Citrus Sinensis ID: 028973

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MASSSYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEVCY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEccccEEEEEccHHHHHccHHHHHHHHcccccccccccHHHHcccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHcccccccccEEEEEccEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEEccccEEEccccEEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHcc
Coil and Loop (DISEMBL)
masssysstKALSLVFYITLFCFLsgsvsasrtspsdvnskvKLGLYYeslcpysaNFIINYLVKIFEDVDLLSIVdlhlspwgnakirannstfdcqhgpsecllntveacaidswpelnkhfpfIYCIESLvyehkysqwetcfdkleldpkpivdcytsgygtqLELKYAAetnslvpphqyvpwvvvdgqplyevcy
Flexible Loop (DISEMBL)
masssysstKALSLVFYITLFCFLSGsvsasrtspsdvnsKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEVCY
Low Complexity Region (SEG)
MAsssyssTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEVCY
Disordered region (IsUnstruct)
**********ALSLVFYITLFCFLSGSV***********SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEVC*
Disordered Region (DISOPRED)
***********LSLVFYITLFCFLSG***************VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL*****
Disordered Region (DISEMBL)
*********KALSLVFYITLFCFLSGS***********NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEVCY
Disordered Region (DISPRO)
****SYSSTKALSLVFYITLFCFLSGSVSASRTSP*DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEVCY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSSYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEVCY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
Q9ESY9	248	Gamma-interferon-inducibl	yes	no	0.756	0.612	0.378	4e-21
Q499T2	248	Gamma-interferon-inducibl	yes	no	0.746	0.604	0.383	8e-21
B3SP85	246	Gamma-interferon-inducibl	yes	no	0.815	0.666	0.374	1e-20
A6QPN6	244	Gamma-interferon-inducibl	yes	no	0.681	0.561	0.375	4e-20
P13284	250	Gamma-interferon-inducibl	yes	no	0.736	0.592	0.366	4e-19
O17861	277	GILT-like protein F37H8.5	yes	no	0.771	0.559	0.341	4e-17
P34276	323	GILT-like protein C02D5.2	no	no	0.825	0.513	0.284	8e-16
Q61Z40	220	GILT-like protein CBG0328	N/A	no	0.900	0.822	0.203	3e-09
Q23570	218	GILT-like protein ZK669.3	no	no	0.920	0.848	0.209	8e-09

>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus musculus GN=Ifi30 PE=1 SV=3

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 9/161 (5%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNST--FDCQH 99
           V++ LYYESLC     F++  L   +  + ++ I+++ L P+GNA+ R  + T  F CQH
Sbjct: 59  VRVSLYYESLCGACRYFLVRDLFPTW--LMVMEIMNITLVPYGNAQERNVSGTWEFTCQH 116

Query: 100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFD--KLELDPKPIV 157
           G  EC LN VEAC +D   E    F  I C+E +  +    +   C      E+ P+ I+
Sbjct: 117 GELECRLNMVEACLLDKL-EKEAAFLTIVCMEEM--DDMEKKLGPCLQVYAPEVSPESIM 173

Query: 158 DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYE 198
           +C T   GTQL  + A  T++L PPH+YVPWV+V+ +PL +
Sbjct: 174 ECATGKRGTQLMHENAQLTDALHPPHEYVPWVLVNEKPLKD 214

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -

>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus norvegicus GN=Ifi30 PE=2 SV=1

 Score =  100 bits (248), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 90/159 (56%), Gaps = 9/159 (5%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNST--FDCQH 99
           V + LYYESLC     F++  L   +  + ++ I+++ L P+GNA+ R  + T  F CQH
Sbjct: 59  VNVSLYYESLCGACRYFLVRNLFPTW--LMVMEIMNITLVPYGNAQERNVSGTWEFTCQH 116

Query: 100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL--ELDPKPIV 157
           G  EC LN VEAC +D   E    F  I C+E +  E    +   C      E+ P+ I+
Sbjct: 117 GELECKLNKVEACLLDKL-EKEAAFLTIVCMEEM--EDMEKKLGPCLQLYVPEVSPESIM 173

Query: 158 DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL 196
           +C T   GT+L  + A  T++L PPH+YVPWV+V+ +PL
Sbjct: 174 ECATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPL 212

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa GN=IFI30 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 92/179 (51%), Gaps = 15/179 (8%)

Query: 24  LSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW 83
           L   V  S   P +VN      LYYESLC     F++  L   +  + +  I+++ L P+
Sbjct: 46  LQRPVGKSDPPPVNVN------LYYESLCNGCRYFLVRELFPTW--LMVWEILNVTLVPY 97

Query: 84  GNAKIR--ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQ 141
           GNA+ R  +    F CQHG  EC +N VEAC +D   E N  F  I CIE L  +     
Sbjct: 98  GNAQERNVSGRWEFTCQHGEQECKMNKVEACLLDKL-EKNMAFLTIVCIEEL--DDMEKN 154

Query: 142 WETCFD--KLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYE 198
            E C      ++ P  I++C     G QL    A  T++L PPH+YVPWVVV+G+P+ E
Sbjct: 155 LEPCLQIYAPKVSPDSIMECAMGDRGMQLLHINAQLTDALKPPHEYVPWVVVNGKPMTE 213

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus GN=IFI30 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 87/168 (51%), Gaps = 31/168 (18%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR--ANNSTFDCQH 99
           V + LYYE+LCP    F+I  L   +  + +L I+++ L P+GNA+ R  +    F CQH
Sbjct: 56  VNVSLYYEALCPGCREFLIRELFPTW--LMVLEILNVTLVPYGNAQERNVSGKWEFTCQH 113

Query: 100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKP---- 155
           G  ECLLN VEAC +D   E    F  I C+E +             D +E + KP    
Sbjct: 114 GERECLLNKVEACLLDQL-EQKIAFLTIVCLEEM-------------DDMEQNLKPCLQI 159

Query: 156 ---------IVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQ 194
                    I++C T   G QL    A  T++L PPH+YVPWVVV+G+
Sbjct: 160 YAPKVSADSIMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGE 207

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 13/161 (8%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR--ANNSTFDCQH 99
           V + LYYE+LC     F+I  L   +  + ++ I+++ L P+GNA+ +  +    F CQH
Sbjct: 62  VNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQH 119

Query: 100 GPSECLLNTVEACAIDSWPELNKHFPF--IYCIESLVYEHKYSQWETCFD--KLELDPKP 155
           G  EC  N VEAC +D   EL+    F  I C+E   +E        C       L P  
Sbjct: 120 GEEECKFNKVEACVLD---ELDMELAFLTIVCMEE--FEDMERSLPLCLQLYAPGLSPDT 174

Query: 156 IVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL 196
           I++C     G QL    A  T++L PPH+YVPWV V+G+PL
Sbjct: 175 IMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL 215

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds (By similarity). Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 9/164 (5%)

Query: 39  NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQ 98
           N K+ + +  E+LCP   NF+   L  I    +  + V++ L P+GNAK+   + T  CQ
Sbjct: 73  NQKINITVLIEALCPDCQNFLTKQLYPIVFK-NFANYVNIELVPFGNAKV-LEDGTIKCQ 130

Query: 99  HGPSECLLNTVEACAIDSWPELNKHFPFIYCI-ESLVYEHKYSQW-ETCFDKLELD---P 153
           HG  EC +N  E C IDS  +     P + CI ESL  + +++   + CF+KL++     
Sbjct: 131 HGEEECSINKFEGCFIDSMQD-QSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQ 189

Query: 154 KPIVDCYTSGYGTQLELKYAAETNSLVP-PHQYVPWVVVDGQPL 196
           +    C  S  G  L+ K AA T ++ P  H++VPWV+++G  L
Sbjct: 190 RLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSL 233

Caenorhabditis elegans (taxid: 6239)

>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 10/176 (5%)

Query: 23  FLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSP 82
           F+     A  T    V + VKL +Y E+ CP ++ F    L K ++ +  L+ ++L++ P
Sbjct: 120 FIEYEPKAGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIP 179

Query: 83  WGNAKIRANNSTFD--CQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYS 140
           +G A+     + F+  CQHGP+EC +N +  C ID +   +++ P + C++      KYS
Sbjct: 180 FGKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQG-----KYS 234

Query: 141 QWETCFDKLELDP---KPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193
             E      E  P   + + +C +   G +L      +T SL P   ++PW+V++G
Sbjct: 235 LDEAMKCVTENYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVING 290

Caenorhabditis elegans (taxid: 6239)

>sp|Q61Z40|YO30_CAEBR GILT-like protein CBG03282 OS=Caenorhabditis briggsae GN=CBG03282 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 89/192 (46%), Gaps = 11/192 (5%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
            V+Y  LF  +   + +S+ +  +   KV +  + E  C  ++ ++  + + ++  +   
Sbjct: 8   FVYYSFLFILV---LCSSKDTEVNNGEKVNIVAFGEGRCSDTSFWMKWHWLPMWRMLGST 64

Query: 74  SIVDLHLSPWGNAKIRANNSTFD-----CQHGPSECLLNTVEACAIDSWPELNKHFPFIY 128
             ++    P+G      ++ + D     C HG  ECLLN ++AC I++ P   ++   + 
Sbjct: 65  GRINFEYHPYGIKTTCVDSDSGDDVVCECHHGARECLLNQLQACVIEALPNFEEYMEVVT 124

Query: 129 CIESLVYEHKYSQWETCFDK-LELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVP 187
           CI+    ++     E CF++  +L+   ++ C  S +G +L   +      + P   + P
Sbjct: 125 CIQG--KQNISMAAEACFNEPSKLERAKMMSCADSRHGRKLFSDHENFVAQMAPEMDWAP 182

Query: 188 WVVVDGQPLYEV 199
           W++++G+   E 
Sbjct: 183 WILINGKRYKEA 194

Caenorhabditis briggsae (taxid: 6238)

>sp|Q23570|YO30_CAEEL GILT-like protein ZK669.3 OS=Caenorhabditis elegans GN=ZK669.3 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 85/196 (43%), Gaps = 11/196 (5%)

Query: 10  KALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFED 69
           + L+ VF   +      S +  + +  D+ + V  G   E  C  ++ ++  + + ++  
Sbjct: 2   RRLNGVFICLILFITKISYAKDKGANGDMVNIVAFG---EGRCSDTSYWMKWHWLPMWRM 58

Query: 70  VDLLSIVDLHLSPWGNAKI-----RANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHF 124
           +     ++    P+G          A++   DC HG  ECLLN ++AC I++ P    + 
Sbjct: 59  LGSTGRINFDYHPYGIKTTCVDSESADDVVCDCHHGNRECLLNQLQACVIEALPNFEDYM 118

Query: 125 PFIYCIESLVYEHKYSQWETCFDK-LELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPH 183
             + CI+    ++     E CF+   +LD   +++C  S +G +L          + P  
Sbjct: 119 EVVTCIQG--KQNISMAAEVCFEGPTKLDRTKMMECAESRHGRKLFSDQENIVAQMAPEM 176

Query: 184 QYVPWVVVDGQPLYEV 199
            + PW++++G    E 
Sbjct: 177 DWAPWILINGTRYKEA 192

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
225434492	259	PREDICTED: gamma-interferon-inducible ly	0.825	0.640	0.792	9e-72
147805691	259	hypothetical protein VITISV_012674 [Viti	0.825	0.640	0.786	1e-70
224103875	255	predicted protein [Populus trichocarpa]	0.791	0.623	0.737	5e-67
225434490	284	PREDICTED: gamma-interferon-inducible ly	0.960	0.679	0.651	8e-66
18390723	265	GILT domain-containing protein [Arabidop	0.910	0.690	0.643	3e-65
8954038	262	Contains similarity to an unknown protei	0.910	0.698	0.643	4e-65
357458115	260	Gamma-interferon-inducible lysosomal thi	0.865	0.669	0.664	3e-64
388512129	260	unknown [Medicago truncatula]	0.865	0.669	0.659	4e-64
297843502	268	hypothetical protein ARALYDRAFT_470730 [	0.940	0.705	0.594	2e-63
449454993	223	PREDICTED: gamma-interferon-inducible ly	0.776	0.699	0.715	8e-63

>gi|225434492|ref|XP_002275283.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 2 [Vitis vinifera] gi|297745847|emb|CBI15903.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (702), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 134/169 (79%), Positives = 147/169 (86%), Gaps = 3/169 (1%)

Query: 30  ASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR 89
           AS   PSD + KV LGLYYESLCPYSANFIINYLVKIFE+  L+SIVDL+L P+GNAKIR
Sbjct: 21  ASGALPSD-SDKVSLGLYYESLCPYSANFIINYLVKIFEN-GLISIVDLNLVPFGNAKIR 78

Query: 90  ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL 149
            NN T DCQHGP+ECLLNTVEACAID WP+L++HF FIYCIE+LVYE KY QWETCF+KL
Sbjct: 79  GNN-TIDCQHGPAECLLNTVEACAIDVWPDLSQHFSFIYCIETLVYERKYPQWETCFEKL 137

Query: 150 ELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYE 198
            LDPKPI DCY SGYG +LELKYAAETN L PPH+YVPWVVVDGQPLYE
Sbjct: 138 GLDPKPISDCYNSGYGKELELKYAAETNGLQPPHKYVPWVVVDGQPLYE 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805691|emb|CAN76152.1| hypothetical protein VITISV_012674 [Vitis vinifera]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 146/169 (86%), Gaps = 3/169 (1%)

Query: 30  ASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR 89
           AS   PSD + KV LGLYYESLCPYSANFIINYLVKIFE+  L+SIV L+L P+GNAKIR
Sbjct: 21  ASGALPSD-SDKVSLGLYYESLCPYSANFIINYLVKIFEN-GLISIVXLNLVPFGNAKIR 78

Query: 90  ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL 149
            NN T DCQHGP+ECLLNTVEACAID WP+L++HF FIYCIE+LVYE KY QWETCF+KL
Sbjct: 79  GNN-TIDCQHGPAECLLNTVEACAIDVWPDLSQHFSFIYCIETLVYEXKYPQWETCFEKL 137

Query: 150 ELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYE 198
            LDPKPI DCY SGYG +LELKYAAETN L PPH+YVPWVVVDGQPLYE
Sbjct: 138 GLDPKPISDCYNSGYGKELELKYAAETNGLQPPHKYVPWVVVDGQPLYE 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103875|ref|XP_002313228.1| predicted protein [Populus trichocarpa] gi|222849636|gb|EEE87183.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (661), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 118/160 (73%), Positives = 138/160 (86%), Gaps = 1/160 (0%)

Query: 39  NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQ 98
           + KV L LYYESLCPYSANFI+NYL K+ ED DLLSIVDL+LSPWGNAKIR N+ TF CQ
Sbjct: 33  SDKVSLALYYESLCPYSANFIVNYLDKLVEDDDLLSIVDLYLSPWGNAKIRGND-TFVCQ 91

Query: 99  HGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVD 158
           HGP ECLLNTVEACAI +WP+L  HFPF+YC+E LVYE KY +WE+CF++L LDPK + +
Sbjct: 92  HGPYECLLNTVEACAIHAWPKLEDHFPFVYCVEKLVYERKYPEWESCFEELGLDPKRVSE 151

Query: 159 CYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYE 198
           CYT GYG +LEL+YAAETN+L PPH+YVPWVVVDGQP+YE
Sbjct: 152 CYTGGYGNELELEYAAETNALQPPHKYVPWVVVDGQPIYE 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434490|ref|XP_002275261.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 1 [Vitis vinifera]

 Score =  255 bits (651), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 129/198 (65%), Positives = 149/198 (75%), Gaps = 5/198 (2%)

Query: 5   SYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNS---KVKLGLYYESLCPYSANFIIN 61
           S SS  +LS      L   +S   SA+    S   S   KV L LYYE+LCPY +NFI+N
Sbjct: 15  SESSMDSLSFSHLPCLLLIISSLFSAATARASISASEAEKVPLALYYETLCPYCSNFIVN 74

Query: 62  YLVKIFEDVD-LLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPEL 120
           +L+K+F + D L+SIVDL L P+GNAKI   N T  CQHGP+ECLLNTVEACAID WP+L
Sbjct: 75  HLIKLFNNGDGLVSIVDLKLLPYGNAKI-GPNGTITCQHGPAECLLNTVEACAIDVWPDL 133

Query: 121 NKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLV 180
           ++HF FIYCIE+LVYE KY QWETCF+KL LDPKPI DCY SGYG +LELKYAAETN L 
Sbjct: 134 SQHFSFIYCIETLVYERKYPQWETCFEKLGLDPKPISDCYNSGYGKELELKYAAETNGLQ 193

Query: 181 PPHQYVPWVVVDGQPLYE 198
           PPH+YVPWVVVDGQPLYE
Sbjct: 194 PPHKYVPWVVVDGQPLYE 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390723|ref|NP_563779.1| GILT domain-containing protein [Arabidopsis thaliana] gi|15146334|gb|AAK83650.1| At1g07080/F10K1_15 [Arabidopsis thaliana] gi|15809756|gb|AAL06806.1| At1g07080/F10K1_15 [Arabidopsis thaliana] gi|332189954|gb|AEE28075.1| GILT domain-containing protein [Arabidopsis thaliana]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/185 (64%), Positives = 149/185 (80%), Gaps = 2/185 (1%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
           LV Y+ LF F S S  +  + PS  + KV +GLYYESLCPY ++FI+N+L K+FED DL+
Sbjct: 12  LVCYVFLFPFASSSDYSGVSLPSS-SPKVSVGLYYESLCPYCSSFIVNHLAKLFED-DLI 69

Query: 74  SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
           SIVDLHLSPWGN K+R++N T  CQHG  EC L+TVEACAID+WP+++ HFPFIYC+E L
Sbjct: 70  SIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDHFPFIYCVEKL 129

Query: 134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193
           V EHKY +WETC++KL L+ KP+ DC +SG+G +L L YAAETN+L PPH+YVPWVVVDG
Sbjct: 130 VTEHKYDKWETCYEKLNLNSKPVADCLSSGHGNELALHYAAETNALQPPHKYVPWVVVDG 189

Query: 194 QPLYE 198
           QPLYE
Sbjct: 190 QPLYE 194

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8954038|gb|AAF82212.1|AC067971_20 Contains similarity to an unknown protein F7A7_100 gi|7327817 from Arabidopsis thaliana BAC F7A7 gb|AL161946. ESTs gb|N65842, gb|F19836 and gb|AI993679 come from this gene [Arabidopsis thaliana]

 Score =  253 bits (645), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 119/185 (64%), Positives = 149/185 (80%), Gaps = 2/185 (1%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
           LV Y+ LF F S S  +  + PS  + KV +GLYYESLCPY ++FI+N+L K+FED DL+
Sbjct: 9   LVCYVFLFPFASSSDYSGVSLPSS-SPKVSVGLYYESLCPYCSSFIVNHLAKLFED-DLI 66

Query: 74  SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
           SIVDLHLSPWGN K+R++N T  CQHG  EC L+TVEACAID+WP+++ HFPFIYC+E L
Sbjct: 67  SIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDHFPFIYCVEKL 126

Query: 134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193
           V EHKY +WETC++KL L+ KP+ DC +SG+G +L L YAAETN+L PPH+YVPWVVVDG
Sbjct: 127 VTEHKYDKWETCYEKLNLNSKPVADCLSSGHGNELALHYAAETNALQPPHKYVPWVVVDG 186

Query: 194 QPLYE 198
           QPLYE
Sbjct: 187 QPLYE 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458115|ref|XP_003599338.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula] gi|355488386|gb|AES69589.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 123/185 (66%), Positives = 142/185 (76%), Gaps = 11/185 (5%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
           L+ +I+ F   S         PS  +SKV L LYYESLCPYSANFI+NYL KIF+  DLL
Sbjct: 13  LILFISFFSLFS---------PSQSHSKVSLELYYESLCPYSANFIVNYLPKIFKH-DLL 62

Query: 74  SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
           SIVDL L PWGNAK+R N STFDCQHGP ECLLNTVEACAID WP+L KHF FIYC+E L
Sbjct: 63  SIVDLKLVPWGNAKLRGN-STFDCQHGPYECLLNTVEACAIDIWPQLEKHFSFIYCVEDL 121

Query: 134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193
            Y+ K ++WE+CF+KL LD K + DCY S  G +LELKYA ETN+L PPH+YVPWVVVDG
Sbjct: 122 AYQGKRTEWESCFEKLGLDSKLVNDCYRSERGNELELKYADETNALQPPHKYVPWVVVDG 181

Query: 194 QPLYE 198
           +PLYE
Sbjct: 182 EPLYE 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512129|gb|AFK44126.1| unknown [Medicago truncatula]

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/185 (65%), Positives = 142/185 (76%), Gaps = 11/185 (5%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
           L+ +I+ F   S         PS  +SKV L LYYESLCPYSANFI+NYL KIF+  DLL
Sbjct: 13  LILFISFFSLFS---------PSQSHSKVSLELYYESLCPYSANFIVNYLPKIFKH-DLL 62

Query: 74  SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
           SIVDL L PWGNAK+R N STFDCQHGP ECLLNTVEACAID WP+L +HF FIYC+E L
Sbjct: 63  SIVDLKLVPWGNAKLRGN-STFDCQHGPYECLLNTVEACAIDIWPQLERHFSFIYCVEDL 121

Query: 134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193
            Y+ K ++WE+CF+KL LD K + DCY S  G +LELKYA ETN+L PPH+YVPWVVVDG
Sbjct: 122 AYQGKRTEWESCFEKLGLDSKLVNDCYRSERGNELELKYADETNALQPPHKYVPWVVVDG 181

Query: 194 QPLYE 198
           +PLYE
Sbjct: 182 EPLYE 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843502|ref|XP_002889632.1| hypothetical protein ARALYDRAFT_470730 [Arabidopsis lyrata subsp. lyrata] gi|297335474|gb|EFH65891.1| hypothetical protein ARALYDRAFT_470730 [Arabidopsis lyrata subsp. lyrata]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 151/202 (74%), Gaps = 13/202 (6%)

Query: 4   SSYSSTKALSLVFYITLF-------CFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSA 56
           +S +S   L LV Y+ LF             +S   +SP     KV +GLYYESLCPY +
Sbjct: 2   ASITSKLLLVLVCYVFLFPFASFSSSADFSGISLPSSSP-----KVSVGLYYESLCPYCS 56

Query: 57  NFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS 116
           +FI+N+L K+FED DL+SIVDLHLSPWGN K+R +N T  CQHG  EC L+TVEACAID+
Sbjct: 57  SFIVNHLTKLFED-DLISIVDLHLSPWGNTKLRPDNVTAVCQHGAFECFLDTVEACAIDA 115

Query: 117 WPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAET 176
           WP+++ HFPFIYC+E LV EHKY++WETC++KL L+ KP+ DC ++G+G +L L YAAET
Sbjct: 116 WPKVSDHFPFIYCVEKLVTEHKYNKWETCYEKLNLNSKPVADCLSTGHGNELALHYAAET 175

Query: 177 NSLVPPHQYVPWVVVDGQPLYE 198
           N+L PPHQYVPWVVVDGQPLYE
Sbjct: 176 NALQPPHQYVPWVVVDGQPLYE 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454993|ref|XP_004145238.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449472266|ref|XP_004153541.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449514550|ref|XP_004164407.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus]

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 113/158 (71%), Positives = 139/158 (87%), Gaps = 2/158 (1%)

Query: 41  KVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHG 100
           KV L LYYESLCPYSANFI+NYL+K+F+D DL+SIVDL L P+GNA++  N+S   CQHG
Sbjct: 38  KVSLKLYYESLCPYSANFIVNYLIKLFDD-DLISIVDLRLVPYGNARVGRNDS-ITCQHG 95

Query: 101 PSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCY 160
           PSECLLNT+EACAI++WPEL+ HFPFIYC+E LVY+ KY+QWE+CF+KL L+PKPI DCY
Sbjct: 96  PSECLLNTMEACAINAWPELDGHFPFIYCVEYLVYKRKYTQWESCFEKLGLNPKPISDCY 155

Query: 161 TSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYE 198
           ++  G +LEL+YAAET++L PPH+YVPWVVVDGQPLYE
Sbjct: 156 STELGKKLELEYAAETDNLQPPHKYVPWVVVDGQPLYE 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2007407	265	AT1G07080 "AT1G07080" [Arabido	0.910	0.690	0.643	4.5e-66
TAIR|locus:2149730	233	OSH1 "AT5G01580" [Arabidopsis	0.860	0.742	0.502	1e-43
TAIR|locus:2123286	231	AT4G12900 "AT4G12900" [Arabido	0.850	0.740	0.465	2.1e-36
TAIR|locus:2135813	232	AT4G12890 "AT4G12890" [Arabido	0.900	0.780	0.452	5.7e-36
TAIR|locus:2135783	229	AT4G12870 "AT4G12870" [Arabido	0.850	0.746	0.437	3.7e-32
TAIR|locus:2123251	243	GILT "AT4G12960" [Arabidopsis	0.746	0.617	0.458	1.3e-31
MGI|MGI:2137648	248	Ifi30 "interferon gamma induci	0.786	0.637	0.381	4.3e-22
RGD|1310758	248	Ifi30 "interferon gamma induci	0.746	0.604	0.383	5.5e-22
UNIPROTKB|B3SP85	246	IFI30 "Gamma-interferon-induci	0.756	0.617	0.385	1.5e-21
UNIPROTKB|A6QPN6	244	IFI30 "Gamma-interferon-induci	0.796	0.655	0.380	6.3e-21

TAIR|locus:2007407 AT1G07080 "AT1G07080" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 119/185 (64%), Positives = 149/185 (80%)

Query:    14 LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
             LV Y+ LF F S S  +  + PS  + KV +GLYYESLCPY ++FI+N+L K+FED DL+
Sbjct:    12 LVCYVFLFPFASSSDYSGVSLPSS-SPKVSVGLYYESLCPYCSSFIVNHLAKLFED-DLI 69

Query:    74 SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
             SIVDLHLSPWGN K+R++N T  CQHG  EC L+TVEACAID+WP+++ HFPFIYC+E L
Sbjct:    70 SIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDHFPFIYCVEKL 129

Query:   134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 193
             V EHKY +WETC++KL L+ KP+ DC +SG+G +L L YAAETN+L PPH+YVPWVVVDG
Sbjct:   130 VTEHKYDKWETCYEKLNLNSKPVADCLSSGHGNELALHYAAETNALQPPHKYVPWVVVDG 189

Query:   194 QPLYE 198
             QPLYE
Sbjct:   190 QPLYE 194

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2149730 OSH1 "AT5G01580" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 89/177 (50%), Positives = 117/177 (66%)

Query:    22 CFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLS 81
             C  S ++     S S  + KV L LYYE+LCP+ A FI+N L KIFE   L+S +DL L 
Sbjct:     8 CITSCTIFFCLLSLSS-SQKVTLSLYYEALCPFCAEFIVNRLPKIFE-TGLISSIDLQLV 65

Query:    82 PWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQ 141
             PWGNA IR +  T  CQHG +EC LN + ACAI+++P++ KHF +IYC E LV E+K  +
Sbjct:    66 PWGNAAIRPDG-TILCQHGEAECALNAIHACAINAYPDVMKHFGYIYCTEQLVLENKLEK 124

Query:   142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYE 198
             W  C + + L  +  VDCY +GYG QLE +YA ET+ L P H++VPWVVV+  PL E
Sbjct:   125 WADCLEMVGLS-RAAVDCYINGYGNQLEQRYAEETSELYPAHRFVPWVVVNNLPLQE 180

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2123286 AT4G12900 "AT4G12900" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 87/187 (46%), Positives = 116/187 (62%)

Query:    14 LVFY--ITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVD 71
             LVF+  + LF F S ++ A     SD   KVKL LYYESLCP   NFI+++L KIF + D
Sbjct:    13 LVFFACLLLFTFSSHNLVAGE---SD---KVKLNLYYESLCPSCQNFIVHHLGKIF-NTD 65

Query:    72 LLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIE 131
             L +I DL L P+GNA + +++ T  CQHG  EC LN +EACAI +WP    H+ FI C+E
Sbjct:    66 LHTITDLKLIPFGNAHV-SDDLTVTCQHGEEECKLNALEACAIRTWPNQRLHYKFIRCVE 124

Query:   132 SLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVV 191
             +       + WE+C  K   + K I DCY      +L L YA +T SL P H+YVPW+ +
Sbjct:   125 T-----NTNAWESCVKKYGGE-KAINDCYNGDLSKELILGYANQTLSLKPEHKYVPWMTL 178

Query:   192 DGQPLYE 198
             +G+PLYE
Sbjct:   179 NGEPLYE 185

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2135813 AT4G12890 "AT4G12890" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 86/190 (45%), Positives = 112/190 (58%)

Query:     9 TKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFE 68
             TK + L   + L C    + S +     + N KVK+ LYYESLCPY  NFI++ L KIF 
Sbjct:     7 TKFVDLFPCLFLACLFVFTYSNNLVVAENSN-KVKINLYYESLCPYCQNFIVDDLGKIF- 64

Query:    69 DVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIY 128
             D DLL I DL L P+GNA I +NN T  CQHG  EC LN +EAC I + P+    + FI 
Sbjct:    65 DSDLLKITDLKLVPFGNAHI-SNNLTITCQHGEEECKLNALEACGIRTLPDPKLQYKFIR 123

Query:   129 CIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPW 188
             C+E        ++WE+C  K   + K I DCY      +L L YA  T+SL P H+YVPW
Sbjct:   124 CVEK-----DTNEWESCVKKSGRE-KAINDCYNGDLSQKLILGYAKLTSSLKPKHEYVPW 177

Query:   189 VVVDGQPLYE 198
             V ++G+PLY+
Sbjct:   178 VTLNGKPLYD 187

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2135783 AT4G12870 "AT4G12870" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 81/185 (43%), Positives = 110/185 (59%)

Query:    14 LVFYITLFCFLSGSVSASR-TSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL 72
             LVF+    CF+  + S    T  SD   KV+L LYYESLCP   +FI++ LVK+F D DL
Sbjct:    10 LVFFA---CFVLFTFSHKLVTGESD---KVELNLYYESLCPGCQSFIVDELVKVF-DSDL 62

Query:    73 LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIES 132
              +I D+ L P+G AK+ +NN T  CQHG  EC LN +EAC I++ P     + FI C+E+
Sbjct:    63 DTITDVKLVPFGYAKV-SNNLTVICQHGEEECKLNALEACVINTLPNPKSQYKFIRCVEN 121

Query:   133 LVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVD 192
                      WE+   K   + K I DCY S    +L L YA +T+SL P H++VPWV ++
Sbjct:   122 -----NTDNWESSCLKGYGNEKAINDCYNSDLSKKLILGYAKQTSSLKPKHEFVPWVTIN 176

Query:   193 GQPLY 197
              +PLY
Sbjct:   177 SKPLY 181

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2123251 GILT "AT4G12960" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 77/168 (45%), Positives = 103/168 (61%)

Query:    39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQ 98
             + KVKL LYYESLCP    FI++ L KIF D DL +I DL L P+GNA++ ++N T  CQ
Sbjct:    29 SGKVKLNLYYESLCPGCQEFIVDDLGKIF-DYDLYTITDLKLFPFGNAEL-SDNLTVTCQ 86

Query:    99 HGPSECLLNTVEACAIDSWPE-LNK---------HFPFIYCIESLVYEHKYSQWETCFDK 148
             HG  EC LN +EACA+ +WP+  +K          + FI C+ES   + K   WE+C   
Sbjct:    87 HGEEECKLNALEACALRTWPDQFDKCDGYGTQKSQYSFIRCVES---DTK--GWESCVKN 141

Query:   149 LELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL 196
                + K I DCY      +L L YA +T +L PPH+YVPWV ++G+PL
Sbjct:   142 SGRE-KAINDCYNGDLSRKLILGYATKTKNLKPPHEYVPWVTLNGKPL 188

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2137648 Ifi30 "interferon gamma inducible protein 30" [Mus musculus (taxid:10090)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 63/165 (38%), Positives = 93/165 (56%)

Query:    35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNST 94
             P   +  V++ LYYESLC     F++  L   +  + ++ I+++ L P+GNA+ R  + T
Sbjct:    52 PLPPSPPVRVSLYYESLCGACRYFLVRDLFPTW--LMVMEIMNITLVPYGNAQERNVSGT 109

Query:    95 --FDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLV-YEHKYSQWETCFDKLEL 151
               F CQHG  EC LN VEAC +D   E    F  I C+E +   E K       +   E+
Sbjct:   110 WEFTCQHGELECRLNMVEACLLDKL-EKEAAFLTIVCMEEMDDMEKKLGPCLQVYAP-EV 167

Query:   152 DPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL 196
              P+ I++C T   GTQL  + A  T++L PPH+YVPWV+V+ +PL
Sbjct:   168 SPESIMECATGKRGTQLMHENAQLTDALHPPHEYVPWVLVNEKPL 212

GO:0005576 "extracellular region" evidence=IEA

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0015036 "disulfide oxidoreductase activity" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IMP

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=IMP

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IMP

GO:0050821 "protein stabilization" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=ISO;TAS

RGD|1310758 Ifi30 "interferon gamma inducible protein 30" [Rattus norvegicus (taxid:10116)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 61/159 (38%), Positives = 90/159 (56%)

Query:    42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNST--FDCQH 99
             V + LYYESLC     F++  L   +  + ++ I+++ L P+GNA+ R  + T  F CQH
Sbjct:    59 VNVSLYYESLCGACRYFLVRNLFPTW--LMVMEIMNITLVPYGNAQERNVSGTWEFTCQH 116

Query:   100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL--ELDPKPIV 157
             G  EC LN VEAC +D   E    F  I C+E +  E    +   C      E+ P+ I+
Sbjct:   117 GELECKLNKVEACLLDKL-EKEAAFLTIVCMEEM--EDMEKKLGPCLQLYVPEVSPESIM 173

Query:   158 DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL 196
             +C T   GT+L  + A  T++L PPH+YVPWV+V+ +PL
Sbjct:   174 ECATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPL 212

GO:0005576 "extracellular region" evidence=IEA

GO:0005764 "lysosome" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO;ISS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA;ISO

GO:0030054 "cell junction" evidence=IEA;ISO

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0050821 "protein stabilization" evidence=IEA;ISO

UNIPROTKB|B3SP85 IFI30 "Gamma-interferon-inducible-lysosomal thiol reductase" [Sus scrofa (taxid:9823)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 62/161 (38%), Positives = 87/161 (54%)

Query:    42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR--ANNSTFDCQH 99
             V + LYYESLC     F++  L   +  + +  I+++ L P+GNA+ R  +    F CQH
Sbjct:    58 VNVNLYYESLCNGCRYFLVRELFPTW--LMVWEILNVTLVPYGNAQERNVSGRWEFTCQH 115

Query:   100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL--ELDPKPIV 157
             G  EC +N VEAC +D   E N  F  I CIE L  +      E C      ++ P  I+
Sbjct:   116 GEQECKMNKVEACLLDKL-EKNMAFLTIVCIEEL--DDMEKNLEPCLQIYAPKVSPDSIM 172

Query:   158 DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYE 198
             +C     G QL    A  T++L PPH+YVPWVVV+G+P+ E
Sbjct:   173 ECAMGDRGMQLLHINAQLTDALKPPHEYVPWVVVNGKPMTE 213

GO:0005764 "lysosome" evidence=ISS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISS

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|A6QPN6 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Bos taurus (taxid:9913)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 65/171 (38%), Positives = 92/171 (53%)

Query:    28 VSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK 87
             + AS   P DV   V + LYYE+LCP    F+I  L   +  + +L I+++ L P+GNA+
Sbjct:    44 LQASPQKP-DV-PLVNVSLYYEALCPGCREFLIRELFPTW--LMVLEILNVTLVPYGNAQ 99

Query:    88 IR--ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETC 145
              R  +    F CQHG  ECLLN VEAC +D   E    F  I C+E +  +      + C
Sbjct:   100 ERNVSGKWEFTCQHGERECLLNKVEACLLDQL-EQKIAFLTIVCLEEM--DDMEQNLKPC 156

Query:   146 FDKL--ELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQ 194
                   ++    I++C T   G QL    A  T++L PPH+YVPWVVV+G+
Sbjct:   157 LQIYAPKVSADSIMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGE 207

GO:0005764 "lysosome" evidence=ISS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISS

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	201
pfam03227	109	pfam03227, GILT, Gamma interferon inducible lysoso	3e-34

>gnl|CDD|217437 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase (GILT)

 Score =  117 bits (294), Expect = 3e-34
 Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 7/114 (6%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGP 101
           V + LYYESLCP    FI N L   + D+DLL I DL L P+G A+   + S   CQHGP
Sbjct: 1   VNITLYYESLCPDCQKFIRNQLYPAWFDLDLLDITDLKLVPFGKARCVDDGSVCTCQHGP 60

Query: 102 SECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWE--TCFDKLELDP 153
            EC LN ++AC I++ P      PFI C++      K +  E   C  +   + 
Sbjct: 61  EECKLNALQACVIETLPNQKLQLPFIRCMQG-----KTNYSEGFKCLKEYGPEK 109

This family includes the two characterized human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences. It also contains several other eukaryotic putative proteins with similarity to GILT. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
KOG3160	220	consensus Gamma-interferon inducible lysosomal thi	100.0
PF03227	108	GILT: Gamma interferon inducible lysosomal thiol r	100.0
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	98.99
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	98.87
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	98.79
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	98.4
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	97.71
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	97.49
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	97.3
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	97.28
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	97.26
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	96.47
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.44
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	96.04
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	95.21
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	94.24
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	89.72
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	87.76
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	86.48
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	85.89
cd03021	209	DsbA_GSTK DsbA family, Glutathione (GSH) S-transfe	83.69
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	83.69
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	82.66
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	80.68

>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-52  Score=350.80  Aligned_cols=187  Identities=45%  Similarity=0.848  Sum_probs=160.6

Q ss_pred             ccchhHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeee
Q 028973            5 SYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (201)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G   84 (201)
                      .|.++.++++|+.+.++++.-+-+-+    .+.+.+||+|++|||||||||++||++||+|+|.. .+.+++||++||||
T Consensus         8 ~~~~~~~~~~F~c~~~~~~~~~~~~~----~~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~-~~~~~idl~lvPfG   82 (220)
T KOG3160|consen    8 KYPSLAILSFFVCLLLFSFLLGILVA----KGSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDN-LLPSILDLTLVPFG   82 (220)
T ss_pred             hcccchhhheeeecchHhhhhhheee----ccccCCeeEEEEEEEecCccHHHHHHHHHHHHHhh-cccceeEEEEEccC
Confidence            45566666665544444433222221    35556699999999999999999999999999997 47999999999999


Q ss_pred             cceecCCCCceeecCChhhhhhhHhhhhhcccccCcccccceeeccccccccCcchhHHHHHhhcCCCchhhhhcccCch
Q 028973           85 NAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGY  164 (201)
Q Consensus        85 ~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~  164 (201)
                      ||+..+++++|+||||+.||.+|++|+|+|++++++.++++||.||++.   ...+.+.+|++..+.++..|++|++|++
T Consensus        83 na~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~l~~~~~~l~~i~C~~~~---~~~~~~~~C~~~~~~~~~~i~~Ca~s~~  159 (220)
T KOG3160|consen   83 NAQCRNDGGTFTCQHGEEECKLNKLQACVIDTLPDQSDQLPFIRCIQGK---QKLSEAEDCLEKYGLNEKKIRECANSRL  159 (220)
T ss_pred             CceeecCceEEEecCCHHHHhhhHHHHHHHHhhhchHhhhceehhhhcc---cchhHHHHHHhhcCCCHHHHHHHhcCch
Confidence            9999876699999999999999999999999999999999999999982   2445677899999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCCCCceeeEEEECCEEeccc
Q 028973          165 GTQLELKYAAETNSLVPPHQYVPWVVVDGQPLYEV  199 (201)
Q Consensus       165 G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~d~  199 (201)
                      |.+|+.+++.+|..+.|+|.|||||+|||+++.|+
T Consensus       160 g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~~~~~~  194 (220)
T KOG3160|consen  160 GAKLLLKYAQETAALAPPHPWVPWILVNGQPLQDA  194 (220)
T ss_pred             HHHHHHHHHHhhcccCCCCCCcCeEEECCcchHHH
Confidence            99999999999999999999999999999998764

>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]

Probab=100.00  E-value=7.1e-39  Score=243.98  Aligned_cols=107  Identities=40%  Similarity=0.769  Sum_probs=94.6

Q ss_pred             eEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhcccccCcc
Q 028973           42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELN  121 (201)
Q Consensus        42 V~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~~~~~~  121 (201)
                      |+|+|||||+||||++||++||.|+|..+++.++|||+|||||||+...++.+|+|||||.||+||++|+|+++++++..
T Consensus         1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~~   80 (108)
T PF03227_consen    1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDTN   80 (108)
T ss_pred             CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCChh
Confidence            78999999999999999999999988555699999999999999998765457999999999999999999999999888


Q ss_pred             cccceeeccccccccCcchhHHHHHhhcCC
Q 028973          122 KHFPFIYCIESLVYEHKYSQWETCFDKLEL  151 (201)
Q Consensus       122 ~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~  151 (201)
                      .+|+||.||++...  ...... |+++.+.
T Consensus        81 ~~~~~i~Cm~~~~~--~~~~~~-Ca~~~~~  107 (108)
T PF03227_consen   81 AALPFIACMESSQD--FPKAIK-CAKKYGI  107 (108)
T ss_pred             hhcCEEEEEcCCCC--Cchhhh-hHHhcCC
Confidence            88999999998743  223333 9998875

It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=98.99  E-value=3.8e-09  Score=81.69  Aligned_cols=140  Identities=13%  Similarity=0.065  Sum_probs=92.4

Q ss_pred             CCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhccc
Q 028973           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (201)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~  116 (201)
                      ..+.+++|.+|..-.||+|++|- ..|.+.+.+  ..+ +++.++||.-....   .          -..-+.-.|+...
T Consensus         2 ~~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~~--~~~-~~~~~~~~p~~~~~---~----------~~~~~~~~~~~~~   64 (154)
T cd03023           2 NPNGDVTIVEFFDYNCGYCKKLA-PELEKLLKE--DPD-VRVVFKEFPILGES---S----------VLAARVALAVWKN   64 (154)
T ss_pred             CCCCCEEEEEEECCCChhHHHhh-HHHHHHHHH--CCC-ceEEEEeCCccCcc---h----------HHHHHHHHHHHHh
Confidence            45689999999999999999994 567666654  443 66666666321110   0          0111222233221


Q ss_pred             ccCcccccceeeccccccccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEe
Q 028973          117 WPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL  196 (201)
Q Consensus       117 ~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~  196 (201)
                        ++..+++|..=+.........+.+...+...|++.+.+.+|.++++..+.+.+..+....+  ++..+||++|||+.+
T Consensus        65 --~~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gi~gtPt~~v~g~~~  140 (154)
T cd03023          65 --GPGKYLEFHNALMATRGRLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARAL--GITGTPAFIIGDTVI  140 (154)
T ss_pred             --ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHc--CCCcCCeEEECCEEe
Confidence              3345566654443322111223456788999999999999999988888888888777665  478999999999976


Q ss_pred             c
Q 028973          197 Y  197 (201)
Q Consensus       197 ~  197 (201)
                      .
T Consensus       141 ~  141 (154)
T cd03023         141 P  141 (154)
T ss_pred             c
Confidence            4

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.87  E-value=1.1e-08  Score=81.75  Aligned_cols=137  Identities=18%  Similarity=0.067  Sum_probs=94.1

Q ss_pred             CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhccccc
Q 028973           39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWP  118 (201)
Q Consensus        39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~~~  118 (201)
                      +.+|+|.+|+.-.||+|++| ...+.+.+.+  ..+.+.|+++|.........             ...+....+..   
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~-------------~aa~a~~aa~~---   74 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNF-EPILEAWVKK--LPKDVKFEKVPVVFGGGEGE-------------PLARAFYAAEA---   74 (178)
T ss_pred             CCCcEEEEEECCCCcchhhh-hHHHHHHHHh--CCCCceEEEcCCccccccch-------------HHHHHHHHHHH---
Confidence            68999999999999999999 5778888887  67889999999864322100             11222222211   


Q ss_pred             Ccccccceeeccccccc-----cCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECC
Q 028973          119 ELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG  193 (201)
Q Consensus       119 ~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING  193 (201)
                       ...++.|..=+.....     ....+.+...+...|++.+.+.+|.++++-.+.+.+..+....+  ++..+||++|||
T Consensus        75 -~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~--gi~gTPt~iInG  151 (178)
T cd03019          75 -LGLEDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY--KITGVPAFVVNG  151 (178)
T ss_pred             -cCcHhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCCCCeEEECC
Confidence             1122333332222111     01134577899999999999999999888777787777776654  478999999999


Q ss_pred             EEec
Q 028973          194 QPLY  197 (201)
Q Consensus       194 ~~~~  197 (201)
                      +.+.
T Consensus       152 ~~~~  155 (178)
T cd03019         152 KYVV  155 (178)
T ss_pred             EEEE
Confidence            9864

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=98.79  E-value=7.6e-09  Score=81.25  Aligned_cols=144  Identities=13%  Similarity=0.103  Sum_probs=93.7

Q ss_pred             CCCCCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccC--CcceeEEEEeeecceecCCCCceeecCChhhhhhhHh
Q 028973           32 RTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTV  109 (201)
Q Consensus        32 ~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l--~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~  109 (201)
                      +...|..+.++.|++|..-.||+|++|. ..|.+++++  +  .+.+.+.++|+--....             ...+-.+
T Consensus         4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~-~~~~~~~~~--~i~~~~v~~~~~~~~~~~~~-------------~~~a~~~   67 (162)
T PF13462_consen    4 DPTIGNPDAPITVTEFFDFQCPHCAKFH-EELEKLLKK--YIDPGKVKFVFRPVPLDKHS-------------SLRAAMA   67 (162)
T ss_dssp             SEEES-TTTSEEEEEEE-TTSHHHHHHH-HHHHHHHHH--HTTTTTEEEEEEESSSSHHH-------------HHHHHHH
T ss_pred             CCeecCCCCCeEEEEEECCCCHhHHHHH-HHHhhhhhh--ccCCCceEEEEEEccccchh-------------HHHHHHH
Confidence            3446788999999999999999999995 556677776  5  67888888888322211             3346667


Q ss_pred             hhhhcccccCcccccceeeccccccccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEE
Q 028973          110 EACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWV  189 (201)
Q Consensus       110 qaCal~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I  189 (201)
                      ..|+.+.  + +.++.+..-+.+.... ... .+.=+...+.+.+.+.+|+++.+-...+.+..+.....  ++..+|+|
T Consensus        68 ~~~~~~~--~-~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~tPt~  140 (162)
T PF13462_consen   68 AECVADQ--G-KYFWFFHELLFSQQEN-FEN-KKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQL--GITGTPTF  140 (162)
T ss_dssp             HHHHHHH--T-HHHHHHHHHHHHHCHS-TSS-HHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHH--T-SSSSEE
T ss_pred             HHHHHHH--h-HHHHHHHHHHHHhhhc-cch-hHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHc--CCccccEE
Confidence            7777555  2 3344444444433221 111 12222344555788999999887777776666666554  47899999


Q ss_pred             EECCEEecc
Q 028973          190 VVDGQPLYE  198 (201)
Q Consensus       190 ~ING~~~~d  198 (201)
                      +|||+++.+
T Consensus       141 ~inG~~~~~  149 (162)
T PF13462_consen  141 FINGKYVVG  149 (162)
T ss_dssp             EETTCEEET
T ss_pred             EECCEEeCC
Confidence            999999854

...

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=98.40  E-value=2.6e-06  Score=71.16  Aligned_cols=142  Identities=11%  Similarity=-0.005  Sum_probs=82.4

Q ss_pred             CCceEEEEEEEecChhhHHHHHHhH--HHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhccc
Q 028973           39 NSKVKLGLYYESLCPYSANFIINYL--VKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (201)
Q Consensus        39 ~~kV~V~vyyESlCPd~~~Fi~~qL--~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~  116 (201)
                      ..+.+|..|..=.||+|.+|- ..|  .+.|.+ .+.+-+.+..+|+.-.... +         +.--.......|+-..
T Consensus        36 ~~~~~VvEffdy~CphC~~~~-~~l~~~~~~~~-~~~~~v~~~~~~~~f~~~~-~---------~~~~~a~~~a~~~~~~  103 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFE-EVYHVSDNVKK-KLPEGTKMTKYHVEFLGPL-G---------KELTQAWAVAMALGVE  103 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhc-ccccchHHHHH-hCCCCCeEEEecccccchh-h---------HHHHHHHHHHHHhCcH
Confidence            457889999999999999993 333  356655 4566666665554211100 0         0000011111111000


Q ss_pred             ccCcccccceeeccccccccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEe
Q 028973          117 WPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL  196 (201)
Q Consensus       117 ~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~  196 (201)
                      -.-....++.+   +........+.+...+...|+|.+.+.+|.++..-.+.+.+..+.+..+  +++.||+++|||+++
T Consensus       104 ~k~~~~lf~~i---~~~~~~~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~--gI~gtPtfiInGky~  178 (207)
T PRK10954        104 DKVTPPLFEGV---QKTQTIQSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLRGVPAMFVNGKYM  178 (207)
T ss_pred             HHHHHHHHHHH---HccCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEECCEEE
Confidence            00000111222   1111111223466778889999999999999987777777777776654  579999999999986


Q ss_pred             c
Q 028973          197 Y  197 (201)
Q Consensus       197 ~  197 (201)
                      -
T Consensus       179 v  179 (207)
T PRK10954        179 V  179 (207)
T ss_pred             E
Confidence            3

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=97.71  E-value=0.00031  Score=57.22  Aligned_cols=148  Identities=15%  Similarity=0.128  Sum_probs=91.3

Q ss_pred             EEEEEEecChhhHHHHHHhHHHHHhhccCC--cceeEEEEeeecceecC--CC---CceeecCChh--------------
Q 028973           44 LGLYYESLCPYSANFIINYLVKIFEDVDLL--SIVDLHLSPWGNAKIRA--NN---STFDCQHGPS--------------  102 (201)
Q Consensus        44 V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~--~~idl~lvP~G~a~~~~--~~---~~f~CQHG~~--------------  102 (201)
                      |++|+.-.||.|--. ..+|....+.  +.  +-++|++.||+-.....  ++   ..+.=++|..              
T Consensus         1 I~~~~D~~cP~cyl~-~~~l~~~~~~--~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a   77 (201)
T cd03024           1 IDIWSDVVCPWCYIG-KRRLEKALAE--LGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAA   77 (201)
T ss_pred             CeEEecCcCccHHHH-HHHHHHHHHh--CCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            579999999999988 4678777765  43  35899999996332211  10   0000011110              


Q ss_pred             -----------hhhhhHhhhhhcccc-cCcccccceeecccccccc-----CcchhHHHHHhhcCCCchhhhhcccCchh
Q 028973          103 -----------ECLLNTVEACAIDSW-PELNKHFPFIYCIESLVYE-----HKYSQWETCFDKLELDPKPIVDCYTSGYG  165 (201)
Q Consensus       103 -----------EC~gN~~qaCal~~~-~~~~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G  165 (201)
                                 .-..|...+|.+-.. .....+.+|..-++.....     ...+.+...+...|+|.+.+.++.++++.
T Consensus        78 ~~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~  157 (201)
T cd03024          78 AAEGLEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEY  157 (201)
T ss_pred             HHcCCcccCCCCccCCcHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCccc
Confidence                       000133333222111 1123455665555543211     12234678899999999999999999988


Q ss_pred             HHHHHHHHHHhccCCCCCceeeEEEECCEEe
Q 028973          166 TQLELKYAAETNSLVPPHQYVPWVVVDGQPL  196 (201)
Q Consensus       166 ~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~  196 (201)
                      ++.+.+..++...+  ++..+||++|||+++
T Consensus       158 ~~~~~~~~~~a~~~--gv~G~Pt~vv~g~~~  186 (201)
T cd03024         158 ADEVRADEARARQL--GISGVPFFVFNGKYA  186 (201)
T ss_pred             chHHHHHHHHHHHC--CCCcCCEEEECCeEe
Confidence            88888888776654  589999999999854

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=97.49  E-value=0.00055  Score=55.31  Aligned_cols=148  Identities=16%  Similarity=0.136  Sum_probs=89.6

Q ss_pred             eEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCC-------------------CceeecCChh
Q 028973           42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANN-------------------STFDCQHGPS  102 (201)
Q Consensus        42 V~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~-------------------~~f~CQHG~~  102 (201)
                      ++|.+|+.-+||.|-.. ..+|..+.+.  +...++|++.+++=.......                   .+..-+.++.
T Consensus         1 ~~i~~~~D~~cp~c~~~-~~~l~~l~~~--~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   77 (193)
T cd03025           1 LELYYFIDPLCGWCYGF-EPLLEKLKEE--YGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYL   77 (193)
T ss_pred             CeEEEEECCCCchhhCc-hHHHHHHHHH--hCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhH
Confidence            47899999999999988 4566666654  544588888877633221100                   0000011111


Q ss_pred             hhh---hhHhhhhhccc---ccCcccccceeeccccccc-----cCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHH
Q 028973          103 ECL---LNTVEACAIDS---WPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELK  171 (201)
Q Consensus       103 EC~---gN~~qaCal~~---~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~  171 (201)
                      +=.   .|...++..-.   .....+..+|..-++....     .+..+.....+...|+|.+.+.++.++.+.++.+.+
T Consensus        78 ~~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~~  157 (193)
T cd03025          78 ELLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQE  157 (193)
T ss_pred             hcccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHH
Confidence            000   01111211110   0122355666666654311     122235678899999999999999999999999998


Q ss_pred             HHHHhccCCCCCceeeEEEECCE
Q 028973          172 YAAETNSLVPPHQYVPWVVVDGQ  194 (201)
Q Consensus       172 ~~~~T~~l~p~~~~vP~I~ING~  194 (201)
                      ..+...++  ++..+||++|++.
T Consensus       158 ~~~~a~~~--gv~g~Ptfvv~~~  178 (193)
T cd03025         158 DQKLAREL--GINGFPTLVLEDD  178 (193)
T ss_pred             HHHHHHHc--CCCccCEEEEEeC
Confidence            88887665  4789999999654

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=97.30  E-value=0.00032  Score=56.48  Aligned_cols=145  Identities=17%  Similarity=0.124  Sum_probs=83.0

Q ss_pred             EEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeeccee---cCC--CCc--------------------eee
Q 028973           43 KLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKI---RAN--NST--------------------FDC   97 (201)
Q Consensus        43 ~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~---~~~--~~~--------------------f~C   97 (201)
                      +|++|+.-.||.|-.+. ..|..+...  ..+ ++|++.||.-...   ..+  ...                    +.-
T Consensus         1 ~i~~~~D~~Cp~cy~~~-~~l~~l~~~--~~~-~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~   76 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLAS-PRLRKLRAE--YPD-VEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPF   76 (193)
T ss_dssp             EEEEEEBTTBHHHHHHH-HHHHHHHHH--HTT-CEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--T
T ss_pred             CEEEEEeCCCHHHHHHH-HHHHHHHHH--hcC-CcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCcc
Confidence            68999999999999994 567766664  323 8999999852222   111  001                    000


Q ss_pred             cCChhhhhhhHhhhhhc-ccccCcccccceeeccccc-----cccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHH
Q 028973           98 QHGPSECLLNTVEACAI-DSWPELNKHFPFIYCIESL-----VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELK  171 (201)
Q Consensus        98 QHG~~EC~gN~~qaCal-~~~~~~~~~~~fI~C~~~~-----~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~  171 (201)
                      ...+.. .+|-..+..+ ..........++..=+.+.     ...+..+.+...+...|+|.+.+.+-.+++.+++.+.+
T Consensus        77 ~~~~~~-~~~s~~a~~~~~~a~~~~~~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~  155 (193)
T PF01323_consen   77 NFPPPF-PGNSRPAHRAAYAAQEQGKADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDSPEVKAALEE  155 (193)
T ss_dssp             BTSSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHH
T ss_pred             cCCchh-hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHHHH
Confidence            000000 0122222221 1111111112222222111     11122344678899999999999999999999999998


Q ss_pred             HHHHhccCCCCCceeeEEEECCE
Q 028973          172 YAAETNSLVPPHQYVPWVVVDGQ  194 (201)
Q Consensus       172 ~~~~T~~l~p~~~~vP~I~ING~  194 (201)
                      ..++..++  ++..|||++|||+
T Consensus       156 ~~~~a~~~--gv~GvP~~vv~g~  176 (193)
T PF01323_consen  156 DTAEARQL--GVFGVPTFVVNGK  176 (193)
T ss_dssp             HHHHHHHT--TCSSSSEEEETTT
T ss_pred             HHHHHHHc--CCcccCEEEECCE
Confidence            88887665  4899999999998

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.0015  Score=55.18  Aligned_cols=146  Identities=16%  Similarity=0.162  Sum_probs=88.9

Q ss_pred             CCCCCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCc-ceeEEEEeeecceecCCCCceeecCChhhhhhhHhh
Q 028973           32 RTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLS-IVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVE  110 (201)
Q Consensus        32 ~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~-~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~q  110 (201)
                      +...+....+|+|.+|.+-.||+|.+.+ ..|...+..  ..+ ...++.+||-.-...      .|++      +....
T Consensus        76 ~~~~G~~~~~v~v~~f~d~~Cp~C~~~~-~~l~~~~i~--~~~~~~~~~~~~f~~~~~~------~~~~------a~~~~  140 (244)
T COG1651          76 DVVLGNPYAPVTVVEFFDYTCPYCKEAF-PELKKKYID--DGKVRLVLREFPFLDPACP------YCRR------AAQAA  140 (244)
T ss_pred             cccccCCCCCceEEEEecCcCccHHHHH-HHHHHHhhh--cCCCceEEEEeecCCCCcH------HHHH------HHHHH
Confidence            3446667779999999999999996664 344444332  222 234444444322110      1443      67777


Q ss_pred             hhhcccccCcccccceeeccccccccCcchhHHHHHhhcC-CC--c--hhhhhcccCchhHHHHHHHHHHhccCCCCCce
Q 028973          111 ACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLE-LD--P--KPIVDCYTSGYGTQLELKYAAETNSLVPPHQY  185 (201)
Q Consensus       111 aCal~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g-~~--~--~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~  185 (201)
                      .|+.+.-.  .++|.|..=+.+.... ....+..|..... ..  .  .....|.+......+..+..+....+  +++.
T Consensus       141 ~~~~~~~~--~~y~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~--gv~g  215 (244)
T COG1651         141 RCAADQGI--VRYWAFHDALFGSQAE-AWAASILCAKDLAKADLAALDEGKKAKLNQKACDALIAKNYKLAQQL--GVNG  215 (244)
T ss_pred             HHhccccc--hhHHHHHHHHhhcccc-chhhhhhhhhhhhhhhHHHHHhhhhhccChHHHHHHHHHHHHHHHhc--CCCc
Confidence            88855432  4688888888765421 2333445554332 11  1  46677766445667777777665554  4899


Q ss_pred             eeEEEECCEEec
Q 028973          186 VPWVVVDGQPLY  197 (201)
Q Consensus       186 vP~I~ING~~~~  197 (201)
                      +|+++|||+.++
T Consensus       216 TPt~~v~~~~~~  227 (244)
T COG1651         216 TPTFIVNGKLVP  227 (244)
T ss_pred             CCeEEECCeeec
Confidence            999999998653

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=97.26  E-value=0.0011  Score=54.37  Aligned_cols=143  Identities=15%  Similarity=0.115  Sum_probs=83.6

Q ss_pred             EEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCC-CceeecCChh--hhhhhHhhhhh---cccccC
Q 028973           46 LYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANN-STFDCQHGPS--ECLLNTVEACA---IDSWPE  119 (201)
Q Consensus        46 vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~-~~f~CQHG~~--EC~gN~~qaCa---l~~~~~  119 (201)
                      +|+--+||.|-.+ ...|..+...  +...+++++||.|+.+..... ....+.+..-  +=......+|.   ...+..
T Consensus         2 ~F~dPlc~~C~~~-E~~l~kl~~~--~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg   78 (176)
T PF13743_consen    2 LFVDPLCSWCWGF-EPELRKLKEE--YGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQG   78 (176)
T ss_dssp             EEE-TT-HHHHHH-HHHHHHHHHH--S-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT
T ss_pred             eeeCCCChHHHHh-HHHHHHHHHH--cCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhC
Confidence            4677799999998 4556666665  899999999999998753220 1111111111  11122333331   111224


Q ss_pred             cccccceeecccccccc-----CcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECC
Q 028973          120 LNKHFPFIYCIESLVYE-----HKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG  193 (201)
Q Consensus       120 ~~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING  193 (201)
                      .++...|+.-|++....     ...+....||++.|+|.+.+.+=.+++..++.+.+--+.+..+.  ++..|+++|.+
T Consensus        79 ~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~~D~~la~~m~--I~~~Ptlvi~~  155 (176)
T PF13743_consen   79 KKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQEDQQLAREMG--ITGFPTLVIFN  155 (176)
T ss_dssp             -H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTT---SSSSEEEEE-
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CCCCCEEEEEe
Confidence            46677888888764321     12245779999999999999888899999999998888888776  78999999855

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=96.47  E-value=0.0059  Score=49.09  Aligned_cols=55  Identities=16%  Similarity=0.058  Sum_probs=47.6

Q ss_pred             hhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEe
Q 028973          140 SQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL  196 (201)
Q Consensus       140 ~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~  196 (201)
                      +.+..+++..|+|.+.+.++.++++..+.+.+..+...++  ++..||+++|||+.+
T Consensus       124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~--gi~gvPtfvv~g~~~  178 (192)
T cd03022         124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR--GVFGVPTFVVDGEMF  178 (192)
T ss_pred             HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCCcCCeEEECCeee
Confidence            3467899999999999999999998888888888776655  589999999999986

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.44  E-value=0.0097  Score=41.51  Aligned_cols=41  Identities=22%  Similarity=0.314  Sum_probs=33.0

Q ss_pred             EEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecce
Q 028973           44 LGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK   87 (201)
Q Consensus        44 V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~   87 (201)
                      |.+|+.-.||.|..+ ..+|.+....  ..+.++++++|+.-..
T Consensus         1 i~~f~d~~Cp~C~~~-~~~l~~~~~~--~~~~~~~~~~~~~~~~   41 (98)
T cd02972           1 IVEFFDPLCPYCYLF-EPELEKLLYA--DDGGVRVVYRPFPLLG   41 (98)
T ss_pred             CeEEECCCCHhHHhh-hHHHHHHHhh--cCCcEEEEEeccccCC
Confidence            568999999999999 4678887643  6788999999987554

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.04  E-value=0.025  Score=48.50  Aligned_cols=154  Identities=15%  Similarity=0.147  Sum_probs=96.6

Q ss_pred             CCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCccee--EEEEeeeccee-cCC----------CCce----eecCC
Q 028973           38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVD--LHLSPWGNAKI-RAN----------NSTF----DCQHG  100 (201)
Q Consensus        38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~id--l~lvP~G~a~~-~~~----------~~~f----~CQHG  100 (201)
                      ...+++|+||..-.||.|--. +..|-.....  +.+.++  ++..||--... ...          .++.    .=-|.
T Consensus         2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~~--~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~   78 (225)
T COG2761           2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALAE--YPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHA   78 (225)
T ss_pred             CCceEEEEEEeCCcCchhhcC-HHHHHHHHHh--cCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHH
Confidence            357899999999999999766 5566666665  555544  55566642211 000          0000    00000


Q ss_pred             h-----hh-----------hhhhHhhhhhccccc-Ccc-cccceeecccccccc-----CcchhHHHHHhhcCCCchhhh
Q 028973          101 P-----SE-----------CLLNTVEACAIDSWP-ELN-KHFPFIYCIESLVYE-----HKYSQWETCFDKLELDPKPIV  157 (201)
Q Consensus       101 ~-----~E-----------C~gN~~qaCal~~~~-~~~-~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~g~~~~~i~  157 (201)
                      .     .|           =..|-+.+|-+-++- ... .+..|+.=+.+..+.     +..+.+-.||..+|+|.+.++
T Consensus        79 ~~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~  158 (225)
T COG2761          79 RLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFK  158 (225)
T ss_pred             HHHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHH
Confidence            0     01           123445666555442 122 467777766554332     234557799999999999999


Q ss_pred             hcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEe
Q 028973          158 DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL  196 (201)
Q Consensus       158 ~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~  196 (201)
                      +=..++...+=++.-.+....+  .++.||+++|+|++.
T Consensus       159 ~~L~s~~~~~avr~d~~~A~e~--gI~gVP~fv~d~~~~  195 (225)
T COG2761         159 ADLASDAAKDAVRQDEAAAQEM--GIRGVPTFVFDGKYA  195 (225)
T ss_pred             HHHhChHHHHHHHHHHHHHHHC--CCccCceEEEcCcEe
Confidence            9999988888777777776654  589999999977654

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=95.21  E-value=0.11  Score=44.43  Aligned_cols=45  Identities=7%  Similarity=0.145  Sum_probs=32.3

Q ss_pred             CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeec
Q 028973           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN   85 (201)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~   85 (201)
                      .+..+.+.+|.+|..-.||+|+++- .+|.+. .+    .-+.+++++|.-
T Consensus       102 ~g~~~~k~~I~vFtDp~CpyCkkl~-~~l~~~-~~----~~v~v~~~~~P~  146 (232)
T PRK10877        102 YKAPQEKHVITVFTDITCGYCHKLH-EQMKDY-NA----LGITVRYLAFPR  146 (232)
T ss_pred             ecCCCCCEEEEEEECCCChHHHHHH-HHHHHH-hc----CCeEEEEEeccC
Confidence            3455778899999999999999994 445443 32    227777776664

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=94.24  E-value=0.099  Score=45.19  Aligned_cols=47  Identities=15%  Similarity=0.231  Sum_probs=37.8

Q ss_pred             CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecc
Q 028973           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNA   86 (201)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a   86 (201)
                      .+..+.+..|.||..-.||+|++| ...+.|..+.    ..+.++++|++-.
T Consensus       112 ~g~~~ak~~I~vFtDp~CpyC~kl-~~~l~~~~~~----g~V~v~~ip~~~l  158 (251)
T PRK11657        112 DGKADAPRIVYVFADPNCPYCKQF-WQQARPWVDS----GKVQLRHILVGII  158 (251)
T ss_pred             ccCCCCCeEEEEEECCCChhHHHH-HHHHHHHhhc----CceEEEEEecccc
Confidence            456678999999999999999999 4667776654    4588999998753

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=89.72  E-value=0.64  Score=38.08  Aligned_cols=46  Identities=17%  Similarity=0.192  Sum_probs=35.2

Q ss_pred             CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecce
Q 028973           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK   87 (201)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~   87 (201)
                      .+..+.++.|.+|..-.||+|+++. ..|.+  .    .+-+.++++||+-..
T Consensus        72 ~g~~~~~~~i~~f~D~~Cp~C~~~~-~~l~~--~----~~~v~v~~~~~p~~~  117 (197)
T cd03020          72 YGKGNGKRVVYVFTDPDCPYCRKLE-KELKP--N----ADGVTVRIFPVPILG  117 (197)
T ss_pred             EcCCCCCEEEEEEECCCCccHHHHH-HHHhh--c----cCceEEEEEEcCcCC
Confidence            4566789999999999999999994 56665  2    245788888886443

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=87.76  E-value=1.1  Score=29.71  Aligned_cols=17  Identities=24%  Similarity=0.755  Sum_probs=15.8

Q ss_pred             eEEEEEEEecChhhHHH
Q 028973           42 VKLGLYYESLCPYSANF   58 (201)
Q Consensus        42 V~V~vyyESlCPd~~~F   58 (201)
                      |+|.+|+.+-||.|++.
T Consensus         1 ~~v~~f~~~~C~~C~~~   17 (67)
T cd02973           1 VNIEVFVSPTCPYCPDA   17 (67)
T ss_pred             CEEEEEECCCCCCcHHH
Confidence            78999999999999877

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=86.48  E-value=1.5  Score=29.90  Aligned_cols=27  Identities=22%  Similarity=0.528  Sum_probs=20.9

Q ss_pred             eEEEEEEEecChhhHHHHHHhHHHHHhh
Q 028973           42 VKLGLYYESLCPYSANFIINYLVKIFED   69 (201)
Q Consensus        42 V~V~vyyESlCPd~~~Fi~~qL~P~~~~   69 (201)
                      |+|.+|+-+-||.|+.. ...|..+...
T Consensus         1 ~~v~~f~~~~C~~C~~~-~~~l~~l~~~   27 (82)
T TIGR00411         1 VKIELFTSPTCPYCPAA-KRVVEEVAKE   27 (82)
T ss_pred             CEEEEEECCCCcchHHH-HHHHHHHHHH
Confidence            78999999999999987 3455555443

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=85.89  E-value=1.5  Score=34.14  Aligned_cols=45  Identities=16%  Similarity=0.192  Sum_probs=27.5

Q ss_pred             CCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeec
Q 028973           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN   85 (201)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~   85 (201)
                      .-..++++.|+.|+=||||++++ =.|..+.+   ....++++++.-..
T Consensus        38 ~~~~~~~ilvi~e~WCgD~~~~v-P~l~kiae---~~p~i~~~~i~rd~   82 (129)
T PF14595_consen   38 SIQKPYNILVITETWCGDCARNV-PVLAKIAE---ANPNIEVRIILRDE   82 (129)
T ss_dssp             T--S-EEEEEE--TT-HHHHHHH-HHHHHHHH---H-TTEEEEEE-HHH
T ss_pred             hcCCCcEEEEEECCCchhHHHHH-HHHHHHHH---hCCCCeEEEEEecC
Confidence            44678899999999999999985 34554444   34578888887653

>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates

Probab=83.69  E-value=1.8  Score=35.77  Aligned_cols=49  Identities=16%  Similarity=0.106  Sum_probs=36.5

Q ss_pred             HHHHhhcCCCchhhh---hcccCchhHHHHHHHHHHhccCCCCCceeeEEEECC
Q 028973          143 ETCFDKLELDPKPIV---DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG  193 (201)
Q Consensus       143 ~~Ca~~~g~~~~~i~---~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING  193 (201)
                      ..++...|+|++...   .-..++++++.+.+..++..+  -++..||+++||+
T Consensus       136 ~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~--~Gv~GVP~fvv~~  187 (209)
T cd03021         136 SVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALK--YGAFGLPWIVVTN  187 (209)
T ss_pred             HHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHH--cCCCCCCEEEEEc
Confidence            589999999865544   444677777777777766544  4689999999964

It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=83.69  E-value=1.5  Score=33.25  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=24.5

Q ss_pred             CchhHHHHHHHHHHhccCCCCCceeeEEEECCEEec
Q 028973          162 SGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY  197 (201)
Q Consensus       162 ~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~  197 (201)
                      .++|.+++....+.|.+     +.||.|+|||+.+|
T Consensus        49 ~~~g~eiq~~l~~~tg~-----~tvP~vFI~Gk~iG   79 (104)
T KOG1752|consen   49 DEDGSEIQKALKKLTGQ-----RTVPNVFIGGKFIG   79 (104)
T ss_pred             CCCcHHHHHHHHHhcCC-----CCCCEEEECCEEEc
Confidence            36777888888776642     48999999999986

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=82.66  E-value=2.9  Score=30.87  Aligned_cols=50  Identities=18%  Similarity=0.147  Sum_probs=33.6

Q ss_pred             HHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEec
Q 028973          142 WETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY  197 (201)
Q Consensus       142 ~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~  197 (201)
                      .++-.+..|++... ..--..+.+.+++.+..+.|.     ...||.|+|||+++|
T Consensus        24 ak~~L~~~~i~~~~-vdid~~~~~~~~~~~l~~~tg-----~~tvP~Vfi~g~~iG   73 (99)
T TIGR02189        24 VKRLLLTLGVNPAV-HEIDKEPAGKDIENALSRLGC-----SPAVPAVFVGGKLVG   73 (99)
T ss_pred             HHHHHHHcCCCCEE-EEcCCCccHHHHHHHHHHhcC-----CCCcCeEEECCEEEc
Confidence            34455666765542 222245677888888877662     468999999999986

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=80.68  E-value=0.86  Score=37.15  Aligned_cols=60  Identities=17%  Similarity=0.222  Sum_probs=35.5

Q ss_pred             CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcc---eeEEEEeeecceecCCCCceeecCChh
Q 028973           39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSI---VDLHLSPWGNAKIRANNSTFDCQHGPS  102 (201)
Q Consensus        39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~---idl~lvP~G~a~~~~~~~~f~CQHG~~  102 (201)
                      ..||-+-.|.-.-||.||.| +-.|.++|+.  +.+-   +.|-+|-.-....+. ..-+.++||+-
T Consensus        32 ~gKvV~lyFsA~wC~pCR~F-TP~Lk~fYe~--l~~~~~~fEVvfVS~D~~~~~~-~~y~~~~~~~W   94 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDF-TPILKDFYEE--LKDNAAPFEVVFVSSDRDEESL-DEYMLEHHGDW   94 (157)
T ss_pred             CCcEEEEEEEEEECCchhhC-CchHHHHHHH--HHhcCCceEEEEEecCCCHHHH-HHHHHhcCCCe
Confidence            34766666667789999999 7888888876  5443   443333322222111 13456666553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	99.1
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	99.03
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.99
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	98.95
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.9
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	98.88
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.82
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.82
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.79
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.73
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.65
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	98.51
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.46
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.43
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	98.39
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	98.19
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	98.12
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	98.05
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	97.91
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	97.75
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	97.62
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	97.47
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	97.27
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	96.14
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	96.06
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	95.11
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	94.61
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	91.13
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	89.24
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	84.92
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	84.73
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	82.29

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=99.10  E-value=3.8e-10  Score=92.36  Aligned_cols=148  Identities=10%  Similarity=0.062  Sum_probs=105.3

Q ss_pred             CCCCCCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccC--CcceeEEEEeeecceecCCCCceeecCChhhhhhhH
Q 028973           31 SRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNT  108 (201)
Q Consensus        31 ~~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l--~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~  108 (201)
                      .+...+..+.+|+|.+|..-.||+|++| ...+.|.+.+ .+  .+.+.|.+.|+.-             ||+.-=.+-.
T Consensus        20 ~~~~~G~~~a~vtvvef~D~~CP~C~~~-~~~~~~~l~~-~~~~~g~v~~~~~~~p~-------------~~~~s~~Aa~   84 (202)
T 3gha_A           20 GQPVLGKDDAPVTVVEFGDYKCPSCKVF-NSDIFPKIQK-DFIDKGDVKFSFVNVMF-------------HGKGSRLAAL   84 (202)
T ss_dssp             TSCEESCTTCSEEEEEEECTTCHHHHHH-HHHTHHHHHH-HTTTTTSEEEEEEECCC-------------SHHHHHHHHH
T ss_pred             CCceecCCCCCEEEEEEECCCChhHHHH-HHHhhHHHHH-HhccCCeEEEEEEecCc-------------cchhHHHHHH
Confidence            3445788899999999999999999999 4667787764 24  3467777777642             1211111223


Q ss_pred             hhhhhcccccCcccccceeecccccccc-----CcchhHHHHHhh-cCCCchhhhhcccCchhHHHHHHHHHHhccCCCC
Q 028973          109 VEACAIDSWPELNKHFPFIYCIESLVYE-----HKYSQWETCFDK-LELDPKPIVDCYTSGYGTQLELKYAAETNSLVPP  182 (201)
Q Consensus       109 ~qaCal~~~~~~~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~-~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~  182 (201)
                      ...|+...  ++.++|+|..=++.....     ...+.+...+.. .|+|.+.+.+|.++......+.+..+...++  +
T Consensus        85 aa~a~~~~--~~~~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~--g  160 (202)
T 3gha_A           85 ASEEVWKE--DPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKM--N  160 (202)
T ss_dssp             HHHHHHHH--CGGGHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHhh--CHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--C
Confidence            33444332  457888888888765431     122346688888 8999999999999888888787777776655  4


Q ss_pred             CceeeEEEECCEEec
Q 028973          183 HQYVPWVVVDGQPLY  197 (201)
Q Consensus       183 ~~~vP~I~ING~~~~  197 (201)
                      ++.+|+++|||+++.
T Consensus       161 V~gtPtfvvnG~~~~  175 (202)
T 3gha_A          161 IQATPTIYVNDKVIK  175 (202)
T ss_dssp             CCSSCEEEETTEECS
T ss_pred             CCcCCEEEECCEEec
Confidence            899999999999874

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=99.03  E-value=3.5e-10  Score=93.27  Aligned_cols=148  Identities=11%  Similarity=0.112  Sum_probs=104.5

Q ss_pred             CCCCCCCCCCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccC--CcceeEEEEeeecceecCCCCceeecCChhhh
Q 028973           27 SVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSEC  104 (201)
Q Consensus        27 ~~~~~~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l--~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC  104 (201)
                      |.......++..+.+|+|.+|..-.||+|++| ...+.|.+++ ++  .+.+.|.+.+|--             |+.. =
T Consensus         2 ~~~~~~~~~G~~~a~vtivef~D~~Cp~C~~~-~~~~~~~l~~-~~i~~g~v~~v~r~~pl-------------~~~s-~   65 (205)
T 3gmf_A            2 SLADGHHLLGNPAAKLRLVEFVSYTCPHCSHF-EIESEGQLKI-GMVQPGKGAIEVRNFVR-------------DPID-M   65 (205)
T ss_dssp             -CCTTEEEESCTTCSEEEEEEECTTCHHHHHH-HHHHHHHHHH-HTTTTTSEEEEEEECCC-------------SHHH-H
T ss_pred             CCCCCCceecCCCCCeEEEEEECCCCHHHHHH-HHHHHHHHHH-HhccCCeEEEEEEeCCC-------------Ccch-H
Confidence            44555666888999999999999999999999 4678888873 14  4567766666621             1111 1


Q ss_pred             hhhHhhhhhcccccCcccccceeecccccccc-------Ccc---------------------hhHHHHHhhcCCCchhh
Q 028973          105 LLNTVEACAIDSWPELNKHFPFIYCIESLVYE-------HKY---------------------SQWETCFDKLELDPKPI  156 (201)
Q Consensus       105 ~gN~~qaCal~~~~~~~~~~~fI~C~~~~~~~-------~~~---------------------~~~~~Ca~~~g~~~~~i  156 (201)
                      .+.....|+     .+.++|+|..=++..+..       -..                     ..+...+...|+|.+.+
T Consensus        66 ~aa~aa~~~-----~~~~f~~~~~~Lf~~q~~~~~~~~~~~~~~~~~w~~~~~~~~l~~ia~~~~L~~~a~~~Gld~~~~  140 (205)
T 3gmf_A           66 TVALITNCV-----PPSRFFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRSTL  140 (205)
T ss_dssp             HHHHHHHHS-----CHHHHHHHHHHHHHTHHHHCHHHHHCCHHHHHTTSSSCHHHHHHHHHHHTTHHHHHHTTTCCHHHH
T ss_pred             HHHHHHHhc-----CHhHHHHHHHHHHHcCHHHHhcccccchhhhhccccchhHHHHHhccCHHHHHHHHHHcCCCHHHH
Confidence            233445565     467899998888765320       000                     12446777899999999


Q ss_pred             hhcccCchhHHHHHHHHHHh-ccCCCCCceeeEEEECCEEec
Q 028973          157 VDCYTSGYGTQLELKYAAET-NSLVPPHQYVPWVVVDGQPLY  197 (201)
Q Consensus       157 ~~C~~~~~G~~Ll~~~~~~T-~~l~p~~~~vP~I~ING~~~~  197 (201)
                      .+|.++......+.+..+.. .++  +++.+|+++|||+.+.
T Consensus       141 ~~~l~s~~~~~~v~~~~~~a~~~~--GV~GtPtfvvng~~~~  180 (205)
T 3gmf_A          141 DRCLSNEALAKKLAAETDEAINQY--NVSGTPSFMIDGILLA  180 (205)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHH--CCCSSSEEEETTEECT
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHc--CCccCCEEEECCEEEe
Confidence            99999988777777766665 554  4789999999999874

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.99  E-value=3.7e-09  Score=82.88  Aligned_cols=143  Identities=13%  Similarity=0.121  Sum_probs=99.8

Q ss_pred             CCCCCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhh
Q 028973           32 RTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEA  111 (201)
Q Consensus        32 ~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qa  111 (201)
                      +..++..+.||+|.+|+...||+|++|. ..|.+.+++  ..+ +.|.++++.-.             |+.-=...+...
T Consensus        14 ~~~~G~~~a~v~i~~f~d~~Cp~C~~~~-~~l~~l~~~--~~~-v~~~~~~~p~~-------------~~~s~~aa~~~~   76 (175)
T 3gyk_A           14 APVLGNPEGDVTVVEFFDYNCPYCRRAM-AEVQGLVDA--DPN-VRLVYREWPIL-------------GEGSDFAARAAL   76 (175)
T ss_dssp             SCEEECTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHH--CTT-EEEEEEECCCS-------------CHHHHHHHHHHH
T ss_pred             CCCcCCCCCCEEEEEEECCCCccHHHHH-HHHHHHHHh--CCC-EEEEEEeCCCC-------------CCChHHHHHHHH
Confidence            3446788899999999999999999995 567777775  555 66666665421             111112334444


Q ss_pred             hhcccccCcccccceeeccccccccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEE
Q 028973          112 CAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVV  191 (201)
Q Consensus       112 Cal~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~I  191 (201)
                      |+...    .++++|..=++.....-....+...++..|+|.+.+.+|.+++.....+.+..+....+  ++..+|+++|
T Consensus        77 ~a~~~----~~~~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~~i  150 (175)
T 3gyk_A           77 AARQQ----GKYEAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKL--GFNGTPSFVV  150 (175)
T ss_dssp             HGGGG----TCHHHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHH--TCCSSSEEEE
T ss_pred             HHHHH----hHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCccCCEEEE
Confidence            54332    44555554444332111234566889999999999999999999888888888777665  4789999999


Q ss_pred             CCEEec
Q 028973          192 DGQPLY  197 (201)
Q Consensus       192 NG~~~~  197 (201)
                      ||+.+.
T Consensus       151 ~g~~~~  156 (175)
T 3gyk_A          151 EDALVP  156 (175)
T ss_dssp             TTEEEC
T ss_pred             CCEEee
Confidence            998773

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=98.95  E-value=4.6e-09  Score=83.58  Aligned_cols=144  Identities=13%  Similarity=0.159  Sum_probs=94.8

Q ss_pred             CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCC--cceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhh
Q 028973           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL--SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEAC  112 (201)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~--~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaC  112 (201)
                      .+..+.+|+|.+|..-.||+|.+| ...|.|.+.+ .+.  +.+.|.+.||.-.             |+.-=...+.-.|
T Consensus         6 ~G~~~a~~~i~~f~D~~Cp~C~~~-~~~l~~~l~~-~~~~~~~v~~~~~~~p~~-------------~~~s~~aa~a~~~   70 (186)
T 3bci_A            6 TSSKNGKPLVVVYGDYKCPYCKEL-DEKVMPKLRK-NYIDNHKVEYQFVNLAFL-------------GKDSIVGSRASHA   70 (186)
T ss_dssp             -----CCCEEEEEECTTCHHHHHH-HHHHHHHHHH-HTTTTTSSEEEEEECCCS-------------CTTHHHHHHHHHH
T ss_pred             cCCCCCCeEEEEEECCCChhHHHH-HHHHHHHHHH-HhccCCeEEEEEEecCcC-------------CcchHHHHHHHHH
Confidence            566788999999999999999999 4567776643 132  3578888777421             1211123444555


Q ss_pred             hcccccCcccccceeecccccccc-----CcchhHHHHHhhcCCCchh---hhhcc--cCchhHHHHHHHHHHhccCCCC
Q 028973          113 AIDSWPELNKHFPFIYCIESLVYE-----HKYSQWETCFDKLELDPKP---IVDCY--TSGYGTQLELKYAAETNSLVPP  182 (201)
Q Consensus       113 al~~~~~~~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~g~~~~~---i~~C~--~~~~G~~Ll~~~~~~T~~l~p~  182 (201)
                      +...  .++++++|..=++.....     ...+.+...++..|+|.+.   +.+|.  ++......+.+..+....+  +
T Consensus        71 a~~~--~~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~--g  146 (186)
T 3bci_A           71 VLMY--APKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDN--H  146 (186)
T ss_dssp             HHHH--CGGGHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHT--T
T ss_pred             HHHh--CHHHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc--C
Confidence            5433  234566766655543211     1234566888999999998   99999  8877777777766665554  5


Q ss_pred             CceeeEEEECCEEec
Q 028973          183 HQYVPWVVVDGQPLY  197 (201)
Q Consensus       183 ~~~vP~I~ING~~~~  197 (201)
                      +..+|+++|||+.+.
T Consensus       147 v~GtPt~vvnG~~~~  161 (186)
T 3bci_A          147 IKTTPTAFINGEKVE  161 (186)
T ss_dssp             CCSSSEEEETTEECS
T ss_pred             CCCCCeEEECCEEcC
Confidence            899999999999874

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.90  E-value=4.7e-09  Score=83.39  Aligned_cols=139  Identities=14%  Similarity=0.029  Sum_probs=94.3

Q ss_pred             CCCC-CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhh
Q 028973           35 PSDV-NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACA  113 (201)
Q Consensus        35 ~~~~-~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCa  113 (201)
                      .+.. +.+|+|.+|+...||+|..|. ..|.+..++  ..+.+.++.+|+....   +          . =...+.-.|+
T Consensus        19 ~g~~~~a~v~i~~f~d~~Cp~C~~~~-~~l~~l~~~--~~~~v~~~~~p~~~~~---~----------s-~~a~~a~~~a   81 (193)
T 2rem_A           19 PFAPLAGKIEVVEIFGYTCPHCAHFD-SKLQAWGAR--QAKDVRFTLVPAVFGG---V----------W-DPFARAYLAA   81 (193)
T ss_dssp             CSSCCTTCEEEEEEECTTCHHHHHHH-HHHHHHHHT--SCTTEEEEEEECCCST---T----------H-HHHHHHHHHH
T ss_pred             CCCCCCCCeEEEEEECCCChhHhhhh-HHHHHHHHh--cCCceEEEEeCcccCC---C----------c-HHHHHHHHHH
Confidence            4555 789999999999999999995 567666665  6667888888874211   0          0 0122333343


Q ss_pred             cccccCcccccceeeccccccc--------cCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCce
Q 028973          114 IDSWPELNKHFPFIYCIESLVY--------EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQY  185 (201)
Q Consensus       114 l~~~~~~~~~~~fI~C~~~~~~--------~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~  185 (201)
                      ..    ..++++|..-++....        ....+.+...++..|+|.+.+.+|.++.+....+.+..+....+  ++..
T Consensus        82 ~~----~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~g  155 (193)
T 2rem_A           82 DV----LGVAKRSHTAMFEAIHEKGSVPIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKV--RPVG  155 (193)
T ss_dssp             HH----TTCHHHHHHHHHHHHHTTCCSCSTTCCHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH--CCSS
T ss_pred             HH----cCcHHHHHHHHHHHHHHhcccCcCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHh--CCCC
Confidence            22    1334455544443211        11234566888999999999999999988888887776666554  4899


Q ss_pred             eeEEEECCEEe
Q 028973          186 VPWVVVDGQPL  196 (201)
Q Consensus       186 vP~I~ING~~~  196 (201)
                      +|+++|||+.+
T Consensus       156 tPt~ving~~~  166 (193)
T 2rem_A          156 TPTIVVNGRYM  166 (193)
T ss_dssp             SSEEEETTTEE
T ss_pred             CCeEEECCEEE
Confidence            99999999875

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=98.88  E-value=2.8e-09  Score=89.06  Aligned_cols=146  Identities=9%  Similarity=0.049  Sum_probs=101.3

Q ss_pred             CCCCCCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccC-CcceeEEEEeeecceecCCCCceeecCChhhhhhhHh
Q 028973           31 SRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL-LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTV  109 (201)
Q Consensus        31 ~~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l-~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~  109 (201)
                      .+..++..+.+|+|.+|..-.||+|++|- ..+.|.+.++-+ .+.+.|.+.||.-..              .--.+-+.
T Consensus        30 ~~~~~G~~~A~vtIvef~Dy~CP~C~~~~-~~~~~~l~~~~~~~g~V~~v~~~~p~~~--------------~s~~Aa~a   94 (226)
T 3f4s_A           30 NDKLLGDPKAPILMIEYASLTCYHCSLFH-RNVFPKIKEKYIDTGKMLYIFRHFPLDY--------------RGLKAAML   94 (226)
T ss_dssp             TCCEESCTTCSEEEEEEECTTCHHHHHHH-HHTHHHHHHHHTTTTSEEEEEEECCCSH--------------HHHHHHHH
T ss_pred             CCCccCCCCCCEEEEEEECCCCHHHHHHH-HHHHHHHHHHcccCCeEEEEEEeCCCCh--------------hHHHHHHH
Confidence            45668889999999999999999999994 456776653112 245665555543100              01123445


Q ss_pred             hhhhcccccCcccccceeecccccccc------CcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhcc-CCCC
Q 028973          110 EACAIDSWPELNKHFPFIYCIESLVYE------HKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNS-LVPP  182 (201)
Q Consensus       110 qaCal~~~~~~~~~~~fI~C~~~~~~~------~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~-l~p~  182 (201)
                      ..|+    .++.++|+|..=++.....      ...+.+...++..|+|.+.+.+|.++......+.+..+...+ +  +
T Consensus        95 a~aa----~~~~~f~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~~--G  168 (226)
T 3f4s_A           95 SHCY----EKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKL--G  168 (226)
T ss_dssp             GGGC----CSHHHHHHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHH--C
T ss_pred             HHHh----hChHHHHHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHc--C
Confidence            5565    2456777877777654321      123456788999999999999999998888877777776655 4  4


Q ss_pred             CceeeEEEE---CCEEec
Q 028973          183 HQYVPWVVV---DGQPLY  197 (201)
Q Consensus       183 ~~~vP~I~I---NG~~~~  197 (201)
                      ++.+|+++|   ||+.+.
T Consensus       169 V~GtPtfvv~~~nG~~~~  186 (226)
T 3f4s_A          169 ITAVPIFFIKLNDDKSYI  186 (226)
T ss_dssp             CCSSCEEEEEECCTTCCC
T ss_pred             CCcCCEEEEEcCCCEEee
Confidence            789999999   999763

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.82  E-value=9.4e-09  Score=80.43  Aligned_cols=139  Identities=12%  Similarity=0.089  Sum_probs=86.1

Q ss_pred             CCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhccc
Q 028973           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (201)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~  116 (201)
                      +...+++|..|..-.||+|++| ...+.+..++  ..+.+.+.++|+--......            =..-+..+|+...
T Consensus        18 p~~~~~~vvEf~dy~Cp~C~~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~------------~~~a~a~~~~~~~   82 (184)
T 4dvc_A           18 PASSSPVVSEFFSFYCPHCNTF-EPIIAQLKQQ--LPEGAKFQKNHVSFMGGNMG------------QAMSKAYATMIAL   82 (184)
T ss_dssp             CCCSSCEEEEEECTTCHHHHHH-HHHHHHHHHT--SCTTCEEEEEECSSSSGGGH------------HHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCHhHHHH-hHHHHHHHhh--cCCceEEEEEecCCCCCchH------------HHHHHHHHHHHHc
Confidence            3456889999999999999999 4667666665  66667777666532111000            0011122222111


Q ss_pred             ccCcccccceeecccc----c-cccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEE
Q 028973          117 WPELNKHFPFIYCIES----L-VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVV  191 (201)
Q Consensus       117 ~~~~~~~~~fI~C~~~----~-~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~I  191 (201)
                          ..+..+..=+..    . ........+..=+...|+|.+.+.+|.+++.-...+.+..+....+  +++.+|+++|
T Consensus        83 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gTPtfiI  156 (184)
T 4dvc_A           83 ----EVEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDS--GLTGVPAVVV  156 (184)
T ss_dssp             ----TCHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH--TCCSSSEEEE
T ss_pred             ----CcHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCcCCEEEE
Confidence                111111111111    1 1111233455678889999999999999988888888777776665  4899999999


Q ss_pred             CCEEe
Q 028973          192 DGQPL  196 (201)
Q Consensus       192 NG~~~  196 (201)
                      ||+++
T Consensus       157 NGky~  161 (184)
T 4dvc_A          157 NNRYL  161 (184)
T ss_dssp             TTTEE
T ss_pred             CCEEe
Confidence            99865

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.82  E-value=2.6e-08  Score=79.64  Aligned_cols=136  Identities=10%  Similarity=-0.016  Sum_probs=92.7

Q ss_pred             CCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhccc
Q 028973           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (201)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~  116 (201)
                      ..+.++.|.+|+...||+|++|. ..|..+.++  +.+.+.|..+|.......              =...+...|+...
T Consensus        22 ~~~~~~~vv~f~d~~Cp~C~~~~-~~l~~l~~~--~~~~v~~~~~~~~~~~~s--------------~~aa~a~~aa~~~   84 (195)
T 3hd5_A           22 DTPGKIEVLEFFAYTCPHCAAIE-PMVEDWAKT--APQDVVLKQVPIAFNAGM--------------KPLQQLYYTLQAL   84 (195)
T ss_dssp             SSTTCEEEEEEECTTCHHHHHHH-HHHHHHHHT--CCTTEEEEEEECCSSGGG--------------HHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEEECCCCccHHHhh-HHHHHHHHH--CCCCeEEEEEecccCcch--------------HHHHHHHHHHHhc
Confidence            45689999999999999999994 445444443  666777888877421100              0123333444221


Q ss_pred             ccCcccccceeeccccccc-----cCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEE
Q 028973          117 WPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVV  191 (201)
Q Consensus       117 ~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~I  191 (201)
                          . ++++..=+++...     ....+.+...++..|+|.+.+.+|.++.+....+.+..+...++  ++..+|+++|
T Consensus        85 ----g-~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gtPt~vi  157 (195)
T 3hd5_A           85 ----E-RPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAA--HIDGTPAFAV  157 (195)
T ss_dssp             ----T-CTTHHHHHHHHHHTSCCCCCSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHT--TCCSSSEEEE
T ss_pred             ----C-HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHh--CCCcCceEEE
Confidence                1 3444444433211     11234567889999999999999999999888888888877665  5899999999


Q ss_pred             CCEEe
Q 028973          192 DGQPL  196 (201)
Q Consensus       192 NG~~~  196 (201)
                      ||+++
T Consensus       158 ng~~~  162 (195)
T 3hd5_A          158 GGRYM  162 (195)
T ss_dssp             TTTEE
T ss_pred             CCEEE
Confidence            99976

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.79  E-value=1.7e-08  Score=80.51  Aligned_cols=139  Identities=14%  Similarity=0.042  Sum_probs=94.3

Q ss_pred             CCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhcc
Q 028973           36 SDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAID  115 (201)
Q Consensus        36 ~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~  115 (201)
                      ...+.+|.|.+|+...||+|++|. ..|..+.++  ..+.+.|+.+|.......             . ...+...|+-.
T Consensus        21 ~~~~~~~~i~~f~d~~Cp~C~~~~-~~l~~l~~~--~~~~v~~~~~p~~~~~~~-------------~-~aa~a~~aa~~   83 (192)
T 3h93_A           21 VSQPGKIEVVELFWYGCPHCYAFE-PTIVPWSEK--LPADVHFVRLPALFGGIW-------------N-VHGQMFLTLES   83 (192)
T ss_dssp             CSSTTSEEEEEEECTTCHHHHHHH-HHHHHHHHT--CCTTEEEEEEECCCSTHH-------------H-HHHHHHHHHHH
T ss_pred             cCCCCCCEEEEEECCCChhHHHhh-HHHHHHHHh--CCCCeEEEEEehhhccch-------------H-HHHHHHHHHHH
Confidence            345789999999999999999994 344433343  666778887776311100             0 01222333321


Q ss_pred             cccCcccccceeecccccccc-----CcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEE
Q 028973          116 SWPELNKHFPFIYCIESLVYE-----HKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVV  190 (201)
Q Consensus       116 ~~~~~~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~  190 (201)
                          +.++++|..=++.....     ...+.+...+...|+|.+.+.+|.++.+....+.+..+...++  ++..+|+++
T Consensus        84 ----~g~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~~  157 (192)
T 3h93_A           84 ----MGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAY--QVTGVPTMV  157 (192)
T ss_dssp             ----HTCCHHHHHHHHHHHHTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHH--TCCSSSEEE
T ss_pred             ----cCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHh--CCCCCCeEE
Confidence                23556666665543211     1234567889999999999999999998888888887776655  489999999


Q ss_pred             ECCEEec
Q 028973          191 VDGQPLY  197 (201)
Q Consensus       191 ING~~~~  197 (201)
                      |||+++.
T Consensus       158 vng~~~~  164 (192)
T 3h93_A          158 VNGKYRF  164 (192)
T ss_dssp             ETTTEEE
T ss_pred             ECCEEEe
Confidence            9998763

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.73  E-value=1.5e-08  Score=80.75  Aligned_cols=141  Identities=18%  Similarity=0.121  Sum_probs=96.8

Q ss_pred             CCCCCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhh
Q 028973           32 RTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEA  111 (201)
Q Consensus        32 ~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qa  111 (201)
                      +...+..+.+|.|.+|+...||+|++|. ..|....++  ..+.+.++.+|.....             .. -...+.-.
T Consensus        14 ~p~~g~~~~~~~i~~f~d~~Cp~C~~~~-~~l~~l~~~--~~~~v~~~~~p~~~~~-------------~s-~~aa~a~~   76 (195)
T 2znm_A           14 KPIPQEQSGKIEVLEFFGYFCVHCHHFD-PLLLKLGKA--LPSDAYLRTEHVVWQP-------------EM-LGLARMAA   76 (195)
T ss_dssp             SCCCCSSSSSEEEEEEECTTSCCTTSSC-HHHHHHHHH--SCTTEEEEEEECCCSG-------------GG-HHHHHHHH
T ss_pred             CCCCCCCCCCcEEEEEECCCChhHHHHh-HHHHHHHHH--CCCceEEEEeccccCc-------------cc-HHHHHHHH
Confidence            3445667789999999999999999995 456666665  5566888888863110             00 11333334


Q ss_pred             hhcccccCcccccceeeccccccc-----cCcchhHHHHHhhc-CCCchhhhhcccCchhHHHHHHHHHHhccCCCCCce
Q 028973          112 CAIDSWPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKL-ELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQY  185 (201)
Q Consensus       112 Cal~~~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~-g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~  185 (201)
                      |+-.    ...+++|..-++....     ....+.+...+... |+|.+.+.+|.++.+....+.+..+....+  ++..
T Consensus        77 aa~~----~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~g  150 (195)
T 2znm_A           77 AVNL----SGLKYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQY--RIDS  150 (195)
T ss_dssp             HHHH----HTCHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCS
T ss_pred             HHHH----cCcHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHc--CCCC
Confidence            4421    2345566655544321     01234566888999 999999999999988888888777766654  4899


Q ss_pred             eeEEEECCEE
Q 028973          186 VPWVVVDGQP  195 (201)
Q Consensus       186 vP~I~ING~~  195 (201)
                      +|+++|||+.
T Consensus       151 tPt~ving~~  160 (195)
T 2znm_A          151 TPTVIVGGKY  160 (195)
T ss_dssp             SSEEEETTTE
T ss_pred             CCeEEECCEE
Confidence            9999999986

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.65  E-value=8e-08  Score=77.54  Aligned_cols=138  Identities=17%  Similarity=0.088  Sum_probs=89.7

Q ss_pred             CCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhccc
Q 028973           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (201)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~  116 (201)
                      ....+|.|..|+.-.||+|++|- ..|....++  ..+.+.|+.+|.......              =...+.-.|+...
T Consensus        21 ~~~~~v~vv~f~d~~Cp~C~~~~-~~l~~~~~~--~~~~v~~~~~p~~~~~~~--------------~~aa~a~~aa~~~   83 (193)
T 3hz8_A           21 QQAGKVEVLEFFGYFCPHCAHLE-PVLSKHAKS--FKDDMYLRTEHVVWQKEM--------------LTLARLAAAVDMA   83 (193)
T ss_dssp             SSTTSEEEEEEECTTCHHHHHHH-HHHHHHHTT--CCTTEEEEEEECCCSGGG--------------HHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCChhHHHHH-HHHHHHHHH--CCCCeEEEEecCCCCccc--------------HHHHHHHHHHHHc
Confidence            34579999999999999999994 455444443  666778888887421100              0133344444221


Q ss_pred             ccCcccccc--eeecccccc-----ccCcchhHHHHHhhc-CCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeE
Q 028973          117 WPELNKHFP--FIYCIESLV-----YEHKYSQWETCFDKL-ELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPW  188 (201)
Q Consensus       117 ~~~~~~~~~--fI~C~~~~~-----~~~~~~~~~~Ca~~~-g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~  188 (201)
                          ..+++  +..=+....     .....+.+...+... |+|.+.+.+|.++......+.+..+....+  +++.+|+
T Consensus        84 ----g~~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gtPt  157 (193)
T 3hz8_A           84 ----AADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETF--QIDGVPT  157 (193)
T ss_dssp             ----TGGGHHHHHHHHHHHHHTSCCCTTSHHHHHHHHHHCTTTTHHHHHHHHHSHHHHHHHHHHHHHHHHT--TCCSSSE
T ss_pred             ----CchhHHhHHHHHHHHHHHhCcCCCCHHHHHHHHHHccCCCHHHHHHHHcCHHHHHHHHHHHHHHHHh--CCCcCCE
Confidence                11222  222221111     011234566788899 999999999999988888888877776665  4899999


Q ss_pred             EEECCEEec
Q 028973          189 VVVDGQPLY  197 (201)
Q Consensus       189 I~ING~~~~  197 (201)
                      ++|||+++.
T Consensus       158 ~vvng~~~~  166 (193)
T 3hz8_A          158 VIVGGKYKV  166 (193)
T ss_dssp             EEETTTEEE
T ss_pred             EEECCEEEe
Confidence            999999763

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=98.51  E-value=3.8e-07  Score=73.59  Aligned_cols=138  Identities=9%  Similarity=-0.003  Sum_probs=88.5

Q ss_pred             CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhc---c
Q 028973           39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAI---D  115 (201)
Q Consensus        39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal---~  115 (201)
                      +.+|+|.+|..-.||+|++| ...+.|.+++ ...+.|.|.+.+|.-.. ..+              .-....+++   .
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~-~~~~~~~l~~-~~~g~v~~v~r~~p~~~-h~~--------------s~~aaraa~aa~~   75 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKA-FFKLDDLLAQ-AGEDNVTVRIRLQSQPW-HMF--------------SGVIVRCILAAAT   75 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHH-HTTHHHHHHH-HCTTTEEEEEEECCCTT-STT--------------HHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCCHhHHHH-HHHHHHHHHH-hCCCCEEEEEEEcCCCC-Ccc--------------HHHHHHHHHHHHH
Confidence            68999999999999999999 4678888776 13566766665553211 011              111222222   2


Q ss_pred             cccCcccccceeecccccccc--------------CcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCC
Q 028973          116 SWPELNKHFPFIYCIESLVYE--------------HKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVP  181 (201)
Q Consensus       116 ~~~~~~~~~~fI~C~~~~~~~--------------~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p  181 (201)
                      ..+...++++|..-+++.+..              +..+.+..-++..|+|.+.+   .++++...-+++..+...++  
T Consensus        76 ~~~~~~~f~~~~~aLf~~q~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~---l~~~~~~~~v~~~~~~a~~~--  150 (182)
T 3gn3_A           76 LEGGKESAKAVMTAVASHREEFEFEHHAGGPNLDATPNDIIARIERYSGLALAEA---FANPELEHAVKWHTKYARQN--  150 (182)
T ss_dssp             STTHHHHHHHHHHHHHHTGGGGSCBTTTBSGGGGCCHHHHHHHHHHHHTCCCHHH---HHCGGGHHHHHHHHHHHHHH--
T ss_pred             hccChHHHHHHHHHHHhcCcccccccccccccCCCCHHHHHHHHHHHhCCCHHHH---hcChHHHHHHHHHHHHHHHC--
Confidence            111125778888888764311              11234567888899998877   45666666666655554443  


Q ss_pred             CCceeeEEEECCEEecc
Q 028973          182 PHQYVPWVVVDGQPLYE  198 (201)
Q Consensus       182 ~~~~vP~I~ING~~~~d  198 (201)
                      +++.+|+++|||+.+..
T Consensus       151 GV~gtPtf~ing~~~~~  167 (182)
T 3gn3_A          151 GIHVSPTFMINGLVQPG  167 (182)
T ss_dssp             TCCSSSEEEETTEECTT
T ss_pred             CCCccCEEEECCEEccC
Confidence            48999999999999743

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.46  E-value=2e-07  Score=74.89  Aligned_cols=139  Identities=12%  Similarity=-0.049  Sum_probs=86.1

Q ss_pred             CceEEEEEEEecChhhHHHHHHh--HHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhcccc
Q 028973           40 SKVKLGLYYESLCPYSANFIINY--LVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSW  117 (201)
Q Consensus        40 ~kV~V~vyyESlCPd~~~Fi~~q--L~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~~  117 (201)
                      .+++|..|+.-.||+|++|- ..  +.|.+.+ .+.+.+.|..+|+.-..  .. +       .   ...+.-.|+... 
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--~~-s-------~---~aa~a~~aA~~~-   77 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFS-QTMGVDQAIRH-VLPQGSRMVKYHVSLLG--PL-G-------H---ELTRAWALAMVM-   77 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHH-HTSCHHHHHHT-TCCTTCCEEEEECSSSS--TT-H-------H---HHHHHHHHHHHH-
T ss_pred             CCCEEEEEECCCChhHHHHh-HhccchHHHHH-hCCCCCEEEEEechhcc--cc-c-------H---HHHHHHHHHHHc-
Confidence            46788999999999999994 44  3467754 46666777777764311  00 0       0   012222333221 


Q ss_pred             cCccccc-ceeeccccccccCcchhHHHHHhhc-CCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEE
Q 028973          118 PELNKHF-PFIYCIESLVYEHKYSQWETCFDKL-ELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQP  195 (201)
Q Consensus       118 ~~~~~~~-~fI~C~~~~~~~~~~~~~~~Ca~~~-g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~  195 (201)
                      ....+++ .+..=++........+.+...+... |+|.+.+.+|.++......+.+..+...++  +++.+|+++|||++
T Consensus        78 g~~~~~~~~lf~a~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~GtPt~~vng~~  155 (189)
T 3l9v_A           78 KETDVIEKAFFTAGMVEKRLHSPDDVRRVFMSATGISRGEYDRSIKSPAVNDMVALQERLFKEY--GVRGTPSVYVRGRY  155 (189)
T ss_dssp             TCHHHHHHHHHHHHTTTCCCCSHHHHHHHHHHHHCCCHHHHHHHTTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTE
T ss_pred             CcHHHHHHHHHHHHhhhccCCCHHHHHHHHHHccCCCHHHHHHHHhhHHHHHHHHHHHHHHHHh--CCCccCEEEECCEE
Confidence            1111111 1111111111012234567889999 999999999999988888888877776655  48999999999986


Q ss_pred             e
Q 028973          196 L  196 (201)
Q Consensus       196 ~  196 (201)
                      .
T Consensus       156 ~  156 (189)
T 3l9v_A          156 H  156 (189)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.43  E-value=5.1e-07  Score=70.65  Aligned_cols=135  Identities=15%  Similarity=0.142  Sum_probs=79.8

Q ss_pred             CCCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccC--CcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhh
Q 028973           34 SPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEA  111 (201)
Q Consensus        34 ~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l--~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qa  111 (201)
                      .++..+.+|+|.+|..-.||+|++|. ..+.+.+++  +  .+.+.|.++||.-...  . .        .  .++..+.
T Consensus        21 ~~G~~~a~v~i~~f~D~~Cp~C~~~~-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~--~-~--------~--~a~~~~~   84 (175)
T 1z6m_A           21 HIGESNAPVKMIEFINVRCPYCRKWF-EESEELLAQ--SVKSGKVERIIKLFDKEKE--S-L--------Q--RGNVMHH   84 (175)
T ss_dssp             EESCTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHH--HHHTTSEEEEEEECCCCST--T-T--------H--HHHHHHT
T ss_pred             ccCCCCCCeEEEEEECCCCcchHHHH-HHHHHHHHH--HhhCCcEEEEEEeCCCCcc--c-H--------H--HHHHHHH
Confidence            46777889999999999999999994 567777654  5  5668888877753210  0 0        0  1333444


Q ss_pred             hhcccccCcccccceeecccccccc-C--cchhHHHH-HhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceee
Q 028973          112 CAIDSWPELNKHFPFIYCIESLVYE-H--KYSQWETC-FDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVP  187 (201)
Q Consensus       112 Cal~~~~~~~~~~~fI~C~~~~~~~-~--~~~~~~~C-a~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP  187 (201)
                      |+..  .++.++++|..=++..... +  .......- ++..|+|.+.         ....+.+..+....+  ++..+|
T Consensus        85 ~~~~--~~~~~~~~~~~~lf~~~~~~~~~~~~~l~~~a~~~~Gld~~~---------~~~~~~~~~~~a~~~--gv~gtP  151 (175)
T 1z6m_A           85 YIDY--SAPEQALSALHKMFATQDEWGNLTLEEVATYAEKNLGLKEQK---------DATLVSAVIAEANAA--HIQFVP  151 (175)
T ss_dssp             TCCT--TCHHHHHHHHHHHHHTHHHHTTSCHHHHHHHHHHTSCCCCCC---------CHHHHHHHHHHHHHH--TCCSSC
T ss_pred             HHHh--cChHHHHHHHHHHHHcChhhccCCHHHHHHHHHHhcCCCccc---------CHHHHHHHHHHHHHc--CCCCcC
Confidence            4322  2345566666655543210 0  11222233 3567887641         123334444433333  478999


Q ss_pred             EEEECCEEec
Q 028973          188 WVVVDGQPLY  197 (201)
Q Consensus       188 ~I~ING~~~~  197 (201)
                      +++|||+.+.
T Consensus       152 t~vvng~~~~  161 (175)
T 1z6m_A          152 TIIIGEYIFD  161 (175)
T ss_dssp             EEEETTEEEC
T ss_pred             eEEECCEEcc
Confidence            9999999873

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=98.39  E-value=3.5e-07  Score=73.97  Aligned_cols=137  Identities=12%  Similarity=0.018  Sum_probs=84.0

Q ss_pred             CCceEEEEEEEecChhhHHHHHHhH--HHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhccc
Q 028973           39 NSKVKLGLYYESLCPYSANFIINYL--VKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (201)
Q Consensus        39 ~~kV~V~vyyESlCPd~~~Fi~~qL--~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~  116 (201)
                      ..+++|..|..-.||+|++|- ..|  .|.|.+ .+.+-+.|.++|+.-..  .. +.          ..-+...++...
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~-~~l~~~~~l~~-~~~~~v~~~~~~~~~~~--~~-s~----------~aa~a~~aA~~~   84 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFE-EVLHVSDNVKK-KLPEGTKMTKYHVEFLG--PL-GK----------ELTQAWAVAMAL   84 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHH-HTSCHHHHHHH-HSCTTCCEEEEECSSSS--TT-HH----------HHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCChhHHHhC-hhccchHHHHH-hCCCCcEEEEEeccccc--cc-CH----------HHHHHHHHHHHc
Confidence            458999999999999999994 444  466654 35555677766654210  00 00          001111111110


Q ss_pred             ccCcccccceeeccccc----cccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEEC
Q 028973          117 WPELNKHFPFIYCIESL----VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVD  192 (201)
Q Consensus       117 ~~~~~~~~~fI~C~~~~----~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~IN  192 (201)
                       ...   .++..=+...    ......+.+...+...|+|.+.+.+|.++.+....+.+..+...++  +++.+|+++||
T Consensus        85 -g~~---~~~~~~lf~a~~~~~~~~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gtPtfvvn  158 (191)
T 3l9s_A           85 -GVE---DKVTVPLFEAVQKTQTVQSAADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLQGVPAMFVN  158 (191)
T ss_dssp             -TCH---HHHHHHHHHHHHTSCCCSSHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEET
T ss_pred             -CcH---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHh--CCcccCEEEEC
Confidence             000   1111111110    0012334567889999999999999999988888888877776665  48999999999


Q ss_pred             CEEe
Q 028973          193 GQPL  196 (201)
Q Consensus       193 G~~~  196 (201)
                      |+++
T Consensus       159 G~~~  162 (191)
T 3l9s_A          159 GKYQ  162 (191)
T ss_dssp             TTEE
T ss_pred             CEEE
Confidence            9975

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=98.19  E-value=2e-06  Score=67.91  Aligned_cols=144  Identities=13%  Similarity=0.050  Sum_probs=81.9

Q ss_pred             CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhccc--
Q 028973           39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS--  116 (201)
Q Consensus        39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~--  116 (201)
                      +.++.+..|+.-.||.|..| ...|.+.+.+ +..+.+.+++++++...    +.      |..--.....-.|+-..  
T Consensus        16 ~~~~~~ief~d~~CP~C~~~-~~~l~~~l~~-~~~~~v~~~~~~l~~~~----~~------~~~~~~~~~~~~~~~~~~~   83 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKY-DKAVTGPVSE-KVKDIVAFTPFHLETKG----EY------GKQASEVFAVLINKDKAAG   83 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHH-HHHTHHHHHH-HTTTTCEEEEEECTTSS----TT------HHHHHHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEEEeCcCcchhhC-cHHHHHHHHH-hCCCceEEEEEecCccc----cc------cHHHHHHHHHHHHhhhhcC
Confidence            55666667888999999998 4566455543 25556777777765321    00      00000000111121100  


Q ss_pred             c---cCcccccceeeccccccc-----cCcchhHHHH----HhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCc
Q 028973          117 W---PELNKHFPFIYCIESLVY-----EHKYSQWETC----FDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQ  184 (201)
Q Consensus       117 ~---~~~~~~~~fI~C~~~~~~-----~~~~~~~~~C----a~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~  184 (201)
                      +   +....+++|+.=+.+...     ....+.+...    ++..|+|.+.+.+|.++++....+.+..+....+  ++.
T Consensus        84 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~l~~~~~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~  161 (195)
T 3c7m_A           84 ISLFDANSQFKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAGMSQADFEAALKEPAVQETLEKWKASYDVA--KIQ  161 (195)
T ss_dssp             CCTTSTTCHHHHHHHHHHHHHHTSCCCTTTTTCHHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHGGGHHHHH--HHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhHHHHcCCCHHHHHHHHcChHHHHHHHHHHHHHHHc--CCC
Confidence            0   001112233333322110     1122346678    8899999999999999888777776665554443  478


Q ss_pred             eeeEEEECCEEe
Q 028973          185 YVPWVVVDGQPL  196 (201)
Q Consensus       185 ~vP~I~ING~~~  196 (201)
                      .+||++|||+..
T Consensus       162 gtPt~~ing~~~  173 (195)
T 3c7m_A          162 GVPAYVVNGKYL  173 (195)
T ss_dssp             CSSEEEETTTEE
T ss_pred             ccCEEEECCEEE
Confidence            999999999863

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=98.12  E-value=8.2e-06  Score=65.68  Aligned_cols=148  Identities=14%  Similarity=0.094  Sum_probs=89.7

Q ss_pred             CceEEEEEEEecChhhHHHHHHhHHHHHhhccC-CcceeEEEEeeecceecCCCC---------------------cee-
Q 028973           40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDL-LSIVDLHLSPWGNAKIRANNS---------------------TFD-   96 (201)
Q Consensus        40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l-~~~idl~lvP~G~a~~~~~~~---------------------~f~-   96 (201)
                      ++++|++|+.-.||.|..+  .++.+.+.+  + ...++|+++||+-......+.                     .|. 
T Consensus         6 ~~~~I~~f~D~~CP~C~~~--~~~~~~l~~--~~~~~v~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~a~~~g~~~~~   81 (216)
T 2in3_A            6 EKPVLWYIADPMCSWCWGF--APVIENIRQ--EYSAFLTVKIMPGGLRPGTNTPLLPEKRAQILHHWHSVHITTGQPFTF   81 (216)
T ss_dssp             CCCEEEEEECTTCHHHHHH--HHHHHHHHH--HHTTTCEEEEEECC----CCSBCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             cceeEEEEECCCCchhhcc--hHHHHHHHh--cCCCCeEEEEeecccccCCCCCCCHHHHHHHHHHHHHHHHHHCCccCh
Confidence            3689999999999999944  556666654  2 235889999987432111000                     000 


Q ss_pred             -----ecCChhhhhhhHhhhhhcccccCcccccceeecccccccc-----CcchhHHHHHhhcCCCchhhhhcccCchhH
Q 028973           97 -----CQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYE-----HKYSQWETCFDKLELDPKPIVDCYTSGYGT  166 (201)
Q Consensus        97 -----CQHG~~EC~gN~~qaCal~~~~~~~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~  166 (201)
                           -.+-+.-=...+.-.++-..  .+.+.++|..=+++....     ...+.+...++..|+|.+.+.+|.++++..
T Consensus        82 ~~~~~~~~~~~s~~a~r~~~~a~~~--~~~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~  159 (216)
T 2in3_A           82 ENALPEGFIYDTEPACRGVVSVSLI--EPEKVFPFFAAIQRAFYVGQEDVAQLAILKKLAVDLGIPESRFTPVFQSDEAK  159 (216)
T ss_dssp             TTCSCTTCBCCCHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHTTCCHHHHHHHHHSHHHH
T ss_pred             HHHccCCcccCcHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcchHHH
Confidence                 00000000122222233221  124556666666542211     123456788999999999999999998888


Q ss_pred             HHHHHHHHHhccCCCCCceeeEEEE--CCEE
Q 028973          167 QLELKYAAETNSLVPPHQYVPWVVV--DGQP  195 (201)
Q Consensus       167 ~Ll~~~~~~T~~l~p~~~~vP~I~I--NG~~  195 (201)
                      ..+.+..+....+  ++..+|+++|  ||++
T Consensus       160 ~~v~~~~~~a~~~--gv~g~Pt~~i~~~G~~  188 (216)
T 2in3_A          160 QRTLAGFQRVAQW--GISGFPALVVESGTDR  188 (216)
T ss_dssp             HHHHHHHHHHHHT--TCCSSSEEEEEETTEE
T ss_pred             HHHHHHHHHHHHc--CCcccceEEEEECCEE
Confidence            8888777776554  5899999998  9986

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=98.05  E-value=1.7e-05  Score=63.85  Aligned_cols=145  Identities=12%  Similarity=0.027  Sum_probs=89.1

Q ss_pred             eEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEee--ecc-eecCC-CCceeecCChhhh-------------
Q 028973           42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW--GNA-KIRAN-NSTFDCQHGPSEC-------------  104 (201)
Q Consensus        42 V~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~--G~a-~~~~~-~~~f~CQHG~~EC-------------  104 (201)
                      ++|++|+.-.||.|... ...|..+...  ..  ++|++.||  +.. ...+. .....   |..+=             
T Consensus         1 m~I~~~~D~~CP~cy~~-~~~l~~~~~~--~~--~~v~~~p~~L~~~~~~~g~~~~~~~---g~~~~~~~~~~~~~~~a~   72 (203)
T 2imf_A            1 MIVDFYFDFLSPFSYLA-NQRLSKLAQD--YG--LTIRYNAIDLARVKIAIGNVGPSNR---DLKVKLDYLKVDLQRWAQ   72 (203)
T ss_dssp             CEEEEEECTTCHHHHHH-HHHHHHHHHH--HC--CEEEEEECCHHHHHHHHTCCSCCGG---GCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCHHHHHH-HHHHHHHHHH--cC--CeEEEEeeecchhhHhhCCCCcccc---cChHHHHHHHHHHHHHHH
Confidence            47999999999999988 4566666665  32  77788887  221 11000 00000   10000             


Q ss_pred             ----------hhhHhhhhhccc-ccCcccccceeeccccccc-----cCcchhHHHHHhhcCCCchhhhhcccCchhHHH
Q 028973          105 ----------LLNTVEACAIDS-WPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQL  168 (201)
Q Consensus       105 ----------~gN~~qaCal~~-~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~L  168 (201)
                                ..|-..++.+-. ...+.++++|..=+++...     ....+.+...+...|+|.+.+.+|.++++..+.
T Consensus        73 ~~G~~~~~~~~~~t~~a~r~~~~a~~~g~~~~~~~~lf~a~~~~~~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~  152 (203)
T 2imf_A           73 LYGIPLVFPANYNSRRMNIGFYYSGAEAQAAAYVNVVFNAVWGEGIAPDLESLPALVSEKLGWDRSAFEHFLSSNAATER  152 (203)
T ss_dssp             HHTCCCCCCSCCCCHHHHHHGGGCCSHHHHHHHHHHHHHHHHHSCCCTTCTTHHHHHHHHHTCCHHHHHHHHHSHHHHHH
T ss_pred             HcCCCCCCCCCCChHHHHHHHHHHhCcChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHHHHH
Confidence                      223222222111 1123345566555554321     112345678899999999999999999888888


Q ss_pred             HHHHHHHhccCCCCCceeeEEEECCEEe
Q 028973          169 ELKYAAETNSLVPPHQYVPWVVVDGQPL  196 (201)
Q Consensus       169 l~~~~~~T~~l~p~~~~vP~I~ING~~~  196 (201)
                      +.+..++..++  ++..||+++|||+.+
T Consensus       153 v~~~~~~a~~~--Gv~G~Ptfvi~g~~~  178 (203)
T 2imf_A          153 YDEQTHAAIER--KVFGVPTMFLGDEMW  178 (203)
T ss_dssp             HHHHHHHHHHT--TCCSSSEEEETTEEE
T ss_pred             HHHHHHHHHHC--CCCcCCEEEECCEEE
Confidence            88877776554  589999999999866

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=97.91  E-value=6.4e-05  Score=60.63  Aligned_cols=145  Identities=12%  Similarity=0.041  Sum_probs=90.4

Q ss_pred             eEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCC-------------------ceeecCCh-
Q 028973           42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNS-------------------TFDCQHGP-  101 (201)
Q Consensus        42 V~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~-------------------~f~CQHG~-  101 (201)
                      ++|++|+.-.||.|-.+ ...|..+.+.  +.+.++|+++||+-......+.                   ++.-.... 
T Consensus         3 ~~I~~~~D~~CP~cy~~-~~~l~~l~~~--~~~~v~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~r~a~~~G~~f~~~~~   79 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGY-KPTIEKLKQQ--LPGVIQFEYVVGGLAPDTNLPMPPEMQQKLEGIWKQIETQLGTKFNYDFW   79 (208)
T ss_dssp             EEEEEEECTTCHHHHHH-HHHHHHHHHH--SCTTSEEEEEECCSSCSCCCBCCHHHHHHHHHHHHHHHHHHCCCCCTTHH
T ss_pred             eEEEEEECCCCchhhhh-hHHHHHHHHh--CCCCceEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHCCcccHHHH
Confidence            68999999999999977 4566666665  6678999999987322110000                   00000000 


Q ss_pred             -------hhhhhhHhhhhhcccccCcccccceeeccccccc-----cCcchhHHHHHhhcCCCchhhhhcccCchhHHHH
Q 028973          102 -------SECLLNTVEACAIDSWPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLE  169 (201)
Q Consensus       102 -------~EC~gN~~qaCal~~~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll  169 (201)
                             .-=...+.-.++-.    ....+++..-+.+...     ....+.+...+...|+|.+.+.+|.++++..+.+
T Consensus        80 ~~~~~~~~s~~a~r~~~aa~~----~g~~~~~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v  155 (208)
T 3kzq_A           80 KLCTPVRSTYQSCRAVIAAGF----QDSYEQMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDGTLLEGVF  155 (208)
T ss_dssp             HHSCCBCCCHHHHHHHHHHHT----TTCHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHH
T ss_pred             hcCCCcCCcHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHH
Confidence                   00011122222211    2233555555543211     1223456788999999999999999999888888


Q ss_pred             HHHHHHhccCCCCCceeeEEEEC--CEE
Q 028973          170 LKYAAETNSLVPPHQYVPWVVVD--GQP  195 (201)
Q Consensus       170 ~~~~~~T~~l~p~~~~vP~I~IN--G~~  195 (201)
                      .+..+...++  ++..|||++||  |+.
T Consensus       156 ~~~~~~a~~~--gv~g~Pt~~v~~~~~~  181 (208)
T 3kzq_A          156 QDQLSLAKSL--GVNSYPSLVLQINDAY  181 (208)
T ss_dssp             HHHHHHHHHT--TCCSSSEEEEEETTEE
T ss_pred             HHHHHHHHHc--CCCcccEEEEEECCEE
Confidence            8888777665  58999999995  554

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=97.75  E-value=1.5e-05  Score=63.86  Aligned_cols=134  Identities=10%  Similarity=0.007  Sum_probs=80.5

Q ss_pred             CceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhcccccC
Q 028973           40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPE  119 (201)
Q Consensus        40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~~~~~  119 (201)
                      .+++|..|+.-.||+|++|-  ..++-|.+ ++  .+.|+.+|..-.             +..+ ..-+....+-...+ 
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~--~~~~~~~~-~~--~v~~~~~p~~~~-------------~~~~-~aa~a~~Aa~~q~g-   81 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNME--NFLPVISQ-EA--GTDIGKMHITFN-------------QSAH-IASMFYYAAEMQVD-   81 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHG--GGHHHHHH-HH--TSCCEEEECCSS-------------SHHH-HHHHHHHHHHTTSS-
T ss_pred             CCCEEEEEECCCChhHHHhh--HHHHHHHH-Hh--CCeEEEEeccCC-------------ccch-HHHHHHHHHHHHhC-
Confidence            58899999999999999993  45555544 23  256666665311             1100 01222222311111 


Q ss_pred             cccccceeecccccccc-------CcchhHHHHHhhcCC-CchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEE
Q 028973          120 LNKHFPFIYCIESLVYE-------HKYSQWETCFDKLEL-DPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVV  191 (201)
Q Consensus       120 ~~~~~~fI~C~~~~~~~-------~~~~~~~~Ca~~~g~-~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~I  191 (201)
                      ...++++..-+......       ...+.+...+...|+ |.+.+.++.++ .....+.+..+...++  +++.+|+++|
T Consensus        82 ~~~~~~~~~~lf~a~~~~~~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~-~~~~~v~~~~~~a~~~--gv~GtPtfvv  158 (185)
T 3feu_A           82 GAPDHAFMEDLFAATQMGEGTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRD-TLIKKVDNAKMLSEKS--GISSVPTFVV  158 (185)
T ss_dssp             SSCCHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHH-HHHHHHHHHHHHHHHH--TCCSSSEEEE
T ss_pred             CchHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHc--CCCccCEEEE
Confidence            11134444444432211       122346688999998 99999999876 5556666666665554  4899999999


Q ss_pred             CCEEe
Q 028973          192 DGQPL  196 (201)
Q Consensus       192 NG~~~  196 (201)
                      ||+++
T Consensus       159 ng~~~  163 (185)
T 3feu_A          159 NGKYN  163 (185)
T ss_dssp             TTTEE
T ss_pred             CCEEE
Confidence            99974

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=97.62  E-value=7.8e-05  Score=60.19  Aligned_cols=150  Identities=13%  Similarity=0.150  Sum_probs=89.9

Q ss_pred             CCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEee--ecceecCCC---C--------------------
Q 028973           39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW--GNAKIRANN---S--------------------   93 (201)
Q Consensus        39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~--G~a~~~~~~---~--------------------   93 (201)
                      +.+++|++|+.-.||.|--. ...|......  .  -++|++.||  |......++   .                    
T Consensus         2 ~~~~~I~~~~D~~cPwcyi~-~~~l~~~~~~--~--~~~v~~~p~~L~~~~~~~g~~~~~~~~~k~~~~~~~~~r~a~~~   76 (202)
T 3fz5_A            2 NAMNPIEFWFDFSSGYAFFA-AQRIEALAAE--L--GRTVLWRPYMLGAAFSVTGARGLSSTPLKRDYAQRDWARIARQR   76 (202)
T ss_dssp             -CCSCEEEEECTTCHHHHHH-HTTHHHHHHH--H--TCCEEEEECTTC----------CCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceeEEEEeCCCHHHHHH-HHHHHHHHHH--h--CCeEEEEeeeccchhhhcCCCCcccCcHHHHHHHHHHHHHHHHh
Confidence            34678999999999999876 4556666554  2  478889998  432211100   0                    


Q ss_pred             ceeecCChhhhhhhHhhhhhcccc-c--Ccccccceeeccccccc-----cCcchhHHHHHhhcCCCchhhhhcccCchh
Q 028973           94 TFDCQHGPSECLLNTVEACAIDSW-P--ELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYG  165 (201)
Q Consensus        94 ~f~CQHG~~EC~gN~~qaCal~~~-~--~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G  165 (201)
                      ++.-.. +..=-.|-..++-+-.. .  .+.+..+++.=+++...     ....+.+...+...|+|.+.+.++.++++.
T Consensus        77 G~~f~~-~~~~~~~t~~a~r~~~~a~~~g~~~~~~~~~alf~a~~~~g~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~  155 (202)
T 3fz5_A           77 GLTFRP-PADHPHVALAATRAFYWIEAQSPDAATAFAQRVFDLYFSDRLDTASPEAVSRLGPEVGLEPEALLAGIADPAL  155 (202)
T ss_dssp             TCCCCC-CTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCCCTTCHHHHHTTHHHHTCCHHHHHHHTTCHHH
T ss_pred             CCCCCC-CCCCCCChHHHHHHHHHHHhhCchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHH
Confidence            000000 00000132222211110 0  11244555555544321     122345678899999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCceeeEEEECCEEe
Q 028973          166 TQLELKYAAETNSLVPPHQYVPWVVVDGQPL  196 (201)
Q Consensus       166 ~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~  196 (201)
                      .+.+.+..++..++  ++..|||++|||+.+
T Consensus       156 ~~~v~~~~~~a~~~--Gv~GvPtfvv~g~~~  184 (202)
T 3fz5_A          156 KETVRKIGEDAVAR--GIFGSPFFLVDDEPF  184 (202)
T ss_dssp             HHHHHHHHHHHHHT--TCCSSSEEEETTEEE
T ss_pred             HHHHHHHHHHHHHC--CCCcCCEEEECCEEE
Confidence            98888888887665  589999999999876

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=97.47  E-value=0.00044  Score=57.57  Aligned_cols=149  Identities=10%  Similarity=0.044  Sum_probs=91.7

Q ss_pred             ceEEEEEEEecChhhHHHHHHhHHHHHhhccCC--cceeEEEEeeeccee-c-CCC------------------------
Q 028973           41 KVKLGLYYESLCPYSANFIINYLVKIFEDVDLL--SIVDLHLSPWGNAKI-R-ANN------------------------   92 (201)
Q Consensus        41 kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~--~~idl~lvP~G~a~~-~-~~~------------------------   92 (201)
                      |++|++|+.-.||.|--. ...|-.....  +.  .-++|++.||.-... . .++                        
T Consensus         2 ~~~I~~~~D~~cPwcyig-~~~l~~a~~~--~~~~~~v~v~~~P~~L~p~~~~~g~~~~~~~~~~k~g~~~~~~~~~~~~   78 (239)
T 3gl5_A            2 HMRVEIWSDIACPWCYVG-KARFEKALAA--FPHRDGVEVVHRSFELDPGRAKDDVQPVLTMLTAKYGMSQEQAQAGEDN   78 (239)
T ss_dssp             CEEEEEEECSSCHHHHHH-HHHHHHHHHT--CTTGGGEEEEEEECCSCTTCCTTCCEEHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             CeEEEEEEeCcCHhHHHH-HHHHHHHHHh--cCccCceEEEEEEeccccCCCCCCCCCHHHHHHHhhCCCHHHHHHHHHH
Confidence            689999999999999876 4667766654  43  468999999942111 0 000                        


Q ss_pred             -------CceeecCChhhhhhhHhhhhhcccc-cCcccccceeeccccccc-----cCc-chhHHHHHhhcCCCchhhhh
Q 028973           93 -------STFDCQHGPSECLLNTVEACAIDSW-PELNKHFPFIYCIESLVY-----EHK-YSQWETCFDKLELDPKPIVD  158 (201)
Q Consensus        93 -------~~f~CQHG~~EC~gN~~qaCal~~~-~~~~~~~~fI~C~~~~~~-----~~~-~~~~~~Ca~~~g~~~~~i~~  158 (201)
                             .++.=...+ .=..|-..++-+-.. ....+.++++.=+++...     .+. .+.+...+...|+|.+.+.+
T Consensus        79 ~~r~a~~~Gl~f~~~~-~~~~nt~~a~r~~~~A~~~g~~~~~~~alf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~~~  157 (239)
T 3gl5_A           79 LGAQAAAEGLAYRTRD-RDHGSTFDLHRLLHLAKERGRHEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRA  157 (239)
T ss_dssp             HHHHHHHTTCCCCCSS-CEECCCHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHcCCCccCCC-CCCCChHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHHHH
Confidence                   000000000 001222222211110 112344555555543221     123 44577889999999999999


Q ss_pred             cccC-chhHHHHHHHHHHhccCCCCCceeeEEEECCEE
Q 028973          159 CYTS-GYGTQLELKYAAETNSLVPPHQYVPWVVVDGQP  195 (201)
Q Consensus       159 C~~~-~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~  195 (201)
                      +.++ ++..+.+.+..++..++  ++..|||++|||++
T Consensus       158 ~l~s~~~~~~~v~~~~~~a~~~--Gv~GvPtfvv~g~~  193 (239)
T 3gl5_A          158 VLADPAAYADEVRADEREAAQL--GATGVPFFVLDRAY  193 (239)
T ss_dssp             HHHCTTTTHHHHHHHHHHHHHT--TCCSSSEEEETTTE
T ss_pred             HHcCcHhHHHHHHHHHHHHHHC--CCCeeCeEEECCcE
Confidence            9999 88888888887776654  58999999999974

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=97.27  E-value=0.00071  Score=55.23  Aligned_cols=148  Identities=11%  Similarity=0.005  Sum_probs=84.9

Q ss_pred             CceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEee--eccee-cCC-------------------------
Q 028973           40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW--GNAKI-RAN-------------------------   91 (201)
Q Consensus        40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~--G~a~~-~~~-------------------------   91 (201)
                      .+++|++|+.-.||.|..+ ...|..+...  .  -++|++.||  |.... .++                         
T Consensus         4 m~~~I~~~~D~~CP~Cy~~-~~~l~~l~~~--~--~~~v~~~p~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~r~a~~~G   78 (226)
T 1r4w_A            4 APRVLELFYDVLSPYSWLG-FEVLCRYQHL--W--NIKLKLRPALLAGIMKDSGNQPPAMVPHKGQYILKEIPLLKQLFQ   78 (226)
T ss_dssp             CCEEEEEEECTTCHHHHHH-HHHHHHHTTT--S--SEEEEEEECCHHHHHHHTTCCCTTSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEeCCChHHHHH-HHHHHHHHHH--c--CCeEEEEeeecccchhccCCCCcccChHHHHHHHHHHHHHHHHhC
Confidence            3589999999999999887 4555554443  3  478888887  22110 000                         


Q ss_pred             -CCceeecCCh-----hhhhhhHhhhhhcccccCcccccceeeccccccc-----cCcchhHHHHHhhcCCCc---hhhh
Q 028973           92 -NSTFDCQHGP-----SECLLNTVEACAIDSWPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDP---KPIV  157 (201)
Q Consensus        92 -~~~f~CQHG~-----~EC~gN~~qaCal~~~~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~g~~~---~~i~  157 (201)
                       +..+.=.+=+     .-=...+.-.++-..  ...+++++..=+++...     ....+.+...+...|+|.   +.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~s~~a~r~~~aa~~~--g~~~~~~~~~alf~a~~~~~~~i~~~~~L~~~a~~~Gl~~~d~~~~~  156 (226)
T 1r4w_A           79 VPMSVPKDFFGEHVKKGTVNAMRFLTAVSME--QPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLL  156 (226)
T ss_dssp             CCCCCCSSTTTHHHHHCSHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCCCCCccccccCCCCCHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCchhHHHHH
Confidence             0011000000     000111222222111  11233555554443211     112345678899999964   4788


Q ss_pred             hcccCchhHHHHHHHHHHhccCCCCCceeeEEEEC----CEEe
Q 028973          158 DCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVD----GQPL  196 (201)
Q Consensus       158 ~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~IN----G~~~  196 (201)
                      +|.++.+....+.+..++..++  ++..|||++||    |+.+
T Consensus       157 ~~~~s~~~~~~v~~~~~~a~~~--gv~G~Ptfvv~~~g~~~~~  197 (226)
T 1r4w_A          157 NKISTELVKSKLRETTGAACKY--GAFGLPTTVAHVDGKTYML  197 (226)
T ss_dssp             TTTTSHHHHHHHHHHHHHHHHT--TCCSSCEEEEEETTEEEEE
T ss_pred             HHcCCHHHHHHHHHHHHHHHHC--CCCCCCEEEEeCCCCcCce
Confidence            8888988888888877776654  58999999999    7655

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*

Probab=96.14  E-value=0.031  Score=46.05  Aligned_cols=148  Identities=12%  Similarity=0.035  Sum_probs=83.8

Q ss_pred             CceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEee--eccee-cCC--CC--------------------c
Q 028973           40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW--GNAKI-RAN--NS--------------------T   94 (201)
Q Consensus        40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~--G~a~~-~~~--~~--------------------~   94 (201)
                      .+.+|++|+.-.||.|--. ...|......  .  -++|++.||  |.... .++  ..                    +
T Consensus         4 ~~~~I~~~~D~~CPwcyi~-~~~L~~~~~~--~--~v~v~~~p~~L~~~~~~~g~~~~~~~~~k~~y~~~~~~r~a~~~G   78 (234)
T 3rpp_A            4 LPRTVELFYDVLSPYSWLG-FEILCRYQNI--W--NINLQLRPSLITGIMKDSGNKPPGLLPRKGLYMANDLKLLRHHLQ   78 (234)
T ss_dssp             CCEEEEEEECTTCHHHHHH-HHHHHHHTTT--S--SEEEEEEECCHHHHCC----CCCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEeCCCHHHHHH-HHHHHHHHHH--c--CCeEEEEEeecchhhhhcCCCCcccChHHHHHHHHHHHHHHHHhC
Confidence            5689999999999999866 3455554443  2  488999998  32111 000  00                    0


Q ss_pred             eeecCCh--hh--hhhhHhhhhhcccc---cCcccccceeeccccccc-----cCcchhHHHHHhhcCCCc---hhhhhc
Q 028973           95 FDCQHGP--SE--CLLNTVEACAIDSW---PELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDP---KPIVDC  159 (201)
Q Consensus        95 f~CQHG~--~E--C~gN~~qaCal~~~---~~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~g~~~---~~i~~C  159 (201)
                      +.-...+  ..  -..|-..++-+-..   ..+.+..+++.=+++...     .+..+.+...+...|+|.   +.+.+-
T Consensus        79 ~~f~~~~~~~~~~~~~nt~~a~r~~~aa~~~~~~~~~~~~~al~~A~~~~g~di~d~~~L~~~a~~~GLd~~~~~~~l~~  158 (234)
T 3rpp_A           79 IPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEK  158 (234)
T ss_dssp             CCCCCCSSCHHHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred             CCCCCCCCCcccccCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            0001100  00  00132222221110   012334445444443211     123345778999999999   455555


Q ss_pred             ccCchhHHHHHHHHHHhccCCCCCceeeEEEEC--CE
Q 028973          160 YTSGYGTQLELKYAAETNSLVPPHQYVPWVVVD--GQ  194 (201)
Q Consensus       160 ~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~IN--G~  194 (201)
                      .++++..+.+.+..++..++  ++..|||++||  |+
T Consensus       159 ~~s~~~~~~l~~~~~~a~~~--Gv~GvPtfvv~~~g~  193 (234)
T 3rpp_A          159 IATPKVKNQLKETTEAACRY--GAFGLPITVAHVDGQ  193 (234)
T ss_dssp             TTSHHHHHHHHHHHHHHHHT--TCSSSCEEEEEETTE
T ss_pred             ccCHHHHHHHHHHHHHHHHc--CCCCCCEEEEeCCCC
Confidence            68888888888888887665  58999999995  75

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=96.06  E-value=0.0059  Score=49.30  Aligned_cols=57  Identities=14%  Similarity=0.086  Sum_probs=47.7

Q ss_pred             chhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEec
Q 028973          139 YSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY  197 (201)
Q Consensus       139 ~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~  197 (201)
                      .+.+...+...|+|.+.+.+|.++......+.+..+....+  +++.||+++|||++..
T Consensus         6 ~~~L~~~a~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~--gi~gvP~fvingk~~~   62 (197)
T 1un2_A            6 ASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV--QLRGVPAMFVNGKYQL   62 (197)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTEEE
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCcCCEEEEcceEec
Confidence            34567889999999999999999998888888887776654  4789999999999764

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=95.11  E-value=0.034  Score=42.90  Aligned_cols=40  Identities=20%  Similarity=0.327  Sum_probs=28.1

Q ss_pred             CCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeee
Q 028973           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (201)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G   84 (201)
                      ..+.+++|.+|..-.||+|++|- ..    +++  +. .+.|.++.|.
T Consensus        11 ~~~a~~~vv~f~D~~Cp~C~~~~-~~----l~~--l~-~v~v~~~~~P   50 (147)
T 3gv1_A           11 RGNGKLKVAVFSDPDCPFCKRLE-HE----FEK--MT-DVTVYSFMMP   50 (147)
T ss_dssp             ETTCCEEEEEEECTTCHHHHHHH-HH----HTT--CC-SEEEEEEECC
T ss_pred             cCCCCEEEEEEECCCChhHHHHH-HH----Hhh--cC-ceEEEEEEcc
Confidence            45678999999999999999984 33    333  53 3565555444

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=94.61  E-value=0.056  Score=44.52  Aligned_cols=45  Identities=18%  Similarity=0.333  Sum_probs=36.5

Q ss_pred             CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeee
Q 028973           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (201)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G   84 (201)
                      .+..+.|+.|.+|..-.||+|++|. .+|.+..+.    +.+.|+++||+
T Consensus        92 ~G~~~ak~~v~~F~D~~Cp~C~~~~-~~l~~~~~~----g~v~v~~~~~p  136 (241)
T 1v58_A           92 DGKKDAPVIVYVFADPFCPYCKQFW-QQARPWVDS----GKVQLRTLLVG  136 (241)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHT----TSEEEEEEECC
T ss_pred             ECCCCCCeEEEEEECCCChhHHHHH-HHHHHHHhC----CcEEEEEEECC
Confidence            4666789999999999999999994 567776664    45788888885

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=91.13  E-value=0.22  Score=42.62  Aligned_cols=41  Identities=15%  Similarity=0.230  Sum_probs=34.4

Q ss_pred             CCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeec
Q 028973           38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN   85 (201)
Q Consensus        38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~   85 (201)
                      .+.+..|.+|..-.||+|+++ ..+|.|.+++      +++++++|+-
T Consensus       145 ~~gk~~I~vFtDp~CPYCkkl-~~~l~~~l~~------~~Vr~i~~Pi  185 (273)
T 3tdg_A          145 ANKDKILYIVSDPMCPHCQKE-LTKLRDHLKE------NTVRMVVVGW  185 (273)
T ss_dssp             GGTTCEEEEEECTTCHHHHHH-HHTHHHHHHH------CEEEEEECCC
T ss_pred             CCCCeEEEEEECcCChhHHHH-HHHHHHHhhC------CcEEEEEeec
Confidence            457889999999999999999 5778887764      7888888774

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=89.24  E-value=0.55  Score=37.60  Aligned_cols=44  Identities=16%  Similarity=0.293  Sum_probs=32.1

Q ss_pred             CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeee
Q 028973           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (201)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G   84 (201)
                      .+..+.++.|.+|+...||+|++|. ..|.+ +.+  -  -+.|+++.|.
T Consensus        81 ~g~~~~k~~vv~F~d~~Cp~C~~~~-~~l~~-~~~--~--~v~v~~~~~p  124 (211)
T 1t3b_A           81 YPAKNEKHVVTVFMDITCHYCHLLH-QQLKE-YND--L--GITVRYLAFP  124 (211)
T ss_dssp             ECCTTCSEEEEEEECTTCHHHHHHH-TTHHH-HHH--T--TEEEEEEECC
T ss_pred             ecCCCCCEEEEEEECCCCHhHHHHH-HHHHH-HHh--C--CcEEEEEECC
Confidence            3555789999999999999999994 55666 433  1  2677766554

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=84.92  E-value=1.3  Score=35.26  Aligned_cols=44  Identities=7%  Similarity=0.132  Sum_probs=31.6

Q ss_pred             CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeee
Q 028973           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (201)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G   84 (201)
                      .+..+.++.|.+|+-.-||+|+++. ..|....+     .-+.+.++.|.
T Consensus        81 ~g~~~~k~~vv~F~d~~Cp~C~~~~-~~l~~l~~-----~~v~v~~~~~p  124 (216)
T 1eej_A           81 YKAPQEKHVITVFTDITCGYCHKLH-EQMADYNA-----LGITVRYLAFP  124 (216)
T ss_dssp             ECCTTCCEEEEEEECTTCHHHHHHH-TTHHHHHH-----TTEEEEEEECC
T ss_pred             ecCCCCCEEEEEEECCCCHHHHHHH-HHHHHHHh-----CCcEEEEEECC
Confidence            4566789999999999999999994 45554433     13666666553

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=84.73  E-value=0.99  Score=29.39  Aligned_cols=38  Identities=18%  Similarity=0.408  Sum_probs=26.0

Q ss_pred             ceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEE
Q 028973           41 KVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLS   81 (201)
Q Consensus        41 kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lv   81 (201)
                      ++.|.+|+-+-||.|+++. ..|..+.++  +.+.+.+..+
T Consensus         3 ~~~vv~f~~~~C~~C~~~~-~~l~~~~~~--~~~~~~~~~v   40 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAK-RVVEEVANE--MPDAVEVEYI   40 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHH-HHHHHHHHH--CSSSEEEEEE
T ss_pred             ceEEEEEeCCCCCchHHHH-HHHHHHHHH--cCCceEEEEE
Confidence            5789999999999999984 445544444  5444444443

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=82.29  E-value=3.5  Score=28.80  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=21.1

Q ss_pred             CCCCCCCCCCceEEEEEEEecChhhHHH
Q 028973           31 SRTSPSDVNSKVKLGLYYESLCPYSANF   58 (201)
Q Consensus        31 ~~~~~~~~~~kV~V~vyyESlCPd~~~F   58 (201)
                      .+........+..|.+|+-.-||.|++.
T Consensus         6 ~~~l~~~~~~~~~v~~f~~~~C~~C~~~   33 (100)
T 1wjk_A            6 SGNLSASNRALPVLTLFTKAPCPLCDEA   33 (100)
T ss_dssp             CCCCCCSCCCCCEEEEEECSSCHHHHHH
T ss_pred             chhhhhccCCCCEEEEEeCCCCcchHHH
Confidence            3444445566778999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.93
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	98.65
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.51
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.68
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.3
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	96.67
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	92.32
d1r4wa_	221	Mitochondrial class kappa glutathione S-transferas	91.49
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	84.17
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	83.56

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.93  E-value=7.8e-10  Score=84.74  Aligned_cols=143  Identities=13%  Similarity=0.100  Sum_probs=90.8

Q ss_pred             CCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEee--ecceecCCCCceeecCChhhhhhhHhhhhh
Q 028973           36 SDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW--GNAKIRANNSTFDCQHGPSECLLNTVEACA  113 (201)
Q Consensus        36 ~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~--G~a~~~~~~~~f~CQHG~~EC~gN~~qaCa  113 (201)
                      +..+.+++|.+|..-.||+|++| ...+.+.+++  ..+.+.+.++|+  ........              ..+..+|+
T Consensus        14 ~p~~~~~~Ivef~d~~Cp~C~~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~   76 (181)
T d1beda_          14 TPASSSPVVSEFFSFYCPHCNTF-EPIIAQLKQQ--LPEGAKFQKNHVSFMGGNMGQA--------------MSKAYATM   76 (181)
T ss_dssp             SCCCSSCEEEEEECTTCHHHHHH-HHHHHHHHHT--SCTTCEEEEEECSSSSGGGHHH--------------HHHHHHHH
T ss_pred             CCCCCCCEEEEEECCCCccchhh-hhhhhhHhhh--cccccceeEEeccccccccHHH--------------HHHHHHHH
Confidence            34467889999999999999999 5677777776  666666665554  32221111              22233333


Q ss_pred             cccccCcccccceeeccccccc-cCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEEC
Q 028973          114 IDSWPELNKHFPFIYCIESLVY-EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVD  192 (201)
Q Consensus       114 l~~~~~~~~~~~fI~C~~~~~~-~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~IN  192 (201)
                      ...-.....+..+..=+..... ......+..-+...|+|.+.+.+|.++++..+.+.+..+......  ++.+|+|+||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~g--i~gTPt~~In  154 (181)
T d1beda_          77 IALEVEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSG--LTGVPAVVVN  154 (181)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHT--CCSSSEEEET
T ss_pred             HHhcchhhHHHHHHHHHHHhccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhC--CccccEEEEC
Confidence            2211111111111111111111 122344667788999999999999999999999988888877654  7999999999


Q ss_pred             CEEec
Q 028973          193 GQPLY  197 (201)
Q Consensus       193 G~~~~  197 (201)
                      |+++.
T Consensus       155 Gk~~v  159 (181)
T d1beda_         155 NRYLV  159 (181)
T ss_dssp             TTEEE
T ss_pred             CEEee
Confidence            99763

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=7.4e-09  Score=80.02  Aligned_cols=145  Identities=14%  Similarity=0.029  Sum_probs=86.5

Q ss_pred             CCCCceEEEEEEEecChhhHHHHHHhHHHHHhh-ccCCcceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhhhcc
Q 028973           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFED-VDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAID  115 (201)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~-~~l~~~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaCal~  115 (201)
                      +...+++|..|..-.||+|++| ...|.+..+. +...+.+.+..+|+........   .         ..-..-+|+..
T Consensus        15 p~~~~~~VvEffdy~Cp~C~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~~a~~~~~~~~   81 (188)
T d1fvka_          15 PVAGAPQVLEFFSFFCPHCYQF-EEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLG---K---------DLTQAWAVAMA   81 (188)
T ss_dssp             CCTTCCSEEEEECTTCHHHHHH-HHTTCHHHHHHTTSCTTCCEEEEECSSSSHHHH---H---------HHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCChhhHHH-HHHHHHHHHHhhccCCceEEEEEecCcCCChhH---H---------HHHHHHHHHHH
Confidence            3455678888999999999999 4566554332 2456678888887653221100   0         01111122211


Q ss_pred             cccCcccccceeeccccccccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEE
Q 028973          116 SWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQP  195 (201)
Q Consensus       116 ~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~  195 (201)
                      ..........+..=+...........+..=+...|+|.+.+++|.++++=.+++.++.+....+  +++.+||++|||++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~v~~~~~~a~~~--gI~gTPt~vInGky  159 (188)
T d1fvka_          82 LGVEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV--QLRGVPAMFVNGKY  159 (188)
T ss_dssp             HTCHHHHHHHHHHHHHTSCCCCSHHHHHHHHHHTTCCHHHHHHHHHCHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTE
T ss_pred             HhhhhhHHHHHHHHhhhhcccchHHHHHHHHHHccCCHHHHHhhhccHHHHHHHHHHHHHHHHc--CCccccEEEECCEE
Confidence            1111111111111111111111233455667888999999999999998888888888887665  58999999999986


Q ss_pred             e
Q 028973          196 L  196 (201)
Q Consensus       196 ~  196 (201)
                      +
T Consensus       160 ~  160 (188)
T d1fvka_         160 Q  160 (188)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.51  E-value=6.5e-08  Score=73.50  Aligned_cols=139  Identities=15%  Similarity=0.107  Sum_probs=78.7

Q ss_pred             CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCc--ceeEEEEeeecceecCCCCceeecCChhhhhhhHhhhh
Q 028973           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLS--IVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEAC  112 (201)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~--~idl~lvP~G~a~~~~~~~~f~CQHG~~EC~gN~~qaC  112 (201)
                      .|..+.||+|.+|..-.||+|++| ...+.++..+  ..+  .+.+..+|+..-....              ..-...+|
T Consensus        19 ~G~~~a~v~I~ef~d~~Cp~C~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------------~~a~~~~~   81 (172)
T d1z6ma1          19 IGESNAPVKMIEFINVRCPYCRKW-FEESEELLAQ--SVKSGKVERIIKLFDKEKESL--------------QRGNVMHH   81 (172)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHH-HHHHHHHHHH--HHHTTSEEEEEEECCCCSTTT--------------HHHHHHHT
T ss_pred             ecCCCCCEEEEEEECCCCHhHHHH-HHHHhhhhhh--hccccceeeeeccccccchhh--------------HHHHHHHH
Confidence            678889999999999999999999 4567776654  333  3444444554322111              12233344


Q ss_pred             hcccccCcccccceeeccccccccCcchhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEEC
Q 028973          113 AIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVD  192 (201)
Q Consensus       113 al~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~IN  192 (201)
                      +.... ...+++.++.=...............=++.     .....|.++..-..++.+..+.....  +++.+||++||
T Consensus        82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~a~~~--gI~gTPt~~In  153 (172)
T d1z6ma1          82 YIDYS-APEQALSALHKMFATQDEWGNLTLEEVATY-----AEKNLGLKEQKDATLVSAVIAEANAA--HIQFVPTIIIG  153 (172)
T ss_dssp             TCCTT-CHHHHHHHHHHHHHTHHHHTTSCHHHHHHH-----HHHTSCCCCCCCHHHHHHHHHHHHHH--TCCSSCEEEET
T ss_pred             HHHHc-cchhHHHHHHHHHHhccccchHHHHHHHHH-----HHhhhhhhhHHHHHHHHHHHHHHHHc--CCCcCCEEEEC
Confidence            43332 233444444333221110000011111111     23445777777777777766666554  48999999999


Q ss_pred             CEEecc
Q 028973          193 GQPLYE  198 (201)
Q Consensus       193 G~~~~d  198 (201)
                      |+.+..
T Consensus       154 g~~~~g  159 (172)
T d1z6ma1         154 EYIFDE  159 (172)
T ss_dssp             TEEECT
T ss_pred             CEEecC
Confidence            998853

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=6.5e-05  Score=57.49  Aligned_cols=46  Identities=17%  Similarity=0.310  Sum_probs=39.2

Q ss_pred             CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeec
Q 028973           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN   85 (201)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~   85 (201)
                      .+..+.+++|.+|..-.||+|++|. .+|.+.++.    ..+.++++||+-
T Consensus        31 ~G~~~a~~tv~vF~D~~CP~C~~~~-~~l~~l~~~----~~v~v~~~~~~~   76 (169)
T d1v58a1          31 DGKKDAPVIVYVFADPFCPYCKQFW-QQARPWVDS----GKVQLRTLLVGV   76 (169)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHT----TSEEEEEEECCC
T ss_pred             eCCCCCCEEEEEEECCCCcchHHHH-HHHHHHHhc----cceeEEEEeccc
Confidence            4778899999999999999999995 678888765    458899999874

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.30  E-value=0.00015  Score=54.42  Aligned_cols=46  Identities=13%  Similarity=0.171  Sum_probs=36.7

Q ss_pred             CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeeecc
Q 028973           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNA   86 (201)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G~a   86 (201)
                      .+..+.|++|.+|..-.||+|++| ..++.+..+     ...++++++|...
T Consensus        21 ~g~~~ak~~I~~FsD~~CPyC~~~-~~~l~~l~~-----~~~~v~~~~~~~~   66 (150)
T d1t3ba1          21 YPAKNEKHVVTVFMDITCHYCHLL-HQQLKEYND-----LGITVRYLAFPRA   66 (150)
T ss_dssp             ECCTTCSEEEEEEECTTCHHHHHH-HTTHHHHHH-----TTEEEEEEECCSS
T ss_pred             ECCCCCCEEEEEEECCCCHHHHHH-hHHHHHHhc-----cCceEEEEEeccc
Confidence            478889999999999999999999 567777765     3467788777533

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00077  Score=52.84  Aligned_cols=56  Identities=14%  Similarity=0.093  Sum_probs=48.8

Q ss_pred             hhHHHHHhhcCCCchhhhhcccCchhHHHHHHHHHHhccCCCCCceeeEEEECCEEec
Q 028973          140 SQWETCFDKLELDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPLY  197 (201)
Q Consensus       140 ~~~~~Ca~~~g~~~~~i~~C~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING~~~~  197 (201)
                      +.+.+=+...|+|.+.+.+|.++..-...+.+..+...++.  ++.||+++|||++.-
T Consensus         7 ~~i~~~~~~~Gld~~~f~~~~~s~~~~~~v~~~~~~a~~~g--i~GtPtfiVnGky~v   62 (195)
T d1un2a_           7 SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQ--LRGVPAMFVNGKYQL   62 (195)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTT--CCSSSEEEETTTEEE
T ss_pred             HHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhC--CCcCCEEEECCeeee
Confidence            34567788999999999999999999999999988888765  899999999999863

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.097  Score=38.35  Aligned_cols=44  Identities=7%  Similarity=0.132  Sum_probs=32.7

Q ss_pred             CCCCCCceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeEEEEeee
Q 028973           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (201)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl~lvP~G   84 (201)
                      .+..+.|+.|.+|..-.||+|++| ...|.+..+     +.+.+.++.|-
T Consensus        21 ~g~~~ak~tIv~FsD~~CpyC~~~-~~~l~~~~~-----~~~~~~~~~~p   64 (156)
T d1eeja1          21 YKAPQEKHVITVFTDITCGYCHKL-HEQMADYNA-----LGITVRYLAFP   64 (156)
T ss_dssp             ECCTTCCEEEEEEECTTCHHHHHH-HTTHHHHHH-----TTEEEEEEECC
T ss_pred             ecCCCCCEEEEEEeCCCCHHHHHH-HHHHHHhhc-----cCceEEEEecc
Confidence            577889999999999999999998 455655543     34566665553

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.49  E-value=0.45  Score=35.23  Aligned_cols=53  Identities=6%  Similarity=-0.112  Sum_probs=38.4

Q ss_pred             chhHHHHHhhcCCCchhhhhc---ccCchhHHHHHHHHHHhccCCCCCceeeEEEECC
Q 028973          139 YSQWETCFDKLELDPKPIVDC---YTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG  193 (201)
Q Consensus       139 ~~~~~~Ca~~~g~~~~~i~~C---~~~~~G~~Ll~~~~~~T~~l~p~~~~vP~I~ING  193 (201)
                      .+.+..++...|++.+.+.+=   .++++.++.+.++-++...  -++..|||++|||
T Consensus       134 ~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~k~~l~~~~~~A~~--~GvfGvPtfvi~~  189 (221)
T d1r4wa_         134 SQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACK--YGAFGLPTTVAHV  189 (221)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHH--TTCCSSCEEEEEE
T ss_pred             hHHHHHHHHHhCccccccccccccccCHHHHHHHHHHHHHHHH--CCCeECCEEEEcc
Confidence            356778999999987754442   4566677777777666444  4689999999984

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.17  E-value=0.49  Score=30.34  Aligned_cols=36  Identities=22%  Similarity=0.464  Sum_probs=24.8

Q ss_pred             CceEEEEEEEecChhhHHHHHHhHHHHHhhccCCcceeE
Q 028973           40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDL   78 (201)
Q Consensus        40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~~~idl   78 (201)
                      .||+|.+||-+-||.|+++. ..+....+.  ..+.+.+
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~-p~~~~~~~~--~~~~~~~   37 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAK-RVVEEVANE--MPDAVEV   37 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHH-HHHHHHHHH--CSSSEEE
T ss_pred             CceEEEEEECCCCcChHhhh-hhccccccc--ccccccc
Confidence            58999999999999999873 344444443  4444443

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.56  E-value=0.75  Score=30.63  Aligned_cols=20  Identities=15%  Similarity=0.461  Sum_probs=17.8

Q ss_pred             CCceEEEEEEEecChhhHHH
Q 028973           39 NSKVKLGLYYESLCPYSANF   58 (201)
Q Consensus        39 ~~kV~V~vyyESlCPd~~~F   58 (201)
                      ..++.+.+|+..-||+|+.+
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~   33 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDV   33 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHH
T ss_pred             CCCeEEEEEECCCCcchHHH
Confidence            46789999999999999877