Citrus Sinensis ID: 028908

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME
Secondary Structure (PSIPRED)
ccEEEccccccccccccccccccccccEEccccccccccccHHHHHccccEEEEEEEccEEEEEEccccccccHHHHHHHHHHHHHHccccccccHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHccccEEEEEEEccccEEEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEccccccccHHccccccEcccccccccccHHHHcccHHHHHHHcccccEEEEEcccEEEEEccccccHHHccHHHHHHHHHHHHccccEEccccccccccccccccHHHHHHHHHHHHHccccccEHcccccEEEEcccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHcHHHcccEEcccHHHHHHHHccccc
Coil and Loop (DISEMBL)
mfiqtqptpnpsslmfypgkpvmevgsadfpnaraamnsplakslygvdgitrvffgsdfitvtksedtswdlLKPEIFAAIMDFyssgqplfldsetaaakdtaineddsETVAMIKELLETRirpavqddggdieyrgfdpetgTVKLRmqgacsgcpsssvtLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME
Flexible Loop (DISEMBL)
mfiqtqptpnpsslmfyPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITvtksedtswdLLKPEIFAAIMDFYSSGQPLFLDSETAAAKdtaineddseTVAMIKELLetrirpavqddggdieyrgFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME
Low Complexity Region (SEG)
MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME
Disordered region (IsUnstruct)
****************************************LAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLD******************VAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGC****VTLKSGIENMLMHYVP***********************
Disordered Region (DISOPRED)
MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQ******************DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDE*********
Disordered Region (DISEMBL)
*********NPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME
Disordered Region (DISPRO)
MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLD**********INEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVA*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9LIG6	283	NifU-like protein 4, mito	yes	no	1.0	0.713	0.851	1e-101
Q9C8J2	275	NifU-like protein 5, mito	no	no	0.995	0.730	0.801	5e-95
Q8SY96	283	NFU1 iron-sulfur cluster	yes	no	0.940	0.671	0.594	2e-61
B3MRT7	286	NFU1 iron-sulfur cluster	N/A	no	0.945	0.667	0.596	3e-61
B4JWR9	298	NFU1 iron-sulfur cluster	N/A	no	0.950	0.644	0.598	3e-61
Q9QZ23	255	NFU1 iron-sulfur cluster	yes	no	0.935	0.741	0.590	6e-61
B4PZ52	283	NFU1 iron-sulfur cluster	N/A	no	0.945	0.674	0.586	6e-61
B4IMF6	283	NFU1 iron-sulfur cluster	N/A	no	0.940	0.671	0.594	6e-61
B3NYF7	283	NFU1 iron-sulfur cluster	N/A	no	0.940	0.671	0.589	7e-61
B4NE93	289	NFU1 iron-sulfur cluster	N/A	no	0.945	0.660	0.591	1e-60

>sp|Q9LIG6|NIFU4_ARATH NifU-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=NIFU4 PE=2 SV=1

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/202 (85%), Positives = 186/202 (92%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNPSSLMFYPGKPVMEVGSADFPN R+A+ SPLAKS+Y +DG+ RVFFGSDF
Sbjct: 80  MFIQTQSTPNPSSLMFYPGKPVMEVGSADFPNVRSALGSPLAKSIYSIDGVVRVFFGSDF 139

Query: 61  ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
           +TVTKS+D SWD+LKPEIFAA+MDFYSSGQPLFLDS+ AAAKDTAI+EDDSETVAMIKEL
Sbjct: 140 VTVTKSDDVSWDILKPEIFAAVMDFYSSGQPLFLDSQAAAAKDTAISEDDSETVAMIKEL 199

Query: 121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
           LETRIRPAVQDDGGDIEY GFDPE+G VKLRMQGACSGCPSSSVTLKSGIENMLMHYV E
Sbjct: 200 LETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSE 259

Query: 181 VKSVEQELDAEDEVATLAGQME 202
           VK VEQE D EDE  TL+G+M 
Sbjct: 260 VKGVEQEFDGEDEEGTLSGEMR 281

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8J2|NIFU5_ARATH NifU-like protein 5, mitochondrial OS=Arabidopsis thaliana GN=NIFU5 PE=2 SV=1

 Score =  346 bits (888), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 162/202 (80%), Positives = 183/202 (90%), Gaps = 1/202 (0%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNPSSLMF PGKPVME+GSADFPN+R+AM+SPLAK+++ +DG+ RVF+GSDF
Sbjct: 75  MFIQTQSTPNPSSLMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGVVRVFYGSDF 134

Query: 61  ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
           +TVTKS+D +WD+LKP+IFA +MDFYSSGQPLFLDS+  AAKDTAI+EDDSETVAMIKEL
Sbjct: 135 VTVTKSDDVTWDILKPDIFAVVMDFYSSGQPLFLDSQATAAKDTAIHEDDSETVAMIKEL 194

Query: 121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
           LETRIRP+VQDDGGDIEY GFD ETG VKLRMQGACSGCPSSSVTLKSGIENMLMHYV E
Sbjct: 195 LETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSE 254

Query: 181 VKSVEQELDAEDEVATLAGQME 202
           VK VEQE D E+E  T +G ME
Sbjct: 255 VKGVEQEFDGEEE-GTSSGPME 275

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8SY96|NFU1_DROME NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1

 Score =  234 bits (598), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/195 (59%), Positives = 144/195 (73%), Gaps = 5/195 (2%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSD 59
           MFIQTQ TPNP SL F PG  V+  G+  DFPN   A NSPLAK L+ V+G+  VFFG+D
Sbjct: 67  MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGAD 126

Query: 60  FITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
           F+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKE
Sbjct: 127 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKE 184

Query: 120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
           LL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+P
Sbjct: 185 LLDTRIRPTVQEDGGDIVFMGY--EGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIP 242

Query: 180 EVKSVEQELDAEDEV 194
           EV+SVEQ  D  D +
Sbjct: 243 EVESVEQVFDEADRM 257

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila melanogaster (taxid: 7227)

>sp|B3MRT7|NFU1_DROAN NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila ananassae GN=GF20932 PE=3 SV=1

 Score =  234 bits (597), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 145/196 (73%), Gaps = 5/196 (2%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSD 59
           MFIQTQ TPNP SL F PG  V+  G+  DFP+   A  SPLAK L+ V+G+  VFFG+D
Sbjct: 67  MFIQTQDTPNPESLKFLPGVEVLGKGNTHDFPSGTTAHGSPLAKLLFRVEGVRAVFFGAD 126

Query: 60  FITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
           FIT++K E   W L+KPE+FA IMDF++SG P+  +S   A  DT I EDD ETV MIKE
Sbjct: 127 FITISKEEGAEWSLIKPEVFAVIMDFFASGLPILHESTPNA--DTEILEDDDETVMMIKE 184

Query: 120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
           LL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+P
Sbjct: 185 LLDTRIRPTVQEDGGDIVFMGY--ENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIP 242

Query: 180 EVKSVEQELDAEDEVA 195
           EV+SVEQ  DA D++A
Sbjct: 243 EVESVEQVFDAVDKMA 258

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila ananassae (taxid: 7217)

>sp|B4JWR9|NFU1_DROGR NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila grimshawi GN=GH17809 PE=3 SV=1

 Score =  234 bits (597), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 146/197 (74%), Gaps = 5/197 (2%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSD 59
           MFIQTQ TPNP SL F PG  V+  G+  DFP+A AA  SPLAK L+ V+G+  VFFGSD
Sbjct: 79  MFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSATAAHCSPLAKLLFRVEGVRAVFFGSD 138

Query: 60  FITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
           FIT++K E+  W L+KPE+FA IMDF++SG P+  ++   A  DT I EDD ETV MIKE
Sbjct: 139 FITISKEENGEWGLIKPEVFAVIMDFFASGLPILHEARPNA--DTEILEDDDETVMMIKE 196

Query: 120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
           LL+TRIRP VQ+DGGDI +  +  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+P
Sbjct: 197 LLDTRIRPTVQEDGGDIVFISY--EKGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIP 254

Query: 180 EVKSVEQELDAEDEVAT 196
           EV+SVEQ  D  D+VA 
Sbjct: 255 EVESVEQVFDEVDKVAN 271

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila grimshawi (taxid: 7222)

>sp|Q9QZ23|NFU1_MOUSE NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Mus musculus GN=Nfu1 PE=1 SV=2

 Score =  233 bits (595), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 147/193 (76%), Gaps = 4/193 (2%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG DF
Sbjct: 57  MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116

Query: 61  ITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
           ITVTK +E+  W+LLKP+I+A IMDF++SG PL +  ET      A +E+D E VAMIKE
Sbjct: 117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPL-VTEETPPPPGEAGSEEDDEVVAMIKE 175

Query: 120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
           LL+TRIRP VQ+DGGD+ YRGF  E G V+L++QG+C+ CPSS +TLKSGI+NML  Y+P
Sbjct: 176 LLDTRIRPTVQEDGGDVIYRGF--EDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIP 233

Query: 180 EVKSVEQELDAED 192
           EV+ VEQ +D ++
Sbjct: 234 EVEGVEQVMDDDE 246

Iron-sulfur cluster scaffold protein which can assemble [4Fe-2S] clusters and deliver them to target proteins.

Mus musculus (taxid: 10090)

>sp|B4PZ52|NFU1_DROYA NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila yakuba GN=GE15286 PE=3 SV=1

 Score =  233 bits (594), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 115/196 (58%), Positives = 144/196 (73%), Gaps = 5/196 (2%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSD 59
           MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+D
Sbjct: 67  MFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGAD 126

Query: 60  FITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
           F+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKE
Sbjct: 127 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPNA--DTEILEDDDETVMMIKE 184

Query: 120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
           LL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+P
Sbjct: 185 LLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIP 242

Query: 180 EVKSVEQELDAEDEVA 195
           EV+SVEQ  D  D + 
Sbjct: 243 EVESVEQVFDEADRMV 258

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila yakuba (taxid: 7245)

>sp|B4IMF6|NFU1_DROSE NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila sechellia GN=GM13534 PE=3 SV=1

 Score =  233 bits (594), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 116/195 (59%), Positives = 144/195 (73%), Gaps = 5/195 (2%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSD 59
           MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+D
Sbjct: 67  MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGAD 126

Query: 60  FITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
           FIT++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKE
Sbjct: 127 FITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKE 184

Query: 120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
           LL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+P
Sbjct: 185 LLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIP 242

Query: 180 EVKSVEQELDAEDEV 194
           EV+SVEQ  D  D +
Sbjct: 243 EVESVEQVFDEADRM 257

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila sechellia (taxid: 7238)

>sp|B3NYF7|NFU1_DROER NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila erecta GN=GG17526 PE=3 SV=1

 Score =  233 bits (594), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 115/195 (58%), Positives = 144/195 (73%), Gaps = 5/195 (2%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSD 59
           MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+D
Sbjct: 67  MFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGAD 126

Query: 60  FITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
           F+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKE
Sbjct: 127 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPNA--DTEILEDDDETVMMIKE 184

Query: 120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
           LL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+P
Sbjct: 185 LLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIP 242

Query: 180 EVKSVEQELDAEDEV 194
           EV+SVEQ  D  D +
Sbjct: 243 EVESVEQVFDEADRM 257

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila erecta (taxid: 7220)

>sp|B4NE93|NFU1_DROWI NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila willistoni GN=GK25604 PE=3 SV=1

 Score =  232 bits (592), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 144/196 (73%), Gaps = 5/196 (2%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSD 59
           MFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFGSD
Sbjct: 68  MFIQTQDTPNPESLKFLPGVEVLGKGNTYDFPSVAAAHCSPLAKLLFRVEGVRSVFFGSD 127

Query: 60  FITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
           FIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I EDD ETV MIKE
Sbjct: 128 FITISKEEAAEWGLIKPEVFAVIMDFFASGLPILHEARNNA--DTEILEDDDETVMMIKE 185

Query: 120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
           LL+TRIRP VQ+DGGDI +  +D   G VKL+MQG+CS CPSS VTLK+G++NML  Y+P
Sbjct: 186 LLDTRIRPTVQEDGGDIVFMSYD--NGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIP 243

Query: 180 EVKSVEQELDAEDEVA 195
           EV+SVEQ  D  D++A
Sbjct: 244 EVESVEQVFDEADKMA 259

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila willistoni (taxid: 7260)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
255568026	271	HIRA-interacting protein, putative [Rici	1.0	0.745	0.910	1e-105
296087967	202	unnamed protein product [Vitis vinifera]	1.0	1.0	0.891	1e-103
225464130	271	PREDICTED: nifU-like protein 4, mitochon	1.0	0.745	0.891	1e-103
224110188	279	predicted protein [Populus trichocarpa]	1.0	0.724	0.866	1e-101
18402817	283	NifU-like protein 4 [Arabidopsis thalian	1.0	0.713	0.851	1e-100
356576863	267	PREDICTED: nifU-like protein 4, mitochon	1.0	0.756	0.846	2e-99
209484091	243	iron-sulfer cluster scaffold protein NFU	0.990	0.823	0.86	3e-99
449446277	273	PREDICTED: nifU-like protein 4, mitochon	1.0	0.739	0.861	7e-99
357134577	268	PREDICTED: nifU-like protein 4, mitochon	0.995	0.75	0.856	2e-97
125550903	272	hypothetical protein OsI_18522 [Oryza sa	0.995	0.738	0.856	2e-97

>gi|255568026|ref|XP_002524990.1| HIRA-interacting protein, putative [Ricinus communis] gi|223535734|gb|EEF37397.1| HIRA-interacting protein, putative [Ricinus communis]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/202 (91%), Positives = 191/202 (94%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNPSSLMFYPGKPVMEVGS DFPNARAA+NSPLAKSLYG+DG TRVFFGSDF
Sbjct: 70  MFIQTQSTPNPSSLMFYPGKPVMEVGSVDFPNARAALNSPLAKSLYGIDGTTRVFFGSDF 129

Query: 61  ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
           ITVTKS+D SWDLLKPEIFAAIMDFYSSGQPLFLDSE AA+KDTAI++DDSETVAMIKEL
Sbjct: 130 ITVTKSDDVSWDLLKPEIFAAIMDFYSSGQPLFLDSEIAASKDTAIHKDDSETVAMIKEL 189

Query: 121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
           LETRIRPAVQDDGGDIEYRGFDPETG VKL+MQGACSGCPSSSVTLKSGIENMLMHYV E
Sbjct: 190 LETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVSE 249

Query: 181 VKSVEQELDAEDEVATLAGQME 202
           VK VEQELDAEDE A LAGQ E
Sbjct: 250 VKGVEQELDAEDEDAALAGQTE 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087967|emb|CBI35250.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/202 (89%), Positives = 192/202 (95%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNP+SLMFYPGKPVMEVGSADFPN+R+AM+SPLAKSLYG+DGITRVFFGSDF
Sbjct: 1   MFIQTQSTPNPASLMFYPGKPVMEVGSADFPNSRSAMSSPLAKSLYGIDGITRVFFGSDF 60

Query: 61  ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
           ITVTKS+D SWD +KPEIFAAIMDFYSSG+PLFLDS TAAA DTAI+EDDSETVAMIKEL
Sbjct: 61  ITVTKSDDASWDFIKPEIFAAIMDFYSSGKPLFLDSNTAAAMDTAIHEDDSETVAMIKEL 120

Query: 121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
           LETRIRPAVQDDGGDIEYRGFDPETG VKL+MQGACSGCPSSSVTLKSGIENMLMHYVPE
Sbjct: 121 LETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPE 180

Query: 181 VKSVEQELDAEDEVATLAGQME 202
           VK VEQELDAEDE   L+GQM+
Sbjct: 181 VKGVEQELDAEDEDVALSGQMD 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464130|ref|XP_002264979.1| PREDICTED: nifU-like protein 4, mitochondrial-like [Vitis vinifera]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/202 (89%), Positives = 192/202 (95%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNP+SLMFYPGKPVMEVGSADFPN+R+AM+SPLAKSLYG+DGITRVFFGSDF
Sbjct: 70  MFIQTQSTPNPASLMFYPGKPVMEVGSADFPNSRSAMSSPLAKSLYGIDGITRVFFGSDF 129

Query: 61  ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
           ITVTKS+D SWD +KPEIFAAIMDFYSSG+PLFLDS TAAA DTAI+EDDSETVAMIKEL
Sbjct: 130 ITVTKSDDASWDFIKPEIFAAIMDFYSSGKPLFLDSNTAAAMDTAIHEDDSETVAMIKEL 189

Query: 121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
           LETRIRPAVQDDGGDIEYRGFDPETG VKL+MQGACSGCPSSSVTLKSGIENMLMHYVPE
Sbjct: 190 LETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPE 249

Query: 181 VKSVEQELDAEDEVATLAGQME 202
           VK VEQELDAEDE   L+GQM+
Sbjct: 250 VKGVEQELDAEDEDVALSGQMD 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110188|ref|XP_002315442.1| predicted protein [Populus trichocarpa] gi|222864482|gb|EEF01613.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/202 (86%), Positives = 190/202 (94%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNPSSLMFYPGKPVM+VGSADFPNAR+AMNSPLAK++YG+DGI RVFFG DF
Sbjct: 78  MFIQTQSTPNPSSLMFYPGKPVMDVGSADFPNARSAMNSPLAKAIYGIDGINRVFFGPDF 137

Query: 61  ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
           IT+TKS+D +W+ LKPEIFAAIMDFYSSG+PLFLDS+TAAAKDTAI+EDDSETVAMIKEL
Sbjct: 138 ITITKSDDATWEFLKPEIFAAIMDFYSSGEPLFLDSQTAAAKDTAISEDDSETVAMIKEL 197

Query: 121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
           LETRIRPAVQDDGGDIEY+GFD ETG VKL+MQGACSGCPSSSVTLKSGIENMLMHYVPE
Sbjct: 198 LETRIRPAVQDDGGDIEYQGFDEETGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPE 257

Query: 181 VKSVEQELDAEDEVATLAGQME 202
           VK VEQELDAED+ A L  QME
Sbjct: 258 VKGVEQELDAEDDEAALTSQME 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402817|ref|NP_566673.1| NifU-like protein 4 [Arabidopsis thaliana] gi|75273382|sp|Q9LIG6.1|NIFU4_ARATH RecName: Full=NifU-like protein 4, mitochondrial; Short=AtNfu-III; Short=AtNfu4; Flags: Precursor gi|13899085|gb|AAK48964.1|AF370537_1 Unknown protein [Arabidopsis thaliana] gi|9294004|dbj|BAB01907.1| unnamed protein product [Arabidopsis thaliana] gi|18377516|gb|AAL66924.1| unknown protein [Arabidopsis thaliana] gi|28207822|emb|CAD55561.1| NFU4 protein [Arabidopsis thaliana] gi|332642927|gb|AEE76448.1| NifU-like protein 4 [Arabidopsis thaliana]

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/202 (85%), Positives = 186/202 (92%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNPSSLMFYPGKPVMEVGSADFPN R+A+ SPLAKS+Y +DG+ RVFFGSDF
Sbjct: 80  MFIQTQSTPNPSSLMFYPGKPVMEVGSADFPNVRSALGSPLAKSIYSIDGVVRVFFGSDF 139

Query: 61  ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
           +TVTKS+D SWD+LKPEIFAA+MDFYSSGQPLFLDS+ AAAKDTAI+EDDSETVAMIKEL
Sbjct: 140 VTVTKSDDVSWDILKPEIFAAVMDFYSSGQPLFLDSQAAAAKDTAISEDDSETVAMIKEL 199

Query: 121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
           LETRIRPAVQDDGGDIEY GFDPE+G VKLRMQGACSGCPSSSVTLKSGIENMLMHYV E
Sbjct: 200 LETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSE 259

Query: 181 VKSVEQELDAEDEVATLAGQME 202
           VK VEQE D EDE  TL+G+M 
Sbjct: 260 VKGVEQEFDGEDEEGTLSGEMR 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576863|ref|XP_003556549.1| PREDICTED: nifU-like protein 4, mitochondrial-like [Glycine max]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 171/202 (84%), Positives = 190/202 (94%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQPTPNPSSLMFYPGKPVMEVGS+DFPN R+AMNSPLAKSL+ +DG+TRVFFGSDF
Sbjct: 66  MFIQTQPTPNPSSLMFYPGKPVMEVGSSDFPNPRSAMNSPLAKSLFAIDGVTRVFFGSDF 125

Query: 61  ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
           +TVTKSE+ +W+ LKPE+FAAIMDFYSS QPLFLDS+ AAA DTAI++DDSETVAMIKEL
Sbjct: 126 VTVTKSEEAAWEFLKPEVFAAIMDFYSSAQPLFLDSQAAAAMDTAIHQDDSETVAMIKEL 185

Query: 121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
           LETRIRPAVQDDGGDIEYRGFD +TG VKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE
Sbjct: 186 LETRIRPAVQDDGGDIEYRGFDLDTGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 245

Query: 181 VKSVEQELDAEDEVATLAGQME 202
           VK VEQELDAED+ A L+G+++
Sbjct: 246 VKGVEQELDAEDDGAALSGEIK 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209484091|gb|ACI47520.1| iron-sulfer cluster scaffold protein NFU4 [Eucalyptus grandis]

 Score =  366 bits (939), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 172/200 (86%), Positives = 188/200 (94%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNP SLMFYPGKPVMEVGSADFPNAR +MNS LA++L+G+DG+TRVF+GSDF
Sbjct: 40  MFIQTQSTPNPMSLMFYPGKPVMEVGSADFPNARTSMNSALARALFGIDGVTRVFYGSDF 99

Query: 61  ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
           +TVTKS+D SWDLLKPEIFAAIMDFYSSGQPLFLDS+TA+A DTAI+EDDSETVAMIKEL
Sbjct: 100 VTVTKSDDASWDLLKPEIFAAIMDFYSSGQPLFLDSQTASAMDTAIHEDDSETVAMIKEL 159

Query: 121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
           LETRIRPAVQDDGGDIEYRGFD +TG VKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE
Sbjct: 160 LETRIRPAVQDDGGDIEYRGFDLDTGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 219

Query: 181 VKSVEQELDAEDEVATLAGQ 200
           VK+VEQ++DAEDE   L GQ
Sbjct: 220 VKAVEQDMDAEDEEQALTGQ 239

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446277|ref|XP_004140898.1| PREDICTED: nifU-like protein 4, mitochondrial-like [Cucumis sativus] gi|449494166|ref|XP_004159467.1| PREDICTED: nifU-like protein 4, mitochondrial-like [Cucumis sativus]

 Score =  365 bits (936), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 174/202 (86%), Positives = 183/202 (90%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFI+TQ TPNPSSLMFYPGKPVMEVGSADFPNAR+AMNSPLAK+LYGVDG+ RVFFGSDF
Sbjct: 72  MFIETQSTPNPSSLMFYPGKPVMEVGSADFPNARSAMNSPLAKALYGVDGVVRVFFGSDF 131

Query: 61  ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
           +TVTKS D SWD LKPEIFAAIMDFYSSGQPLFLDS+TAAA DTAI EDDSETVAMIKEL
Sbjct: 132 VTVTKSNDASWDFLKPEIFAAIMDFYSSGQPLFLDSKTAAAMDTAIKEDDSETVAMIKEL 191

Query: 121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
           LETRIRPAVQDDGGDIEYRG++ ETG V LRMQGACSGCPSSSVTLKSGIENMLMHYVPE
Sbjct: 192 LETRIRPAVQDDGGDIEYRGYNEETGIVTLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 251

Query: 181 VKSVEQELDAEDEVATLAGQME 202
           VK VEQE D E+E      QME
Sbjct: 252 VKGVEQEFDVEEEDVKSTSQME 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357134577|ref|XP_003568893.1| PREDICTED: nifU-like protein 4, mitochondrial-like [Brachypodium distachyon]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 173/202 (85%), Positives = 185/202 (91%), Gaps = 1/202 (0%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNP SLMF+PGKPVMEVGS+DFPN R AM SPLAK+L+ +DG+TRVFFGSDF
Sbjct: 68  MFIQTQSTPNPQSLMFHPGKPVMEVGSSDFPNVRTAMTSPLAKALFAIDGVTRVFFGSDF 127

Query: 61  ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
           +TVTKS++TSWD LKPEIFAAIMDFYSSGQPLFLDS TAAA DTAI+EDDSE VAMIKEL
Sbjct: 128 VTVTKSDETSWDYLKPEIFAAIMDFYSSGQPLFLDSNTAAAMDTAIHEDDSEIVAMIKEL 187

Query: 121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
           LETRIRPAVQDDGGDIEYRGFDPETG VKL+MQGACSGCPSSSVTLKSGIENMLMHYVPE
Sbjct: 188 LETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPE 247

Query: 181 VKSVEQELDAEDEVATLAGQME 202
           VK VEQE D  DE A LAGQ+E
Sbjct: 248 VKGVEQEFDG-DEEAELAGQVE 268

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125550903|gb|EAY96612.1| hypothetical protein OsI_18522 [Oryza sativa Indica Group]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 173/202 (85%), Positives = 185/202 (91%), Gaps = 1/202 (0%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNP SLMFYPGKPVMEVGS+DFPNAR AM SPLAK+L+ +DG+TRVFFGSDF
Sbjct: 72  MFIQTQSTPNPQSLMFYPGKPVMEVGSSDFPNARTAMTSPLAKALFAIDGVTRVFFGSDF 131

Query: 61  ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
           +TVTKSE+TSWD LKPE+FAAIMDFYSSGQ LFLDS TAA+ DTAI+EDDSE VAMIKEL
Sbjct: 132 VTVTKSEETSWDYLKPEVFAAIMDFYSSGQSLFLDSSTAASMDTAIHEDDSEIVAMIKEL 191

Query: 121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
           LETRIRPAVQDDGGDIEYRGFDPETG VKL+MQGACSGCPSSSVTLKSGIENMLMHYVPE
Sbjct: 192 LETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPE 251

Query: 181 VKSVEQELDAEDEVATLAGQME 202
           VK VEQELD  DE A L GQ+E
Sbjct: 252 VKGVEQELDG-DEEAELTGQLE 272

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2088781	283	NFU4 "NFU domain protein 4" [A	0.995	0.710	0.855	1.3e-91
TAIR|locus:2008311	275	NFU5 "NFU domain protein 5" [A	0.995	0.730	0.801	3.3e-86
MGI|MGI:1913290	255	Nfu1 "NFU1 iron-sulfur cluster	0.935	0.741	0.597	4e-58
FB|FBgn0052500	283	CG32500 [Drosophila melanogast	0.940	0.671	0.594	8.4e-58
FB|FBgn0052857	283	CG32857 [Drosophila melanogast	0.940	0.671	0.594	8.4e-58
FB|FBgn0053502	283	CG33502 [Drosophila melanogast	0.940	0.671	0.594	8.4e-58
UNIPROTKB|J9P3M4	252	NFU1 "Uncharacterized protein"	0.930	0.746	0.587	1.4e-57
UNIPROTKB|B3MRT7	286	GF20932 "NFU1 iron-sulfur clus	0.945	0.667	0.596	1.4e-57
UNIPROTKB|B4IMF6	283	GM13534 "NFU1 iron-sulfur clus	0.940	0.671	0.594	1.4e-57
RGD|1307823	253	Nfu1 "NFU1 iron-sulfur cluster	0.925	0.739	0.595	1.4e-57

TAIR|locus:2088781 NFU4 "NFU domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 172/201 (85%), Positives = 186/201 (92%)

Query:     1 MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
             MFIQTQ TPNPSSLMFYPGKPVMEVGSADFPN R+A+ SPLAKS+Y +DG+ RVFFGSDF
Sbjct:    80 MFIQTQSTPNPSSLMFYPGKPVMEVGSADFPNVRSALGSPLAKSIYSIDGVVRVFFGSDF 139

Query:    61 ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
             +TVTKS+D SWD+LKPEIFAA+MDFYSSGQPLFLDS+ AAAKDTAI+EDDSETVAMIKEL
Sbjct:   140 VTVTKSDDVSWDILKPEIFAAVMDFYSSGQPLFLDSQAAAAKDTAISEDDSETVAMIKEL 199

Query:   121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
             LETRIRPAVQDDGGDIEY GFDPE+G VKLRMQGACSGCPSSSVTLKSGIENMLMHYV E
Sbjct:   200 LETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSE 259

Query:   181 VKSVEQELDAEDEVATLAGQM 201
             VK VEQE D EDE  TL+G+M
Sbjct:   260 VKGVEQEFDGEDEEGTLSGEM 280

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;ISS;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=TAS

TAIR|locus:2008311 NFU5 "NFU domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 162/202 (80%), Positives = 183/202 (90%)

Query:     1 MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
             MFIQTQ TPNPSSLMF PGKPVME+GSADFPN+R+AM+SPLAK+++ +DG+ RVF+GSDF
Sbjct:    75 MFIQTQSTPNPSSLMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGVVRVFYGSDF 134

Query:    61 ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 120
             +TVTKS+D +WD+LKP+IFA +MDFYSSGQPLFLDS+  AAKDTAI+EDDSETVAMIKEL
Sbjct:   135 VTVTKSDDVTWDILKPDIFAVVMDFYSSGQPLFLDSQATAAKDTAIHEDDSETVAMIKEL 194

Query:   121 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 180
             LETRIRP+VQDDGGDIEY GFD ETG VKLRMQGACSGCPSSSVTLKSGIENMLMHYV E
Sbjct:   195 LETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSE 254

Query:   181 VKSVEQELDAEDEVATLAGQME 202
             VK VEQE D E+E  T +G ME
Sbjct:   255 VKGVEQEFDGEEE-GTSSGPME 275

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;ISS;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=TAS

GO:0005524 "ATP binding" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

MGI|MGI:1913290 Nfu1 "NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 116/194 (59%), Positives = 148/194 (76%)

Query:     1 MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
             MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG DF
Sbjct:    57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116

Query:    61 ITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
             ITVTK +E+  W+LLKP+I+A IMDF++SG PL  + ET      A +E+D E VAMIKE
Sbjct:   117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE-ETPPPPGEAGSEEDDEVVAMIKE 175

Query:   120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
             LL+TRIRP VQ+DGGD+ YRGF  E G V+L++QG+C+ CPSS +TLKSGI+NML  Y+P
Sbjct:   176 LLDTRIRPTVQEDGGDVIYRGF--EDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIP 233

Query:   180 EVKSVEQELDAEDE 193
             EV+ VEQ +D +DE
Sbjct:   234 EVEGVEQVMD-DDE 246

GO:0005506 "iron ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0016226 "iron-sulfur cluster assembly" evidence=ISO

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISO

FB|FBgn0052500 CG32500 [Drosophila melanogaster (taxid:7227)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 116/195 (59%), Positives = 144/195 (73%)

Query:     1 MFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSD 59
             MFIQTQ TPNP SL F PG  V+  G+  DFPN   A NSPLAK L+ V+G+  VFFG+D
Sbjct:    67 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGAD 126

Query:    60 FITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
             F+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKE
Sbjct:   127 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKE 184

Query:   120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
             LL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+P
Sbjct:   185 LLDTRIRPTVQEDGGDIVFMGY--EGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIP 242

Query:   180 EVKSVEQELDAEDEV 194
             EV+SVEQ  D  D +
Sbjct:   243 EVESVEQVFDEADRM 257

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0052857 CG32857 [Drosophila melanogaster (taxid:7227)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 116/195 (59%), Positives = 144/195 (73%)

Query:     1 MFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSD 59
             MFIQTQ TPNP SL F PG  V+  G+  DFPN   A NSPLAK L+ V+G+  VFFG+D
Sbjct:    67 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGAD 126

Query:    60 FITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
             F+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKE
Sbjct:   127 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKE 184

Query:   120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
             LL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+P
Sbjct:   185 LLDTRIRPTVQEDGGDIVFMGY--EGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIP 242

Query:   180 EVKSVEQELDAEDEV 194
             EV+SVEQ  D  D +
Sbjct:   243 EVESVEQVFDEADRM 257

GO:0008026 "ATP-dependent helicase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

FB|FBgn0053502 CG33502 [Drosophila melanogaster (taxid:7227)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 116/195 (59%), Positives = 144/195 (73%)

Query:     1 MFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSD 59
             MFIQTQ TPNP SL F PG  V+  G+  DFPN   A NSPLAK L+ V+G+  VFFG+D
Sbjct:    67 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGAD 126

Query:    60 FITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
             F+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKE
Sbjct:   127 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKE 184

Query:   120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
             LL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+P
Sbjct:   185 LLDTRIRPTVQEDGGDIVFMGY--EGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIP 242

Query:   180 EVKSVEQELDAEDEV 194
             EV+SVEQ  D  D +
Sbjct:   243 EVESVEQVFDEADRM 257

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

UNIPROTKB|J9P3M4 NFU1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 114/194 (58%), Positives = 150/194 (77%)

Query:     1 MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
             MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG DF
Sbjct:    57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116

Query:    61 ITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
             ITVTK SE+  W+LLKP+I+A IMDF++SG PL  + ET++ +  A +E+D E VAMIKE
Sbjct:   117 ITVTKESEELDWNLLKPDIYATIMDFFASGLPLVTE-ETSSGE--AGSEEDDEVVAMIKE 173

Query:   120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
             LL+TRIRP VQ+DGGD+ Y+GF  E G V+L++QG+C+ CPSS +TLK+GI+NML  Y+P
Sbjct:   174 LLDTRIRPTVQEDGGDVIYKGF--EDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIP 231

Query:   180 EVKSVEQELDAEDE 193
             EV+ VEQ +D E +
Sbjct:   232 EVEGVEQVMDDESD 245

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|B3MRT7 GF20932 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila ananassae (taxid:7217)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 117/196 (59%), Positives = 145/196 (73%)

Query:     1 MFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSD 59
             MFIQTQ TPNP SL F PG  V+  G+  DFP+   A  SPLAK L+ V+G+  VFFG+D
Sbjct:    67 MFIQTQDTPNPESLKFLPGVEVLGKGNTHDFPSGTTAHGSPLAKLLFRVEGVRAVFFGAD 126

Query:    60 FITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
             FIT++K E   W L+KPE+FA IMDF++SG P+  +S   A  DT I EDD ETV MIKE
Sbjct:   127 FITISKEEGAEWSLIKPEVFAVIMDFFASGLPILHESTPNA--DTEILEDDDETVMMIKE 184

Query:   120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
             LL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+P
Sbjct:   185 LLDTRIRPTVQEDGGDIVFMGY--ENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIP 242

Query:   180 EVKSVEQELDAEDEVA 195
             EV+SVEQ  DA D++A
Sbjct:   243 EVESVEQVFDAVDKMA 258

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4IMF6 GM13534 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila sechellia (taxid:7238)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 116/195 (59%), Positives = 144/195 (73%)

Query:     1 MFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSD 59
             MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+D
Sbjct:    67 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGAD 126

Query:    60 FITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
             FIT++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKE
Sbjct:   127 FITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKE 184

Query:   120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
             LL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+P
Sbjct:   185 LLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIP 242

Query:   180 EVKSVEQELDAEDEV 194
             EV+SVEQ  D  D +
Sbjct:   243 EVESVEQVFDEADRM 257

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1307823 Nfu1 "NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 115/193 (59%), Positives = 148/193 (76%)

Query:     1 MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
             MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG DF
Sbjct:    57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116

Query:    61 ITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKE 119
             ITVTK +E+  W+LLKP+I+A IMDF++SG PL  + ET   +  A +E+D E VAMIKE
Sbjct:   117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE-ETPPGE--AGSEEDDEVVAMIKE 173

Query:   120 LLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP 179
             LL+TRIRP VQ+DGGD+ YRGF  E G V+L++QG+C+ CPSS +TLKSGI+NML  Y+P
Sbjct:   174 LLDTRIRPTVQEDGGDVIYRGF--EDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIP 231

Query:   180 EVKSVEQELDAED 192
             EV+ VEQ +D E+
Sbjct:   232 EVEGVEQVMDDEE 244

GO:0005506 "iron ion binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;ISO

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9QZ23	NFU1_MOUSE	No assigned EC number	0.5906	0.9356	0.7411	yes	no
Q9LIG6	NIFU4_ARATH	No assigned EC number	0.8514	1.0	0.7137	yes	no
Q9UMS0	NFU1_HUMAN	No assigned EC number	0.5824	0.9306	0.7401	yes	no
Q8SY96	NFU1_DROME	No assigned EC number	0.5948	0.9405	0.6713	yes	no
Q9UUB8	YH9J_SCHPO	No assigned EC number	0.5076	0.9653	0.75	yes	no
B5DKJ8	NFU1_DROPS	No assigned EC number	0.5867	0.9455	0.6678	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam08712	87	pfam08712, Nfu_N, Scaffold protein Nfu/NifU N term	4e-46
smart00932	88	smart00932, Nfu_N, Scaffold protein Nfu/NifU N ter	1e-40
COG0694	93	COG0694, COG0694, Thioredoxin-like proteins and do	3e-37
pfam01106	68	pfam01106, NifU, NifU-like domain	4e-26
TIGR02000	290	TIGR02000, NifU_proper, Fe-S cluster assembly prot	2e-07
TIGR03341	190	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI	2e-06
PRK11190	192	PRK11190, PRK11190, Fe/S biogenesis protein NfuA;	0.003

>gnl|CDD|204038 pfam08712, Nfu_N, Scaffold protein Nfu/NifU N terminal

 Score =  146 bits (372), Expect = 4e-46
 Identities = 47/87 (54%), Positives = 62/87 (71%)

Query: 3  IQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFIT 62
          IQT+ TPNP++L F PGK V+  G+ +F NA  A  SPLA++L+ + G+  VFFG DFIT
Sbjct: 1  IQTESTPNPNTLKFLPGKEVLPEGTFEFKNADEAEASPLAQALFKIPGVKSVFFGDDFIT 60

Query: 63 VTKSEDTSWDLLKPEIFAAIMDFYSSG 89
          VTK++D  WD LKPE+  AIM+   SG
Sbjct: 61 VTKADDADWDDLKPEVLEAIMEHLESG 87

This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters. Length = 87

>gnl|CDD|214919 smart00932, Nfu_N, Scaffold protein Nfu/NifU N terminal

 Score =  132 bits (335), Expect = 1e-40
 Identities = 47/88 (53%), Positives = 63/88 (71%), Gaps = 1/88 (1%)

Query: 3  IQTQPTPNPSSLMFYPGKPVMEVGSADFPNAR-AAMNSPLAKSLYGVDGITRVFFGSDFI 61
          IQT+PTPNP++L F PG+ V+  GSA+F +A  AA  SPLA+ L+ + G+  VFFG DFI
Sbjct: 1  IQTEPTPNPNTLKFLPGEFVLPGGSAEFKSADEAAEASPLAQKLFEIPGVKSVFFGPDFI 60

Query: 62 TVTKSEDTSWDLLKPEIFAAIMDFYSSG 89
          TVTK  D  W+ LKPE+ + IM+ + SG
Sbjct: 61 TVTKYPDVDWEDLKPEVLSVIMEHFESG 88

This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters. Length = 88

>gnl|CDD|223766 COG0694, COG0694, Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

 Score =  124 bits (314), Expect = 3e-37
 Identities = 44/88 (50%), Positives = 58/88 (65%)

Query: 108 EDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLK 167
           E D+E +  ++E+L+ +IRP +  DGGD+E  G D E G V LR+ GACSGCPSS+VTLK
Sbjct: 5   ETDAELLERVEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLK 64

Query: 168 SGIENMLMHYVPEVKSVEQELDAEDEVA 195
           +GIE  L   +PEVK VEQ  +      
Sbjct: 65  NGIERQLKEEIPEVKEVEQVTEHARGEH 92

Length = 93

>gnl|CDD|144628 pfam01106, NifU, NifU-like domain

 Score = 95.0 bits (237), Expect = 4e-26
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 117 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 176
           I+E+++  IRP +Q DGGDIE    D     VK+R+QGAC GC SS++TLK GIE  L  
Sbjct: 1   IEEVIDE-IRPMLQRDGGDIELVDVDG--DIVKVRLQGACGGCMSSTMTLKGGIERKLRE 57

Query: 177 YVPEVKSVEQE 187
            + E   V   
Sbjct: 58  RLGESLRVIPV 68

This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown. Length = 68

>gnl|CDD|233679 TIGR02000, NifU_proper, Fe-S cluster assembly protein NifU

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 114 VAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENM 173
           + +I+++LE  +RP +Q DGGD+E   +D +   V + + GACSGC  S++TLK GI+  
Sbjct: 221 IQLIQKVLEE-VRPVLQADGGDVEL--YDVDGKIVYVVLTGACSGCSMSTMTLK-GIQQR 276

Query: 174 LMHYVPEVKSVE 185
           L   + E   VE
Sbjct: 277 LRERLGEFVVVE 288

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 290

>gnl|CDD|132384 TIGR03341, YhgI_GntY, IscR-regulated protein YhgI

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 109 DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKS 168
           DD+     I  +L++ I P +   GG +       + G   L+  G C+GC    VTLK 
Sbjct: 102 DDAPLEERINYVLQSEINPQLASHGGKVTLVEITDD-GVAVLQFGGGCNGCSMVDVTLKD 160

Query: 169 GIENMLMHYVPEVKSVEQELDAED 192
           G+E  L+   PE+K V    D   
Sbjct: 161 GVEKTLLERFPELKGVRDATDHTR 184

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 190

>gnl|CDD|183027 PRK11190, PRK11190, Fe/S biogenesis protein NfuA; Provisional

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 109 DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKS 168
           DD+  +  ++ +L+++I P +   GG +       E G   L+  G C+GC    VTLK 
Sbjct: 103 DDAPLMERVEYVLQSQINPQLAGHGGRVSLMEIT-EDGYAILQFGGGCNGCSMVDVTLKE 161

Query: 169 GIENMLMHYVP-EVKSV 184
           GIE  L++  P E+K V
Sbjct: 162 GIEKQLLNEFPGELKGV 178

Length = 192

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG2358	213	consensus NifU-like domain-containing proteins [Po	100.0
PF08712	87	Nfu_N: Scaffold protein Nfu/NifU N terminal; Inter	100.0
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	99.95
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	99.92
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.92
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.92
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	99.82
KOG2358	213	consensus NifU-like domain-containing proteins [Po	98.14
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	96.82
COG2151	111	PaaD Predicted metal-sulfur cluster biosynthetic e	94.65
TIGR02945	99	SUF_assoc FeS assembly SUF system protein. Members	94.3
TIGR03406	174	FeS_long_SufT probable FeS assembly SUF system pro	91.22
PF02061	45	Lambda_CIII: Lambda Phage CIII; InterPro: IPR01305	81.78

>KOG2358 consensus NifU-like domain-containing proteins [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-46  Score=307.10  Aligned_cols=200  Identities=52%  Similarity=0.772  Sum_probs=182.6

Q ss_pred             CceeccCCCCCCceeeecCcccC-CCcceecCChhhhcCcHHHHhccCCC-CeeEEEEeCCeEEEEecCC-CChhhhhHH
Q 028908            1 MFIQTQPTPNPSSLMFYPGKPVM-EVGSADFPNARAAMNSPLAKSLYGVD-GITRVFFGSDFITVTKSED-TSWDLLKPE   77 (202)
Q Consensus         1 mfI~~e~TPNP~~lKF~~~~~~~-~~~~~~f~~~~~a~~spLa~~Lf~i~-gV~~Vf~~~dfItVtk~~~-~~W~~l~~~   77 (202)
                      ||||++.||||+++||.|+.+++ .+++.+|.+...+..+|||+++|.+. ||+++|+++|||||+|... .+|..|+++
T Consensus        10 ~~i~t~~tPn~~Sl~f~p~~~i~~~~~~~~~~~~~s~~~s~La~s~~~~~~gvv~~~~g~dfvtv~k~~ee~~w~~L~p~   89 (213)
T KOG2358|consen   10 MFIQTQITPNPSSLLFLPGKQILSERGLGDFATPCSAFFSPLAKSILFRDGGVVKVFFGPDFVTVTKLTEENVWSVLDPE   89 (213)
T ss_pred             hcccccCCCCcccccccCCCcccccccccccccccchhhcHHHHHHHhhcCCcEEEEecCCeEEEeccchhhhHhhhchh
Confidence            89999999999999999999998 56788999988888999999999888 8999999999999999887 899999999


Q ss_pred             HHHHHHHHHhcCCCCccchhhhhhhcccCCCCchHHHHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCC
Q 028908           78 IFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACS  157 (202)
Q Consensus        78 I~~~I~d~l~sG~pvv~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~  157 (202)
                      +...+.|++..|.|.+.+.......+. ..+++.++...|+++|++||||.|+.||||++|+++|.+.|+|+++|+|+|.
T Consensus        90 i~~~~sd~g~~g~pli~g~~~~~~~~~-~~e~d~e~t~~ikelietRiRp~i~edggdi~y~g~e~g~g~v~lklqgact  168 (213)
T KOG2358|consen   90 IPSLMSDGGNVGLPLIDGNIVVLKLQG-ACESDPESTMTIKELIETRIRPKIQEDGGDEDYVGFETGLGLVSLKLQGACT  168 (213)
T ss_pred             hHHHHhccccccchhhccchhhhhhcc-cccCChhHHHHHHHHHHHhhhhhhhccCCceeeccccCccchHHHHHhhhhc
Confidence            999999999999999987754332222 3467889999999999999999999999999999999766899999999999


Q ss_pred             CCcchHHHHHHHHHHHHHhhCCCcceEEecCCcchHHHhhccCC
Q 028908          158 GCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQM  201 (202)
Q Consensus       158 gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~~~~~~~~~~~~~  201 (202)
                      +|||+..||++||+++|++|+|+|+.|+++.|.+.+..+++-.+
T Consensus       169 ~cpss~vtlk~Gie~mL~~y~~eVK~v~qv~d~e~~~v~~e~~~  212 (213)
T KOG2358|consen  169 ECPSSLVTLKNGIENMLEIYVPEVKGVIQVPDAEVMTVTVELTK  212 (213)
T ss_pred             cCCcccchhhhhHHHHHHhhcceeeEEEeccCccceEEeeeccc
Confidence            99999999999999999999999999999999999888776543

>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=100.00  E-value=1.3e-33  Score=206.16  Aligned_cols=87  Identities=49%  Similarity=0.877  Sum_probs=71.1

Q ss_pred             eeccCCCCCCceeeecCcccCCCcceecCChhhhcCcHHHHhccCCCCeeEEEEeCCeEEEEecCCCChhhhhHHHHHHH
Q 028908            3 IQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAI   82 (202)
Q Consensus         3 I~~e~TPNP~~lKF~~~~~~~~~~~~~f~~~~~a~~spLa~~Lf~i~gV~~Vf~~~dfItVtk~~~~~W~~l~~~I~~~I   82 (202)
                      ||+|+|||||+|||+++++++++++++|++.++|..||||++||+|+||++||+++|||||+|.++++|++|+++|++.|
T Consensus         1 I~~e~TPNPn~lKF~~~~~~~~~~s~~f~~~~~a~~spLA~~Lf~i~gV~~Vf~~~dfItVtK~~~~~W~~l~~~I~~~I   80 (87)
T PF08712_consen    1 IQIEPTPNPNALKFVLDEPLLPGGSFEFKSAEEASDSPLAQALFAIPGVKSVFIGDDFITVTKNPDADWEDLKPEIREVI   80 (87)
T ss_dssp             EEEEE-SSSSEEEEEESS-SSTS---EEESSS-TTS-HHHHHHHTSTTEEEEEEETTEEEEEE-TTS-HHHHHHHHHHHT
T ss_pred             CEeecCCCcccEEEECCceeecCccEEeCChHHcccCHHHHHhcCCCCEeEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q 028908           83 MDFYSSG   89 (202)
Q Consensus        83 ~d~l~sG   89 (202)
                      ++||.+|
T Consensus        81 ~~~l~sG   87 (87)
T PF08712_consen   81 MEFLESG   87 (87)
T ss_dssp             H------
T ss_pred             hhhccCC
Confidence            9999886

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.9e-28  Score=179.89  Aligned_cols=85  Identities=51%  Similarity=0.837  Sum_probs=80.7

Q ss_pred             CchHHHHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecC
Q 028908          109 DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQEL  188 (202)
Q Consensus       109 ~~~~~~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~  188 (202)
                      .++++.++++.+|+++|||+|++||||++|+++++.+|+|+|||+|||+|||||++|||++||++|++++|++.+|++.+
T Consensus         6 ~~~~~~e~v~~~l~~~irP~l~~dGGdve~~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V~~v~   85 (93)
T COG0694           6 TDAELLERVEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEVEQVT   85 (93)
T ss_pred             ccHHHHHHHHHHHHhccCcceeccCCeEEEEEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceEEEcc
Confidence            46789999999999999999999999999999998789999999999999999999999999999999999999999999


Q ss_pred             CcchH
Q 028908          189 DAEDE  193 (202)
Q Consensus       189 ~~~~~  193 (202)
                      ++...
T Consensus        86 ~~~~~   90 (93)
T COG0694          86 EHARG   90 (93)
T ss_pred             Ccccc
Confidence            87654

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.92  E-value=4.1e-25  Score=154.27  Aligned_cols=68  Identities=56%  Similarity=0.909  Sum_probs=63.6

Q ss_pred             HHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908          117 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  187 (202)
Q Consensus       117 i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~  187 (202)
                      |+++|++ |||+|++||||++|++++  +++|+|||+|+|+|||+|..||+++||++|++++|++..|.++
T Consensus         1 V~~~l~~-IrP~L~~dGGdv~lv~v~--~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V~~v   68 (68)
T PF01106_consen    1 VEEVLEE-IRPYLQSDGGDVELVDVD--DGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRVVPV   68 (68)
T ss_dssp             HHHHHHH-CHHHHHHTTEEEEEEEEE--TTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEEEEC
T ss_pred             CHHHHHH-hChHHHhcCCcEEEEEec--CCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceEEEC
Confidence            6789997 999999999999999999  6799999999999999999999999999999999999999863

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.92  E-value=5.2e-25  Score=181.79  Aligned_cols=84  Identities=31%  Similarity=0.589  Sum_probs=78.4

Q ss_pred             CCchHHHHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908          108 EDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  187 (202)
Q Consensus       108 ~~~~~~~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~  187 (202)
                      .+++++.++|+++|+++|||+|++|||||+|++++. +++|+|||+|+|+|||||..||+++||++|++++|+|++|+..
T Consensus       101 ~~~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~-~~~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~~  179 (190)
T TIGR03341       101 ADDAPLEERINYVLQSEINPQLASHGGKVTLVEITD-DGVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVRDA  179 (190)
T ss_pred             ccchHHHHHHHHHHHhccCHHHHhcCCceEEEEEcC-CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEEEe
Confidence            346679999999999999999999999999999984 5799999999999999999999999999999999999999999


Q ss_pred             CCcch
Q 028908          188 LDAED  192 (202)
Q Consensus       188 ~~~~~  192 (202)
                      +++..
T Consensus       180 ~~~~~  184 (190)
T TIGR03341       180 TDHTR  184 (190)
T ss_pred             cCccc
Confidence            98753

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.92  E-value=7.5e-25  Score=181.03  Aligned_cols=83  Identities=30%  Similarity=0.590  Sum_probs=78.2

Q ss_pred             CchHHHHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCC-CcceEEec
Q 028908          109 DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP-EVKSVEQE  187 (202)
Q Consensus       109 ~~~~~~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~P-ev~~V~~~  187 (202)
                      +++++.++|+++|+++|||+|++|||||+|++++. +|+|+|||+|||+|||||+.||+++||++|++++| +|++|+++
T Consensus       103 ~~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~-~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~~v  181 (192)
T PRK11190        103 DDAPLMERVEYVLQSQINPQLAGHGGRVSLMEITE-DGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVRDL  181 (192)
T ss_pred             ccHHHHHHHHHHHHhccChhHHhcCCcEEEEEEcC-CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEEEe
Confidence            46679999999999999999999999999999984 58999999999999999999999999999999999 99999999


Q ss_pred             CCcch
Q 028908          188 LDAED  192 (202)
Q Consensus       188 ~~~~~  192 (202)
                      +++..
T Consensus       182 ~~~~~  186 (192)
T PRK11190        182 TEHQR  186 (192)
T ss_pred             ccccc
Confidence            98865

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=99.82  E-value=6.7e-20  Score=160.21  Aligned_cols=74  Identities=36%  Similarity=0.637  Sum_probs=68.8

Q ss_pred             chHHHHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908          110 DSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  187 (202)
Q Consensus       110 ~~~~~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~  187 (202)
                      ..+..++|+++| ++|||+|++|||||+|++++  +++|+|||+|+|+|||+|++||++ ||++|++++|++..|+.+
T Consensus       217 ~~~~~~~v~~~l-~~irP~l~~dGGdv~lv~v~--~~~v~v~l~GaC~gC~~s~~Tl~~-Ie~~l~~~~p~~~~V~~v  290 (290)
T TIGR02000       217 NVQRIQLIQKVL-EEVRPVLQADGGDVELYDVD--GKIVYVVLTGACSGCSMSTMTLKG-IQQRLRERLGEFVVVEAV  290 (290)
T ss_pred             hHHHHHHHHHHH-HHhCchHhhcCCcEEEEEEe--CCEEEEEEeeCCCCCcchHHHHHH-HHHHHHHhCCCceEEEeC
Confidence            456778999999 69999999999999999998  689999999999999999999998 999999999999999763

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

>KOG2358 consensus NifU-like domain-containing proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=9.8e-07  Score=73.23  Aligned_cols=76  Identities=28%  Similarity=0.393  Sum_probs=68.3

Q ss_pred             HHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCCcchH
Q 028908          115 AMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDE  193 (202)
Q Consensus       115 ~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~~~~~  193 (202)
                      +....+|+ ..+|++-+|||+.-+--++  +..+.++++|+|..||.+++++|.+|+..||..+||.-.+++.-+.++.
T Consensus        80 e~~w~~L~-p~i~~~~sd~g~~g~pli~--g~~~~~~~~~~~e~d~e~t~~ikelietRiRp~i~edggdi~y~g~e~g  155 (213)
T KOG2358|consen   80 ENVWSVLD-PEIPSLMSDGGNVGLPLID--GNIVVLKLQGACESDPESTMTIKELIETRIRPKIQEDGGDEDYVGFETG  155 (213)
T ss_pred             hhhHhhhc-hhhHHHHhccccccchhhc--cchhhhhhcccccCChhHHHHHHHHHHHhhhhhhhccCCceeeccccCc
Confidence            45567787 7899999999999998887  6789999999999999999999999999999999999999987777774

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=96.82  E-value=0.012  Score=40.56  Aligned_cols=67  Identities=24%  Similarity=0.431  Sum_probs=51.9

Q ss_pred             HHHHHHHHhccchhhhhc---CCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEE
Q 028908          115 AMIKELLETRIRPAVQDD---GGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVE  185 (202)
Q Consensus       115 ~~i~~~l~~~IrP~l~~d---GGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~  185 (202)
                      ++|.++|.+-.-|.+..+   =|-|.=+.++  +|.|+|.+.-.+.+|| ....|+..|+..|+ .+|++.+|.
T Consensus         2 ~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~--~~~V~v~l~l~~~~~~-~~~~l~~~i~~~l~-~l~gv~~V~   71 (72)
T PF01883_consen    2 QAVRDALKQVKDPELGKDIVELGMVRDISIE--GGKVSVSLELPTPACP-AAEPLREEIREALK-ALPGVKSVK   71 (72)
T ss_dssp             HHHHHHHTT-BETTTSSBTTTTTSEEEEEEC--TCEEEEEE--SSTTHT-THHHHHHHHHHHHH-TSTT-SEEE
T ss_pred             HHHHHHHhCCCCCCCCCCHHHcCCeeEEEEE--CCEEEEEEEECCCCch-HHHHHHHHHHHHHH-hCCCCceEe
Confidence            577888888888877655   3667777776  7999999999999999 55579999999999 799998886

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]

Probab=94.65  E-value=0.24  Score=37.73  Aligned_cols=78  Identities=33%  Similarity=0.443  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHhccchhhhhcC---CCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908          111 SETVAMIKELLETRIRPAVQDDG---GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  187 (202)
Q Consensus       111 ~~~~~~i~~~l~~~IrP~l~~dG---Gdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~  187 (202)
                      ..+..+|.+.|.+-+-|.|--|=   |=|.=+.++.++|.++|+|+..-.|||++.. +..-++++|++ +|.|++|+..
T Consensus        11 ~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~~~~-i~~~v~~al~~-~~~v~~v~V~   88 (111)
T COG2151          11 KVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPLAEV-IADQVEAALEE-IPGVEDVEVE   88 (111)
T ss_pred             hhhHHHHHHHhhcCCCcccceeeEeeccEEEEEEecCCceEEEEEecCCCCCCccHH-HHHHHHHHHHh-cCCcceEEEE
Confidence            45677888888888889984442   2222233343255899999999999999986 66789999988 7778877765


Q ss_pred             CCc
Q 028908          188 LDA  190 (202)
Q Consensus       188 ~~~  190 (202)
                      ..-
T Consensus        89 l~~   91 (111)
T COG2151          89 LTL   91 (111)
T ss_pred             EEE
Confidence            443

>TIGR02945 SUF_assoc FeS assembly SUF system protein

Probab=94.30  E-value=0.24  Score=36.16  Aligned_cols=71  Identities=28%  Similarity=0.383  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHhccchhhhhcC---CCEEEEEEecCC-CEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908          113 TVAMIKELLETRIRPAVQDDG---GDIEYRGFDPET-GTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  187 (202)
Q Consensus       113 ~~~~i~~~l~~~IrP~l~~dG---Gdiel~~~d~~~-g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~  187 (202)
                      +.++|.++|.+-.-|.+..+-   |-|.=+.++  + +.|+|.+.-...+||... .|++.++..|.. +|++..|...
T Consensus         2 ~~~~I~~~L~~v~dP~l~~~lv~~g~V~~i~v~--~~~~v~i~l~l~~p~~~~~~-~l~~~i~~al~~-l~gv~~v~v~   76 (99)
T TIGR02945         2 LKDAVIEALKTVYDPEIPVNIYELGLIYDIDVD--DDGHVDIQMTLTAPNCPVAG-SMPGEVENAVRA-VPGVGSVTVE   76 (99)
T ss_pred             HHHHHHHHHcCCCCCCCCCCeecCCCeeEEEEC--CCCeEEEEEEECCCCCChHH-HHHHHHHHHHHh-CCCCceEEEE
Confidence            356788888888888876543   334333343  4 789999988888888766 488889999975 7888877643

Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.

>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT

Probab=91.22  E-value=1.1  Score=36.66  Aligned_cols=77  Identities=23%  Similarity=0.293  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHhccchhhhhc---CCCEEEEEEec---CCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceE
Q 028908          111 SETVAMIKELLETRIRPAVQDD---GGDIEYRGFDP---ETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSV  184 (202)
Q Consensus       111 ~~~~~~i~~~l~~~IrP~l~~d---GGdiel~~~d~---~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V  184 (202)
                      ....++|.++|.+-.-|.+..+   =|-|.=+.++.   +++.|+|.|.-...+|++.. .|+..|+.+|.. +|.+++|
T Consensus        72 ~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~-~L~~dV~~aL~~-l~gV~~V  149 (174)
T TIGR03406        72 EDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGP-VLVEDVEDKVLA-VPNVDEV  149 (174)
T ss_pred             cccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcHHH-HHHHHHHHHHHh-CCCceeE
Confidence            3445889999998888887664   35565556664   12289999999999999877 577889999975 7898887


Q ss_pred             EecCC
Q 028908          185 EQELD  189 (202)
Q Consensus       185 ~~~~~  189 (202)
                      .....
T Consensus       150 ~V~l~  154 (174)
T TIGR03406       150 EVELV  154 (174)
T ss_pred             EEEEE
Confidence            75443

The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.

>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]

Probab=81.78  E-value=1.8  Score=27.14  Aligned_cols=25  Identities=28%  Similarity=0.271  Sum_probs=22.1

Q ss_pred             ccCCCCCcchHHHHHHHHHHHHHhh
Q 028908          153 QGACSGCPSSSVTLKSGIENMLMHY  177 (202)
Q Consensus       153 ~GaC~gCpss~~Tl~~~Ie~~l~~~  177 (202)
                      .++|.|||.-+..|...|-..||.-
T Consensus         7 G~~~~G~~ql~ESLLdrItRklr~g   31 (45)
T PF02061_consen    7 GWPRMGCPQLSESLLDRITRKLRDG   31 (45)
T ss_pred             CccccCCchhhHHHHHHHHHHHHHH
Confidence            5899999988888999999999874

Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
2ltm_A	107	Solution Nmr Structure Of Nfu1 Iron-Sulfur Cluster		2e-27
1veh_A	92	Solution Structure Of Rsgi Ruh-018, A Nifu-Like Dom		1e-24
1xhj_A	88	Solution Structure Of The Staphylococcus Epidermidi		2e-11
2z51_A	154	Crystal Structure Of Arabidopsis Cnfu Involved In I		1e-10
2jnv_A	91	Solution Structure Of C-Terminal Domain Of Nifu-Lik		3e-10

>pdb|2LTM|A Chain A, Solution Nmr Structure Of Nfu1 Iron-Sulfur Cluster Scaffold Homolog From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr2876b Length = 107

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 71/93 (76%), Gaps = 1/93 (1%)
Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG D 
Sbjct: 11  MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDS 70
Query: 61  ITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPL 92
           ITVTK +E+  W+LLKP+I+A IMDF++SG PL
Sbjct: 71  ITVTKENEELDWNLLKPDIYATIMDFFASGLPL 103

>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of Hirip5 Protein From Mouse Cdna Length = 92

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 113 TVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIEN 172
            VAMIKELL+TRIRP VQ+DGGD+ YRGF  E G V+L++QG+C+ CPSS +TLKSGI+N
Sbjct: 14  VVAMIKELLDTRIRPTVQEDGGDVIYRGF--EDGIVRLKLQGSCTSCPSSIITLKSGIQN 71
Query: 173 MLMHYVPEVKSVEQ 186
           ML  Y+PEV+ VEQ
Sbjct: 72  MLQFYIPEVEGVEQ 85

>pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis Protein Se0630. Northest Structural Genomics Consortium Target Ser8 Length = 88

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 117 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 176
           + E++E R+RP +  DGGD      D E G VKL++ GAC  CPSS++TLK+GIE  L  
Sbjct: 12  VAEVIE-RLRPFLLRDGGDCTL--VDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHE 68
Query: 177 YVPEVKSVEQ 186
            VP V  VEQ
Sbjct: 69  EVPGVIEVEQ 78

>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron- Sulfur Cluster Biosynthesis Length = 154

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 125 IRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSV 184
           IRP +  DGG++     D     V++++QGAC  CPSS++T+K GIE  LM  +PE+ +V
Sbjct: 16  IRPYLMSDGGNVALHEID--GNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAV 73
Query: 185 EQELDAE 191
           E   D E
Sbjct: 74  EALPDEE 80

>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like Protein From Oryza Sativa Length = 91

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 124 RIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKS 183
           ++RP +  DGGD+     +     V+L++QGAC  CPSS +T+K GIE  LM  +P+V +
Sbjct: 16  QVRPYLTADGGDVAL--HEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPDVAA 73
Query: 184 VEQELDAE 191
           VE   D E
Sbjct: 74  VEPVTDKE 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	1e-52
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	5e-46
2ltm_A	107	NFU1 iron-sulfur cluster scaffold homolog, mitoch;	6e-41
1pqx_A	91	Conserved hypothetical protein; ZR18,structure, au	3e-40
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	1e-38
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	2e-20
2k1h_A	94	Uncharacterized protein Ser13; structural genomics	3e-38
2ltl_A	119	NIFU-like protein, mitochondrial; structural genom	8e-36
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	3e-22

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1 Length = 92

 Score =  162 bits (413), Expect = 1e-52
 Identities = 52/92 (56%), Positives = 70/92 (76%), Gaps = 2/92 (2%)

Query: 100 AAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGC 159
            +  ++ +E+D E VAMIKELL+TRIRP VQ+DGGD+ YRGF+   G V+L++QG+C+ C
Sbjct: 1   GSSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFE--DGIVRLKLQGSCTSC 58

Query: 160 PSSSVTLKSGIENMLMHYVPEVKSVEQELDAE 191
           PSS +TLKSGI+NML  Y+PEV+ VEQ     
Sbjct: 59  PSSIITLKSGIQNMLQFYIPEVEGVEQVSGPS 90

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1 Length = 88

 Score =  145 bits (369), Expect = 5e-46
 Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 106 INEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVT 165
           +  ++      + E++E R+RP +  DGGD        E G VKL++ GAC  CPSS++T
Sbjct: 1   MPTENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDV--EDGIVKLQLHGACGTCPSSTIT 57

Query: 166 LKSGIENMLMHYVPEVKSVEQELDAEDEVA 195
           LK+GIE  L   VP V  VEQ         
Sbjct: 58  LKAGIERALHEEVPGVIEVEQVFLEHHHHH 87

>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens} Length = 107

 Score =  133 bits (337), Expect = 6e-41
 Identities = 56/96 (58%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 1   MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
           MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG D 
Sbjct: 11  MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDS 70

Query: 61  ITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPLFLD 95
           ITVTK +E+  W+LLKP+I+A IMDF++SG PL  +
Sbjct: 71  ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE 106

>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A Length = 91

 Score =  131 bits (332), Expect = 3e-40
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 1  MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
            I    TPN +++     +    + S  +     +        +  V+G+  +F   DF
Sbjct: 2  KIISISETPNHNTMKITLSESREGMTSDTYTKVDDS-QPAFINDILKVEGVKSIFHVMDF 60

Query: 61 ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQ 90
          I+V K  D +W+ + P++ A     +    
Sbjct: 61 ISVDKENDANWETVLPKVEAVFELEHHHHH 90

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A Length = 154

 Score =  129 bits (326), Expect = 1e-38
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 111 SETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGI 170
             T   ++ +L+  IRP +  DGG++     D     V++++QGAC  CPSS++T+K GI
Sbjct: 3   PLTEENVESVLD-EIRPYLMSDGGNVALHEID--GNVVRVKLQGACGSCPSSTMTMKMGI 59

Query: 171 ENMLMHYVPEVKSVEQ 186
           E  LM  +PE+ +VE 
Sbjct: 60  ERRLMEKIPEIVAVEA 75

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A Length = 154

 Score = 82.5 bits (204), Expect = 2e-20
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 116 MIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLM 175
            I+++LE      +    G ++    +     VK+R+ G  +G     +T++  +   L 
Sbjct: 89  NIEKVLEEIRPYLIGTADGSLDLVEIED--PIVKIRITGPAAGV----MTVRVAVTQKLR 142

Query: 176 HYVPEVKSVEQ 186
             +P + +V+ 
Sbjct: 143 EKIPSIAAVQL 153

>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis} Length = 94

 Score =  126 bits (318), Expect = 3e-38
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 1  MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
            I    TPN +++     +P  +     +  A+          L+ ++G+  +F+  DF
Sbjct: 2  EIIAISETPNHNTMKVSLSEPRQDNSFTTYTAAQEG-QPEFINRLFEIEGVKSIFYVLDF 60

Query: 61 ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQP 91
          I++ K ++ +W+ L P+I             
Sbjct: 61 ISIDKEDNANWNELLPQIENTFAKSNLEHHH 91

>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae} Length = 119

 Score =  121 bits (304), Expect = 8e-36
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 1   MFIQTQPTPNPSSLMFYP--GKPVMEVGSADF----PNARAAMNSPLAKSLY-GVDGITR 53
           + I+T  TPN ++L F    G+ +   GS        +     +S LA+ ++    G+  
Sbjct: 17  IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVES 76

Query: 54  VFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLD 95
           +  G DF+T+ K     W+ +KPEI   +    + G+ +   
Sbjct: 77  LMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVISK 118

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1 Length = 74

 Score = 84.6 bits (210), Expect = 3e-22
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 113 TVAMIKELLETRIRP-AVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIE 171
               ++++L   IRP      GG +++         VK+R+ G  +       T++  + 
Sbjct: 5   NEENVEKVLN-EIRPYLAGTGGGGLQFLMIKG--PIVKVRLTGPAAVV----RTVRIAVS 57

Query: 172 NMLMHYVPEVKSVEQ 186
             L   +P ++ V+ 
Sbjct: 58  KKLREKIPSIQIVQL 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
2ltm_A	107	NFU1 iron-sulfur cluster scaffold homolog, mitoch;	100.0
2ltl_A	119	NIFU-like protein, mitochondrial; structural genom	100.0
2k1h_A	94	Uncharacterized protein Ser13; structural genomics	100.0
1pqx_A	91	Conserved hypothetical protein; ZR18,structure, au	99.97
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	99.96
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	99.95
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	99.9
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	99.88
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	99.78
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	97.82
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	97.17
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	96.94
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	85.91

>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}

Probab=100.00  E-value=3.5e-37  Score=230.90  Aligned_cols=95  Identities=59%  Similarity=1.066  Sum_probs=91.9

Q ss_pred             CceeccCCCCCCceeeecCcccCCCcceecCChhhhcCcHHHHhccCCCCeeEEEEeCCeEEEEe-cCCCChhhhhHHHH
Q 028908            1 MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTK-SEDTSWDLLKPEIF   79 (202)
Q Consensus         1 mfI~~e~TPNP~~lKF~~~~~~~~~~~~~f~~~~~a~~spLa~~Lf~i~gV~~Vf~~~dfItVtk-~~~~~W~~l~~~I~   79 (202)
                      ||||||+|||||+|||+|++.+++.|+++|++.++|.+||||++||+|+||++||++.||||||| .++++|+.|+++|+
T Consensus        11 ~~~qtE~TPNPntLKF~p~~~vl~~gs~eF~~~~~a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~~dW~~ikp~V~   90 (107)
T 2ltm_A           11 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIY   90 (107)
Confidence            89999999999999999999999888999999999999999999999999999999999999999 88999999999999


Q ss_pred             HHHHHHHhcCCCCccc
Q 028908           80 AAIMDFYSSGQPLFLD   95 (202)
Q Consensus        80 ~~I~d~l~sG~pvv~~   95 (202)
                      ++|++||.+|.|++.+
T Consensus        91 ~~I~~~~~sG~pvv~~  106 (107)
T 2ltm_A           91 ATIMDFFASGLPLVTE  106 (107)
Confidence            9999999999998753

>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-35  Score=224.92  Aligned_cols=94  Identities=26%  Similarity=0.521  Sum_probs=90.6

Q ss_pred             CceeccCCCCCCceeee-cCcccCCC--c-ceecCChhhhc--CcHHHHhcc-CCCCeeEEEEeCCeEEEEecCCCChhh
Q 028908            1 MFIQTQPTPNPSSLMFY-PGKPVMEV--G-SADFPNARAAM--NSPLAKSLY-GVDGITRVFFGSDFITVTKSEDTSWDL   73 (202)
Q Consensus         1 mfI~~e~TPNP~~lKF~-~~~~~~~~--~-~~~f~~~~~a~--~spLa~~Lf-~i~gV~~Vf~~~dfItVtk~~~~~W~~   73 (202)
                      ||||||+|||||+|||+ |++++++.  | +++|++.++|.  +||||++|| +|+||++||++.|||||||+++++|+.
T Consensus        17 mfIqtE~TPNPntLKF~sp~~~vl~~~~g~t~~f~~~~~a~~~~SPLA~~LF~~i~GV~~Vf~g~DFITVtK~~~~dW~~   96 (119)
T 2ltl_A           17 IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKDRMVHWNS   96 (119)
Confidence            89999999999999999 99999876  5 89999999998  899999999 999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCcc
Q 028908           74 LKPEIFAAIMDFYSSGQPLFL   94 (202)
Q Consensus        74 l~~~I~~~I~d~l~sG~pvv~   94 (202)
                      |+|+|+++|++||.+|.|++.
T Consensus        97 ikp~I~~~I~e~~~sg~pvv~  117 (119)
T 2ltl_A           97 IKPEIIDLLTKQLAYGEDVIS  117 (119)
Confidence            999999999999999999875

>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}

Probab=100.00  E-value=1.7e-33  Score=206.63  Aligned_cols=86  Identities=20%  Similarity=0.437  Sum_probs=81.4

Q ss_pred             ceeccCCCCCCceeeecCcccCCCcceecCChhhhcCcHHHHhccCCCCeeEEEEeCCeEEEEecCCCChhhhhHHHHHH
Q 028908            2 FIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAA   81 (202)
Q Consensus         2 fI~~e~TPNP~~lKF~~~~~~~~~~~~~f~~~~~a~~spLa~~Lf~i~gV~~Vf~~~dfItVtk~~~~~W~~l~~~I~~~   81 (202)
                      |||||+|||||+|||+||+.+.++++.+|++.+ |.+||||++||+|+||++||+++|||||||.++++|+.|+++|+++
T Consensus         3 ~Iqte~TPNPntlKF~~~~~l~~g~s~~f~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~dW~~ikp~I~~~   81 (94)
T 2k1h_A            3 IIAISETPNHNTMKVSLSEPRQDNSFTTYTAAQ-EGQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNELLPQIENT   81 (94)
T ss_dssp             CCCCBCCSSSSCEEEECCCCCTTCCCCEECCCC-TTSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHHHHHHHHHH
T ss_pred             eEEeecCCChhcEEEeCCCCcCCCCceecCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCCCHHHHHHHHHHH
Confidence            799999999999999999998777799999999 8899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q 028908           82 IMDFYSS   88 (202)
Q Consensus        82 I~d~l~s   88 (202)
                      |++|+..
T Consensus        82 I~~~~~~   88 (94)
T 2k1h_A           82 FAKSNLE   88 (94)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHh
Confidence            9999854

>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A

Probab=99.97  E-value=1.1e-32  Score=201.35  Aligned_cols=82  Identities=21%  Similarity=0.407  Sum_probs=78.7

Q ss_pred             ceeccCCCCCCceeeecCcccCCCcceecCChhhhcCcHHHHhccCCCCeeEEEEeCCeEEEEecCCCChhhhhHHHHHH
Q 028908            2 FIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAA   81 (202)
Q Consensus         2 fI~~e~TPNP~~lKF~~~~~~~~~~~~~f~~~~~a~~spLa~~Lf~i~gV~~Vf~~~dfItVtk~~~~~W~~l~~~I~~~   81 (202)
                      |||+|+|||||+|||+|++.+.++++.+|++.+ |.+||||++||+|+||++||++.|||||||.++++|+.|+++|+++
T Consensus         3 ~Iqte~TPNPn~lKF~~~~~l~~g~s~~F~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~dW~~ikp~V~~~   81 (91)
T 1pqx_A            3 IISISETPNHNTMKITLSESREGMTSDTYTKVD-DSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEAV   81 (91)
T ss_dssp             CCBCCCCSCSSEEEEECSCCSSCCCCEEESSSC-SSCCHHHHHHHHSTTEEEEEEETTEEEEEECTTSCSTTTHHHHHHH
T ss_pred             eEEeecCCChhcEEEeCCcCcCCCCceEeCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCCCHHHHHHHHHHH
Confidence            799999999999999999998777799999999 9899999999999999999999999999999999999999999998


Q ss_pred             HHH
Q 028908           82 IMD   84 (202)
Q Consensus        82 I~d   84 (202)
                      |++
T Consensus        82 I~~   84 (91)
T 1pqx_A           82 FEL   84 (91)
T ss_dssp             TCS
T ss_pred             HHH
Confidence            865

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=99.96  E-value=4.6e-30  Score=187.80  Aligned_cols=86  Identities=60%  Similarity=1.042  Sum_probs=80.8

Q ss_pred             ccCCCCchHHHHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcce
Q 028908          104 TAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKS  183 (202)
Q Consensus       104 ~~~~~~~~~~~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~  183 (202)
                      ..+.++++++.++|+++|+++|||+|++|||||+|++|+  +|+|+|||+|||+|||||++||+++||++|++++|+|+.
T Consensus         5 ~~~~~~d~~~~~~I~~~L~~~IRP~L~~dGGdvelv~v~--~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~   82 (92)
T 1veh_A            5 SSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFE--DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEG   82 (92)
T ss_dssp             CSSCSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEE--TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCC
T ss_pred             cccCCCchHHHHHHHHHHHHHhhHHHHhcCCeEEEEEEe--CCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCE
Confidence            345567889999999999999999999999999999998  799999999999999999999999999999999999999


Q ss_pred             EEecCCcc
Q 028908          184 VEQELDAE  191 (202)
Q Consensus       184 V~~~~~~~  191 (202)
                      |+++++++
T Consensus        83 V~~v~~~~   90 (92)
T 1veh_A           83 VEQVSGPS   90 (92)
T ss_dssp             EEECSCSC
T ss_pred             EEEcCCCC
Confidence            99998765

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=99.95  E-value=6.3e-29  Score=180.30  Aligned_cols=78  Identities=41%  Similarity=0.695  Sum_probs=73.9

Q ss_pred             chHHHHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCC
Q 028908          110 DSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD  189 (202)
Q Consensus       110 ~~~~~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~  189 (202)
                      +.++.++|+++|++ |||+|++|||||+|++|+  +|+|+|||+|||+|||||++||+++||++|++++|+|+.|++.++
T Consensus         5 ~~~~~~~I~~~L~~-IRP~L~~dGGdvelv~v~--~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~~   81 (88)
T 1xhj_A            5 NPTMFDQVAEVIER-LRPFLLRDGGDCTLVDVE--DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFL   81 (88)
T ss_dssp             CSCHHHHHHHHHHH-HHHHHHHHSCEEEEEECC--SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred             hHHHHHHHHHHHHH-hcHHHHhcCCeEEEEEEE--CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEeccc
Confidence            45689999999996 999999999999999997  799999999999999999999999999999999999999999887


Q ss_pred             c
Q 028908          190 A  190 (202)
Q Consensus       190 ~  190 (202)
                      +
T Consensus        82 ~   82 (88)
T 1xhj_A           82 E   82 (88)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=99.90  E-value=7.3e-25  Score=174.18  Aligned_cols=78  Identities=38%  Similarity=0.731  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCCcchH
Q 028908          114 VAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDE  193 (202)
Q Consensus       114 ~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~~~~~  193 (202)
                      .++|+++|+ +|||+|++|||||+|+++|  +|+|+|||+|+|+|||||++||+++||++|++++|+++.|++..++++.
T Consensus         6 ~e~v~~~L~-~iRP~l~~dGGdvelv~v~--~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v~~~~e~   82 (154)
T 2z51_A            6 EENVESVLD-EIRPYLMSDGGNVALHEID--GNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETG   82 (154)
T ss_dssp             HHHHHHHHH-HHHHHHHHTTEEEEEEEEE--TTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEECCSSCCS
T ss_pred             HHHHHHHHH-HhChHHHhcCCeEEEEEEE--CCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEccCchhh
Confidence            578999998 6999999999999999998  7899999999999999999999999999999999999999999887764


Q ss_pred             H
Q 028908          194 V  194 (202)
Q Consensus       194 ~  194 (202)
                      +
T Consensus        83 l   83 (154)
T 2z51_A           83 L   83 (154)
T ss_dssp             C
T ss_pred             h
Confidence            3

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=99.88  E-value=1.7e-23  Score=147.21  Aligned_cols=68  Identities=21%  Similarity=0.404  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhccchhhhhcC-CCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908          113 TVAMIKELLETRIRPAVQDDG-GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  187 (202)
Q Consensus       113 ~~~~i~~~l~~~IrP~l~~dG-Gdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~  187 (202)
                      +.++|+++|++ |||+|++|| ||++|++++  +|+|+|||+|||+||    +||+++||++|++++|+|+.|+++
T Consensus         5 ~~~~V~~~L~~-iRP~L~~dGGGdvelv~v~--~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vpei~~V~~v   73 (74)
T 1th5_A            5 NEENVEKVLNE-IRPYLAGTGGGGLQFLMIK--GPIVKVRLTGPAAVV----RTVRIAVSKKLREKIPSIQIVQLL   73 (74)
T ss_dssp             SHHHHHHHHTT-THHHHTTTTCCCCCCCEEE--TTEEEECCCSSSSSS----SSHHHHHHHHHHHHCTTCSEEEEC
T ss_pred             HHHHHHHHHHH-HhHHHHhcCCCcEEEEEEe--CCEEEEEEecCCcch----HHHHHHHHHHHHHHCCCCcEEEeC
Confidence            47899999996 999999999 999999998  799999999999999    699999999999999999999875

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=99.78  E-value=4.7e-19  Score=140.69  Aligned_cols=122  Identities=19%  Similarity=0.290  Sum_probs=91.9

Q ss_pred             eeEEEEeCCeEEEEecCC-----CChhhhhHHHHHHHHHHHhcCCCCccchhhhhhhcccCCCCchHHHHHHHHHHHhcc
Q 028908           51 ITRVFFGSDFITVTKSED-----TSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRI  125 (202)
Q Consensus        51 V~~Vf~~~dfItVtk~~~-----~~W~~l~~~I~~~I~d~l~sG~pvv~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~I  125 (202)
                      |.=|-+.++.+.|...+.     .+=..++..|...|++++..    +.....  ..+.  ........++|+++|+ .|
T Consensus        27 velv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpe----v~~V~~--v~~~--~e~l~L~~~~v~~~L~-~i   97 (154)
T 2z51_A           27 VALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPE----IVAVEA--LPDE--ETGLELNEENIEKVLE-EI   97 (154)
T ss_dssp             EEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTT----CCEEEE--CCSS--CCSCCSSHHHHHHHHH-HH
T ss_pred             EEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCC----ceEEEE--ccCc--hhhhHHHHHHHHHHHH-HH
Confidence            776777778888876542     23346788888888888732    211110  0001  1112234689999999 59


Q ss_pred             chhhhh-cCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908          126 RPAVQD-DGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  187 (202)
Q Consensus       126 rP~l~~-dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~  187 (202)
                      ||+|++ ||||++|+++|  +|+|+|||+|+|+||    +|++++||++|++++|+|++|++.
T Consensus        98 RP~L~~~dGGdvelv~v~--~~~v~v~l~Gac~~~----~Tlk~~Ie~~l~e~vP~i~~V~~~  154 (154)
T 2z51_A           98 RPYLIGTADGSLDLVEIE--DPIVKIRITGPAAGV----MTVRVAVTQKLREKIPSIAAVQLI  154 (154)
T ss_dssp             GGGCCGGGCCEEEEEEEE--TTEEEEEEESGGGGC----HHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred             HHHhhhcCCCCeEEEEEE--CCEEEEEEecCCccc----HhHHHHHHHHHHHHCCCccEEEeC
Confidence            999998 99999999998  799999999999998    699999999999999999999863

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=97.82  E-value=0.0001  Score=53.79  Aligned_cols=73  Identities=27%  Similarity=0.312  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhccchhhhhcC---CCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCC
Q 028908          113 TVAMIKELLETRIRPAVQDDG---GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD  189 (202)
Q Consensus       113 ~~~~i~~~l~~~IrP~l~~dG---Gdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~  189 (202)
                      ..++|.++|.+-+.|.+..+-   |-|.-+.++  +|.|+|.|...+.+||... +++..|+.+|+ .+|+|.+|.....
T Consensus         7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~--~~~V~v~l~lt~~~cp~~~-~l~~~i~~al~-~l~gv~~V~V~l~   82 (103)
T 3cq1_A            7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVE--PPRAYVRMTLTTPGCPLHD-SLGEAVRQALS-RLPGVEEVEVEVT   82 (103)
T ss_dssp             HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEE--TTEEEEEECCSSSSCCSSC-HHHHHHHHHHH-TSTTCCEEEEEEC
T ss_pred             HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEE--CCEEEEEEEECCCCCcHHH-HHHHHHHHHHH-hCCCceeEEEEEe
Confidence            567899999988999998887   778877777  6799999999999999855 78899999997 5899988876443

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=97.17  E-value=0.0017  Score=47.77  Aligned_cols=78  Identities=23%  Similarity=0.284  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHhccchhhhhc---CCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908          111 SETVAMIKELLETRIRPAVQDD---GGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  187 (202)
Q Consensus       111 ~~~~~~i~~~l~~~IrP~l~~d---GGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~  187 (202)
                      ....++|.++|.+-+-|.+..+   -|-|.=+.++. +|.|+|.|.-.+.+||... .++..|+.+|+..+|++.+|...
T Consensus         7 ~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~-~~~V~V~ltlt~p~cp~~~-~i~~~i~~al~~~l~Gv~~V~V~   84 (108)
T 3lno_A            7 EAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADE-NNNAVITMTMTSIGCPMAG-QIVSDVKKVLSTNVPEVNEIEVN   84 (108)
T ss_dssp             HHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECT-TCCEEEEECCSCTTCTTHH-HHHHHHHHHHHHHCTTCCCEEEE
T ss_pred             hhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECC-CCeEEEEEEECCCCCcHHH-HHHHHHHHHHHHhCCCCceEEEE
Confidence            3467889999998889988654   46677776662 4889999999999999876 78999999997779999988765


Q ss_pred             CCc
Q 028908          188 LDA  190 (202)
Q Consensus       188 ~~~  190 (202)
                      ...
T Consensus        85 l~~   87 (108)
T 3lno_A           85 VVW   87 (108)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            443

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=96.94  E-value=0.0033  Score=45.56  Aligned_cols=73  Identities=23%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhccchhhhhcC---CCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCC
Q 028908          114 VAMIKELLETRIRPAVQDDG---GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD  189 (202)
Q Consensus       114 ~~~i~~~l~~~IrP~l~~dG---Gdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~  189 (202)
                      .++|.++|.+-+-|.+..+-   |-|.=+.++. +|.|+|.|.-.+.+||... .++..|+++|++ +|+|.+|.....
T Consensus         8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~-~~~V~v~l~lt~~~cp~~~-~l~~~i~~al~~-l~gv~~v~V~l~   83 (103)
T 1uwd_A            8 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDD-QNNVKVLMTMTTPMCPLAG-MILSDAEEAIKK-IEGVNNVEVELT   83 (103)
T ss_dssp             HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECT-TCEEEEEECCSSSCCSSHH-HHHHHHHHHHHT-SSSCCEEEEEEC
T ss_pred             HHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcC-CCEEEEEEEECCCCCcHHH-HHHHHHHHHHHh-CCCcceEEEEEe
Confidence            46788889877779887765   5566555652 3799999999999999854 789999999974 899988876443

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A

Probab=85.91  E-value=1.2  Score=33.78  Aligned_cols=45  Identities=16%  Similarity=0.237  Sum_probs=36.1

Q ss_pred             EecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEe
Q 028908          141 FDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQ  186 (202)
Q Consensus       141 ~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~  186 (202)
                      ++.+++.|.|.|+=.=.|||+++. +...|+.+|++.+|...+|..
T Consensus        45 ~~~~~~~V~V~~TPT~p~Cp~a~~-I~l~Ir~kL~~~lp~~~kV~v   89 (130)
T 3ux2_A           45 INEEEYLVIIRFTPTVPHCSLATL-IGLCLRVKLQRCLPFKHKLEI   89 (130)
T ss_dssp             EETTEEEEEECCCCCCCSSCHHHH-HHHHHHHHHHHHCSSCCCCCC
T ss_pred             ccCCCCeEEEEEEeCCCCCCchHH-HHHHHHHHHHHhCCCceEEEE
Confidence            344457899999999999999985 667899999998987665553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1veha_	92	d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {	2e-36
d2ffma1	83	d.267.1.1 (A:1-83) Hypothetical protein SAV1430 {S	1e-30
d1xhja_	88	d.52.8.1 (A:) Nitrogen fixation protein NifU homol	3e-30
d1th5a1	73	d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {	4e-21

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (303), Expect = 2e-36
 Identities = 52/90 (57%), Positives = 70/90 (77%), Gaps = 2/90 (2%)

Query: 100 AAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGC 159
            +  ++ +E+D E VAMIKELL+TRIRP VQ+DGGD+ YRGF+   G V+L++QG+C+ C
Sbjct: 1   GSSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFED--GIVRLKLQGSCTSC 58

Query: 160 PSSSVTLKSGIENMLMHYVPEVKSVEQELD 189
           PSS +TLKSGI+NML  Y+PEV+ VEQ   
Sbjct: 59  PSSIITLKSGIQNMLQFYIPEVEGVEQVSG 88

>d2ffma1 d.267.1.1 (A:1-83) Hypothetical protein SAV1430 {Staphylococcus aureus [TaxId: 1280]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein SAV1430
superfamily: Hypothetical protein SAV1430
family: Hypothetical protein SAV1430
domain: Hypothetical protein SAV1430
species: Staphylococcus aureus [TaxId: 1280]

 Score =  105 bits (264), Expect = 1e-30
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 1  MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 60
            I    TPN +++     +    + S  +     +        +  V+G+  +F   DF
Sbjct: 2  KIISISETPNHNTMKITLSESREGMTSDTYTKVDDS-QPAFINDILKVEGVKSIFHVMDF 60

Query: 61 ITVTKSEDTSWDLLKPEIFAAI 82
          I+V K  D +W+ + P++ A  
Sbjct: 61 ISVDKENDANWETVLPKVEAVF 82

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

 Score =  104 bits (262), Expect = 3e-30
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 106 INEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVT 165
           +  ++      + E++E R+RP +  DGGD      +   G VKL++ GAC  CPSS++T
Sbjct: 1   MPTENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVE--DGIVKLQLHGACGTCPSSTIT 57

Query: 166 LKSGIENMLMHYVPEVKSVEQ 186
           LK+GIE  L   VP V  VEQ
Sbjct: 58  LKAGIERALHEEVPGVIEVEQ 78

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 80.9 bits (200), Expect = 4e-21
 Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 117 IKELLETRIRPAVQ-DDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLM 175
           ++++L   IRP +    GG +++         VK+R+ G  +       T++  +   L 
Sbjct: 8   VEKVLN-EIRPYLAGTGGGGLQFLMIK--GPIVKVRLTGPAAVVR----TVRIAVSKKLR 60

Query: 176 HYVPEVKSVE 185
             +P ++ V+
Sbjct: 61  EKIPSIQIVQ 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d2ffma1	83	Hypothetical protein SAV1430 {Staphylococcus aureu	99.96
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	99.96
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	99.94
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	99.86
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	96.71
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	95.86
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	83.84

>d2ffma1 d.267.1.1 (A:1-83) Hypothetical protein SAV1430 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein SAV1430
superfamily: Hypothetical protein SAV1430
family: Hypothetical protein SAV1430
domain: Hypothetical protein SAV1430
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.96  E-value=1.4e-29  Score=180.48  Aligned_cols=81  Identities=21%  Similarity=0.441  Sum_probs=75.4

Q ss_pred             CceeccCCCCCCceeeecCcccCCCcceecCChhhhcCcHHHHhccCCCCeeEEEEeCCeEEEEecCCCChhhhhHHHHH
Q 028908            1 MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFA   80 (202)
Q Consensus         1 mfI~~e~TPNP~~lKF~~~~~~~~~~~~~f~~~~~a~~spLa~~Lf~i~gV~~Vf~~~dfItVtk~~~~~W~~l~~~I~~   80 (202)
                      ++|++|+|||||+|||++++.+..+++.+|++.+++ .+|||++||+++||++||+++|||||+|.++++|++|+++|++
T Consensus         2 ~~I~~e~TPNPn~lKFi~~~~l~~~~~~~~~~~~~~-~~pla~~Lf~i~gV~~Vf~~~dFITVtK~~~~~W~~l~~~I~~   80 (83)
T d2ffma1           2 KIISISETPNHNTMKITLSESREGMTSDTYTKVDDS-QPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEA   80 (83)
T ss_dssp             CEEEEEECSSSSEEEEEESSCCSSSCCEEECSCCTT-SCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHHHHHHHHH
T ss_pred             cEEEcccCCCcccEEEecCccccCCCceeeCchhhh-cCHHHHHHHcCCCceEEEEeCCEEEEEeCCCCCHHHHHHHHHH
Confidence            467999999999999999999998899999987755 7999999999999999999999999999999999999999987


Q ss_pred             HH
Q 028908           81 AI   82 (202)
Q Consensus        81 ~I   82 (202)
                      ++
T Consensus        81 ~~   82 (83)
T d2ffma1          81 VF   82 (83)
T ss_dssp             TT
T ss_pred             Hh
Confidence            54

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.7e-29  Score=183.00  Aligned_cols=83  Identities=63%  Similarity=1.088  Sum_probs=79.3

Q ss_pred             CCCchHHHHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEe
Q 028908          107 NEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQ  186 (202)
Q Consensus       107 ~~~~~~~~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~  186 (202)
                      .++++++.++|+++|+.+|||+|++|||||+|++|+  +|+|+|+|+|+|+|||+|++||+++||++|++++|+|+.|++
T Consensus         8 ~~~d~e~~~~I~~vL~~~IrP~l~~dGGdv~lv~v~--~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~~   85 (92)
T d1veha_           8 SEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFE--DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQ   85 (92)
T ss_dssp             CSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEE--TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEE
T ss_pred             CCccHHHHHHHHHHHHHhcChHHHHcCCceEEEEee--CCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceEEE
Confidence            456889999999999999999999999999999998  799999999999999999999999999999999999999999


Q ss_pred             cCCcc
Q 028908          187 ELDAE  191 (202)
Q Consensus       187 ~~~~~  191 (202)
                      ++++.
T Consensus        86 v~~~~   90 (92)
T d1veha_          86 VSGPS   90 (92)
T ss_dssp             CSCSC
T ss_pred             cCCCC
Confidence            98874

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=99.94  E-value=1e-27  Score=172.25  Aligned_cols=77  Identities=43%  Similarity=0.754  Sum_probs=72.5

Q ss_pred             CchHHHHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecC
Q 028908          109 DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQEL  188 (202)
Q Consensus       109 ~~~~~~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~  188 (202)
                      ++.++.++|+++|+ +|||+|++|||||+|++++  +|+|+|||+|||+|||+|++||+++||++|++++|++..|+.+.
T Consensus         4 ~~~~l~~~I~~vLe-~IRP~l~~dGGdvelv~v~--~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~V~   80 (88)
T d1xhja_           4 ENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVE--DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF   80 (88)
T ss_dssp             CCSCHHHHHHHHHH-HHHHHHHHHSCEEEEEECC--SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred             CcHHHHHHHHHHHH-HhhHHHHhCCCcEEEEecc--CCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEEec
Confidence            46779999999997 7999999999999999987  89999999999999999999999999999999999999999863

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.86  E-value=6.7e-23  Score=142.09  Aligned_cols=67  Identities=21%  Similarity=0.416  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhccchhhh-hcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908          114 VAMIKELLETRIRPAVQ-DDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  187 (202)
Q Consensus       114 ~~~i~~~l~~~IrP~l~-~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~  187 (202)
                      .++|+.+|+ +|||+|+ +|||||+|+++|  +|+|+|||+|+|+||+    ||+++||++|++++|||+.|+..
T Consensus         5 ee~V~~vL~-eirP~l~a~dGGdvelv~i~--~~~v~v~l~GaC~gC~----Tl~~gIe~~L~~~iPei~~V~~v   72 (73)
T d1th5a1           5 EENVEKVLN-EIRPYLAGTGGGGLQFLMIK--GPIVKVRLTGPAAVVR----TVRIAVSKKLREKIPSIQIVQLL   72 (73)
T ss_dssp             HHHHHHHHT-TTHHHHTTTTCCCCCCCEEE--TTEEEECCCSSSSSSS----SHHHHHHHHHHHHCTTCSEEEEC
T ss_pred             HHHHHHHHH-HhcccccccCCceEEEEEec--CCEEEEEecCCCcccc----hHHHHHHHHHHHHCCCccEEEec
Confidence            578999998 7999997 699999999998  7999999999999994    99999999999999999999865

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=96.71  E-value=0.004  Score=42.71  Aligned_cols=75  Identities=28%  Similarity=0.316  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhccchhhhhc---CCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCC
Q 028908          113 TVAMIKELLETRIRPAVQDD---GGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD  189 (202)
Q Consensus       113 ~~~~i~~~l~~~IrP~l~~d---GGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~  189 (202)
                      +.++|.++|.+-+-|.+..+   =|-|.-+.++  +|.+.|.|.-.+.+||... .+.+.|+.+|+. +|++.+|.....
T Consensus         2 le~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~--~~~v~v~l~lt~~~cp~~~-~i~~~i~~al~~-l~gv~~V~V~~~   77 (91)
T d2cu6a1           2 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVE--PPRAYVRMTLTTPGCPLHD-SLGEAVRQALSR-LPGVEEVEVEVT   77 (91)
T ss_dssp             HHHHHHHHHTTCEETTTTEETTTTTCEEEEEEE--TTEEEEEECCSSSSCCSSC-HHHHHHHHHHHT-STTCCEEEEEEC
T ss_pred             hHHHHHHHHhcCCCCCCCcChhhccceeEEEEe--ccccEEEEEcCCCCCcHHH-HHHHHHHHHHHc-CCCCceEEEEEE
Confidence            56888899998888988654   3667777777  7899999999999999887 588899999975 899999887665


Q ss_pred             cc
Q 028908          190 AE  191 (202)
Q Consensus       190 ~~  191 (202)
                      .+
T Consensus        78 ~~   79 (91)
T d2cu6a1          78 FE   79 (91)
T ss_dssp             CS
T ss_pred             ec
Confidence            44

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=95.86  E-value=0.018  Score=40.25  Aligned_cols=74  Identities=23%  Similarity=0.214  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhccchhhhhc---CCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCCc
Q 028908          114 VAMIKELLETRIRPAVQDD---GGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDA  190 (202)
Q Consensus       114 ~~~i~~~l~~~IrP~l~~d---GGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~~  190 (202)
                      .++|.+.|.+.+-|.+..+   =|-|.=+.++. +|.|.|.|.=.+.+||... .+...|++.|++ +|+|.+|......
T Consensus         7 ~~~V~~aL~~V~DPe~~~dIV~LGlV~~i~I~~-~g~V~v~~~lt~~~Cp~~~-~i~~~i~~al~~-~~gV~~v~V~i~~   83 (102)
T d1uwda_           7 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDD-QNNVKVLMTMTTPMCPLAG-MILSDAEEAIKK-IEGVNNVEVELTF   83 (102)
T ss_dssp             HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECT-TCEEEEEECCSSSCCSSHH-HHHHHHHHHHHT-SSSCCEEEEEECC
T ss_pred             HHHHHHHHhCCCCCCCCcceeeccceeeEEecc-ccceEEEEecCCCCCchHH-HHHHHHHHHHHc-CCCCceEEEEEEe
Confidence            4677788888888887443   23354455552 4799999999999999876 688899999995 9999988865543

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.84  E-value=0.7  Score=30.17  Aligned_cols=33  Identities=24%  Similarity=0.575  Sum_probs=25.0

Q ss_pred             CEEEEEecc-CCCCCcchHHHHHHHHHHHHHhhCCCcceEEe
Q 028908          146 GTVKLRMQG-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQ  186 (202)
Q Consensus       146 g~v~v~l~G-aC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~  186 (202)
                      .++.++..| .|.+|..       .||+.|+. +|.|..|..
T Consensus         9 ~~v~l~V~GMtC~~C~~-------~Ie~~l~~-~~GV~~v~v   42 (84)
T d1q8la_           9 VVLKMKVEGMTCHSCTS-------TIEGKIGK-LQGVQRIKV   42 (84)
T ss_dssp             EEEEEEECCTTTCSSCH-------HHHHHHHT-CTTEEEEEE
T ss_pred             EEEEEEECCeEcHHHHH-------HHHHHHhc-CCCceEEEE
Confidence            467788888 8998875       47777776 888887765