Citrus Sinensis ID: 028918

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MQLQLRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI
Secondary Structure (PSIPRED)
ccccccccccccEEcccccccccccccccccccEEccccccccccccccccccccccccccEEEEEEEEEccccccEEEccHHHHHHHHHHcccccEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHHccccEEEEEEcccccccccccEEEEEEcccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccHHHHHHHccccccccccccHHHHcccccccccccccccccccccccccccHHHHEEEEEccccccccEEccHHHHHHcHHHHHHcHHcHEEEEEEHcccEEEEcccccccHHHHHHHHHHHHcccccccccEEcccccccccHHHHHHHccccEEEEcccccEEEcccEEEEEEcccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mqlqlrssssASALFSAvqvkppssppvrvkalftknpgsgtlknsnsntnpnpnpmasnprwaqktvtlpplrrgchlitPKIVKEIAQDLSEFKCGLAHLFLLHTSasltinenydsdvrddTETFLNkivpegrsaswkhtlegpddmpahikssmfgctltipitdgqlnmgtwqgiwlcehrdaptprkVVITLNGI
Flexible Loop (DISEMBL)
MQLQLRSSSSASALFSavqvkppssppvrVKALFTknpgsgtlknsnsntnpnpnpmasnprWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNkivpegrsaswkhtlEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLcehrdaptprkvvitlngi
Low Complexity Region (SEG)
MqlqlrssssasalfsavqvkppssppvrvkALFTKNPGSGTLKnsnsntnpnpnpmasnpRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI
Disordered region (IsUnstruct)
****************************************************************QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP*******************HIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVIT****
Disordered Region (DISOPRED)
**************FSAVQVKPPSSPPVRVK*******************************WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI
Disordered Region (DISEMBL)
**************************PVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI
Disordered Region (DISPRO)
***********************************************************NPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLQLRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
P0AF48	138	UPF0047 protein YjbQ OS=E	N/A	no	0.673	0.985	0.496	1e-33
P0AF49	138	UPF0047 protein YjbQ OS=E	N/A	no	0.673	0.985	0.496	1e-33
O14155	142	UPF0047 protein C4A8.02c	yes	no	0.668	0.950	0.492	2e-32
P0A2L1	138	UPF0047 protein YjbQ OS=S	yes	no	0.673	0.985	0.517	1e-28
P0A2L2	138	UPF0047 protein YjbQ OS=S	N/A	no	0.673	0.985	0.517	1e-28
P74125	147	UPF0047 protein sll1880 O	N/A	no	0.693	0.952	0.413	5e-24
Q58481	138	UPF0047 protein MJ1081 OS	yes	no	0.559	0.818	0.430	1e-17
O05243	132	UPF0047 protein YugU OS=B	yes	no	0.549	0.840	0.352	1e-12
O28229	126	UPF0047 protein AF_2050 O	yes	no	0.485	0.777	0.342	5e-10
O26865	143	UPF0047 protein MTH_771 O	yes	no	0.618	0.874	0.287	2e-09

>sp|P0AF48|YJBQ_ECOLI UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 3/139 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
            D E F  + VP+  + +++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQGIW
Sbjct: 61  HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIW 118

Query: 183 LCEHRDAPTPRKVVITLNG 201
           L EHR     R+++ TL G
Sbjct: 119 LGEHRIHGGSRRIIATLQG 137

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AF49|YJBQ_ECO57 UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 3/139 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
            D E F  + VP+  + +++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQGIW
Sbjct: 61  HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIW 118

Query: 183 LCEHRDAPTPRKVVITLNG 201
           L EHR     R+++ TL G
Sbjct: 119 LGEHRIHGGSRRIIATLQG 137

Escherichia coli O157:H7 (taxid: 83334)

>sp|O14155|YE72_SCHPO UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 96/138 (69%), Gaps = 3/138 (2%)

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           Q+ +TL    +G ++IT  +VK++ + L  F  G  + F+ HTSA+LTINEN+D+D R D
Sbjct: 5   QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRAD 63

Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLC 184
               L+KIVPE  SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ I L 
Sbjct: 64  MNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDIQLA 121

Query: 185 EHRDAPTPRKVVITLNGI 202
           E R  P  R +V T+ G+
Sbjct: 122 EFRRQPHSRTIVCTIIGL 139

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P0A2L1|YJBQ_SALTY UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 94/139 (67%), Gaps = 3/139 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
            D E    K VP+  +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQGIW
Sbjct: 61  ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIW 118

Query: 183 LCEHRDAPTPRKVVITLNG 201
           L EHR    PRK++ TL G
Sbjct: 119 LGEHRIHGGPRKIIATLQG 137

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|P0A2L2|YJBQ_SALTI UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 94/139 (67%), Gaps = 3/139 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
            D E    K VP+  +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQGIW
Sbjct: 61  ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIW 118

Query: 183 LCEHRDAPTPRKVVITLNG 201
           L EHR    PRK++ TL G
Sbjct: 119 LGEHRIHGGPRKIIATLQG 137

Salmonella typhi (taxid: 90370)

>sp|P74125|Y1880_SYNY3 UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1880 PE=3 SV=1

 Score =  110 bits (276), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 88/145 (60%), Gaps = 5/145 (3%)

Query: 58  ASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENY 117
           A+  R  Q+ + +    +  H    KI + + Q  S  K GL  +F+ HTSASL I EN 
Sbjct: 5   AATFRQHQEILVIATQGKSLHNFNSKI-QAVVQH-SGVKTGLCTVFVRHTSASLIIQENA 62

Query: 118 DSDVRDDTETFLNKIVPE-GRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 176
           D DV  D   F  ++VPE GR   ++H+ EG DDMPAHI+S++   +  IPI +G+L +G
Sbjct: 63  DPDVLTDLAIFFAQLVPEDGRR--YRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLG 120

Query: 177 TWQGIWLCEHRDAPTPRKVVITLNG 201
           TWQG++L EHR  P  R+V++ ++G
Sbjct: 121 TWQGVFLWEHRQRPHQREVIVHVSG 145

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q58481|Y1081_METJA UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1081 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 10/123 (8%)

Query: 80  ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139
           ITP I+  I++  S+ K G+A +++ HT+A +TINEN D  V+ D   FL+ ++P+    
Sbjct: 23  ITPYIISAISE--SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPK---- 76

Query: 140 SWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVIT 198
           +W  T LEG  D  AHIKSS+ GC+ TI I DG+  +GTWQGI+  E  D P  R+  + 
Sbjct: 77  NWNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQGIFFAEF-DGPRRREFYVK 133

Query: 199 LNG 201
           + G
Sbjct: 134 IIG 136

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O05243|YUGU_BACSU UPF0047 protein YugU OS=Bacillus subtilis (strain 168) GN=yugU PE=3 SV=2

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 11/122 (9%)

Query: 84  IVKEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW 141
           I +E+   L E     G A ++  HT+A +TINEN D DV+ D     +++ P      W
Sbjct: 18  ITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYP------W 71

Query: 142 KHTLEG--PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITL 199
           +H L+     +  AH+KSS  G +  + + +G+L +GTWQGI+ CE  D P  R   I +
Sbjct: 72  EHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEF-DGPRTRTCYIKM 130

Query: 200 NG 201
            G
Sbjct: 131 MG 132

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O28229|Y2050_ARCFU UPF0047 protein AF_2050 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2050 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 7/105 (6%)

Query: 94  EFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT-LEGPDDMP 152
           E + GL  ++  HT+ +L INE  +  + +D   F+ K+VP G+   +KH  L+   D  
Sbjct: 25  ESRDGLVLVYTPHTTTALVINEG-ERGLLEDILEFMEKLVPYGKG--YKHDRLDSNAD-- 79

Query: 153 AHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVI 197
           AH+K+++ G ++ +P+  G+L +GTWQ I   E  D P  R+V++
Sbjct: 80  AHLKATLLGNSVVVPVESGKLALGTWQRILFLEF-DGPRTRRVIV 123

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

>sp|O26865|Y771_METTH UPF0047 protein MTH_771 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_771 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 73/132 (55%), Gaps = 7/132 (5%)

Query: 72  PLR--RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFL 129
           PLR  R   LI    +     + S  + G+ ++F  H+++++ INEN +S +  D E+ L
Sbjct: 15  PLRTSRRVELIDITSMVSGVLESSGIRNGILNVFSRHSTSAIFINEN-ESRLLSDIESML 73

Query: 130 NKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDA 189
              VP    AS+ H     ++  +H+++ + G + T+P+ +G +++GTWQ I+  E  D 
Sbjct: 74  EGTVPV--DASYGHNAI-DNNADSHLRAVLLGGSQTVPVINGSMDLGTWQSIFFAE-LDG 129

Query: 190 PTPRKVVITLNG 201
           P  R++ +++ G
Sbjct: 130 PRNRRIRVSVAG 141

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
255539386	195	conserved hypothetical protein [Ricinus	0.930	0.964	0.723	7e-74
224065613	163	predicted protein [Populus trichocarpa]	0.801	0.993	0.772	3e-73
449455657	185	PREDICTED: UPF0047 protein C4A8.02c-like	0.881	0.962	0.737	4e-73
225457713	236	PREDICTED: uncharacterized protein LOC10	0.886	0.758	0.727	5e-73
118481865	147	unknown [Populus trichocarpa]	0.712	0.979	0.895	1e-72
297845088	218	hypothetical protein ARALYDRAFT_472344 [	0.900	0.834	0.676	2e-72
351723809	179	uncharacterized protein LOC100500593 [Gl	0.846	0.955	0.716	5e-71
297745635	148	unnamed protein product [Vitis vinifera]	0.702	0.959	0.880	5e-71
356521568	175	PREDICTED: UPF0047 protein yjbQ-like [Gl	0.702	0.811	0.880	6e-71
357475211	173	hypothetical protein MTR_4g084120 [Medic	0.722	0.843	0.842	2e-70

>gi|255539386|ref|XP_002510758.1| conserved hypothetical protein [Ricinus communis] gi|223551459|gb|EEF52945.1| conserved hypothetical protein [Ricinus communis]

 Score =  281 bits (720), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 144/199 (72%), Positives = 155/199 (77%), Gaps = 11/199 (5%)

Query: 9   SSASALFSAVQVKP----PSSPPV-RVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRW 63
           +SA   FS+   KP     S+ PV RV +L+T  P S T      N + N     S  +W
Sbjct: 3   ASAHLWFSSSAPKPVWLSASAAPVPRVNSLYTAKPSSLT------NDSNNSMATTSTSKW 56

Query: 64  AQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
           AQKTVTL P RRGCHLIT KI+ EI  DLSEFKCGLAHLF+ HTSASLTINENYDSDVRD
Sbjct: 57  AQKTVTLSPHRRGCHLITSKILNEIGSDLSEFKCGLAHLFIQHTSASLTINENYDSDVRD 116

Query: 124 DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWL 183
           DTETFLNKIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC LTIPIT+G+LNMGTWQGIWL
Sbjct: 117 DTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCQLTIPITNGKLNMGTWQGIWL 176

Query: 184 CEHRDAPTPRKVVITLNGI 202
           CEHRD PT RKVVITLNGI
Sbjct: 177 CEHRDHPTARKVVITLNGI 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065613|ref|XP_002301884.1| predicted protein [Populus trichocarpa] gi|222843610|gb|EEE81157.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 136/176 (77%), Positives = 146/176 (82%), Gaps = 14/176 (7%)

Query: 28  VRVKALFTKNPGSGTLKNSNSNTNPNPNPMA-SNPRWAQKTVTLPPLRRGCHLITPKIVK 86
           +RV +L+T  P                + MA S P+WAQKT+TLPP RRGCHLITPKI+ 
Sbjct: 1   LRVSSLYTAKPSFS-------------DSMATSAPKWAQKTITLPPHRRGCHLITPKILN 47

Query: 87  EIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLE 146
           EI  DLSEFKCGLAHLFL HTSASLTINENYDSDVRDDTETFLNKIVPEGRSA WKHTLE
Sbjct: 48  EIGSDLSEFKCGLAHLFLHHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLE 107

Query: 147 GPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 202
           GPDDMPAHIKSSMFGC+LTIPITDG+LNMGTWQGIWLCEHRD PT RKVV+TLNGI
Sbjct: 108 GPDDMPAHIKSSMFGCSLTIPITDGKLNMGTWQGIWLCEHRDHPTARKVVVTLNGI 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455657|ref|XP_004145568.1| PREDICTED: UPF0047 protein C4A8.02c-like isoform 1 [Cucumis sativus]

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 152/179 (84%), Gaps = 1/179 (0%)

Query: 24  SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPK 83
           ++ P+RVK L + N  +G    +  ++NP+    A+ P+WAQKTVTL P RRGCHLITPK
Sbjct: 8   AAQPLRVKLLRSNNSSTGNPSATAGSSNPS-FMAAAGPKWAQKTVTLSPHRRGCHLITPK 66

Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143
           I+KEI QDLSEFKCGLAH+FL HTSASLTINENYDSDV++DTETFLNKIVPEG SA WKH
Sbjct: 67  IMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPEGTSAPWKH 126

Query: 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 202
           TLEGPDDMPAHIKSS+FGC LTIPIT+G+LNMGTWQGIWLCEHRD PT R +V+TLNGI
Sbjct: 127 TLEGPDDMPAHIKSSLFGCALTIPITNGKLNMGTWQGIWLCEHRDHPTARNIVVTLNGI 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457713|ref|XP_002277414.1| PREDICTED: uncharacterized protein LOC100252976 isoform 1 [Vitis vinifera]

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 136/187 (72%), Positives = 152/187 (81%), Gaps = 8/187 (4%)

Query: 17  AVQVKPP-SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRR 75
           ++  KPP +S  +RVK+L+T         + N  T+         P+WAQKT+TLPP RR
Sbjct: 57  SLGAKPPLTSHQIRVKSLYTPT-------SFNDPTDSTSMAAIPAPKWAQKTITLPPQRR 109

Query: 76  GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPE 135
           GCH ITPKI+KEI QDLS FKCGLAHLF+ HTSASLTINENYDSDVRDDTETFL+KIVPE
Sbjct: 110 GCHHITPKILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDSDVRDDTETFLSKIVPE 169

Query: 136 GRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKV 195
           GRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDGQLNMGTWQGIWLCEHRD  T RKV
Sbjct: 170 GRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGQLNMGTWQGIWLCEHRDRATARKV 229

Query: 196 VITLNGI 202
           V+TLNG+
Sbjct: 230 VVTLNGV 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481865|gb|ABK92869.1| unknown [Populus trichocarpa]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/144 (89%), Positives = 135/144 (93%)

Query: 59  SNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYD 118
           S P+WAQKT+TLPP RRGCHLITPKI+ EI  DLSEFKCGLAHLFL HTSASLTINENYD
Sbjct: 4   SAPKWAQKTITLPPHRRGCHLITPKILNEIGSDLSEFKCGLAHLFLHHTSASLTINENYD 63

Query: 119 SDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTW 178
           SDVRDDTETFLNKIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDG+LNMGTW
Sbjct: 64  SDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGKLNMGTW 123

Query: 179 QGIWLCEHRDAPTPRKVVITLNGI 202
           QGIWLCEHRD PT RKVV+TLNGI
Sbjct: 124 QGIWLCEHRDHPTARKVVVTLNGI 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845088|ref|XP_002890425.1| hypothetical protein ARALYDRAFT_472344 [Arabidopsis lyrata subsp. lyrata] gi|297336267|gb|EFH66684.1| hypothetical protein ARALYDRAFT_472344 [Arabidopsis lyrata subsp. lyrata]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/198 (67%), Positives = 156/198 (78%), Gaps = 16/198 (8%)

Query: 5   LRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWA 64
           L++  S++ LFS V        P+RV+++ T          +N  T+      +S P+WA
Sbjct: 37  LKAMQSSTILFSGVV-------PLRVRSVLTP---------ANPATDRASMASSSGPKWA 80

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           QKT+TLPPLRRGCHLITPKIVKEI QDLS+F CGLAH+FL HTSASLTINENYD DV+ D
Sbjct: 81  QKTITLPPLRRGCHLITPKIVKEIGQDLSDFNCGLAHVFLQHTSASLTINENYDPDVQAD 140

Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLC 184
           TETFLN+IVPEG SA W+HT+EGPDDMPAHIKSSMFGC LTIPIT G+LNMGTWQGIWLC
Sbjct: 141 TETFLNRIVPEGNSAPWRHTMEGPDDMPAHIKSSMFGCQLTIPITKGKLNMGTWQGIWLC 200

Query: 185 EHRDAPTPRKVVITLNGI 202
           EHRDAPT R+VV+TLNGI
Sbjct: 201 EHRDAPTARRVVVTLNGI 218

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723809|ref|NP_001236524.1| uncharacterized protein LOC100500593 [Glycine max] gi|255630716|gb|ACU15719.1| unknown [Glycine max]

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 129/180 (71%), Positives = 146/180 (81%), Gaps = 9/180 (5%)

Query: 23  PSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITP 82
           P+  PVRVK+L T         N  +  +P      + P+WAQKT+TLPPL+RGCHLIT 
Sbjct: 9   PAKVPVRVKSLHT---------NPATVNDPTSTAKVAAPKWAQKTITLPPLKRGCHLITS 59

Query: 83  KIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK 142
           KIVKE+ Q+LSE++CGLAHLFL HTSASLTINENYD DVRDDTETFLN +VPEG SA WK
Sbjct: 60  KIVKEVRQELSEYQCGLAHLFLHHTSASLTINENYDYDVRDDTETFLNGMVPEGPSAPWK 119

Query: 143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 202
           HTLEGPDDMPAHIKSSMFGC L IPI++G+LNMGTWQGIWLCEHRD PTPR VV+TLNGI
Sbjct: 120 HTLEGPDDMPAHIKSSMFGCALMIPISNGKLNMGTWQGIWLCEHRDYPTPRTVVVTLNGI 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745635|emb|CBI40800.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 133/142 (93%)

Query: 61  PRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           P+WAQKT+TLPP RRGCH ITPKI+KEI QDLS FKCGLAHLF+ HTSASLTINENYDSD
Sbjct: 7   PKWAQKTITLPPQRRGCHHITPKILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDSD 66

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQG 180
           VRDDTETFL+KIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDGQLNMGTWQG
Sbjct: 67  VRDDTETFLSKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGQLNMGTWQG 126

Query: 181 IWLCEHRDAPTPRKVVITLNGI 202
           IWLCEHRD  T RKVV+TLNG+
Sbjct: 127 IWLCEHRDRATARKVVVTLNGV 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521568|ref|XP_003529426.1| PREDICTED: UPF0047 protein yjbQ-like [Glycine max]

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 134/142 (94%)

Query: 61  PRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           P+WAQKTV+LPPLRRGCHL+T KIVKEI QDLS FKCGLAHLFL HTSASLTINENYDSD
Sbjct: 34  PKWAQKTVSLPPLRRGCHLVTSKIVKEIEQDLSGFKCGLAHLFLQHTSASLTINENYDSD 93

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQG 180
           VR+DTETFLN+IVPEG SA WKHTLEGPDDMPAHIKSSMFGCTLTIPIT+G+LNMGTWQG
Sbjct: 94  VREDTETFLNRIVPEGSSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITNGKLNMGTWQG 153

Query: 181 IWLCEHRDAPTPRKVVITLNGI 202
           IWLCEHRD PT R+VV+TLNGI
Sbjct: 154 IWLCEHRDHPTSRRVVVTLNGI 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475211|ref|XP_003607891.1| hypothetical protein MTR_4g084120 [Medicago truncatula] gi|85719357|gb|ABC75362.1| Protein of unknown function UPF0047 [Medicago truncatula] gi|355508946|gb|AES90088.1| hypothetical protein MTR_4g084120 [Medicago truncatula]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/146 (84%), Positives = 133/146 (91%)

Query: 57  MASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINEN 116
           MA+ P+WAQKT+ LPP +RGCHL+TPKI KEI QDLS FKCGLAHLFL HTSASLTINEN
Sbjct: 28  MATAPKWAQKTIALPPYKRGCHLVTPKIAKEIEQDLSGFKCGLAHLFLQHTSASLTINEN 87

Query: 117 YDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 176
           YD+DVRDDTETFLN+IVPEG SA WKHTLEG DDMPAHIKSSMFGC LTIPITDG+LNMG
Sbjct: 88  YDTDVRDDTETFLNRIVPEGPSAPWKHTLEGHDDMPAHIKSSMFGCALTIPITDGKLNMG 147

Query: 177 TWQGIWLCEHRDAPTPRKVVITLNGI 202
           TWQGIWLCEHRD PT R+VV+TLNGI
Sbjct: 148 TWQGIWLCEHRDHPTSRRVVVTLNGI 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:505006137	217	AT1G21065 "AT1G21065" [Arabido	0.698	0.649	0.829	5.2e-65
FB|FBgn0263355	687	CG31688 [Drosophila melanogast	0.673	0.197	0.568	4.7e-41
UNIPROTKB|Q47W13	139	CPS_4360 "Putative uncharacter	0.678	0.985	0.510	1.9e-35
TIGR_CMR|CPS_4360	139	CPS_4360 "conserved hypothetic	0.678	0.985	0.510	1.9e-35
UNIPROTKB|Q60BB8	139	MCA0559 "Putative uncharacteri	0.678	0.985	0.525	1.1e-34
UNIPROTKB|G4MUS6	210	MGG_01675 "Uncharacterized pro	0.831	0.8	0.436	1.5e-33
UNIPROTKB|Q9KUY5	139	VC_0373 "Putative uncharacteri	0.678	0.985	0.517	3.2e-33
TIGR_CMR|VC_0373	139	VC_0373 "conserved hypothetica	0.678	0.985	0.517	3.2e-33
UNIPROTKB|Q88B14	141	PSPTO_0219 "Uncharacterized pr	0.678	0.971	0.510	4.1e-33
UNIPROTKB|Q48C07	141	PSPPH_5002 "Uncharacterized pr	0.678	0.971	0.510	1.1e-32

TAIR|locus:505006137 AT1G21065 "AT1G21065" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 117/141 (82%), Positives = 131/141 (92%)

Query:    62 RWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDV 121
             +WAQKT+TLPPLRRGCHLITPKI+KEI +DLS+F CGLAH+FL HTSASLTINENYD DV
Sbjct:    77 KWAQKTITLPPLRRGCHLITPKILKEIREDLSDFNCGLAHVFLQHTSASLTINENYDPDV 136

Query:   122 RDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGI 181
             + DTETFLN+IVPEG SA W+HT+EGPDDMPAHIKSSMFGC LTIPIT G+L+MGTWQGI
Sbjct:   137 QADTETFLNRIVPEGNSAPWRHTMEGPDDMPAHIKSSMFGCQLTIPITKGKLSMGTWQGI 196

Query:   182 WLCEHRDAPTPRKVVITLNGI 202
             WLCEHRDAPT R+VV+TLNGI
Sbjct:   197 WLCEHRDAPTARRVVVTLNGI 217

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

FB|FBgn0263355 CG31688 [Drosophila melanogaster (taxid:7227)]

 Score = 440 (159.9 bits), Expect = 4.7e-41, P = 4.7e-41
 Identities = 79/139 (56%), Positives = 105/139 (75%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q+ + L P  RG HL+T +I++++ + L+ F  GL H+ +LHTSASL +NE++D DVR
Sbjct:    37 WFQRKINLRPQHRGVHLVTEEILRQMPE-LAHFSVGLCHMQILHTSASLALNESWDPDVR 95

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
             DD E  LNKIVPEG    ++H+ EGPDDMPAH+K+   G +LTIPITDG+L++GTWQG+W
Sbjct:    96 DDMEMMLNKIVPEG--LPYRHSCEGPDDMPAHVKACFLGSSLTIPITDGKLSLGTWQGVW 153

Query:   183 LCEHRDAPTPRKVVITLNG 201
             LCEHRD    RK+VITL G
Sbjct:   154 LCEHRDQAGSRKLVITLTG 172

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q47W13 CPS_4360 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 71/139 (51%), Positives = 100/139 (71%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  +TL   +RG HLIT +++K++  +L++  CG+ HLF+ H+SAS+T+NEN D  VR
Sbjct:     2 WYQTEITLKARKRGFHLITDEVLKQL-HELNKVNCGILHLFIKHSSASITLNENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
              D E   N  VPE R+  ++HT EG DDMPAHIK+S+ G +L++PI+ GQLN+G WQGI+
Sbjct:    61 SDMEAHFNHFVPE-RAPYYQHTYEGDDDMPAHIKASLLGNSLSLPISHGQLNIGIWQGIY 119

Query:   183 LCEHRDAPTPRKVVITLNG 201
             L EHRD  + R +V T+NG
Sbjct:   120 LGEHRDHASNRTIVATING 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4360 CPS_4360 "conserved hypothetical protein TIGR00149" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 71/139 (51%), Positives = 100/139 (71%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  +TL   +RG HLIT +++K++  +L++  CG+ HLF+ H+SAS+T+NEN D  VR
Sbjct:     2 WYQTEITLKARKRGFHLITDEVLKQL-HELNKVNCGILHLFIKHSSASITLNENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
              D E   N  VPE R+  ++HT EG DDMPAHIK+S+ G +L++PI+ GQLN+G WQGI+
Sbjct:    61 SDMEAHFNHFVPE-RAPYYQHTYEGDDDMPAHIKASLLGNSLSLPISHGQLNIGIWQGIY 119

Query:   183 LCEHRDAPTPRKVVITLNG 201
             L EHRD  + R +V T+NG
Sbjct:   120 LGEHRDHASNRTIVATING 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q60BB8 MCA0559 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 73/139 (52%), Positives = 99/139 (71%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W QKT+ L P  RG HL+T +I   + + L+ F+ G+AH F+ HTSASLTINEN D+DVR
Sbjct:     2 WFQKTIVLKPRSRGFHLVTAEITANLPE-LARFRQGIAHFFIQHTSASLTINENADADVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
              D E +L   VPE R+  ++HTLEG DDMPAHIK+ + G ++T+P+  G+L +GTWQGI+
Sbjct:    61 SDLEAYLLAQVPE-RAPYYRHTLEGDDDMPAHIKAVLVGNSVTVPLRQGRLALGTWQGIY 119

Query:   183 LCEHRDAPTPRKVVITLNG 201
             L EHR+    R +V TL+G
Sbjct:   120 LGEHRNHGGSRSLVATLHG 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MUS6 MGG_01675 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 76/174 (43%), Positives = 104/174 (59%)

Query:    32 ALFTKNPGSGTLKXXXXXXXXXXXXXXXXXRWAQKTVTLPPLRRGCHLITPKIVKEIAQD 91
             AL T N    T+                   W QK  TLP   RG +LIT  +VKEI + 
Sbjct:    36 ALLTGNLSRLTVSSSANRPSSYTSHPSAKMSWFQKQFTLPAKSRGSYLITDTVVKEIPE- 94

Query:    92 LSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP----EGRSASWKHTLEG 147
             +  +K GL +LF+ HTS +L++NEN+D DVR+D    L++I P    +G S  + H+ EG
Sbjct:    95 IKNYKVGLLNLFVQHTSCALSLNENWDEDVREDMSNALDRIAPAAGPKGESL-YLHSAEG 153

Query:   148 PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 201
             PDDMPAHIKS++ G ++TIPI++G+L  GTWQGIW  E R +   RK+V T+ G
Sbjct:   154 PDDMPAHIKSALVGASVTIPISNGKLATGTWQGIWYLEFRASKHQRKIVATIQG 207

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0045132 "meiotic chromosome segregation" evidence=ISS

UNIPROTKB|Q9KUY5 VC_0373 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 72/139 (51%), Positives = 93/139 (66%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q T+ L P  RG HLIT +I +++ Q +     GL HLF+ HTSASLTINEN D  VR
Sbjct:     2 WHQHTIQLRPRARGFHLITDEIEQQLPQ-IKRLNVGLLHLFVQHTSASLTINENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
              D E   N   PEG +  ++H  EG DDMPAHIKSS+ GC+++IPI  G+L +GTWQGI+
Sbjct:    61 QDMEAHFNHAAPEG-APYYRHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQGIY 119

Query:   183 LCEHRDAPTPRKVVITLNG 201
             L EHR+    R+V+ T+ G
Sbjct:   120 LGEHRNHGGIRRVIATIQG 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0373 VC_0373 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 72/139 (51%), Positives = 93/139 (66%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q T+ L P  RG HLIT +I +++ Q +     GL HLF+ HTSASLTINEN D  VR
Sbjct:     2 WHQHTIQLRPRARGFHLITDEIEQQLPQ-IKRLNVGLLHLFVQHTSASLTINENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
              D E   N   PEG +  ++H  EG DDMPAHIKSS+ GC+++IPI  G+L +GTWQGI+
Sbjct:    61 QDMEAHFNHAAPEG-APYYRHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQGIY 119

Query:   183 LCEHRDAPTPRKVVITLNG 201
             L EHR+    R+V+ T+ G
Sbjct:   120 LGEHRNHGGIRRVIATIQG 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q88B14 PSPTO_0219 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 71/139 (51%), Positives = 94/139 (67%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  + L    RG HL+T +IV  + Q L + + GL H++L HTSASLT+NEN D  VR
Sbjct:     2 WHQSRIALRARSRGFHLVTDEIVAGLPQ-LRDCRVGLLHVWLQHTSASLTVNENADPAVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
              D E F N++VP+G    ++H  EGPDD+PAH K+S+ GC L +P+T G+L +GTWQGI+
Sbjct:    61 RDFERFFNRLVPQGVDG-YEHDDEGPDDLPAHFKASLLGCQLFLPVTAGRLALGTWQGIY 119

Query:   183 LCEHRDAPTPRKVVITLNG 201
             L EHRDA   R V+ TL G
Sbjct:   120 LGEHRDAGGSRNVLATLQG 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48C07 PSPPH_5002 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 71/139 (51%), Positives = 93/139 (66%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  + L    RG HL+T +IV  +   L + + GL H++L HTSASLTINEN D  VR
Sbjct:     2 WHQSRIALRARPRGFHLVTDEIVAGLPP-LRDCRVGLLHVWLQHTSASLTINENADPAVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
              D E F N++VP+G    ++H  EGPDD+PAH K+S+ GC L +P+T G+L +GTWQGI+
Sbjct:    61 RDFERFFNRLVPQGVDG-YEHDDEGPDDLPAHFKASLLGCQLVLPVTAGRLALGTWQGIY 119

Query:   183 LCEHRDAPTPRKVVITLNG 201
             L EHRDA   R V+ TL G
Sbjct:   120 LGEHRDAGGSRNVLATLQG 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0A2L1	YJBQ_SALTY	No assigned EC number	0.5179	0.6732	0.9855	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam01894	118	pfam01894, UPF0047, Uncharacterized protein family	7e-60
COG0432	137	COG0432, COG0432, Uncharacterized conserved protei	6e-55
TIGR00149	132	TIGR00149, TIGR00149_YjbQ, secondary thiamine-phos	1e-41

>gnl|CDD|216769 pfam01894, UPF0047, Uncharacterized protein family UPF0047

 Score =  182 bits (465), Expect = 7e-60
 Identities = 63/123 (51%), Positives = 89/123 (72%), Gaps = 5/123 (4%)

Query: 78  HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGR 137
             IT ++ + + +  S  K GL H+F+ HT+ASLTINEN D DVR+D E FLN++VPE  
Sbjct: 1   IDITDEVREAVEE--SGVKNGLVHVFVPHTTASLTINENADPDVREDLERFLNRLVPED- 57

Query: 138 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVI 197
              ++H  EGPD+MPAH+KSS+ G +LT+P+T+G+L +GTWQGI+LCE    P  R+VV+
Sbjct: 58  -DPYRHNEEGPDNMPAHLKSSLLGPSLTVPVTNGRLALGTWQGIYLCEFDG-PRSRRVVV 115

Query: 198 TLN 200
           T+ 
Sbjct: 116 TIL 118

This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important. Length = 118

>gnl|CDD|223509 COG0432, COG0432, Uncharacterized conserved protein [Function unknown]

 Score =  170 bits (434), Expect = 6e-55
 Identities = 60/142 (42%), Positives = 91/142 (64%), Gaps = 6/142 (4%)

Query: 61  PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDS 119
            +  QK +T+   RR     IT ++ K + +  S  K GL  +F+ HT+A+LTINE  + 
Sbjct: 1   MKVYQKELTVSTKRRIEFVDITDEVEKFVRE--SGVKNGLLLVFVPHTTAALTINEA-EP 57

Query: 120 DVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            +++D E FL K+VPEG  A ++H  EGPD+ PAH+K+S+ G +LTIP+ +G+L +GTWQ
Sbjct: 58  GLKEDIERFLEKLVPEG--AGYRHDEEGPDNAPAHLKASLLGPSLTIPVINGRLVLGTWQ 115

Query: 180 GIWLCEHRDAPTPRKVVITLNG 201
           GI+L E       R+VV+ + G
Sbjct: 116 GIFLVEFDGPRHRRRVVVKIIG 137

Length = 137

>gnl|CDD|129253 TIGR00149, TIGR00149_YjbQ, secondary thiamine-phosphate synthase enzyme

 Score =  136 bits (345), Expect = 1e-41
 Identities = 53/137 (38%), Positives = 81/137 (59%), Gaps = 6/137 (4%)

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           Q+ +     R     IT +I   +    S  K GL  +++ HT+ASLTINEN D DV  D
Sbjct: 1   QELLLKTTKRVELIDITSEIEAVLQS--SGVKDGLLLVYVPHTTASLTINENADPDVLHD 58

Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLC 184
            E F  ++VP+    +++H  EG D+M AHIKSS+ G +  +P+ +G+L +GTWQGI+  
Sbjct: 59  IERFFERLVPDD--GNYEHD-EGDDNMDAHIKSSLLGTSQHVPVENGRLQLGTWQGIFFA 115

Query: 185 EHRDAPTPRKVVITLNG 201
           E  D P  R++++ + G
Sbjct: 116 EF-DGPRTRRIIVKVQG 131

Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown [Unknown function, Enzymes of unknown specificity]. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
COG0432	137	Uncharacterized conserved protein [Function unknow	100.0
TIGR00149	132	TIGR00149_YbjQ secondary thiamine-phosphate syntha	100.0
PF01894	118	UPF0047: Uncharacterised protein family UPF0047; I	100.0
KOG3267	138	consensus Uncharacterized conserved protein [Funct	100.0

>COG0432 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.2e-56  Score=360.71  Aligned_cols=135  Identities=45%  Similarity=0.770  Sum_probs=130.1

Q ss_pred             CeEEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCC
Q 028918           61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (202)
Q Consensus        61 m~~~~~titv~T~~r-~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~  139 (202)
                      |++++++|+|+|++| +++|||++|+++|++  |||++|+|+||++||||||+||| +||+|++||+++|++|+|++.  
T Consensus         1 m~~~~~~l~v~T~~r~~~vdIT~ev~~~v~e--sgv~~Gl~~vf~~HtTaal~inE-~ep~l~~Di~~~l~~lvP~~~--   75 (137)
T COG0432           1 MKVYQKELTVSTKRRIEFVDITDEVEKFVRE--SGVKNGLLLVFVPHTTAALTINE-AEPGLKEDIERFLEKLVPEGA--   75 (137)
T ss_pred             CceEEEEEEEeccCccceEEchHHHHHHHHH--cCCccceEEEEecCcceEEEEec-CCCcHHHHHHHHHHHhCCCCC--
Confidence            889999999999998 999999999999999  99999999999999999999999 799999999999999999984  


Q ss_pred             CcccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCC-eEEEEEEec
Q 028918          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTP-RKVVITLNG  201 (202)
Q Consensus       140 ~Y~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~-R~V~v~v~G  201 (202)
                      .|+|+.+|+|||+|||||+|+|+|++|||.||+|.|||||+|||+|| ||||. |+|+++++|
T Consensus        76 ~Y~H~~~~~Dn~~aHlkasllG~S~~iPv~~GrL~LGTWQ~I~~~E~-dg~r~~R~v~v~i~g  137 (137)
T COG0432          76 GYRHDEEGPDNAPAHLKASLLGPSLTIPVINGRLVLGTWQGIFLVEF-DGPRHRRRVVVKIIG  137 (137)
T ss_pred             CcccccCCCCchHHHHHHHhcCceEEEEEeCCeEceecccEEEEEEe-cCCCCccEEEEEEcC
Confidence            79999999999999999999999999999999999999999999999 56665 999999987

>TIGR00149 TIGR00149_YbjQ secondary thiamine-phosphate synthase enzyme

Probab=100.00  E-value=1.2e-53  Score=342.91  Aligned_cols=130  Identities=41%  Similarity=0.731  Sum_probs=123.5

Q ss_pred             EEEecCCCC-eEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCcccCC
Q 028918           67 TVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTL  145 (202)
Q Consensus        67 titv~T~~r-~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H~~  145 (202)
                      ++++.|.++ +++|||++|+++|++  ||+++|+|+||++||||||++|||+||+++.||+++|++|+|++.  +|+|+ 
T Consensus         2 ~~~~~t~~~~~~~dIT~~V~~~v~~--s~i~~G~~~v~~~HTTa~l~inE~~dp~l~~Dl~~~l~~lvP~~~--~y~H~-   76 (132)
T TIGR00149         2 ELLLKTTKRVELIDITSEIEAVLQS--SGVKDGLLLVYVPHTTASLTINENADPDVLHDIERFFERLVPDDG--NYEHD-   76 (132)
T ss_pred             EEEEEcCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEecCCCccHHHHHHHHHHHHCCCCC--Ccccc-
Confidence            467777655 999999999999999  999999999999999999999999999999999999999999874  69998 


Q ss_pred             CCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028918          146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  202 (202)
Q Consensus       146 eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  202 (202)
                      +++|||+|||||+|+|+|++|||.||+|.||+||+|||||| ||||+|+|+|+++||
T Consensus        77 ~~~~n~~aHlka~L~G~s~tipi~dG~L~LGtwQ~I~l~E~-Dg~r~R~v~v~i~Ge  132 (132)
T TIGR00149        77 EGDDNMDAHIKSSLLGTSQHVPVENGRLQLGTWQGIFFAEF-DGPRTRRIIVKVQGE  132 (132)
T ss_pred             CCCCCHHHHHHHHhcCccEEEEEeCCEEcccCccEEEEEEC-CCCCCcEEEEEEEeC
Confidence            89999999999999999999999999999999999999999 699999999999997

Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown.

>PF01894 UPF0047: Uncharacterised protein family UPF0047; InterPro: IPR001602 This family contains small uncharacterised proteins of 14 to 16 kDa mainly from bacteria although the signatures also occur in a hypothetical protein from archaea and from yeast

Probab=100.00  E-value=7.3e-52  Score=326.99  Aligned_cols=118  Identities=47%  Similarity=0.833  Sum_probs=105.2

Q ss_pred             EeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCcccCCCCCCCchhhhhh
Q 028918           78 HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS  157 (202)
Q Consensus        78 ~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H~~eG~dn~~AHlks  157 (202)
                      ||||++|+++|++  ||+++|+|+||++||||||++|||+||++++||+++|++|+|++.  +|+|+.+|++||+||+||
T Consensus         1 idIT~~V~~~v~~--s~i~~Gl~~v~~~HTTaal~inE~~dp~v~~Dl~~~l~~lvP~~~--~y~H~~~~~~n~~aHlks   76 (118)
T PF01894_consen    1 IDITEEVREAVEE--SGIRNGLVHVFVPHTTAALTINENADPDVRRDLLEALERLVPEDD--PYRHNEEGPDNAPAHLKS   76 (118)
T ss_dssp             EE-HHHHHHHHHH--HT-SEEEEEEEESSSSEEEEEEESSSHHHHHHHHHHHHHHS-TTS--T-GGGCTT-STHHHHHHH
T ss_pred             CcchHHHHHHHHH--hCCcceEEEEEeCCCeEEEEEeecCChhHHHhHHHHHHHhCCCCC--ceEeCCccccCccHHHHH
Confidence            7999999999999  999999999999999999999999999999999999999999984  899999999999999999


Q ss_pred             hhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028918          158 SMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN  200 (202)
Q Consensus       158 sLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~  200 (202)
                      +|+|+|++|||.||+|.||+||+|||+|| ||||+|+|+|+||
T Consensus        77 ~l~G~S~~vpv~~G~L~LGtwQ~I~l~E~-dgpr~R~v~v~i~  118 (118)
T PF01894_consen   77 SLIGPSLTVPVHDGKLALGTWQGIYLVEF-DGPRERTVVVQIM  118 (118)
T ss_dssp             HHH-SEEEEEEETTEE---TTEEEEEEES-S-SSEEEEEEEEE
T ss_pred             HhcCCeEEEEEECCEEccCCcCEEEEEEC-CCCCeEEEEEEEC
Confidence            99999999999999999999999999998 6799999999986

; PDB: 1VPH_E 2P6C_A 2CU5_A 1VMJ_A 1XBF_B 1VMH_A 1VE0_A 2P6H_B 1VMF_C.

>KOG3267 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3e-47  Score=300.16  Aligned_cols=138  Identities=66%  Similarity=1.141  Sum_probs=133.5

Q ss_pred             EEEEEecCCCCeEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCcccC
Q 028918           65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT  144 (202)
Q Consensus        65 ~~titv~T~~r~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H~  144 (202)
                      |++|++...++|||.||+++.+.+++.++....|++|+|.+||+|+|+||||+||+++.|++++|+++||++.+.+|+|.
T Consensus         1 qk~itl~~~~kg~~iit~~ilkeir~dl~~fn~g~~~~fiqhtsaaltinen~d~d~qad~~~~ldkivpe~nsa~~rht   80 (138)
T KOG3267|consen    1 QKIITLDPLRKGCHIITNDILKEIREDLKDFNCGLAHFFIQHTSAALTINENWDADTQADMEDFLDKIVPEGNSAGWRHT   80 (138)
T ss_pred             CceEecCcccCccEEecHHHHHHHHHHHhhccccceeeeeeccceeeEecccCCcchhhhHHHHHHhhCcCCCCcccccc
Confidence            57899999888999999999999988889999999999999999999999999999999999999999999977899999


Q ss_pred             CCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028918          145 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  202 (202)
Q Consensus       145 ~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  202 (202)
                      .||.||||||+||+|+|+++||||.+|+|.|||||+|+|+|||+.|+.|+|+++++|.
T Consensus        81 ~eg~ddmpahikssl~g~qltipit~gklslgtwq~i~l~e~r~~p~ar~iv~ti~gi  138 (138)
T KOG3267|consen   81 AEGLDDMPAHIKSSLFGCQLTIPITKGKLSLGTWQDIQLAEFRDAPHARRIVCTIIGI  138 (138)
T ss_pred             ccCcccchhhhhhccccceEEEEeccCeecccccccchhhhhhcCCcccEEEEEEecC
Confidence            9999999999999999999999999999999999999999999999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
1vmh_A	144	Crystal Structure Of An Uncharacterized Conserved P		9e-16
1xbf_A	140	X-Ray Structure Northeast Structural Genomics Conso		4e-15
1vmf_A	145	Crystal Structure Of A Ybjq-Like Fold Protein Of Un		2e-13
1vmj_A	151	Crystal Structure Of A Putative Thiamin Phosphate S		4e-11
2p6c_A	137	Crystal Structure Of Hypothetical Protein Aq_2013 F		1e-10
1ve0_A	134	Crystal Structure Of Uncharacterized Protein St2072		9e-10
1vph_A	149	Crystal Structure Of A Ybjq-Like Protein Of Unknown		2e-08
2p6h_A	134	Crystal Structure Of Hypothetical Protein Ape1520 F		3e-07
2cu5_A	129	Crystal Structure Of The Conserved Hypothetical Pro		7e-07

>pdb|1VMH|A Chain A, Crystal Structure Of An Uncharacterized Conserved Protein YjbqUPF0047 Family, Ortholog Yugu B.Subtilis (Ca_c0907) From Clostridium Acetobutylicum At 1.31 A Resolution Length = 144

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Query: 89  AQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGP 148
           A D S    G+A +F  HT+A +TINEN D DV  D    L+K+ P  +   +KH +EG 
Sbjct: 39  AVDESGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFP--KVGDYKH-VEG- 94
Query: 149 DDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITL 199
            +  AHIK+S+ G +  I I +G+L +GTWQGI+  E  D P  RKV + +
Sbjct: 95  -NSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKI 143

>pdb|1XBF|A Chain A, X-Ray Structure Northeast Structural Genomics Consortium Target Car10 From C. Acetobutylicum Length = 140

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 89  AQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGP 148
           A D S    G A +F  HT+A +TINEN D DV  D    L+K+ P  +   +KH +EG 
Sbjct: 27  AVDESGVSDGXAVVFCPHTTAGITINENADPDVTRDILVNLDKVFP--KVGDYKH-VEG- 82
Query: 149 DDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITL 199
            +  AHIK+S+ G +  I I +G+L +GTWQGI+  E  D P  RKV + +
Sbjct: 83  -NSHAHIKASLXGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKI 131

>pdb|1VMF|A Chain A, Crystal Structure Of A Ybjq-Like Fold Protein Of Unknown Function (Bh3498) From Bacillus Halodurans At 1.46 A Resolution Length = 145

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 12/106 (11%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT----LEGPDDMPA 153
           G+A +  LHT+A +T+NEN D DV+ D    L+++ P      W H     +EG  +  A
Sbjct: 45  GVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYP------WHHENDRHMEG--NTAA 96
Query: 154 HIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITL 199
           H+K+S  G   T+ I++G+L +GTWQG++ CE     T RK V+ L
Sbjct: 97  HLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGPRTNRKFVVKL 142

>pdb|1VMJ|A Chain A, Crystal Structure Of A Putative Thiamin Phosphate Synthase (Tm0723) From Thermotoga Maritima Msb8 At 1.52 A Resolution Length = 151

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           RR    ITP +++E  ++ S  K GL     +H +AS+ IN++ +  +  D E +L K+ 
Sbjct: 27  RREFINITP-LLEECVRE-SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLA 83
Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPR 193
           PE   + +KH   G D+  AH+K ++ G  + I ITD ++++G W+ ++  E  D   P+
Sbjct: 84  PEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEF-DGMRPK 142
Query: 194 KVVITLNG 201
           +V++ + G
Sbjct: 143 RVLVKIIG 150

>pdb|2P6C|A Chain A, Crystal Structure Of Hypothetical Protein Aq_2013 From Aquifex Aeolicus Vf5. Length = 137

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 6/128 (4%)
Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           RR    IT ++ K + +  SE K GL  +  +H ++S+ I ++ +  + +D   +L K+ 
Sbjct: 15  RRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLA 71
Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPR 193
           P      +KH   G D+  AH+K+ +    + +PIT+G+L++G WQ I+  E  D   P+
Sbjct: 72  P--YRPDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEF-DGQRPK 128
Query: 194 KVVITLNG 201
           +VVI + G
Sbjct: 129 RVVIKIIG 136

>pdb|1VE0|A Chain A, Crystal Structure Of Uncharacterized Protein St2072 From Sulfolobus Tokodaii Length = 134

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143
           I +++++ +     G+AH+ + HT+ ++ INE  +S +  D   +  K+VP      ++H
Sbjct: 21  ITEQVSEAIKGINNGIAHVIVKHTTCAIIINE-AESGLXKDFLNWAKKLVPP--DGEFEH 77
Query: 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 201
            +   ++  AH+ S++ G +  +PI +G+L++GTWQ I L E  D P  R V++   G
Sbjct: 78  NII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEF-DGPRTRTVLVKSXG 133

>pdb|1VPH|A Chain A, Crystal Structure Of A Ybjq-Like Protein Of Unknown Function (Sso2532) From Sulfolobus Solfataricus P2 At 1.76 A Resolution Length = 149

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 93  SEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMP 152
           S  K G+  +F+ H++A++  NE ++  + +D  T + +     RS  WKH L   D+  
Sbjct: 44  SGIKNGICLIFVAHSTAAIVANE-HERGLMEDILTKIKEFTEPSRS--WKHNL-IDDNAH 99
Query: 153 AHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 201
           AH+ ++  G     P+ +G+L  GTWQ I+L E     + R + + + G
Sbjct: 100 AHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILG 148

>pdb|2P6H|A Chain A, Crystal Structure Of Hypothetical Protein Ape1520 From Aeropyrum Pernix K1 Length = 134

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
           GL  +++ HT+A++ +NE  +  + +D   F+ ++   G    WKH L   +   AH+ +
Sbjct: 35  GLLVVYVPHTTAAVAVNE-AEPRLMEDIVEFIRELTKPG--GPWKHNLVDVN-AHAHLGN 90
Query: 158 SMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKV 195
           ++ G +  IP+  G+L++GTWQ I   E  D P  R V
Sbjct: 91  TIIGDSRVIPVVGGRLSLGTWQRILFVEM-DGPRERTV 127

>pdb|2CU5|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1486 From Thermus Thermophilus Hb8 Length = 129

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
           GL +LF+ HT+  LT+ E  D  V  D    L ++ P  R    +H LEG  +  AH+KS
Sbjct: 32  GLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRPQD-RH-LEG--NSHAHLKS 87
Query: 158 SMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITL 199
            + G  L +    G+L +G WQ ++L E  D P  R+V + L
Sbjct: 88  LLTGVHLLLLAEKGRLRLGRWQQVFLAEF-DGPRVREVWVRL 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1vmj_A	151	Hypothetical protein TM0723; putative thiamin phos	3e-41
1vmf_A	145	Hypothetical protein; structural genomics, joint c	4e-41
2p6c_A	137	AQ_2013 protein; NPPSFA, national project on prote	5e-40
2cu5_A	129	Conserved hypothetical protein TT1486; thermus the	2e-37
1ve0_A	134	Hypothetical protein (ST2072); structural genomics	1e-36
1vmh_A	144	Uncharacterized conserved protein YJBQ/UPF0047 FA	2e-36
1vph_A	149	Hypothetical protein SSO2532; YBJQ-like fold, stru	2e-35
2p6h_A	134	Hypothetical protein; structural genomics, unknown	6e-34

>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1 Length = 151

 Score =  136 bits (343), Expect = 3e-41
 Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 9/152 (5%)

Query: 51  NPNPNPMASNPRWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSA 109
           + + + M    +  +K +      RR    ITP + + + +  S  K GL     +H +A
Sbjct: 7   HHHHHHM----KSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITA 60

Query: 110 SLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPIT 169
           S+ IN+  +  +  D E +L K+ PE   + +KH   G D+  AH+K ++ G  + I IT
Sbjct: 61  SVFIND-DEPGLHHDFEVWLEKLAPEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAIT 119

Query: 170 DGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 201
           D ++++G W+ ++  E  D   P++V++ + G
Sbjct: 120 DRKMDLGPWEQVFYGEF-DGMRPKRVLVKIIG 150

>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1 Length = 145

 Score =  135 bits (341), Expect = 4e-41
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 60  NPRWAQKTVTLPPLRRGC-HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYD 118
           +     KT  L    R     IT +I   I +  +    G+A +  LHT+A +T+NEN D
Sbjct: 8   HHHHHMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENAD 65

Query: 119 SDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTW 178
            DV+ D    L+++ P       ++      +  AH+K+S  G   T+ I++G+L +GTW
Sbjct: 66  PDVKRDMIMRLDEVYPW----HHENDRHMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTW 121

Query: 179 QGIWLCEHRDAPTPRKVVITLNG 201
           QG++ CE     T RK V+ L  
Sbjct: 122 QGVYFCEFDGPRTNRKFVVKLLT 144

>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus} Length = 137

 Score =  132 bits (333), Expect = 5e-40
 Identities = 42/141 (29%), Positives = 75/141 (53%), Gaps = 7/141 (4%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +   K +T     RR    IT ++ K + +  SE K GL  +  +H ++S+ I ++ +  
Sbjct: 2   KAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDDEE-G 58

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQG 180
           + +D   +L K+ P      +KH   G D+  AH+K+ +    + +PIT+G+L++G WQ 
Sbjct: 59  LHEDIWEWLEKLAPYR--PDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQE 116

Query: 181 IWLCEHRDAPTPRKVVITLNG 201
           I+  E  D   P++VVI + G
Sbjct: 117 IFYAEF-DGQRPKRVVIKIIG 136

>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus} Length = 129

 Score =  125 bits (315), Expect = 2e-37
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 10/137 (7%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
                + +P    G   IT K+   ++        GL +LF+ HT+  LT+ E  D  V 
Sbjct: 2   EGVVRLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVA 56

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
            D    L ++ P               +  AH+KS + G  L +    G+L +G WQ ++
Sbjct: 57  QDLLGRLAELAPR----HRPQDRHLEGNSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVF 112

Query: 183 LCEHRDAPTPRKVVITL 199
           L E  D P  R+V + L
Sbjct: 113 LAEF-DGPRVREVWVRL 128

>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii} Length = 134

 Score =  124 bits (311), Expect = 1e-36
 Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 10/141 (7%)

Query: 62  RWAQKTVTLPPLRRGCHL-ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +   K  T+    R   + IT     ++++ +     G+AH+ + HT+ ++ INE     
Sbjct: 2   KIISKEFTVKTRSRFDSIDITE----QVSEAIKGINNGIAHVIVKHTTCAIIINEAESGL 57

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQG 180
           ++D        + P+G    ++H +   ++  AH+ S++ G +  +PI +G+L++GTWQ 
Sbjct: 58  MKDFLNWAKKLVPPDGE---FEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQR 113

Query: 181 IWLCEHRDAPTPRKVVITLNG 201
           I L E  D P  R V++   G
Sbjct: 114 IILLEF-DGPRTRTVLVKSMG 133

>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A Length = 144

 Score =  123 bits (310), Expect = 2e-36
 Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
                 IT  + K + +  S    G+A +F  HT+A +TINEN D DV  D    L+K+ 
Sbjct: 26  DDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVF 83

Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPR 193
           P+              +  AHIK+S+ G +  I I +G+L +GTWQGI+  E  D P  R
Sbjct: 84  PK-----VGDYKHVEGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDR 137

Query: 194 KVVITL 199
           KV + +
Sbjct: 138 KVFVKI 143

>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1 Length = 149

 Score =  121 bits (303), Expect = 2e-35
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +     + +    +     IT ++ + + +  S  K G+  +F+ H++A++  NE+    
Sbjct: 14  KVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEHERGL 71

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQG 180
           + D          P      WKH L   D+  AH+ ++  G     P+ +G+L  GTWQ 
Sbjct: 72  MEDILTKIKEFTEPSRS---WKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQN 127

Query: 181 IWLCEHRDAPTPRKVVITLNG 201
           I+L E     + R + + + G
Sbjct: 128 IFLVELDGPRSERHITVEILG 148

>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix} Length = 134

 Score =  116 bits (292), Expect = 6e-34
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 65  QKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
             + T+    R     +T K+ + ++        GL  +++ HT+A++ +NE  +  + +
Sbjct: 3   TGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNE-AEPRLME 59

Query: 124 DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWL 183
           D   F+ ++   G             +  AH+ +++ G +  IP+  G+L++GTWQ I  
Sbjct: 60  DIVEFIRELTKPGGPWKHNLV---DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILF 116

Query: 184 CEHRDAPTPRKVVITLNG 201
            E  D P  R V +   G
Sbjct: 117 VEM-DGPRERTVNLLYLG 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
2p6c_A	137	AQ_2013 protein; NPPSFA, national project on prote	100.0
1vmj_A	151	Hypothetical protein TM0723; putative thiamin phos	100.0
2p6h_A	134	Hypothetical protein; structural genomics, unknown	100.0
1ve0_A	134	Hypothetical protein (ST2072); structural genomics	100.0
1vph_A	149	Hypothetical protein SSO2532; YBJQ-like fold, stru	100.0
1vmf_A	145	Hypothetical protein; structural genomics, joint c	100.0
1vmh_A	144	Uncharacterized conserved protein YJBQ/UPF0047 FA	100.0
2cu5_A	129	Conserved hypothetical protein TT1486; thermus the	100.0

>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus}

Probab=100.00  E-value=2.9e-58  Score=370.46  Aligned_cols=136  Identities=29%  Similarity=0.510  Sum_probs=131.7

Q ss_pred             CeEEEEEEEecCCC-CeEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCC
Q 028918           61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (202)
Q Consensus        61 m~~~~~titv~T~~-r~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~  139 (202)
                      |++++++|+|+|++ ++++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|+.||+++|++|||+++  
T Consensus         1 M~~~~~~i~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~--   75 (137)
T 2p6c_A            1 MKAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLAPYRP--   75 (137)
T ss_dssp             CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HTCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCT--
T ss_pred             CcEEEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHHCCCCC--
Confidence            89999999999986 5999999999999998  999999999999999999999999 99999999999999999984  


Q ss_pred             CcccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028918          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  202 (202)
Q Consensus       140 ~Y~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  202 (202)
                      +|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+||||||| |||+|+|+++++||
T Consensus        76 ~y~H~~eg~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~d-g~r~R~v~v~i~Ge  137 (137)
T 2p6c_A           76 DYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFD-GQRPKRVVIKIIGE  137 (137)
T ss_dssp             TCGGGGGTCCCHHHHHHHHHHCSEEEEEECSSSBCCCSSCEEEEEESS-CSSCEEEEEEEEEC
T ss_pred             CcccCcCCCCCHHHhhhhheeCCeEEEEEECCEECcCCCceEEEEECC-CCCccEEEEEEecC
Confidence            799999999999999999999999999999999999999999999995 89999999999997

>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1

Probab=100.00  E-value=1.1e-56  Score=366.68  Aligned_cols=139  Identities=29%  Similarity=0.506  Sum_probs=132.0

Q ss_pred             CCeEEEEEEEecCC-CCeEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCC
Q 028918           60 NPRWAQKTVTLPPL-RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS  138 (202)
Q Consensus        60 ~m~~~~~titv~T~-~r~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~  138 (202)
                      .|+-|+++|+|+|. +++++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|+.||+++|+||||+++.
T Consensus        12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-dp~v~~Dl~~~l~rlvP~~~~   88 (151)
T 1vmj_A           12 HMKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPEKPY   88 (151)
T ss_dssp             -CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCCG
T ss_pred             hhhceEEEEEEECCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEEcC-CccHHHHHHHHHHHhCCCCCC
Confidence            59999999999996 56999999999999998  999999999999999999999999 999999999999999998731


Q ss_pred             CCcccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028918          139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  202 (202)
Q Consensus       139 ~~Y~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  202 (202)
                      ..|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+|+++||
T Consensus        89 ~~y~H~~eg~dn~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~-dg~r~R~V~v~i~Ge  151 (151)
T 1vmj_A           89 SQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEF-DGMRPKRVLVKIIGE  151 (151)
T ss_dssp             GGCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSSCEEEEEEEEEC
T ss_pred             CCcEecCcCCCchHhhhhhhhcCCeEEEEEECCEECcCCCcEEEEEEC-CCCCeeEEEEEEecC
Confidence            169999999999999999999999999999999999999999999999 799999999999997

>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix}

Probab=100.00  E-value=2e-56  Score=358.61  Aligned_cols=133  Identities=28%  Similarity=0.486  Sum_probs=128.3

Q ss_pred             EEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCc
Q 028918           63 WAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW  141 (202)
Q Consensus        63 ~~~~titv~T~~r-~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y  141 (202)
                      +++++|+++|++| +++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|+.||+++|+||||+++  +|
T Consensus         1 ~~~~~i~~~t~~r~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasltinEn-dp~v~~Dl~~~l~~lvP~~~--~y   75 (134)
T 2p6h_A            1 METGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNEA-EPRLMEDIVEFIRELTKPGG--PW   75 (134)
T ss_dssp             CEEEEEEEECCSSSEEEECHHHHHHHHHT--TTCCSEEEEEECCCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS--SC
T ss_pred             CeEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHhCCCCC--Cc
Confidence            3789999999876 999999999999998  999999999999999999999999 99999999999999999984  79


Q ss_pred             ccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028918          142 KHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  202 (202)
Q Consensus       142 ~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  202 (202)
                      +|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++||
T Consensus        76 ~H~~e-~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~-dg~r~R~v~v~i~Ge  134 (134)
T 2p6h_A           76 KHNLV-DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEM-DGPRERTVNLLYLGE  134 (134)
T ss_dssp             GGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSCEEEEEEEEEEC
T ss_pred             cccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCceEEEEEC-CCCCceEEEEEEecC
Confidence            99999 999999999999999999999999999999999999999 799999999999997

>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}

Probab=100.00  E-value=4.5e-56  Score=356.59  Aligned_cols=133  Identities=30%  Similarity=0.523  Sum_probs=128.5

Q ss_pred             CeEEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCC
Q 028918           61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (202)
Q Consensus        61 m~~~~~titv~T~~r-~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~  139 (202)
                      |++++++|+++|++| +++|||++|+++|+    |+++|+|+||++||||||+|||| ||+|+.||+++|+||||+++  
T Consensus         1 M~~~~~~i~~~t~~r~~~~dIT~~V~~~v~----gi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~--   73 (134)
T 1ve0_A            1 MKIISKEFTVKTRSRFDSIDITEQVSEAIK----GINNGIAHVIVKHTTCAIIINEA-ESGLMKDFLNWAKKLVPPDG--   73 (134)
T ss_dssp             CEEEEEEEEEECCSSSEEEECHHHHHHHTT----TCSSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHSCTTS--
T ss_pred             CcEEEEEEEEecCCCCeEEEChHHHHHHhc----ccCceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHHCCCCC--
Confidence            899999999999876 99999999999996    89999999999999999999999 99999999999999999984  


Q ss_pred             CcccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028918          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  202 (202)
Q Consensus       140 ~Y~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  202 (202)
                      +|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++||
T Consensus        74 ~y~H~~e-~dn~~AHiks~l~G~s~tipV~~G~L~LGtWQ~Iyl~E~-dg~r~R~v~v~i~Ge  134 (134)
T 1ve0_A           74 EFEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEF-DGPRTRTVLVKSMGE  134 (134)
T ss_dssp             CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSCEEEEEEEEEEC
T ss_pred             CccccCC-CCChHHhhhhhccCCcEEEEEECCEeccCCCcEEEEEEC-CCCCeeEEEEEEecC
Confidence            6999999 999999999999999999999999999999999999999 789999999999997

>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1

Probab=100.00  E-value=5.3e-56  Score=362.06  Aligned_cols=137  Identities=27%  Similarity=0.500  Sum_probs=130.4

Q ss_pred             CCCeEEEEEEEecCCC-CeEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCC
Q 028918           59 SNPRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGR  137 (202)
Q Consensus        59 ~~m~~~~~titv~T~~-r~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~  137 (202)
                      -.|++|+++|+|+|.+ ++++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|+.||+++|++|||+++
T Consensus        11 ~~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-Dp~v~~Dl~~~l~rlvP~~~   87 (149)
T 1vph_A           11 HHMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEPSR   87 (149)
T ss_dssp             -CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS
T ss_pred             ceeeEEEEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHhCCCCC
Confidence            3599999999999987 4999999999999998  999999999999999999999999 99999999999999999984


Q ss_pred             CCCcccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCC-CeEEEEEEecC
Q 028918          138 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT-PRKVVITLNGI  202 (202)
Q Consensus       138 ~~~Y~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr-~R~V~v~v~Ge  202 (202)
                        +|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||| |+|| +|+|+++++||
T Consensus        88 --~y~H~~e-~dn~~AHiKssL~G~S~tiPV~~G~L~LGtWQgIyl~E~-dg~r~~R~v~v~i~Ge  149 (149)
T 1vph_A           88 --SWKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVEL-DGPRSERHITVEILGE  149 (149)
T ss_dssp             --CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCCEEEEEEEEEEEEC
T ss_pred             --CccccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCcEEEEEEC-CCCCCCeEEEEEEecC
Confidence              6999988 999999999999999999999999999999999999999 5666 89999999997

>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1

Probab=100.00  E-value=3.8e-54  Score=349.80  Aligned_cols=132  Identities=37%  Similarity=0.562  Sum_probs=124.1

Q ss_pred             EEEEEEecCCCC-eEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCcc
Q 028918           64 AQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK  142 (202)
Q Consensus        64 ~~~titv~T~~r-~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~  142 (202)
                      +.++|+|.|.++ +++|||++|+++|++  ||+++|+|+||++||||||+|||||||+|+.||+++|+||||+++ ..|+
T Consensus        12 ~~~~l~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~-~~y~   88 (145)
T 1vmf_A           12 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHH-ENDR   88 (145)
T ss_dssp             CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCC-TTCC
T ss_pred             ceeEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhcCCCC-CCcC
Confidence            468999999754 999999999999998  999999999999999999999999999999999999999999874 2799


Q ss_pred             cCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCC-CeEEEEEEecC
Q 028918          143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT-PRKVVITLNGI  202 (202)
Q Consensus       143 H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr-~R~V~v~v~Ge  202 (202)
                      | .||  ||+|||||+|+|+|++|||.||+|.|||||+|||||| |||| +|+|+|+++||
T Consensus        89 H-~EG--n~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~-dgpr~~R~v~v~i~Ge  145 (145)
T 1vmf_A           89 H-MEG--NTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEF-DGPRTNRKFVVKLLTD  145 (145)
T ss_dssp             C-TTS--CHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEES-SCCCSCEEEEEEEEEC
T ss_pred             c-CCC--CHHHHHHHHhhCCeEEEEEECCEEccCCCceEEEEEC-cCCCCCcEEEEEEecC
Confidence            9 465  8999999999999999999999999999999999999 6899 99999999997

>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A

Probab=100.00  E-value=2.3e-53  Score=344.91  Aligned_cols=128  Identities=37%  Similarity=0.556  Sum_probs=121.4

Q ss_pred             EEEEEecCCC-CeEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCccc
Q 028918           65 QKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH  143 (202)
Q Consensus        65 ~~titv~T~~-r~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H  143 (202)
                      .++|+|+|.+ ++++|||++|+++|++  ||+++|+|+||++||||||+|||||||+|+.||+++|+||||+++  +|+|
T Consensus        16 ~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~--~y~H   91 (144)
T 1vmh_A           16 VIEYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVG--DYKH   91 (144)
T ss_dssp             -CEEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCSSS--SCCC
T ss_pred             cEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC--Cccc
Confidence            3589999975 5999999999999998  999999999999999999999999999999999999999999984  7999


Q ss_pred             CCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028918          144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN  200 (202)
Q Consensus       144 ~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~  200 (202)
                      +   +|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++
T Consensus        92 ~---~dn~~AHikssL~G~S~tiPV~~GrL~LGtWQgIyl~E~-dgpr~R~v~v~i~  144 (144)
T 1vmh_A           92 V---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKII  144 (144)
T ss_dssp             T---TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEES-SCSCEEEEEEEEC
T ss_pred             C---CCCchHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEEC-CCCceeEEEEEEC
Confidence            7   789999999999999999999999999999999999999 7899999999985

>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus}

Probab=100.00  E-value=1e-51  Score=329.81  Aligned_cols=124  Identities=34%  Similarity=0.551  Sum_probs=114.9

Q ss_pred             EEEecCCCCeEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCcccCCC
Q 028918           67 TVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLE  146 (202)
Q Consensus        67 titv~T~~r~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H~~e  146 (202)
                      +|++++++++++|||++|+++|++     ++|+|+||++||||||+|||||||+|+.||+++|+||+|+++ .+|+| .|
T Consensus         6 ~i~~~~~~~~~~dIT~~V~~~v~~-----~~Gl~~vf~~HTTasltinEnadp~v~~Dl~~~l~~lvP~~~-~~y~H-~e   78 (129)
T 2cu5_A            6 RLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHR-PQDRH-LE   78 (129)
T ss_dssp             EEEEEECSSEEEECHHHHHHTSTT-----CCEEEEEECCCSSEEEEEECCSSHHHHHHHHHHHHHHSCSCC-TTCCC-TT
T ss_pred             EEEEeCCCCeEEECHHHHHHHhhh-----cCcEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC-CCcCc-CC
Confidence            577776677999999999999963     899999999999999999999999999999999999999872 26999 45


Q ss_pred             CCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028918          147 GPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN  200 (202)
Q Consensus       147 G~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~  200 (202)
                      |  ||+||+||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++
T Consensus        79 G--n~~AHiks~L~G~s~tiPV~~G~L~LGtWQ~Iyl~E~-dg~r~R~v~v~i~  129 (129)
T 2cu5_A           79 G--NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEF-DGPRVREVWVRLL  129 (129)
T ss_dssp             S--CHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSEEEEEEEEEC
T ss_pred             C--CHHHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEEC-CCCceeEEEEEEC
Confidence            5  8999999999999999999999999999999999999 7999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1vmja_	139	d.273.1.1 (A:) Hypothetical protein TM0723 {Thermo	8e-48
d1vmfa_	136	d.273.1.1 (A:) Hypothetical protein BH3498 {Bacill	1e-45
d1vmha_	129	d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Cl	2e-42
d1vpha_	138	d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfo	2e-41

>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga maritima [TaxId: 2336]} Length = 139

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein TM0723
species: Thermotoga maritima [TaxId: 2336]

 Score =  151 bits (382), Expect = 8e-48
 Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 5/141 (3%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +  +K +      RR    ITP + + + +  S  K GL     +H +AS+ IN++    
Sbjct: 2   KSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDDEP-G 58

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQG 180
           +  D E +L K+ PE   + +KH   G D+  AH+K ++ G  + I ITD ++++G W+ 
Sbjct: 59  LHHDFEVWLEKLAPEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQ 118

Query: 181 IWLCEHRDAPTPRKVVITLNG 201
           ++  E  D   P++V++ + G
Sbjct: 119 VFYGEF-DGMRPKRVLVKIIG 138

>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus halodurans [TaxId: 86665]} Length = 136

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein BH3498
species: Bacillus halodurans [TaxId: 86665]

 Score =  145 bits (367), Expect = 1e-45
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 7/138 (5%)

Query: 65  QKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
            KT  L    R     IT +I   I +  +    G+A +  LHT+A +T+NEN D DV+ 
Sbjct: 4   MKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKR 61

Query: 124 DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWL 183
           D    L+++ P       ++      +  AH+K+S  G   T+ I++G+L +GTWQG++ 
Sbjct: 62  DMIMRLDEVYPW----HHENDRHMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYF 117

Query: 184 CEHRDAPTPRKVVITLNG 201
           CE     T RK V+ L  
Sbjct: 118 CEFDGPRTNRKFVVKLLT 135

>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium acetobutylicum [TaxId: 1488]} Length = 129

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: B.subtilis YugU ortolog CAC0907
species: Clostridium acetobutylicum [TaxId: 1488]

 Score =  136 bits (345), Expect = 2e-42
 Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 8/126 (6%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
                 IT  + K + +  S    G+A +F  HT+A +TINEN D DV  D    L+K+ 
Sbjct: 11  DDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVF 68

Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPR 193
           P+     +KH      +  AHIK+S+ G +  I I +G+L +GTWQGI+  E  D P  R
Sbjct: 69  PKV--GDYKHV---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDR 122

Query: 194 KVVITL 199
           KV + +
Sbjct: 123 KVFVKI 128

>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus solfataricus [TaxId: 2287]} Length = 138

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein SSO2532
species: Sulfolobus solfataricus [TaxId: 2287]

 Score =  135 bits (340), Expect = 2e-41
 Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           +     IT ++ + + +  S  K G+  +F+ H++A++  NE+    + D     L KI 
Sbjct: 16  QFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEHERGLMED----ILTKIK 69

Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPR 193
                +         D+  AH+ ++  G     P+ +G+L  GTWQ I+L E     + R
Sbjct: 70  EFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSER 129

Query: 194 KVVITLNG 201
            + + + G
Sbjct: 130 HITVEILG 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1vmja_	139	Hypothetical protein TM0723 {Thermotoga maritima [	100.0
d1vmfa_	136	Hypothetical protein BH3498 {Bacillus halodurans [	100.0
d1vpha_	138	Hypothetical protein SSO2532 {Sulfolobus solfatari	100.0
d1vmha_	129	B.subtilis YugU ortolog CAC0907 {Clostridium aceto	100.0

>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein TM0723
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.1e-57  Score=362.22  Aligned_cols=138  Identities=29%  Similarity=0.507  Sum_probs=133.0

Q ss_pred             CeEEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCC
Q 028918           61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (202)
Q Consensus        61 m~~~~~titv~T~~r-~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~  139 (202)
                      |++++++|+++|+++ +++|||++|+++|++  |||++|+|+||++||||||++||| ||+++.||+.+|++|||+++..
T Consensus         1 M~~~~~~i~~~T~~~~~~~dIT~~v~~~v~~--s~i~~Giv~vf~~HTTasl~inE~-dp~~~~Dl~~~l~~lvP~~~~~   77 (139)
T d1vmja_           1 MKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPEKPYS   77 (139)
T ss_dssp             CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCCGG
T ss_pred             CCcEEEEEEEECCCCCEEEEChHHHHHHHHH--hCCceEEEEEEeCCCceEEEEecC-chhHHhhHHHHHHHhhccCCcc
Confidence            899999999999876 999999999999999  999999999999999999999999 9999999999999999987434


Q ss_pred             CcccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028918          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  202 (202)
Q Consensus       140 ~Y~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  202 (202)
                      .|+|+.+|+|||+|||||+|+|+|++|||.||+|.||+||+|||||| ||||+|+|+|+++||
T Consensus        78 ~y~H~~~g~dn~~aHiks~l~g~s~tipi~~G~L~LGtWQ~I~l~E~-dg~r~R~v~v~iiGE  139 (139)
T d1vmja_          78 QYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEF-DGMRPKRVLVKIIGE  139 (139)
T ss_dssp             GCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSSCEEEEEEEEEC
T ss_pred             ccCcCCccCCCcHHHHHHhhhCCeEEEEEECCEECccCCCEEEEEEC-cCCCceEEEEEEEcC
Confidence            79999999999999999999999999999999999999999999998 799999999999997

>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein BH3498
species: Bacillus halodurans [TaxId: 86665]

Probab=100.00  E-value=3.3e-53  Score=338.82  Aligned_cols=132  Identities=35%  Similarity=0.504  Sum_probs=122.7

Q ss_pred             EEEEEEecCCCC-eEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCcc
Q 028918           64 AQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK  142 (202)
Q Consensus        64 ~~~titv~T~~r-~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~  142 (202)
                      |+++|+|+|.++ +++|||++|+++|++  ||+++|+|+||++||||||+||||+||+|+.||+++|++|+|+..  .|.
T Consensus         3 ~~~~~~~~T~~~~~~idIT~~V~~~v~~--sgi~~G~v~vf~~HTTasl~inEn~dp~v~~Dl~~~l~~l~P~~~--~~~   78 (136)
T d1vmfa_           3 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHH--END   78 (136)
T ss_dssp             CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCC--TTC
T ss_pred             cEEEEEEEECCCCeEEEChHHHHHHHHH--cCCcceEEEEEeCCCceEEEEecCCCccHHHHHHHHHhccCCccc--ccc
Confidence            689999999887 799999999999999  999999999999999999999999999999999999999999763  333


Q ss_pred             cCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCC-CeEEEEEEecC
Q 028918          143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT-PRKVVITLNGI  202 (202)
Q Consensus       143 H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr-~R~V~v~v~Ge  202 (202)
                      |  +++|||+|||||+|+|+|++|||.||+|.||+||+|||||| |+|| +|+|+|+++||
T Consensus        79 ~--~~~~n~~aHlks~l~g~s~tiPv~~G~L~LGtWQ~I~l~E~-d~~r~~R~v~v~iiGe  136 (136)
T d1vmfa_          79 R--HMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEF-DGPRTNRKFVVKLLTD  136 (136)
T ss_dssp             C--CTTSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEES-SCCCSCEEEEEEEEEC
T ss_pred             e--eccCChHHHHHhhhcCCeEEEEEECCEECccCccEEEEEEc-cCCCCceEEEEEEecC
Confidence            3  46889999999999999999999999999999999999999 4565 79999999997

>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein SSO2532
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.6e-53  Score=341.04  Aligned_cols=137  Identities=24%  Similarity=0.449  Sum_probs=128.7

Q ss_pred             CCeEEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCC
Q 028918           60 NPRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS  138 (202)
Q Consensus        60 ~m~~~~~titv~T~~r-~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~  138 (202)
                      +|++++++|+|+|.++ +++|||++|+++|++  ||+++|+|+||++||||||++||| ||++++|++++|++++|++  
T Consensus         1 ~M~~~~~~i~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~i~En-~~~~~~d~~~~l~~~~p~~--   75 (138)
T d1vpha_           1 HMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEPS--   75 (138)
T ss_dssp             CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCTT--
T ss_pred             CCceEEEEEEEEECCCCEEEECHHHHHHHHHH--cCCCccEEEEEeCCCeeEEEEEcc-hhhhHHHHHHhhhhhcccc--
Confidence            5999999999999888 999999999999999  999999999999999999999998 8899999999999999987  


Q ss_pred             CCcccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028918          139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI  202 (202)
Q Consensus       139 ~~Y~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge  202 (202)
                      ..|+|+ +++|||+|||||+|+|+|++|||.||+|.||+||+|||||||..+++|+|+|+++||
T Consensus        76 ~~y~h~-~~~dn~~aHiks~L~g~s~tipi~dG~L~LGtWQ~I~l~E~d~~~~~R~v~v~i~GE  138 (138)
T d1vpha_          76 RSWKHN-LIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE  138 (138)
T ss_dssp             SCCGGG-GTCSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCCEEEEEEEEEEEEC
T ss_pred             Ccccee-cCCCChHHHHHhhhcCCeEEEEEECCEECccCccEEEEEECcCCCCceEEEEEEEeC
Confidence            479986 579999999999999999999999999999999999999995444479999999997

>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: B.subtilis YugU ortolog CAC0907
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=100.00  E-value=2.4e-52  Score=331.46  Aligned_cols=126  Identities=37%  Similarity=0.579  Sum_probs=120.1

Q ss_pred             EEEecCCCC-eEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCcccCC
Q 028918           67 TVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTL  145 (202)
Q Consensus        67 titv~T~~r-~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H~~  145 (202)
                      +|+|+|+++ +++|||++|+++|++  ||+++|+|+||++||||||++|||+||+|+.||+++|++|+|++  .+|+|. 
T Consensus         3 e~t~~T~~~~~~idIT~~V~~~v~~--s~i~~G~v~vf~~HTTasl~inEn~dp~v~~Dl~~~l~~lvP~~--~~y~H~-   77 (129)
T d1vmha_           3 EYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKV--GDYKHV-   77 (129)
T ss_dssp             EEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCSS--SSCCCT-
T ss_pred             EEEEEcCCCCEEEEChHHHHHHHHH--cCCcceEEEEEeCCceEEEEEcccCCcchHHHHHHHHHhcCCCC--CCCccc-
Confidence            689999877 799999999999999  99999999999999999999999999999999999999999997  479996 


Q ss_pred             CCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028918          146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN  200 (202)
Q Consensus       146 eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~  200 (202)
                        ++||+||+||+|+|+|++|||.||+|.||+||+|||||| ||||+|+|+|+++
T Consensus        78 --~~n~~aHiks~l~g~s~tiPi~~G~L~LGtWQ~I~l~E~-d~~r~R~v~v~ii  129 (129)
T d1vmha_          78 --EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKII  129 (129)
T ss_dssp             --TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEES-SCSCEEEEEEEEC
T ss_pred             --cCcchhhhhhHhcCCeEEEEEECCEECcCCccEEEEEEC-cCCceeEEEEEEC
Confidence              569999999999999999999999999999999999999 6899999999986