|..-+-.|
T Consensus         7 ~ce~cgk~frdvyhlnrh   24 (35)
T d2epra1           7 ACEICGKIFRDVYHLNRH   24 (35)
T ss_dssp             EETTTTEEESSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhh
Confidence            599999999998766665

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.79  E-value=0.23  Score=27.62  Aligned_cols=20  Identities=20%  Similarity=0.454  Sum_probs=17.5

Q ss_pred             cccccCCCCccccchhhhhh
Q 028899           82 GYYCSVCECVVKDSANYLDH  101 (202)
Q Consensus        82 GfyC~vCd~~~kDs~~~ldH  101 (202)
                      -|-|++|++-|--|.....|
T Consensus         3 Pf~C~~CgrkFArsderkRH   22 (28)
T d1a1ia3           3 PFACDICGRKFARSDERKRH   22 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHH
T ss_pred             Ccccchhhhhhhcchhhhhh
Confidence            48999999999998887777

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.62  E-value=0.29  Score=27.60  Aligned_cols=21  Identities=19%  Similarity=0.441  Sum_probs=18.7

Q ss_pred             cccc--CCCCccccchhhhhhhc
Q 028899           83 YYCS--VCECVVKDSANYLDHIN  103 (202)
Q Consensus        83 fyC~--vCd~~~kDs~~~ldH~n  103 (202)
                      |.|+  -|+..|..+..+..|+.
T Consensus         3 f~C~~~~C~k~F~~~~~L~~H~r   25 (31)
T d1sp2a_           3 FMCTWSYCGKRFTRSDELQRHKR   25 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHT
T ss_pred             CCCcCCCCCcCcCChhHhhhhcC
Confidence            8896  59999999999999975

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.18  E-value=0.23  Score=27.58  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             ccccCCCCccccchhhhhhhcC
Q 028899           83 YYCSVCECVVKDSANYLDHING  104 (202)
Q Consensus        83 fyC~vCd~~~kDs~~~ldH~n~  104 (202)
                      |.|+.|++.+.--.-+..||.+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs   23 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT   23 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH
T ss_pred             ccccccCcccCCHHHHHHHHHH
Confidence            7899999999999889999864

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.15  E-value=0.37  Score=30.20  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             CCCcccccCCCCccccchhhhhh
Q 028899           79 QQAGYYCSVCECVVKDSANYLDH  101 (202)
Q Consensus        79 ~~~GfyC~vCd~~~kDs~~~ldH  101 (202)
                      ..+-|-|-+|+..|.|.+.+..|
T Consensus         3 E~~l~pCG~CgK~Ftd~~rLr~H   25 (53)
T d2eppa1           3 EAGILPCGLCGKVFTDANRLRQH   25 (53)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHH
T ss_pred             ccceeeccccccccCCHHHHhHh
Confidence            34568899999999999999888