Citrus Sinensis ID: 029015

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MDCISSQGELLTHTQTTKFNYRLATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFRLSHDDEDQFEENGLLPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYDDDDDTKWNDYIWGH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEcccccccEEccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEccccccccccccccccccccEEEcEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHccccEEcccccHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccEEccHHHHcccHHHHHHHHHccccccccccccccccccccccccEEEccc
Coil and Loop (DISEMBL)
mdcissqgellthtqttkfnyrlatsspkkragrrvfretrhpifrgvrmrnnnkwvcelrepnkksriwlgtyptpemaARAHDVAALALRGkstclnfadsawrlpvpasadaDDVRKAAAEAAEAFrlshddedqfeengllpeknvfymdeeavfdmpGLLVNMaeglllsppplligceydddddtkwndyiwgh
Flexible Loop (DISEMBL)
mdcissqgellthtqttkfnyrlatsspkkragrrvfretrhpifrgvrmrnnnkwvcelrepnkksriWLGTYPTPEMAARAHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAfrlshddedqfEENGLLPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYDDDDDTKWNDYIWGH
Low Complexity Region (SEG)
MDCISSQGELLTHTQTTKFNYRLATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMaarahdvaalalrGKSTCLNFADSAWRLPVPasadaddvrkaaaeaaeaFRLSHDDEDQFEENGLLPEKNVFYMDEEAVFDMPGLLVNMAEGlllspppllIGCEYdddddTKWNDYIWGH
Disordered region (IsUnstruct)
***********************************VFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNFADSAWRLPV**********************************LLPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYDDDDDTKWNDYIW**
Disordered Region (DISOPRED)
********************************************FRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNFADSAWR*********************************************YMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYDDDDDTKWNDYIWGH
Disordered Region (DISEMBL)
********ELLTHTQTTKFNYRLA***********VFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFRLSHDDEDQFEENGLLPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYDDDDDTKWNDYIWGH
Disordered Region (DISPRO)
***************************************TRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFR******************NVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYDDDDDTKWNDYIWGH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDCISSQGELLTHTQTTKFNYRLATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFRLSHDDEDQFEENGLLPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYDDDDDTKWNDYIWGH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9SYS6	216	Dehydration-responsive el	yes	no	0.88	0.814	0.575	7e-53
Q9FJ93	224	Dehydration-responsive el	no	no	0.845	0.754	0.532	3e-51
P93835	213	Dehydration-responsive el	no	no	0.84	0.788	0.616	4e-50
Q9M0L0	216	Dehydration-responsive el	no	no	0.86	0.796	0.588	3e-49
Q9SGJ6	181	Dehydration-responsive el	no	no	0.735	0.812	0.583	2e-45
Q9LN86	209	Dehydration-responsive el	no	no	0.54	0.516	0.740	4e-43
Q8S9Z5	219	Dehydration-responsive el	yes	no	0.76	0.694	0.518	2e-39
A2WZI4	219	Dehydration-responsive el	N/A	no	0.76	0.694	0.518	2e-39
Q8H273	219	Dehydration-responsive el	no	no	0.825	0.753	0.469	9e-37
A2XWL6	219	Dehydration-responsive el	N/A	no	0.825	0.753	0.469	9e-37

>sp|Q9SYS6|DRE1C_ARATH Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2

 Score =  206 bits (525), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 135/191 (70%), Gaps = 15/191 (7%)

Query: 19  FNYRLATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPE 78
           ++ +LATS PKK AGR+ FRETRHPI+RGVR RN+ KWVCELREPNKK+RIWLGT+ T E
Sbjct: 25  YSPKLATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAE 84

Query: 79  MAARAHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFR--LSH--- 133
           MAARAHDVAA+ALRG+S CLNFADSAWRL +P S  A +++KAAAEAA  F+  + H   
Sbjct: 85  MAARAHDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQKAAAEAALNFQDEMCHMTT 144

Query: 134 -----DDEDQFEENGLLPE--KNVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYD 186
                D E+   E    PE  ++ FYMDEEA+  M  LL NMAEG+LL  P +     +D
Sbjct: 145 DAHGLDMEETLVEAIYTPEQSQDAFYMDEEAMLGMSSLLDNMAEGMLLPSPSVQWNYNFD 204

Query: 187 ---DDDDTKWN 194
              DDD + W+
Sbjct: 205 VEGDDDVSLWS 215

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ93|DRE1D_ARATH Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1

 Score =  201 bits (511), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/197 (53%), Positives = 134/197 (68%), Gaps = 28/197 (14%)

Query: 14  TQTTKFNYRLATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGT 73
           + +++ + +LA+S PKKRAGR+ FRETRHPI+RGVR RN+ KWVCE+REPNKKSRIWLGT
Sbjct: 23  SDSSECSPKLASSCPKKRAGRKKFRETRHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGT 82

Query: 74  YPTPEMAARAHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFR--- 130
           +PT EMAARAHDVAALALRG+S CLNFADSAWRL +P +    +++KAA+EAA AF+   
Sbjct: 83  FPTVEMAARAHDVAALALRGRSACLNFADSAWRLRIPETTCPKEIQKAASEAAMAFQNET 142

Query: 131 ------------------LSHDDEDQFEENGLLPEKNVFYMDEEAVFDMPGLLVNMAEGL 172
                             +   +    E+NG      VFYMD+EA+  MP    NMAEG+
Sbjct: 143 TTEGSKTAAEAEEAAGEGVREGERRAEEQNG-----GVFYMDDEALLGMPNFFENMAEGM 197

Query: 173 LLSPPPLLIGCEYDDDD 189
           LL PP   +G  ++D D
Sbjct: 198 LLPPPE--VGWNHNDFD 212

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|P93835|DRE1B_ARATH Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2

 Score =  197 bits (501), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 111/180 (61%), Positives = 130/180 (72%), Gaps = 12/180 (6%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LATS PKK AGR+ FRETRHPI+RGVR RN+ KWV E+REPNKK+RIWLGT+ T EMAAR
Sbjct: 26  LATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAAR 85

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFR--------LSH- 133
           AHDVAALALRG+S CLNFADSAWRL +P S  A D++KAAAEAA AF+         +H 
Sbjct: 86  AHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDTTTTNHG 145

Query: 134 -DDEDQFEENGLLPEKN--VFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYDDDDD 190
            D E+   E    PE++   FYMDEE +F MP LL NMAEG+LL PP +     YD + D
Sbjct: 146 LDMEETMVEAIYTPEQSEGAFYMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHNYDGEGD 205

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0L0|DRE1A_ARATH Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2

 Score =  194 bits (494), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 132/187 (70%), Gaps = 15/187 (8%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LA+S PKK AGR+ FRETRHPI+RGVR RN+ KWVCE+REPNKK+RIWLGT+ T EMAAR
Sbjct: 29  LASSCPKKPAGRKKFRETRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAAR 88

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFR---------LSH 133
           AHDVAALALRG+S CLNFADSAWRL +P S  A D++KAAAEAA AF+            
Sbjct: 89  AHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAFQDEMCDATTDHGF 148

Query: 134 DDEDQFEENGLLPEK--NVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEY----DD 187
           D E+   E     E+  N FYM +EA+F+MP LL NMAEG+LL  P +     +    DD
Sbjct: 149 DMEETLVEAIYTAEQSENAFYMHDEAMFEMPSLLANMAEGMLLPLPSVQWNHNHEVDGDD 208

Query: 188 DDDTKWN 194
           DD + W+
Sbjct: 209 DDVSLWS 215

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SGJ6|DRE1E_ARATH Dehydration-responsive element-binding protein 1E OS=Arabidopsis thaliana GN=DREB1E PE=2 SV=1

 Score =  182 bits (461), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/156 (58%), Positives = 114/156 (73%), Gaps = 9/156 (5%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           +A   PKKRAGRR+F+ETRHPI+RGVR R+ +KWVCE+REP  + R+WLGTYPT +MAAR
Sbjct: 8   VAEMKPKKRAGRRIFKETRHPIYRGVRRRDGDKWVCEVREPIHQRRVWLGTYPTADMAAR 67

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFRLSHDDEDQFEEN 142
           AHDVA LALRG+S CLNF+DSAWRLPVPAS D D +R+ AAEAAE FR       +F   
Sbjct: 68  AHDVAVLALRGRSACLNFSDSAWRLPVPASTDPDTIRRTAAEAAEMFR-----PPEFSTG 122

Query: 143 -GLLPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPP 177
             +LP  + F   +E V    G+++ +AE  L+SPP
Sbjct: 123 ITVLPSASEFDTSDEGV---AGMMMRLAEEPLMSPP 155

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN86|DRE1F_ARATH Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana GN=DREB1F PE=2 SV=1

 Score =  174 bits (440), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 91/108 (84%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LA   PKKRAGRRVF+ETRHP++RG+R RN +KWVCE+REP  + RIWLGTYPT +MAAR
Sbjct: 8   LAEMRPKKRAGRRVFKETRHPVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAAR 67

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFR 130
           AHDVA LALRG+S CLNFADSAWRLPVP S D D +R+ AAEAAE FR
Sbjct: 68  AHDVAVLALRGRSACLNFADSAWRLPVPESNDPDVIRRVAAEAAEMFR 115

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S9Z5|DRE1F_ORYSJ Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 113/164 (68%), Gaps = 12/164 (7%)

Query: 28  PKKRAGRRVFRETRHPIFRGVRMR-NNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDV 86
           PK+RAGR+ FRETRHP++RGVR R   ++WVCE+REP  ++RIWLGTYPTPEMAARAHDV
Sbjct: 30  PKRRAGRKKFRETRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDV 89

Query: 87  AALALRG-KSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFR-------LSHDDEDQ 138
           AA+ALRG +   LNF DS   LP   +A  +D+R AAA+AAE +R       L  D ++ 
Sbjct: 90  AAIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAAELYRRPPPPLALPEDPQEG 149

Query: 139 FEENGLLPEKN---VFYMDEEAVFDMPGLLVNMAEGLLLSPPPL 179
               G           ++DE+A+FDMPGL+ +MA G++L+PP +
Sbjct: 150 TSGGGATATSGRPAAVFVDEDAIFDMPGLIDDMARGMMLTPPAI 193

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WZI4|DRE1F_ORYSI Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. indica GN=DREB1F PE=2 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 113/164 (68%), Gaps = 12/164 (7%)

Query: 28  PKKRAGRRVFRETRHPIFRGVRMR-NNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDV 86
           PK+RAGR+ FRETRHP++RGVR R   ++WVCE+REP  ++RIWLGTYPTPEMAARAHDV
Sbjct: 30  PKRRAGRKKFRETRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDV 89

Query: 87  AALALRG-KSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFR-------LSHDDEDQ 138
           AA+ALRG +   LNF DS   LP   +A  +D+R AAA+AAE +R       L  D ++ 
Sbjct: 90  AAIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAAELYRRPPPPLALPEDPQEG 149

Query: 139 FEENGLLPEKN---VFYMDEEAVFDMPGLLVNMAEGLLLSPPPL 179
               G           ++DE+A+FDMPGL+ +MA G++L+PP +
Sbjct: 150 TSGGGATATSGRPAAVFVDEDAIFDMPGLIDDMARGMMLTPPAI 193

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8H273|DRE1E_ORYSJ Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. japonica GN=DREB1E PE=2 SV=1

 Score =  153 bits (386), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 117/181 (64%), Gaps = 16/181 (8%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           ++++ PK+RAGR  F+ETRHP+++GVR RN  +WVCE+REP+ K RIWLGT+ T EMAAR
Sbjct: 31  VSSAPPKRRAGRTKFKETRHPVYKGVRSRNPGRWVCEVREPHGKQRIWLGTFETAEMAAR 90

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPA-SADADDVRKAAAEAAEAFRLSHDDEDQFEE 141
           AHDVAA+ALRG++ CLNFADS  RL VP   A  +++R+AA EAAE FR +    +   E
Sbjct: 91  AHDVAAMALRGRAACLNFADSPRRLRVPPLGAGHEEIRRAAVEAAELFRPAPGQHNAAAE 150

Query: 142 NG-------------LLPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYDDD 188
                          L  +   + MD    F+M G L +MA+G+L+ PPPL     + ++
Sbjct: 151 AAAAVAAQATAASAELFADFPCYPMD-GLEFEMQGYL-DMAQGMLIEPPPLAGQSTWAEE 208

Query: 189 D 189
           D
Sbjct: 209 D 209

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XWL6|DRE1E_ORYSI Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. indica GN=DREB1E PE=3 SV=1

 Score =  153 bits (386), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 117/181 (64%), Gaps = 16/181 (8%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           ++++ PK+RAGR  F+ETRHP+++GVR RN  +WVCE+REP+ K RIWLGT+ T EMAAR
Sbjct: 31  VSSAPPKRRAGRTKFKETRHPVYKGVRSRNPGRWVCEVREPHGKQRIWLGTFETAEMAAR 90

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPA-SADADDVRKAAAEAAEAFRLSHDDEDQFEE 141
           AHDVAA+ALRG++ CLNFADS  RL VP   A  +++R+AA EAAE FR +    +   E
Sbjct: 91  AHDVAAMALRGRAACLNFADSPRRLRVPPLGAGHEEIRRAAVEAAELFRPAPGQHNAAAE 150

Query: 142 NG-------------LLPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYDDD 188
                          L  +   + MD    F+M G L +MA+G+L+ PPPL     + ++
Sbjct: 151 AAAAVAAQATAASAELFADFPCYPMD-GLEFEMQGYL-DMAQGMLIEPPPLAGQSTWAEE 208

Query: 189 D 189
           D
Sbjct: 209 D 209

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
111218108	243	CBF/DREB-like transcription factor 1 [Ci	0.835	0.687	0.736	8e-66
402483605	230	CRT/DRE binding factor 1 [Morus alba var	0.885	0.769	0.644	4e-60
145322756	209	putative C-repeat binding protein 4 [Pop	0.75	0.717	0.740	6e-60
291327435	208	CBF2 protein [Populus balsamifera]	0.775	0.745	0.707	1e-59
85726210	231	CBF1 [Populus tomentosa]	0.775	0.670	0.701	2e-59
291327453	211	CBF2 protein [Populus trichocarpa]	0.775	0.734	0.707	2e-59
224053977	231	AP2/ERF domain-containing transcription	0.775	0.670	0.707	3e-59
224058611	213	AP2/ERF domain-containing transcription	0.765	0.718	0.723	1e-58
171191045	189	CRT binding factor 5 [Solanum tuberosum]	0.875	0.925	0.640	3e-58
94503780	231	AP2 domain CBF protein [Populus suaveole	0.775	0.670	0.690	5e-58

>gi|111218108|gb|ABH08746.1| CBF/DREB-like transcription factor 1 [Citrus trifoliata]

 Score =  255 bits (651), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 137/186 (73%), Positives = 149/186 (80%), Gaps = 19/186 (10%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LATS PKKRAGRRVF+ETRHPIFRGVR RNNNKWVCELREPNK++RIWLGTYP+PEMAAR
Sbjct: 45  LATSRPKKRAGRRVFKETRHPIFRGVRRRNNNKWVCELREPNKQTRIWLGTYPSPEMAAR 104

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFRLSHDD------- 135
           AHDVAALALRGKS CLNFADS WRLPVPAS DA D+RKAAAEAAEAFR   D+       
Sbjct: 105 AHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIH 164

Query: 136 -------EDQFEENGLLPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYDDD 188
                  +   +EN LLPE NV YMDE+AVFDMPGLL +MAEGLLLSPPPL+ G    DD
Sbjct: 165 HVKLEEVQKTMQENTLLPE-NVLYMDEQAVFDMPGLLADMAEGLLLSPPPLIFG----DD 219

Query: 189 DDTKWN 194
           D  KW+
Sbjct: 220 DVMKWD 225

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402483605|gb|AFQ59977.1| CRT/DRE binding factor 1 [Morus alba var. multicaulis]

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/183 (64%), Positives = 143/183 (78%), Gaps = 6/183 (3%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LA+S PKKRAGR+ F+ETRHP++RGVR RN+ KWVCE+REPNKK+RIWLGT+PT EMAAR
Sbjct: 47  LASSCPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTAEMAAR 106

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFRLSHDDEDQFE-- 140
           AHDVAA+ALRG+STCLNFADSAWRLPVPAS D  D++KAA+EAAEAFR     ED  E  
Sbjct: 107 AHDVAAIALRGRSTCLNFADSAWRLPVPASPDPKDIQKAASEAAEAFRPVDMAEDTGEKP 166

Query: 141 --ENGLLPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLLIGCEYDDDDDTKW-NDYI 197
             +  +   ++VF+MDEEAVF MPGLL NMAEG+LL PPP  +  +Y  DD   + N  +
Sbjct: 167 AADAAVAESEDVFFMDEEAVFGMPGLLTNMAEGMLL-PPPHCMEHDYSSDDAEAYANVSL 225

Query: 198 WGH 200
           W +
Sbjct: 226 WSY 228

Source: Morus alba var. multicaulis

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145322756|gb|ABP64695.1| putative C-repeat binding protein 4 [Populus trichocarpa]

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 120/162 (74%), Positives = 131/162 (80%), Gaps = 12/162 (7%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LATS PKKRAGRR+FRETRHP+FRGVR RN NKWVCE+REPNKKSRIWLGTYPTPEMAAR
Sbjct: 29  LATSFPKKRAGRRIFRETRHPVFRGVRKRNGNKWVCEMREPNKKSRIWLGTYPTPEMAAR 88

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFRLSHDDEDQFEEN 142
           AHDVAALALRGKS CLNFADSAWRLPVP S D+ D+ +AA EAAE FR       +F EN
Sbjct: 89  AHDVAALALRGKSACLNFADSAWRLPVPVSKDSKDITRAANEAAELFR-----PQEFGEN 143

Query: 143 GLLPEKNVFYMD-------EEAVFDMPGLLVNMAEGLLLSPP 177
            +  ++ VF M        EEAVFDMPGLLV+MAEGLLLSPP
Sbjct: 144 DVFFKEAVFAMPGENDVFFEEAVFDMPGLLVDMAEGLLLSPP 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|291327435|emb|CBJ94884.1| CBF2 protein [Populus balsamifera]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/171 (70%), Positives = 133/171 (77%), Gaps = 16/171 (9%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LATS PKKRAGRR+F+ETRHPIFRGVR RN +KWVCELREPNKKSRIWLGTYPTPEMAAR
Sbjct: 34  LATSRPKKRAGRRIFKETRHPIFRGVRKRNGDKWVCELREPNKKSRIWLGTYPTPEMAAR 93

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFRLS---------H 133
           AHDVAALA RGKS CLNFADSAWRLPVP S +A D+R+AA+EAAE FR S          
Sbjct: 94  AHDVAALAFRGKSACLNFADSAWRLPVPISNEAKDIRRAASEAAELFRTSDLGGQVMEDF 153

Query: 134 DDEDQFEENGL-------LPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPP 177
             ED+ E           LP +NV Y+DEEA F+MPGLL +MAEGLLLSPP
Sbjct: 154 RREDRGEVCSSTNDDIRDLPSENVGYIDEEAEFNMPGLLASMAEGLLLSPP 204

Source: Populus balsamifera

Species: Populus balsamifera

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|85726210|gb|ABC79626.1| CBF1 [Populus tomentosa]

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/171 (70%), Positives = 131/171 (76%), Gaps = 16/171 (9%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LA S PKKRAGRR+F+ETRHPIFRGVR RN +KWVCELREPNKKSRIWLGTYPTPEMAAR
Sbjct: 41  LAASRPKKRAGRRIFKETRHPIFRGVRKRNGDKWVCELREPNKKSRIWLGTYPTPEMAAR 100

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFRLS----HDDEDQ 138
           AHDVAALA RGKS CLNFADSAWRLP P S +A D+R+AA+EAAE FR S       ED 
Sbjct: 101 AHDVAALAFRGKSACLNFADSAWRLPAPISNEAKDIRRAASEAAELFRTSDLGGQVMEDH 160

Query: 139 FEENGL------------LPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPP 177
             EN              LP +NV Y+DEEA F++PGLL NMAEGLLLSPP
Sbjct: 161 TTENRGEVCSSTNDDIRDLPSENVSYIDEEAEFNLPGLLANMAEGLLLSPP 211

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|291327453|emb|CBJ94893.1| CBF2 protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/171 (70%), Positives = 133/171 (77%), Gaps = 16/171 (9%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LATS PKKRAGRR+F+ETRHPIFRGVR RN +KWVCELREPNKKSRIWLGTYPTPEMAAR
Sbjct: 33  LATSRPKKRAGRRIFKETRHPIFRGVRKRNGDKWVCELREPNKKSRIWLGTYPTPEMAAR 92

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFRLS---------H 133
           AHDVAALA RGKS CLNFADSAWRLPVP S +A D+R+AA+EAAE FR S          
Sbjct: 93  AHDVAALAFRGKSACLNFADSAWRLPVPISNEAKDIRRAASEAAELFRTSDLGGQVMEDF 152

Query: 134 DDEDQFEENGL-------LPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPP 177
             ED+ E           LP +NV Y+DEEA F+MPGLL +MAEGLLLSPP
Sbjct: 153 RREDRGEVCSSTNDDIRDLPSENVGYIDEEAEFNMPGLLASMAEGLLLSPP 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053977|ref|XP_002298067.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|134038594|gb|ABO48365.1| C-repeat binding facor 3 [Populus trichocarpa] gi|222845325|gb|EEE82872.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 121/171 (70%), Positives = 133/171 (77%), Gaps = 16/171 (9%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LATS PKKRAGRR+F+ETRHPIFRGVR RN +KWVCELREPNKKSRIWLGTYPTPEMAAR
Sbjct: 41  LATSRPKKRAGRRIFKETRHPIFRGVRKRNGDKWVCELREPNKKSRIWLGTYPTPEMAAR 100

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFRLS---------H 133
           AHDVAALA RGKS CLNFADSAWRLPVP S +A D+R+AA+EAAE FR S          
Sbjct: 101 AHDVAALAFRGKSACLNFADSAWRLPVPISNEAKDIRRAASEAAELFRTSDLGGQVMEDF 160

Query: 134 DDEDQFEENGL-------LPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPP 177
             ED+ E           LP +NV Y+DEEA F+MPGLL +MAEGLLLSPP
Sbjct: 161 RREDRGEVCSSTNDDIRDLPSENVGYIDEEAEFNMPGLLASMAEGLLLSPP 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058611|ref|XP_002299565.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222846823|gb|EEE84370.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/163 (72%), Positives = 129/163 (79%), Gaps = 10/163 (6%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LATS PKKRAGRR+FRETRHP+FRGVR RN NKWVCE+REPNKKSRIWLGTYPTPEMAAR
Sbjct: 29  LATSFPKKRAGRRIFRETRHPVFRGVRKRNGNKWVCEMREPNKKSRIWLGTYPTPEMAAR 88

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFR--------LSHD 134
           AHDVAALALRGKS CLNFADSAWRLPVP S D+ D+ +AA EAAE FR            
Sbjct: 89  AHDVAALALRGKSACLNFADSAWRLPVPVSKDSKDITRAANEAAELFRPQEFGGHPAKQQ 148

Query: 135 DEDQFEENGLLPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPP 177
           D +      +  E +VF+  EEAVFDMPGLLV+MAEGLLLSPP
Sbjct: 149 DSNAEAVFAMPGENDVFF--EEAVFDMPGLLVDMAEGLLLSPP 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171191045|gb|ACB45082.1| CRT binding factor 5 [Solanum tuberosum]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/178 (64%), Positives = 137/178 (76%), Gaps = 3/178 (1%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LA+++PKK AGR+ FRETRHP++RGVRMRN+ KWVCE+REPNKKSRIWLGTYPT EMAAR
Sbjct: 12  LASNNPKKPAGRKKFRETRHPVYRGVRMRNSGKWVCEVREPNKKSRIWLGTYPTAEMAAR 71

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFRLSHDDEDQFEEN 142
           AHDVAA+ALRG S CLNFADSAWRLP PAS+D  D++KAAAEAAE+FR    +E+     
Sbjct: 72  AHDVAAIALRGGSACLNFADSAWRLPTPASSDTKDIQKAAAEAAESFRPLKSEEESVVST 131

Query: 143 GLLPEK--NVFYMDEEAVFDMPGLLVNMAEGLLLSPPPLL-IGCEYDDDDDTKWNDYI 197
           G       N+F+MDEEA+F MPGLL NMAEGL++ PP    +G   + DD   W+  I
Sbjct: 132 GDQSSTPDNMFFMDEEALFCMPGLLTNMAEGLMVPPPQCTEMGDHVEADDMPLWSYSI 189

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|94503780|gb|ABF29699.1| AP2 domain CBF protein [Populus suaveolens]

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 118/171 (69%), Positives = 128/171 (74%), Gaps = 16/171 (9%)

Query: 23  LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAAR 82
           LA S PKKRAGRR+F+ETRHPIFRGVR RN +KWVCELREPNKKSRIWLGTYPTPEMAAR
Sbjct: 41  LAASRPKKRAGRRIFKETRHPIFRGVRKRNGDKWVCELREPNKKSRIWLGTYPTPEMAAR 100

Query: 83  AHDVAALALRGKSTCLNFADSAWRLPVPASADADDVRKAAAEAAEAFR---LSHDDEDQF 139
           AHDVAALA RGKS CLNFADSAWRLP P S +A D+R+AA EAAE FR   L     + F
Sbjct: 101 AHDVAALAFRGKSACLNFADSAWRLPAPISNEAKDIRRAAGEAAELFRTSDLGGQVMEDF 160

Query: 140 EENGL-------------LPEKNVFYMDEEAVFDMPGLLVNMAEGLLLSPP 177
              G              LP +NV Y+DEEA F+MP LL NMAEGLLLSPP
Sbjct: 161 TTEGRGEVCSSSNDDIRDLPSENVSYIDEEAEFNMPWLLANMAEGLLLSPP 211

Source: Populus suaveolens

Species: Populus suaveolens

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2131834	216	CBF2 "C-repeat/DRE binding fac	0.765	0.708	0.490	5.1e-35
TAIR|locus:2131849	216	DREB1A "dehydration response e	0.745	0.689	0.493	1.1e-34
TAIR|locus:2131854	213	CBF1 "C-repeat/DRE binding fac	0.745	0.699	0.496	3.6e-34
TAIR|locus:2173113	224	CBF4 "C-repeat-binding factor	0.75	0.669	0.487	3.6e-34
TAIR|locus:2195052	209	DDF1 "DWARF AND DELAYED FLOWER	0.44	0.421	0.636	7.1e-29
TAIR|locus:2015168	181	ddf2 "DWARF AND DELAYED FLOWER	0.7	0.773	0.429	1.9e-28
TAIR|locus:2044845	184	HRD "HARDY" [Arabidopsis thali	0.79	0.858	0.333	4.9e-21
TAIR|locus:2195062	192	AT1G12630 [Arabidopsis thalian	0.345	0.359	0.442	6.4e-19
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.35	0.237	0.528	9.2e-18
TAIR|locus:2103301	256	AT3G60490 [Arabidopsis thalian	0.475	0.371	0.437	2.9e-17

TAIR|locus:2131834 CBF2 "C-repeat/DRE binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 81/165 (49%), Positives = 97/165 (58%)

Query:    19 FNYRLATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPE 78
             ++ +LATS PKK AGR+ FRETRHPI+RGVR RN+ KWVCELREPNKK+RIWLGT+ T E
Sbjct:    25 YSPKLATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAE 84

Query:    79 MXXXXXXXXXXXXXGKSTCLNFADSAWRLPVPXXXXXXXXXXXXXXXXXXFR--LSH--- 133
             M             G+S CLNFADSAWRL +P                  F+  + H   
Sbjct:    85 MAARAHDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQKAAAEAALNFQDEMCHMTT 144

Query:   134 -----DDEDQFEENGLLPEKN--VFYMDEEAVFDMPGLLVNMAEG 171
                  D E+   E    PE++   FYMDEEA+  M  LL NMAEG
Sbjct:   145 DAHGLDMEETLVEAIYTPEQSQDAFYMDEEAMLGMSSLLDNMAEG 189

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009631 "cold acclimation" evidence=IMP

GO:0009409 "response to cold" evidence=IEP;TAS

TAIR|locus:2131849 DREB1A "dehydration response element B1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 79/160 (49%), Positives = 94/160 (58%)

Query:    23 LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMXXX 82
             LA+S PKK AGR+ FRETRHPI+RGVR RN+ KWVCE+REPNKK+RIWLGT+ T EM   
Sbjct:    29 LASSCPKKPAGRKKFRETRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAAR 88

Query:    83 XXXXXXXXXXGKSTCLNFADSAWRLPVPXXXXXXXXXXXXXXXXXXFR-------LSH-- 133
                       G+S CLNFADSAWRL +P                  F+         H  
Sbjct:    89 AHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAFQDEMCDATTDHGF 148

Query:   134 DDEDQFEENGLLPEK--NVFYMDEEAVFDMPGLLVNMAEG 171
             D E+   E     E+  N FYM +EA+F+MP LL NMAEG
Sbjct:   149 DMEETLVEAIYTAEQSENAFYMHDEAMFEMPSLLANMAEG 188

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=IEP;RCA;IDA;IMP;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP;IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2131854 CBF1 "C-repeat/DRE binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 80/161 (49%), Positives = 94/161 (58%)

Query:    23 LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMXXX 82
             LATS PKK AGR+ FRETRHPI+RGVR RN+ KWV E+REPNKK+RIWLGT+ T EM   
Sbjct:    26 LATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAAR 85

Query:    83 XXXXXXXXXXGKSTCLNFADSAWRLPVPXXXXXXXXXXXXXXXXXXFR--------LSH- 133
                       G+S CLNFADSAWRL +P                  F+         +H 
Sbjct:    86 AHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDTTTTNHG 145

Query:   134 -DDEDQFEENGLLPEKN--VFYMDEEAVFDMPGLLVNMAEG 171
              D E+   E    PE++   FYMDEE +F MP LL NMAEG
Sbjct:   146 LDMEETMVEAIYTPEQSEGAFYMDEETMFGMPTLLDNMAEG 186

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009409 "response to cold" evidence=IEP;IMP;TAS

GO:0009631 "cold acclimation" evidence=IEP;IMP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

TAIR|locus:2173113 CBF4 "C-repeat-binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 81/166 (48%), Positives = 96/166 (57%)

Query:    22 RLATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMXX 81
             +LA+S PKKRAGR+ FRETRHPI+RGVR RN+ KWVCE+REPNKKSRIWLGT+PT EM  
Sbjct:    31 KLASSCPKKRAGRKKFRETRHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAA 90

Query:    82 XXXXXXXXXXXGKSTCLNFADSAWRLPVPXXXXXXXXXXXXXXXXXXFRLSHDDED---- 137
                        G+S CLNFADSAWRL +P                  F+     E     
Sbjct:    91 RAHDVAALALRGRSACLNFADSAWRLRIPETTCPKEIQKAASEAAMAFQNETTTEGSKTA 150

Query:   138 -QFEE---NGL------LPEKN--VFYMDEEAVFDMPGLLVNMAEG 171
              + EE    G+        E+N  VFYMD+EA+  MP    NMAEG
Sbjct:   151 AEAEEAAGEGVREGERRAEEQNGGVFYMDDEALLGMPNFFENMAEG 196

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2195052 DDF1 "DWARF AND DELAYED FLOWERING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 56/88 (63%), Positives = 65/88 (73%)

Query:    23 LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMXXX 82
             LA   PKKRAGRRVF+ETRHP++RG+R RN +KWVCE+REP  + RIWLGTYPT +M   
Sbjct:     8 LAEMRPKKRAGRRVFKETRHPVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAAR 67

Query:    83 XXXXXXXXXXGKSTCLNFADSAWRLPVP 110
                       G+S CLNFADSAWRLPVP
Sbjct:    68 AHDVAVLALRGRSACLNFADSAWRLPVP 95

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010371 "regulation of gibberellin biosynthetic process" evidence=IMP

GO:0016049 "cell growth" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009651 "response to salt stress" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0009408 "response to heat" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0050826 "response to freezing" evidence=IMP

TAIR|locus:2015168 ddf2 "DWARF AND DELAYED FLOWERING 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 64/149 (42%), Positives = 84/149 (56%)

Query:    23 LATSSPKKRAGRRVFRETRHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMXXX 82
             +A   PKKRAGRR+F+ETRHPI+RGVR R+ +KWVCE+REP  + R+WLGTYPT +M   
Sbjct:     8 VAEMKPKKRAGRRIFKETRHPIYRGVRRRDGDKWVCEVREPIHQRRVWLGTYPTADMAAR 67

Query:    83 XXXXXXXXXXGKSTCLNFADSAWRLPVPXXXXXXXXXXXXXXXXXXFRLSHDDEDQFEEN 142
                       G+S CLNF+DSAWRLPVP                  FR       +F   
Sbjct:    68 AHDVAVLALRGRSACLNFSDSAWRLPVPASTDPDTIRRTAAEAAEMFR-----PPEFSTG 122

Query:   143 -GLLPEKNVFYMDEEAVFDMPGLLVNMAE 170
               +LP  + F   +E V    G+++ +AE
Sbjct:   123 ITVLPSASEFDTSDEGV---AGMMMRLAE 148

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010371 "regulation of gibberellin biosynthetic process" evidence=IMP

GO:0016049 "cell growth" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2044845 HRD "HARDY" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 57/171 (33%), Positives = 78/171 (45%)

Query:    41 RHPIFRGVRMR-NNNKWVCELREPNKKSRIWLGTYPTPEMXXXXXXXXXXXXXGKSTCLN 99
             RHP++RGVR R N+NKWV E+REP K +RIWLGT+ TPEM             G    LN
Sbjct:    11 RHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELN 70

Query:   100 FADSAWRLPVPXXXXXXXXXXXXXXXXXXFRLSHDD----EDQFEENGLLPEKNVF---- 151
             F +S   LP P                  F  + D      +  + +G+    + +    
Sbjct:    71 FPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMANNNSQTSGVACMNSSYDNTN 130

Query:   152 ---YMDEEAVFDMPGLLVNMAEGXXXXXXXXXI-GCEYXXXXXTKWNDYIW 198
                +MDE+ VFDMP +L+NMAEG         +    Y        +DY+W
Sbjct:   131 MNGFMDEDLVFDMPNVLMNMAEGMLLSPPRPTVFDAAYDADGFPGGDDYLW 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2195062 AT1G12630 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
 Identities = 31/70 (44%), Positives = 39/70 (55%)

Query:    41 RHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMXXXXXXXXXXXXXGKSTCLNF 100
             + P++RG+R R+  KWV E+REP K +RIWLGTYP  EM             G+   LNF
Sbjct:    15 KDPVYRGIRCRSG-KWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNF 73

Query:   101 ADSAWRLPVP 110
               S    PVP
Sbjct:    74 PGSVGSYPVP 83

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 9.2e-18, Sum P(2) = 9.2e-18
 Identities = 37/70 (52%), Positives = 42/70 (60%)

Query:    41 RHPIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMXXXXXXXXXXXXXGKSTCLNF 100
             +HP +RGVRMR+  KWV E+REP KKSRIWLGTYPT EM             G +  LNF
Sbjct:    96 KHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNF 155

Query:   101 ADSAWRLPVP 110
                A  LP P
Sbjct:   156 PKLAGELPRP 165

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2103301 AT3G60490 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
 Identities = 42/96 (43%), Positives = 52/96 (54%)

Query:    16 TTKFNYRLATSSPKKRAGRRVFRETRHPI-FRGVRMRNNNKWVCELREPNKKSRIWLGTY 74
             T+K +      S  KR    V  + ++P  +RGVRMR+  KWV E+REP KKSRIWLGTY
Sbjct:    41 TSKRSLVQDNDSGGKRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTY 100

Query:    75 PTPEMXXXXXXXXXXXXXGKSTCLNFADSAWRLPVP 110
             PT EM             G S  LNF + +  LP P
Sbjct:   101 PTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRP 136

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S9Z5	DRE1F_ORYSJ	No assigned EC number	0.5182	0.76	0.6940	yes	no
Q9SYS6	DRE1C_ARATH	No assigned EC number	0.5759	0.88	0.8148	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: CBF3 SubName- Full=C-repeat binding facor 3; (231 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-27
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	5e-26
pfam00847	53	pfam00847, AP2, AP2 domain	3e-11

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 98.1 bits (245), Expect = 2e-27
 Identities = 36/61 (59%), Positives = 42/61 (68%)

Query: 43  PIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNFAD 102
             +RGVR R   KWV E+R+P+   RIWLGT+ T E AARA+D AAL LRG S  LNF D
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 103 S 103
           S
Sbjct: 61  S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 94.6 bits (236), Expect = 5e-26
 Identities = 32/57 (56%), Positives = 40/57 (70%)

Query: 44  IFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNF 100
            +RGVR R   KWV E+R+P+K  R+WLGT+ T E AARA+D AA   RG+S  LNF
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNF 57

Length = 64

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 55.7 bits (135), Expect = 3e-11
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 43 PIFRGVRMR-NNNKWVCELREPN--KKSRIWLGTYPTPEMAARAHDVAALALRG 93
            ++GVR      +WV E+R+P   KK R  LGT+ T E AARA   A L LRG
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
PHA00280	121	putative NHN endonuclease	99.47
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.11

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=2.1e-21  Score=134.69  Aligned_cols=61  Identities=59%  Similarity=0.925  Sum_probs=57.6

Q ss_pred             CceeEEEECCCCeEEEEEeecCCCcEEeecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 029015           43 PIFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNFADS  103 (200)
Q Consensus        43 s~yrGVr~r~~GkW~AeIr~p~~~kri~LGtf~t~eeAArAyD~Aa~~l~G~~a~lNFp~s  103 (200)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+|||++|||.|++.++|..+.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6799998888899999999966699999999999999999999999999999999999985

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=9.3e-21  Score=133.02  Aligned_cols=63  Identities=52%  Similarity=0.895  Sum_probs=59.8

Q ss_pred             ceeEEEECCCCeEEEEEeecCCCcEEeecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 029015           44 IFRGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNFADSAWR  106 (200)
Q Consensus        44 ~yrGVr~r~~GkW~AeIr~p~~~kri~LGtf~t~eeAArAyD~Aa~~l~G~~a~lNFp~s~~~  106 (200)
                      +|+||+++++|||+|+|++|.+++++|||+|+|+||||+|||.|++.++|..+.+|||.+.|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            499998888899999999999999999999999999999999999999999999999998764

>PHA00280 putative NHN endonuclease

Probab=99.47  E-value=9.9e-14  Score=109.51  Aligned_cols=69  Identities=12%  Similarity=0.140  Sum_probs=58.4

Q ss_pred             CCccccCCCCCCCCCCCCceeEEE-ECCCCeEEEEEeecCCCcEEeecCCCCHHHHHHHHHHHHHhhcCCCCC
Q 029015           26 SSPKKRAGRRVFRETRHPIFRGVR-MRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRGKSTC   97 (200)
Q Consensus        26 ~~~k~~~~r~k~~~~~~s~yrGVr-~r~~GkW~AeIr~p~~~kri~LGtf~t~eeAArAyD~Aa~~l~G~~a~   97 (200)
                      ..+.....+++.+.+++|+|+||. ....|||+|+|+.  ++|+++||.|+|+|+|+.||+ ++.+++|.+|+
T Consensus        50 ~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         50 ALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             cCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            344455555666778999999995 5567999999999  999999999999999999997 77889999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.11  E-value=1.8e-10  Score=77.87  Aligned_cols=52  Identities=25%  Similarity=0.428  Sum_probs=44.6

Q ss_pred             CceeEEEE-CCCCeEEEEEeecCC---CcEEeecCCCCHHHHHHHHHHHHHhhcCC
Q 029015           43 PIFRGVRM-RNNNKWVCELREPNK---KSRIWLGTYPTPEMAARAHDVAALALRGK   94 (200)
Q Consensus        43 s~yrGVr~-r~~GkW~AeIr~p~~---~kri~LGtf~t~eeAArAyD~Aa~~l~G~   94 (200)
                      |+|+||++ +..++|+|+|+++..   +++++||.|+++++|++|++.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            67999965 457999999999532   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		7e-04

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 45  FRGVRMRNNNKWVCELREPNKK-SRIWLGTYPTPEMXXXXXXXXXXXXXGKSTCLNF 100
           +RGVR R   K+  E+R+P K  +R+WLGT+ T E              G    LNF
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
1gcc_A	63	Ethylene responsive element binding factor 1; tran	4e-20

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 78.9 bits (195), Expect = 4e-20
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 45  FRGVRMRNNNKWVCELREPNKK-SRIWLGTYPTPEMAARAHDVAALALRGKSTCLNF 100
           +RGVR R   K+  E+R+P K  +R+WLGT+ T E AA A+D AA  +RG    LNF
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	86.55
3jtz_A	88	Integrase; four stranded beta-sheet, DNA binding p	80.74
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	80.64

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=5.6e-26  Score=159.21  Aligned_cols=60  Identities=47%  Similarity=0.736  Sum_probs=57.1

Q ss_pred             ceeEEEECCCCeEEEEEeecCC-CcEEeecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 029015           44 IFRGVRMRNNNKWVCELREPNK-KSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNFADS  103 (200)
Q Consensus        44 ~yrGVr~r~~GkW~AeIr~p~~-~kri~LGtf~t~eeAArAyD~Aa~~l~G~~a~lNFp~s  103 (200)
                      +||||+++++|||+|+|++|.+ +++||||||+|+||||+|||.|+++++|..+++|||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            4999998889999999999975 79999999999999999999999999999999999986

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=86.55  E-value=0.43  Score=34.08  Aligned_cols=28  Identities=18%  Similarity=0.254  Sum_probs=21.1

Q ss_pred             CCCCceeEE-EECCCCeEEEEEeecCCCcEE
Q 029015           40 TRHPIFRGV-RMRNNNKWVCELREPNKKSRI   69 (200)
Q Consensus        40 ~~~s~yrGV-r~r~~GkW~AeIr~p~~~kri   69 (200)
                      +..|+|.|| +..+.+.|+|.-.+  ++++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            467899999 55567999999988  55543

>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A

Probab=80.74  E-value=3.6  Score=29.40  Aligned_cols=44  Identities=27%  Similarity=0.437  Sum_probs=31.7

Q ss_pred             EEECCCC--eEEEEEeecCCCcEEeecCCC--CHHHHHHHHHHHHHhh
Q 029015           48 VRMRNNN--KWVCELREPNKKSRIWLGTYP--TPEMAARAHDVAALAL   91 (200)
Q Consensus        48 Vr~r~~G--kW~AeIr~p~~~kri~LGtf~--t~eeAArAyD~Aa~~l   91 (200)
                      ++-++.|  .|+-+.+..++.+++-||.|+  |.++|....+.+...+
T Consensus        28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l   75 (88)
T 3jtz_A           28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML   75 (88)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            4445544  499998886667789999998  5788877776655544

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=80.64  E-value=2.2  Score=35.57  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=30.4

Q ss_pred             eEEEECCCCeEEEEEeecCCCcEEeecCCCCHHHHHHHHHHHHHhh
Q 029015           46 RGVRMRNNNKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALAL   91 (200)
Q Consensus        46 rGVr~r~~GkW~AeIr~p~~~kri~LGtf~t~eeAArAyD~Aa~~l   91 (200)
                      .||++++.|.|..++..  .|+++.+|.  |..+|..+...+...+
T Consensus        14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            35777777899877654  788899996  8888877766544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	8e-26

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 92.5 bits (230), Expect = 8e-26
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 45  FRGVRMRNNNKWVCELREPNKK-SRIWLGTYPTPEMAARAHDVAALALRGKSTCLNF 100
           +RGVR R   K+  E+R+P K  +R+WLGT+ T E AA A+D AA  +RG    LNF
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=8.2e-26  Score=156.97  Aligned_cols=60  Identities=45%  Similarity=0.722  Sum_probs=56.0

Q ss_pred             ceeEEEECCCCeEEEEEeecC-CCcEEeecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 029015           44 IFRGVRMRNNNKWVCELREPN-KKSRIWLGTYPTPEMAARAHDVAALALRGKSTCLNFADS  103 (200)
Q Consensus        44 ~yrGVr~r~~GkW~AeIr~p~-~~kri~LGtf~t~eeAArAyD~Aa~~l~G~~a~lNFp~s  103 (200)
                      +||||++|++|||+|+|++|. ++++||||||+|+||||+|||+|++.++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            399999888999999999986 568999999999999999999999999999999999964