Citrus Sinensis ID: 029010

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MAITCSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLVYTN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccccccccccccccccEEEEEEccccEEEEEEEcccccEEEEEEEEccccEEEEEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEcccccHEEEcccccccccccccccccccEccEEEEcccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHccccEEEEEEcHHHHHcccccccccccccEEEEEEccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
maitcsssslicfssdfassslnlfyskpniiirthllfcprnqkplnssvsdkrrnrvsffsgfSTKRVESFKEELFQAIkpldrgaeaspedQARVDQIARKLEAVNDIkeplksnllngkWELLYTTSQSLlqtkrpkflrpngkiyqaiNIDTLRaqnietwpffnqatanlvplnskrvavkFDYFRIAGLVYTN
Flexible Loop (DISEMBL)
maitcsssslicFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQkplnssvsdkrrnrvsffsgfstkrveSFKEELFQAIKpldrgaeaspedqARVDQIARKLEavndikeplksnllngkwELLYTTSQSllqtkrpkflrpngKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLVYTN
Low Complexity Region (SEG)
MAITCsssslicfssdfassslnlfYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEllyttsqsllqtKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLVYTN
Disordered region (IsUnstruct)
********SLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPR*******************F********************************************AVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLVY**
Disordered Region (DISOPRED)
************************************************************************FKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLVYTN
Disordered Region (DISEMBL)
MAITCSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDR*********ARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLVYTN
Disordered Region (DISPRO)
****CSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRN************RNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLVYTN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAITCSSSSLICFSSDFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLVYTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9LU85	242	Probable plastid-lipid-as	yes	no	0.725	0.599	0.554	5e-43
Q6DBN2	234	Probable plastid-lipid-as	no	no	0.72	0.615	0.552	1e-40
Q6K439	319	Probable plastid-lipid-as	no	no	0.6	0.376	0.311	0.0003
O81439	318	Probable plastid-lipid-as	no	no	0.645	0.405	0.299	0.0005

>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1

 Score =  174 bits (440), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/155 (55%), Positives = 114/155 (73%), Gaps = 10/155 (6%)

Query: 52  SDKRRNRV----SFFSGFSTK-----RVESFKEELFQAIKPLDRGAEASPEDQARVDQIA 102
            D+ R RV    SF   F T+     + +  K+EL +AI+PL+RGA ASP+DQ R+DQ+A
Sbjct: 44  GDRERLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLA 103

Query: 103 RKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQN 162
           RK+EAVN  KEPLKS+L+NGKWEL+YTTS S+LQ K+P+FLR     YQ+IN+DTL+ QN
Sbjct: 104 RKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITN-YQSINVDTLKVQN 162

Query: 163 IETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLV 197
           +ETWPF+N  T ++ PLNSK+VAVK   F+I G +
Sbjct: 163 METWPFYNSVTGDIKPLNSKKVAVKLQVFKILGFI 197

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN2|PAP5_ARATH Probable plastid-lipid-associated protein 5, chloroplastic OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1

 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 111/152 (73%), Gaps = 8/152 (5%)

Query: 52  SDKRRNRV-SFFS-----GFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKL 105
            D+ R R+ + FS     G + KR +  K EL +AI+PL+RGA ASP+DQ  +DQ+ARK+
Sbjct: 39  GDRERLRIQAVFSFPPRNGGAEKR-KQLKHELVEAIEPLERGATASPDDQLLIDQLARKV 97

Query: 106 EAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIET 165
           EAVN  KEPLKS+L+NGKWEL+YTTS ++LQ K+P+FLR +   YQ IN+DTL+ Q +ET
Sbjct: 98  EAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLR-SLTNYQCINMDTLKVQRMET 156

Query: 166 WPFFNQATANLVPLNSKRVAVKFDYFRIAGLV 197
           WPF+N  T +L PLNSK VAVK   F+I G +
Sbjct: 157 WPFYNSVTGDLTPLNSKTVAVKLQVFKILGFI 188

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 15/135 (11%)

Query: 67  TKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWE 125
           T  V   K +L +A+   +RG  AS E +A V ++  +LEA N    P ++  LLNGKW 
Sbjct: 89  TSEVAELKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWI 148

Query: 126 LLYTTSQSLL----QTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNS 181
           L YT+   L         P+ ++   +I Q I+ +    QN     F        V  N+
Sbjct: 149 LAYTSFSQLFPLLGSGSLPQLVKVE-EISQTIDSENFTVQNC--IKFSGPLATTSVSTNA 205

Query: 182 -------KRVAVKFD 189
                  KRV +KFD
Sbjct: 206 KFEVRSPKRVQIKFD 220

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 8/137 (5%)

Query: 66  STKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSN-LLNGKW 124
           S +  E  K  L  ++   DRG   S + +A + ++  +LE+ N    P ++  LLNGKW
Sbjct: 87  SVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPTPAPNEALFLLNGKW 146

Query: 125 ELLYTTSQSL--LQTKRPKFLRPNGKIYQAINIDTLRAQNIETW--PFFNQA---TANLV 177
            L YT+   L  L ++R + L    +I Q I+ D+   QN   +  PF   +    A   
Sbjct: 147 ILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRFAGPFSTTSFSTNAKFE 206

Query: 178 PLNSKRVAVKFDYFRIA 194
             + KRV +KF+   I 
Sbjct: 207 IRSPKRVQIKFEQGVIG 223

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
356525936	240	PREDICTED: probable plastid-lipid-associ	0.835	0.695	0.694	6e-63
356557505	245	PREDICTED: probable plastid-lipid-associ	0.73	0.595	0.797	2e-62
225448063	256	PREDICTED: probable plastid-lipid-associ	0.85	0.664	0.715	7e-62
298204587	320	unnamed protein product [Vitis vinifera]	0.85	0.531	0.715	9e-62
357445617	248	hypothetical protein MTR_2g007640 [Medic	0.96	0.774	0.613	2e-60
217073420	248	unknown [Medicago truncatula] gi|3885181	0.96	0.774	0.608	7e-60
224070527	225	predicted protein [Populus trichocarpa]	0.71	0.631	0.777	8e-59
89355891	174	plastid fibrillin 3 [Coffea canephora]	0.64	0.735	0.789	5e-56
255575408	262	structural molecule, putative [Ricinus c	0.98	0.748	0.555	6e-52
226529185	306	structural molecule [Zea mays] gi|224032	0.685	0.447	0.695	8e-52

>gi|356525936|ref|XP_003531577.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like isoform 1 [Glycine max]

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 123/177 (69%), Positives = 143/177 (80%), Gaps = 10/177 (5%)

Query: 23  NLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFST--KRVESFKEELFQA 80
           +LF S P  +  THL+        L  + S K  N VSFF GF T  + V+S K +L++A
Sbjct: 27  SLFSSSPQKLNTTHLI--------LQVADSGKWSNMVSFFPGFITEGRDVQSLKVDLYEA 78

Query: 81  IKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRP 140
           I PLDRGAEA+PEDQ RVDQIARKLEAVN +KEPLKS+LLNGKWEL YTTSQS+LQT+RP
Sbjct: 79  IAPLDRGAEATPEDQQRVDQIARKLEAVNPVKEPLKSDLLNGKWELFYTTSQSILQTQRP 138

Query: 141 KFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLV 197
           K LRPNGKIYQAIN+DTLRAQNIETWPF+NQATANLVPLNS+RVAVKFD+F+IA L+
Sbjct: 139 KLLRPNGKIYQAINVDTLRAQNIETWPFYNQATANLVPLNSRRVAVKFDFFKIANLI 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557505|ref|XP_003547056.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Glycine max]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/148 (79%), Positives = 130/148 (87%), Gaps = 2/148 (1%)

Query: 52  SDKRRNRVSFFSGFSTKR--VESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVN 109
           S K RN VSFF GF TK   V+  K EL++AI PLDRGAEA+PEDQ RVDQIARKLEAVN
Sbjct: 53  SGKWRNMVSFFPGFLTKGSDVQKLKVELYEAIAPLDRGAEATPEDQQRVDQIARKLEAVN 112

Query: 110 DIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFF 169
            +KEPLKS LLNGKWEL YTTSQS+LQT+RPK LRPNGKIYQAIN+DTLRAQNIETWPF+
Sbjct: 113 PVKEPLKSGLLNGKWELFYTTSQSILQTQRPKLLRPNGKIYQAINVDTLRAQNIETWPFY 172

Query: 170 NQATANLVPLNSKRVAVKFDYFRIAGLV 197
           NQATANLVPLNSKRVAVKFD+F+IA L+
Sbjct: 173 NQATANLVPLNSKRVAVKFDFFKIASLI 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448063|ref|XP_002273405.1| PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Vitis vinifera]

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 123/172 (71%), Positives = 137/172 (79%), Gaps = 2/172 (1%)

Query: 28  KPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKR--VESFKEELFQAIKPLD 85
           KP  I+ T   +     K L  S   K R  VSFF  F TK    E+ KEELF AI PLD
Sbjct: 40  KPKPILTTTQTYHYHPHKALEFSGYWKWRTGVSFFPSFLTKSKDSEALKEELFTAIAPLD 99

Query: 86  RGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRP 145
           RGAEA+ +DQ  VDQIARKLEAVN IKEPLKS+LLNGKWELLYTTSQS+LQT+RPKFLRP
Sbjct: 100 RGAEATAQDQELVDQIARKLEAVNKIKEPLKSDLLNGKWELLYTTSQSVLQTQRPKFLRP 159

Query: 146 NGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLV 197
           NGKIYQAIN+DTLRAQN+ETWPFFNQ TANLVPLN++RVAVKFD+FRIAGL+
Sbjct: 160 NGKIYQAINVDTLRAQNMETWPFFNQVTANLVPLNARRVAVKFDFFRIAGLI 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204587|emb|CBI23862.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 123/172 (71%), Positives = 137/172 (79%), Gaps = 2/172 (1%)

Query: 28  KPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRVSFFSGFSTKR--VESFKEELFQAIKPLD 85
           KP  I+ T   +     K L  S   K R  VSFF  F TK    E+ KEELF AI PLD
Sbjct: 104 KPKPILTTTQTYHYHPHKALEFSGYWKWRTGVSFFPSFLTKSKDSEALKEELFTAIAPLD 163

Query: 86  RGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRP 145
           RGAEA+ +DQ  VDQIARKLEAVN IKEPLKS+LLNGKWELLYTTSQS+LQT+RPKFLRP
Sbjct: 164 RGAEATAQDQELVDQIARKLEAVNKIKEPLKSDLLNGKWELLYTTSQSVLQTQRPKFLRP 223

Query: 146 NGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLV 197
           NGKIYQAIN+DTLRAQN+ETWPFFNQ TANLVPLN++RVAVKFD+FRIAGL+
Sbjct: 224 NGKIYQAINVDTLRAQNMETWPFFNQVTANLVPLNARRVAVKFDFFRIAGLI 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445617|ref|XP_003593086.1| hypothetical protein MTR_2g007640 [Medicago truncatula] gi|124360438|gb|ABN08448.1| PAP fibrillin [Medicago truncatula] gi|355482134|gb|AES63337.1| hypothetical protein MTR_2g007640 [Medicago truncatula]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/202 (61%), Positives = 150/202 (74%), Gaps = 10/202 (4%)

Query: 2   AITCSSSSLICFSS--DFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRV 59
           A+  + +S + F    D   S  NL ++ P     T  +  P +     ++ S K RN V
Sbjct: 6   AVLSTPTSTLPFRCRIDSHPSQPNLLFAPPRPKFNTTNIILPSSV----AADSAKWRNMV 61

Query: 60  SFFSGFST----KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPL 115
           S F GF T      VES K EL++ I+PL+RGAEA+PEDQ RVD+IARKLEA+N +KEPL
Sbjct: 62  SIFQGFLTGGRGNDVESLKVELYETIEPLERGAEATPEDQQRVDKIARKLEAMNSVKEPL 121

Query: 116 KSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATAN 175
            S+LLNGKWELLYTTSQS+LQT+RPKFLRPNGKIYQAIN DTLRAQNIETWPF+NQATAN
Sbjct: 122 NSDLLNGKWELLYTTSQSILQTQRPKFLRPNGKIYQAINTDTLRAQNIETWPFYNQATAN 181

Query: 176 LVPLNSKRVAVKFDYFRIAGLV 197
           LVPLNS+RVAVKFD+F+IA L+
Sbjct: 182 LVPLNSRRVAVKFDFFKIASLI 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073420|gb|ACJ85069.1| unknown [Medicago truncatula] gi|388518147|gb|AFK47135.1| unknown [Medicago truncatula]

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 123/202 (60%), Positives = 150/202 (74%), Gaps = 10/202 (4%)

Query: 2   AITCSSSSLICFSS--DFASSSLNLFYSKPNIIIRTHLLFCPRNQKPLNSSVSDKRRNRV 59
           A+  + +S + F    D   S  NL ++ P     T  +  P +     ++ S K RN V
Sbjct: 6   AVLSTPTSTLPFRCRIDSHPSQPNLLFAPPRPKFNTTNIILPSSV----AADSAKWRNMV 61

Query: 60  SFFSGFST----KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPL 115
           S F GF T      VES K EL++ I+PL+RGAEA+PEDQ RVD+IARKLEA+N +KEPL
Sbjct: 62  SIFQGFLTGGRGNDVESLKVELYETIEPLERGAEATPEDQQRVDKIARKLEAMNSVKEPL 121

Query: 116 KSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATAN 175
            S+LLNGKWELLYTTSQS+LQT+RPKFLRPNGKIYQAI+ DTLRAQNIETWPF+NQATAN
Sbjct: 122 NSDLLNGKWELLYTTSQSILQTQRPKFLRPNGKIYQAIDTDTLRAQNIETWPFYNQATAN 181

Query: 176 LVPLNSKRVAVKFDYFRIAGLV 197
           LVPLNS+RVAVKFD+F+IA L+
Sbjct: 182 LVPLNSRRVAVKFDFFKIASLI 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070527|ref|XP_002303164.1| predicted protein [Populus trichocarpa] gi|222840596|gb|EEE78143.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 112/144 (77%), Positives = 129/144 (89%), Gaps = 2/144 (1%)

Query: 56  RNRVSFFSGFS--TKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKE 113
           R  VSFF  FS  +K V+S K++L +AI PLDRGA A+P+DQ RVD+IA++LEAVNDIKE
Sbjct: 37  RTNVSFFQFFSAKSKDVKSLKQQLLEAIAPLDRGAVATPQDQKRVDEIAQELEAVNDIKE 96

Query: 114 PLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQAT 173
           P KSNLLNGKWELLYTTSQS+L+TKRPKFLR NGKIYQAIN DTLRAQN+ETWPFFNQAT
Sbjct: 97  PFKSNLLNGKWELLYTTSQSILKTKRPKFLRSNGKIYQAINADTLRAQNMETWPFFNQAT 156

Query: 174 ANLVPLNSKRVAVKFDYFRIAGLV 197
           ANLVPLN++RVAVKFD+FRIAGL+
Sbjct: 157 ANLVPLNTRRVAVKFDFFRIAGLI 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89355891|gb|ABD72269.1| plastid fibrillin 3 [Coffea canephora]

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 101/128 (78%), Positives = 119/128 (92%)

Query: 70  VESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELLYT 129
           +E+ K+EL +AI PLDRGAEA+ EDQ RVDQIARKLEAVN +KEPLKS+LLNGKWELLYT
Sbjct: 2   IETLKQELLEAIAPLDRGAEATAEDQERVDQIARKLEAVNKVKEPLKSSLLNGKWELLYT 61

Query: 130 TSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANLVPLNSKRVAVKFD 189
           TS+S+LQ +RPK LRPNGK+YQAIN+DTLRAQN+ETWPFFNQATANLVPLN++RVAVKFD
Sbjct: 62  TSKSVLQPQRPKLLRPNGKVYQAINVDTLRAQNMETWPFFNQATANLVPLNTRRVAVKFD 121

Query: 190 YFRIAGLV 197
            F+IAG++
Sbjct: 122 SFKIAGVI 129

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575408|ref|XP_002528606.1| structural molecule, putative [Ricinus communis] gi|223531951|gb|EEF33764.1| structural molecule, putative [Ricinus communis]

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 116/209 (55%), Positives = 146/209 (69%), Gaps = 13/209 (6%)

Query: 1   MAITCSSSSLICFSSDFASSSLN------LFYSKPNIII----RTHLLFCPRNQKPLNSS 50
           MA++ SSS  I  +S F+++  N       FY     I     +T  L    +    NS+
Sbjct: 10  MALSSSSSPAILTASHFSTNPPNPKLTTTTFYFSSRFITANYSKTSFLNLNSSNNDNNST 69

Query: 51  VSDKRRNRVSFFSGFSTKRVES--FKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAV 108
             DK R +VSFF  F  K+ ++   KEEL  AI  LDRGAEA+PEDQ RVD+IAR+LEAV
Sbjct: 70  FDDKWRAKVSFFPAFLRKKKDANVLKEELLDAIASLDRGAEATPEDQQRVDEIARQLEAV 129

Query: 109 NDIKEPLKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPF 168
           N  K+PLKS+L+NGKWEL+YTTSQS+LQT+RPKFLR     YQAIN+DTLRAQN+E+WPF
Sbjct: 130 NPTKQPLKSDLINGKWELIYTTSQSILQTQRPKFLRSKTN-YQAINVDTLRAQNMESWPF 188

Query: 169 FNQATANLVPLNSKRVAVKFDYFRIAGLV 197
           FNQ TA+L PLN+K+VAVKFD F+IA L+
Sbjct: 189 FNQVTADLTPLNAKKVAVKFDTFKIASLI 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226529185|ref|NP_001147518.1| structural molecule [Zea mays] gi|224032975|gb|ACN35563.1| unknown [Zea mays] gi|414872344|tpg|DAA50901.1| TPA: structural molecule [Zea mays]

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/141 (69%), Positives = 117/141 (82%), Gaps = 4/141 (2%)

Query: 61  FFSG----FSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLK 116
           FF+G       ++    KEEL  AI PLDRGAEA+PED+ RV+QI ++LEAVN +KEPLK
Sbjct: 121 FFTGNKGEKDAEKAMRLKEELLDAIAPLDRGAEATPEDKERVEQIVQQLEAVNQVKEPLK 180

Query: 117 SNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQATANL 176
           S+LLNGKWELLYTTS S+LQ +RPK+LRP GKIYQ+IN D LRAQN+ETWP+FNQ TANL
Sbjct: 181 SDLLNGKWELLYTTSTSILQPQRPKYLRPFGKIYQSINADNLRAQNMETWPYFNQVTANL 240

Query: 177 VPLNSKRVAVKFDYFRIAGLV 197
           VPLNS+RVAVKFDYF+I GL+
Sbjct: 241 VPLNSRRVAVKFDYFKIFGLI 261

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2092150	242	AT3G26070 [Arabidopsis thalian	0.72	0.595	0.519	7.2e-36
TAIR|locus:2092165	234	AT3G26080 [Arabidopsis thalian	0.755	0.645	0.496	2.2e-34

TAIR|locus:2092150 AT3G26070 [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 80/154 (51%), Positives = 104/154 (67%)

Query:    53 DKRRNRV----SFFSGFSTK--RVES---FKEELFQAIKPLDRGAEASPEDQARVDQIAR 103
             D+ R RV    SF   F T+  R E     K+EL +AI+PL+RGA ASP+DQ R+DQ+AR
Sbjct:    45 DRERLRVQAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLAR 104

Query:   104 KLEAVNDIKEPLKSNLLNGKWEXXXXXXXXXXXXKRPKFLRPNGKIYQAINIDTLRAQNI 163
             K+EAVN  KEPLKS+L+NGKWE            K+P+FLR     YQ+IN+DTL+ QN+
Sbjct:   105 KVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITN-YQSINVDTLKVQNM 163

Query:   164 ETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLV 197
             ETWPF+N  T ++ PLNSK+VAVK   F+I G +
Sbjct:   164 ETWPFYNSVTGDIKPLNSKKVAVKLQVFKILGFI 197

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2092165 AT3G26080 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 79/159 (49%), Positives = 103/159 (64%)

Query:    45 KPLNSSVSDKRRNRV-SFFS-----GFSTKRVESFKEELFQAIKPLDRGAEASPEDQARV 98
             K L+    D+ R R+ + FS     G + KR +  K EL +AI+PL+RGA ASP+DQ  +
Sbjct:    32 KLLSIRKGDRERLRIQAVFSFPPRNGGAEKR-KQLKHELVEAIEPLERGATASPDDQLLI 90

Query:    99 DQIARKLEAVNDIKEPLKSNLLNGKWEXXXXXXXXXXXXKRPKFLRPNGKIYQAINIDTL 158
             DQ+ARK+EAVN  KEPLKS+L+NGKWE            K+P+FLR     YQ IN+DTL
Sbjct:    91 DQLARKVEAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLRSLTN-YQCINMDTL 149

Query:   159 RAQNIETWPFFNQATANLVPLNSKRVAVKFDYFRIAGLV 197
             + Q +ETWPF+N  T +L PLNSK VAVK   F+I G +
Sbjct:   150 KVQRMETWPFYNSVTGDLTPLNSKTVAVKLQVFKILGFI 188


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      200       168   0.00079  108 3  11 22  0.37    32
                                                     31  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  140 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.59u 0.07s 15.66t   Elapsed:  00:00:00
  Total cpu time:  15.59u 0.07s 15.66t   Elapsed:  00:00:00
  Start:  Fri May 10 02:24:52 2013   End:  Fri May 10 02:24:52 2013

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026576001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (256 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026129001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (273 aa)			•	•					0.521
	GSVIVG00022574001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (207 aa)			•						0.505
	GSVIVG00035640001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (118 aa)			•						0.504
	GSVIVG00026973001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (166 aa)			•						0.503
	GSVIVG00009465001	SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (234 aa)			•						0.502
	GSVIVG00006255001	SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (442 aa)			•						0.502
	GSVIVG00007397001	SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (251 aa)			•						0.501
	GSVIVG00002625001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (149 aa)			•						0.498
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)			•						0.497
	GSVIVG00027603001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (254 aa)			•						0.495

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	5e-24

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score = 93.3 bits (232), Expect = 5e-24
 Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 10/128 (7%)

Query: 71  ESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYT 129
           E  K +L  AI   +RG  AS +D+A ++    +LEA+N    P +S +LLNGKW LLYT
Sbjct: 1   ERLKRKLLDAIYGTNRGLRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYT 60

Query: 130 TSQ---SLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETW--PFFN---QATANLVPLNS 181
           TS+    LL   R   L+  G+IYQ I+++ L   N  T+  P         A     + 
Sbjct: 61  TSKELLPLLARGRLPLLKV-GQIYQTIDVNNLTVYNSVTFSGPLAEGSFSVRAKFEIRSP 119

Query: 182 KRVAVKFD 189
           KRV ++F+
Sbjct: 120 KRVQIRFE 127

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	99.96

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=99.96  E-value=5e-29  Score=206.24  Aligned_cols=123  Identities=34%  Similarity=0.584  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCcC-CCCCceEEEEEecccccccc---CCCCccccc
Q 029010           71 ESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYTTSQSLLQT---KRPKFLRPN  146 (200)
Q Consensus        71 ~~lK~~LL~ai~~t~RG~~as~~~r~~I~elI~~LEalNPt~~P~~s-~lL~G~W~L~YTSs~~~l~~---~~p~~l~~v  146 (200)
                      +++|++||+++++++||+.+++++|++|+++|++||++||+++|+++ ++|+|+|+|+|||+.++.+.   .++++ ..+
T Consensus         1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~-~~~   79 (198)
T PF04755_consen    1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPG-VRV   79 (198)
T ss_pred             ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccc-ccc
Confidence            47999999999999999999999999999999999999999999998 99999999999999998854   44444 369


Q ss_pred             cceEEEEeCCCCeEEEEEeC---CCc---ceeeeEEEEcCCceEEEEEeeEEEE
Q 029010          147 GKIYQAINIDTLRAQNIETW---PFF---NQATANLVPLNSKRVAVKFDYFRIA  194 (200)
Q Consensus       147 g~i~Q~Id~~~~~v~N~v~f---p~~---~~V~A~~~v~s~~Rv~V~F~~~~i~  194 (200)
                      |+|||+||.+++++.|+|.|   |++   ..+.|.+++.+++|+.|+|+++.+.
T Consensus        80 ~~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~  133 (198)
T PF04755_consen   80 GRVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLK  133 (198)
T ss_pred             cceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEc
Confidence            99999999999999999994   533   4888999999999999999998873

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00