Citrus Sinensis ID: 029035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MAEEVELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccEEEEccccccEEEEEEEcccccccEEccccccEEEEEEEEEEEccccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHccEEEEccccccEEEEEEccccccccEEccccccEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccHHHHccccccHHHHHHccccc
Coil and Loop (DISEMBL)
maeevelnpkqKKEIAKWFLLNSPAGEIQYVAKDLRLVLndnevydeavsesfpiynkshmiclqmpagagdVLVTSfgelgeneyldprtAQVAIVDHVKQVGAHYfeegnvqldakhecgdstlfqspddsaiSISNILRHHETEYLASLEVsysnlpdntfkdlrrklpvtrtlfpwhntsqfsLTREITKELGIGK
Flexible Loop (DISEMBL)
maeevelnpkqkKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPDNTFKDLRRKLPVtrtlfpwhntsqfsltreitkelgigk
Low Complexity Region (SEG)
MAEEVELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK
Disordered region (IsUnstruct)
**************IAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQ****SAISISNILRHHETEYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTR**********
Disordered Region (DISOPRED)
******LNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTR**********
Disordered Region (DISEMBL)
**********QKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK
Disordered Region (DISPRO)
******LNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKEL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEEVELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
O82631	308	F-actin-capping protein s	no	no	0.485	0.314	0.761	5e-44
A4FUA8	286	F-actin-capping protein s	yes	no	0.515	0.360	0.358	1e-12
P13127	286	F-actin-capping protein s	yes	no	0.515	0.360	0.367	2e-12
Q9W2N0	286	F-actin-capping protein s	yes	no	0.45	0.314	0.344	5e-12
Q4R959	286	F-actin-capping protein s	N/A	no	0.515	0.360	0.349	6e-12
P13022	281	F-actin-capping protein s	yes	no	0.435	0.309	0.393	1e-11
Q5NVM0	286	F-actin-capping protein s	yes	no	0.515	0.360	0.349	1e-11
P52907	286	F-actin-capping protein s	yes	no	0.515	0.360	0.349	1e-11
P28497	286	F-actin-capping protein s	no	no	0.515	0.360	0.339	1e-11
B2GUZ5	286	F-actin-capping protein s	yes	no	0.515	0.360	0.349	2e-11

>sp|O82631|CAPZA_ARATH F-actin-capping protein subunit alpha OS=Arabidopsis thaliana GN=At3g05520 PE=2 SV=2

 Score =  177 bits (448), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 83/109 (76%), Positives = 94/109 (86%)

Query: 92  AQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLAS 151
           +QV  +    QVGAHYFEEGNV+LDAK +  DST+FQS DD AI+I+NI+RHHETEYLAS
Sbjct: 200 SQVLDIKGKLQVGAHYFEEGNVELDAKKDFQDSTIFQSADDCAIAIANIIRHHETEYLAS 259

Query: 152 LEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK 200
           LEV+YS LPDNTFKDLRRKLPVTRTLFPW NT QFSLTRE+ KELG+GK
Sbjct: 260 LEVAYSKLPDNTFKDLRRKLPVTRTLFPWQNTLQFSLTREVEKELGLGK 308

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
Arabidopsis thaliana (taxid: 3702)

>sp|A4FUA8|CAZA1_BOVIN F-actin-capping protein subunit alpha-1 OS=Bos taurus GN=CAPZA1 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 87  LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
           + P TAQV     V ++  HY+E+GNVQL +  +  DS    +   +A     I+ H E 
Sbjct: 181 ITPPTAQVV---GVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEAQTAKEFIKIIEHAEN 237

Query: 147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
           EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct: 238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKVDWNKILSYKIGKEM 283

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.

Bos taurus (taxid: 9913)

>sp|P13127|CAZA1_CHICK F-actin-capping protein subunit alpha-1 OS=Gallus gallus GN=CAPZA1 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 3/106 (2%)

Query: 87  LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
           + P TAQVA V    ++  HY+E+GNVQL +  +  DS    S   +A     I+ + E 
Sbjct: 181 ITPPTAQVAAV---LKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAEN 237

Query: 147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
           EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct: 238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. CapZ may mediate the attachment of the barbed ends of actin filaments to the Z-line.

Gallus gallus (taxid: 9031)

>sp|Q9W2N0|CAPZA_DROME F-actin-capping protein subunit alpha OS=Drosophila melanogaster GN=cpa PE=2 SV=1

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 53/93 (56%)

Query: 100 VKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNL 159
           V +V  HY+E+GNVQL +  EC +S +  +    A  +  ++   E EY  ++  +Y  +
Sbjct: 191 VLKVQVHYYEDGNVQLVSSKECRESVVVSNEQQVAKEVIRLIEDAENEYQLAISENYQTM 250

Query: 160 PDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
            D TFK +RR+LP+TRT   W     +S+ +E+
Sbjct: 251 SDTTFKAMRRQLPITRTKIDWSKIVSYSIGKEL 283

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.

Drosophila melanogaster (taxid: 7227)

>sp|Q4R959|CAZA1_MACFA F-actin-capping protein subunit alpha-1 OS=Macaca fascicularis GN=CAPZA1 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 87  LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
           + P TAQV     V ++  HY+E+GNVQL +  +  DS    +   +A     I+ + E 
Sbjct: 181 ITPPTAQVV---RVLKIQVHYYEDGNVQLVSHKDVQDSLTVSNEAQTAKEFIKIIENAEN 237

Query: 147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
           EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct: 238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKVLSYKIGKEM 283

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.

Macaca fascicularis (taxid: 9541)

>sp|P13022|CAPZA_DICDI F-actin-capping protein subunit alpha OS=Dictyostelium discoideum GN=acpB PE=1 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 14  EIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDV 73
           +IA  FLLN+P  E   V  D+R +L    + + +   +F  YN S M+ +Q   G+   
Sbjct: 9   QIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGSA-- 66

Query: 74  LVTSFGELGENEYLDPRTAQVAIVDHVKQ 102
           L+T  GE+  NEYLDP+  QV   DH+KQ
Sbjct: 67  LITKEGEISNNEYLDPKNKQVITYDHIKQ 95

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5NVM0|CAZA1_PONAB F-actin-capping protein subunit alpha-1 OS=Pongo abelii GN=CAPZA1 PE=2 SV=3

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 87  LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
           + P TAQV     V ++  HY+E+GNVQL +  +  DS    +   +A     I+ + E 
Sbjct: 181 ITPPTAQVV---GVLKIQVHYYEDGNVQLVSHKDVQDSLTVSNEAQTAKEFIKIIENAEN 237

Query: 147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
           EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct: 238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.

Pongo abelii (taxid: 9601)

>sp|P52907|CAZA1_HUMAN F-actin-capping protein subunit alpha-1 OS=Homo sapiens GN=CAPZA1 PE=1 SV=3

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 87  LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
           + P TAQV     V ++  HY+E+GNVQL +  +  DS    +   +A     I+ + E 
Sbjct: 181 ITPPTAQVV---GVLKIQVHYYEDGNVQLVSHKDVQDSLTVSNEAQTAKEFIKIIENAEN 237

Query: 147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
           EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct: 238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.

Homo sapiens (taxid: 9606)

>sp|P28497|CAZA2_CHICK F-actin-capping protein subunit alpha-2 OS=Gallus gallus GN=CAPZA2 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 87  LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
           + P T QVA    + ++  HY+E+GNVQL +  +  DS    +   +A     I+   E 
Sbjct: 181 ISPSTTQVA---GILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEAQTAKEFIKIVEAAEN 237

Query: 147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
           EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct: 238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. CapZ may mediate the attachment of the barbed ends of actin filaments to the Z-line.

Gallus gallus (taxid: 9031)

>sp|B2GUZ5|CAZA1_RAT F-actin-capping protein subunit alpha-1 OS=Rattus norvegicus GN=Capza1 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 87  LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
           + P TAQV     V ++  HY+E+GNVQL +  +  DS    +   +A     I+   E 
Sbjct: 181 ITPPTAQVV---GVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEVQTAKEFIKIIESAEN 237

Query: 147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
           EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct: 238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
414591165	252	TPA: hypothetical protein ZEAMMB73_87093	0.97	0.769	0.508	4e-62
222636893	210	hypothetical protein OsJ_23957 [Oryza sa	0.85	0.809	0.523	2e-54
296089696	296	unnamed protein product [Vitis vinifera]	0.435	0.293	0.858	6e-46
147786912	307	hypothetical protein VITISV_026036 [Viti	0.495	0.322	0.858	6e-46
359487634	370	PREDICTED: F-actin-capping protein subun	0.435	0.235	0.858	9e-46
357511841	305	F-actin-capping protein subunit alpha [M	0.435	0.285	0.858	2e-45
357511843	192	F-actin-capping protein subunit alpha [M	0.495	0.515	0.858	3e-45
356572980	307	PREDICTED: F-actin-capping protein subun	0.435	0.283	0.848	4e-45
449454061	303	PREDICTED: F-actin-capping protein subun	0.495	0.326	0.838	9e-45
255638197	305	unknown [Glycine max]	0.435	0.285	0.838	1e-44

>gi|414591165|tpg|DAA41736.1| TPA: hypothetical protein ZEAMMB73_870930 [Zea mays]

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 123/242 (50%), Positives = 159/242 (65%), Gaps = 48/242 (19%)

Query: 7   LNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQM 66
           L+  QK+EIA WFL N+PAGEI YVAKD+R +L D+ VY+ A +E+FP YNK+ ++ L++
Sbjct: 11  LSDSQKREIAVWFLSNAPAGEIHYVAKDVRALLGDDAVYEAAAAEAFPEYNKARLVSLEL 70

Query: 67  PAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQ------------------------ 102
           P  +GD+++T++GE+ +N YLDPRTAQVA +DH+KQ                        
Sbjct: 71  PDRSGDIIITAYGEIDKNNYLDPRTAQVASIDHMKQTCTKLRPAEDEELPSAYIEEFSNG 130

Query: 103 ------------------------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISIS 138
                                   V AHYFEEGNVQLD   +  DST+ QSPDD A+SI+
Sbjct: 131 SWRSIWTMEFNYELQFVDIKGNIQVDAHYFEEGNVQLDTNIDRKDSTIMQSPDDCAVSIT 190

Query: 139 NILRHHETEYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGI 198
           +I+RHHE+EYL+SLE SY NL D TFKDLRRKLPVTRTLFPWHNT   SLTR++ K+L +
Sbjct: 191 SIIRHHESEYLSSLEESYLNLSDATFKDLRRKLPVTRTLFPWHNTLAVSLTRDLAKQLAL 250

Query: 199 GK 200
           GK
Sbjct: 251 GK 252

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222636893|gb|EEE67025.1| hypothetical protein OsJ_23957 [Oryza sativa Japonica Group]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/210 (52%), Positives = 142/210 (67%), Gaps = 40/210 (19%)

Query: 31  VAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDPR 90
           ++ D+R +L D  VY+ A +E+FP +NK+H++ L++P  +GD+++T++GEL +N YLDPR
Sbjct: 1   MSDDVRALLGDEAVYEAAAAEAFPEHNKAHLVALELPDRSGDIIITTYGELDKNNYLDPR 60

Query: 91  TAQVAIVDHVKQ----------------------------------------VGAHYFEE 110
           TAQVA VDH+KQ                                        VGAHYFEE
Sbjct: 61  TAQVATVDHIKQKCTKLRPAADEELPSAYIEDFRSALDVELSKYVGEAYPKGVGAHYFEE 120

Query: 111 GNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPDNTFKDLRRK 170
           GNVQLD   +C DST+ QSP++ A+SI+NI+RHHE+EYL+SLE SY NL D TFKDLRRK
Sbjct: 121 GNVQLDTNIDCKDSTILQSPEECAVSITNIIRHHESEYLSSLEESYMNLSDATFKDLRRK 180

Query: 171 LPVTRTLFPWHNTSQFSLTREITKELGIGK 200
           LPVTRTLFPWHNT   SLTR++TKEL IGK
Sbjct: 181 LPVTRTLFPWHNTLALSLTRDLTKELAIGK 210

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089696|emb|CBI39515.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/99 (85%), Positives = 93/99 (93%)

Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
           QVGAHYFEEGNVQLDAKHEC DST+FQSP+D AISI+NI+RHHETEYL SL+ SYSNLPD
Sbjct: 198 QVGAHYFEEGNVQLDAKHECKDSTIFQSPEDCAISIANIIRHHETEYLTSLQASYSNLPD 257

Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK 200
            TFKDLRRKLPVTRTLFPWHNT QFSL+R+I+KELGIGK
Sbjct: 258 TTFKDLRRKLPVTRTLFPWHNTMQFSLSRDISKELGIGK 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147786912|emb|CAN68894.1| hypothetical protein VITISV_026036 [Vitis vinifera]

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/99 (85%), Positives = 93/99 (93%)

Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
           QVGAHYFEEGNVQLDAKHEC DST+FQSP+D AISI+NI+RHHETEYL SL+ SYSNLPD
Sbjct: 209 QVGAHYFEEGNVQLDAKHECKDSTIFQSPEDCAISIANIIRHHETEYLTSLQASYSNLPD 268

Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK 200
            TFKDLRRKLPVTRTLFPWHNT QFSL+R+I+KELGIGK
Sbjct: 269 TTFKDLRRKLPVTRTLFPWHNTMQFSLSRDISKELGIGK 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487634|ref|XP_002283779.2| PREDICTED: F-actin-capping protein subunit alpha-like [Vitis vinifera]

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 85/99 (85%), Positives = 93/99 (93%)

Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
           QVGAHYFEEGNVQLDAKHEC DST+FQSP+D AISI+NI+RHHETEYL SL+ SYSNLPD
Sbjct: 209 QVGAHYFEEGNVQLDAKHECKDSTIFQSPEDCAISIANIIRHHETEYLTSLQASYSNLPD 268

Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK 200
            TFKDLRRKLPVTRTLFPWHNT QFSL+R+I+KELGIGK
Sbjct: 269 TTFKDLRRKLPVTRTLFPWHNTMQFSLSRDISKELGIGK 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511841|ref|XP_003626209.1| F-actin-capping protein subunit alpha [Medicago truncatula] gi|355501224|gb|AES82427.1| F-actin-capping protein subunit alpha [Medicago truncatula] gi|366985123|gb|AEX09386.1| F-actin capping protein alpha subunit [Glycine max] gi|388492582|gb|AFK34357.1| unknown [Medicago truncatula]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/99 (85%), Positives = 94/99 (94%)

Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
           QVGAHYFEEGNVQLDAKHEC D+TLFQ+PDD AI+IS+I+RHHETEYLASLE SY NLPD
Sbjct: 207 QVGAHYFEEGNVQLDAKHECKDATLFQAPDDCAIAISSIIRHHETEYLASLEASYLNLPD 266

Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK 200
           +TFKDLRRKLPVTRTLFPWHNT QFSL+R+I+KELGIGK
Sbjct: 267 STFKDLRRKLPVTRTLFPWHNTLQFSLSRDISKELGIGK 305

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511843|ref|XP_003626210.1| F-actin-capping protein subunit alpha [Medicago truncatula] gi|355501225|gb|AES82428.1| F-actin-capping protein subunit alpha [Medicago truncatula]

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/99 (85%), Positives = 94/99 (94%)

Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
           QVGAHYFEEGNVQLDAKHEC D+TLFQ+PDD AI+IS+I+RHHETEYLASLE SY NLPD
Sbjct: 94  QVGAHYFEEGNVQLDAKHECKDATLFQAPDDCAIAISSIIRHHETEYLASLEASYLNLPD 153

Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK 200
           +TFKDLRRKLPVTRTLFPWHNT QFSL+R+I+KELGIGK
Sbjct: 154 STFKDLRRKLPVTRTLFPWHNTLQFSLSRDISKELGIGK 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572980|ref|XP_003554643.1| PREDICTED: F-actin-capping protein subunit alpha-like [Glycine max]

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/99 (84%), Positives = 94/99 (94%)

Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
           QVGAHYFEEGNVQLDAKHEC D+TLFQ+P+D A++I++I+RHHETEYLASLE SY NLPD
Sbjct: 209 QVGAHYFEEGNVQLDAKHECKDATLFQAPEDCALAITSIIRHHETEYLASLEASYLNLPD 268

Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK 200
           +TFKDLRRKLPVTRTLFPWHNT QFSLTR+ITKELGIGK
Sbjct: 269 STFKDLRRKLPVTRTLFPWHNTLQFSLTRDITKELGIGK 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454061|ref|XP_004144774.1| PREDICTED: F-actin-capping protein subunit alpha-like [Cucumis sativus] gi|449490876|ref|XP_004158734.1| PREDICTED: F-actin-capping protein subunit alpha-like [Cucumis sativus]

 Score =  185 bits (469), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 90/99 (90%)

Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
           QVGAHYFEEGNVQLDAKHEC DST+ Q+P+D A +I+NI+RHHE EYL SLE SYSNLPD
Sbjct: 205 QVGAHYFEEGNVQLDAKHECNDSTVLQAPEDCAAAIANIIRHHEAEYLVSLETSYSNLPD 264

Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK 200
            TFKDLRRKLPVTRTLFPWHNTSQFSLTR+I KELGIGK
Sbjct: 265 TTFKDLRRKLPVTRTLFPWHNTSQFSLTRDIAKELGIGK 303

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638197|gb|ACU19412.1| unknown [Glycine max]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 94/99 (94%)

Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
           QVGAHYFEEGNVQLDAKHEC D+TLFQ+P+D A++I++I+RHHETEYLASLE SY NLPD
Sbjct: 207 QVGAHYFEEGNVQLDAKHECKDATLFQAPEDCALAITSIIRHHETEYLASLEASYLNLPD 266

Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK 200
           +TFKDLRRKLPVTRTLFPWHNT QFSLTR+I+KELGIGK
Sbjct: 267 STFKDLRRKLPVTRTLFPWHNTLQFSLTRDISKELGIGK 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2079757	382	CPA "capping protein A" [Arabi	0.545	0.285	0.761	4.5e-82
UNIPROTKB|P13127	286	CAPZA1 "F-actin-capping protei	0.515	0.360	0.386	9e-28
UNIPROTKB|E1BXA2	287	CAPZA1 "F-actin-capping protei	0.515	0.358	0.386	9.5e-28
UNIPROTKB|F1P7P3	291	CAPZA1 "Uncharacterized protei	0.515	0.353	0.358	4.9e-27
DICTYBASE|DDB_G0272104	281	acpB "F-actin-capping protein	0.505	0.359	0.365	4.9e-27
UNIPROTKB|P28497	286	CAPZA2 "F-actin-capping protei	0.515	0.360	0.339	5.3e-27
RGD|1587438	286	Capza1 "capping protein (actin	0.515	0.360	0.349	1.1e-26
UNIPROTKB|A0M8V0	286	CAPZA2 "F-actin-capping protei	0.515	0.360	0.330	1.5e-26
UNIPROTKB|P47755	286	CAPZA2 "F-actin-capping protei	0.515	0.360	0.330	1.5e-26
UNIPROTKB|Q29221	286	CAPZA2 "F-actin-capping protei	0.515	0.360	0.330	1.5e-26

TAIR|locus:2079757 CPA "capping protein A" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
 Identities = 83/109 (76%), Positives = 94/109 (86%)

Query:    92 AQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLAS 151
             +QV  +    QVGAHYFEEGNV+LDAK +  DST+FQS DD AI+I+NI+RHHETEYLAS
Sbjct:   200 SQVLDIKGKLQVGAHYFEEGNVELDAKKDFQDSTIFQSADDCAIAIANIIRHHETEYLAS 259

Query:   152 LEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGIGK 200
             LEV+YS LPDNTFKDLRRKLPVTRTLFPW NT QFSLTRE+ KELG+GK
Sbjct:   260 LEVAYSKLPDNTFKDLRRKLPVTRTLFPWQNTLQFSLTREVEKELGLGK 308

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008290 "F-actin capping protein complex" evidence=IEA;ISS

GO:0030036 "actin cytoskeleton organization" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

GO:0007015 "actin filament organization" evidence=IMP

GO:0051693 "actin filament capping" evidence=IMP

UNIPROTKB|P13127 CAPZA1 "F-actin-capping protein subunit alpha-1" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 9.0e-28, Sum P(2) = 9.0e-28
 Identities = 41/106 (38%), Positives = 60/106 (56%)

Query:    87 LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
             + P TAQVA V  + QV  HY+E+GNVQL +  +  DS    S   +A     I+ + E 
Sbjct:   181 ITPPTAQVAAVLKI-QV--HYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAEN 237

Query:   147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
             EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct:   238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283

GO:0008290 "F-actin capping protein complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0051693 "actin filament capping" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0071203 "WASH complex" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|E1BXA2 CAPZA1 "F-actin-capping protein subunit alpha-1" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 9.5e-28, Sum P(2) = 9.5e-28
 Identities = 41/106 (38%), Positives = 60/106 (56%)

Query:    87 LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
             + P TAQVA V  + QV  HY+E+GNVQL +  +  DS    S   +A     I+ + E 
Sbjct:   182 ITPPTAQVAAVLKI-QV--HYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAEN 238

Query:   147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
             EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct:   239 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 284

GO:0008290 "F-actin capping protein complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0071203 "WASH complex" evidence=IEA

UNIPROTKB|F1P7P3 CAPZA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
 Identities = 38/106 (35%), Positives = 58/106 (54%)

Query:    87 LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
             + P TAQV     V ++  HY+E+GNVQL +  +  DS    +   +A     I+ H E 
Sbjct:   186 ITPPTAQVV---GVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEVQTAKEFIKIIEHAEN 242

Query:   147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
             EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct:   243 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 288

GO:0071203 "WASH complex" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA

DICTYBASE|DDB_G0272104 acpB "F-actin-capping protein subunit alpha" [Dictyostelium discoideum (taxid:44689)]

 Score = 170 (64.9 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
 Identities = 38/104 (36%), Positives = 54/104 (51%)

Query:    14 EIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDV 73
             +IA  FLLN+P  E   V  D+R +L    + + +   +F  YN S M+ +Q     G  
Sbjct:     9 QIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQ--TSKGSA 66

Query:    74 LVTSFGELGENEYLDPRTAQVAIVDHVKQ-VGAHYFEEGNVQLD 116
             L+T  GE+  NEYLDP+  QV   DH+KQ V       G ++ D
Sbjct:    67 LITKEGEISNNEYLDPKNKQVITYDHIKQEVTGERSASGEIEQD 110

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0051693 "actin filament capping" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P28497 CAPZA2 "F-actin-capping protein subunit alpha-2" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 5.3e-27, Sum P(2) = 5.3e-27
 Identities = 36/106 (33%), Positives = 57/106 (53%)

Query:    87 LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
             + P T QVA    + ++  HY+E+GNVQL +  +  DS    +   +A     I+   E 
Sbjct:   181 ISPSTTQVA---GILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEAQTAKEFIKIVEAAEN 237

Query:   147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
             EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct:   238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283

GO:0008290 "F-actin capping protein complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0051693 "actin filament capping" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

RGD|1587438 Capza1 "capping protein (actin filament) muscle Z-line, alpha 1" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query:    87 LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
             + P TAQV     V ++  HY+E+GNVQL +  +  DS    +   +A     I+   E 
Sbjct:   181 ITPPTAQVV---GVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEVQTAKEFIKIIESAEN 237

Query:   147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
             EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct:   238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283

GO:0003779 "actin binding" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IEA;ISO

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA;ISO

GO:0051016 "barbed-end actin filament capping" evidence=ISO

GO:0051693 "actin filament capping" evidence=IEA

GO:0071203 "WASH complex" evidence=ISO;ISS

GO:0051015 "actin filament binding" evidence=ISO

UNIPROTKB|A0M8V0 CAPZA2 "F-actin-capping protein subunit alpha-2" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 35/106 (33%), Positives = 56/106 (52%)

Query:    87 LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
             + P T QV     + ++  HY+E+GNVQL +  +  DS    +   +A     I+   E 
Sbjct:   181 ITPSTTQVV---GILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAEN 237

Query:   147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
             EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct:   238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0051693 "actin filament capping" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA

UNIPROTKB|P47755 CAPZA2 "F-actin-capping protein subunit alpha-2" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 35/106 (33%), Positives = 56/106 (52%)

Query:    87 LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
             + P T QV     + ++  HY+E+GNVQL +  +  DS    +   +A     I+   E 
Sbjct:   181 ITPSTTQVV---GILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAEN 237

Query:   147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
             EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct:   238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283

GO:0008290 "F-actin capping protein complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0051693 "actin filament capping" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0006461 "protein complex assembly" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q29221 CAPZA2 "F-actin-capping protein subunit alpha-2" [Sus scrofa (taxid:9823)]

 Score = 166 (63.5 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 35/106 (33%), Positives = 56/106 (52%)

Query:    87 LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
             + P T QV     + ++  HY+E+GNVQL +  +  DS    +   +A     I+   E 
Sbjct:   181 ITPSTTQVV---GILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAEN 237

Query:   147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
             EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct:   238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283

GO:0051693 "actin filament capping" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	OsJ_23957	Putative uncharacterized protein (210 aa)
		(Oryza sativa Indica)
Predicted Functional Partners:
	BGIOSIBCE011343	Putative uncharacterized protein (301 aa)				•	•	•	•		0.757

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam01267	269	pfam01267, F-actin_cap_A, F-actin capping protein	2e-30
pfam01267	269	pfam01267, F-actin_cap_A, F-actin capping protein	6e-27

>gnl|CDD|216401 pfam01267, F-actin_cap_A, F-actin capping protein alpha subunit

 Score =  111 bits (281), Expect = 2e-30
 Identities = 34/90 (37%), Positives = 52/90 (57%)

Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
           +V  HY+E+GNVQL +  +  ++    + D +A SI   +R  E EY A+L  +++ L D
Sbjct: 180 KVDVHYYEDGNVQLKSSKDFEETVSVSNDDATASSIVKAIREAENEYQAALNENFNTLND 239

Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSLTRE 191
            TFK LRR+LPVTR    W     + L ++
Sbjct: 240 TTFKALRRQLPVTRQKINWGKIGNYRLGKD 269

Length = 269

>gnl|CDD|216401 pfam01267, F-actin_cap_A, F-actin capping protein alpha subunit

 Score =  102 bits (257), Expect = 6e-27
 Identities = 31/92 (33%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 11  QKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGA 70
           +K EI   F+ N+P GE+  V  DLR +L D+ +    ++E+   YN+  ++ +++P G+
Sbjct: 1   EKIEIISSFIKNAPPGELNDVVADLRALLGDDPLIKSTIAEALEQYNEEQLVPVKLP-GS 59

Query: 71  GDVLVTSFGELGENEYLDPRTAQVAIVDHVKQ 102
             V+++ + +LG N Y DP + +   VDH+KQ
Sbjct: 60  EKVIISEYNKLGGNRYFDPVSKKSFTVDHLKQ 91

Length = 269

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
KOG0836	282	consensus F-actin capping protein, alpha subunit [	100.0
PF01267	271	F-actin_cap_A: F-actin capping protein alpha subun	100.0
PF01115	242	F_actin_cap_B: F-actin capping protein, beta subun	91.17

>KOG0836 consensus F-actin capping protein, alpha subunit [Cytoskeleton]

Probab=100.00  E-value=6.1e-75  Score=501.86  Aligned_cols=190  Identities=36%  Similarity=0.650  Sum_probs=186.8

Q ss_pred             ccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEcCCCCCeEEEccccccCCC
Q 029035            5 VELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGEN   84 (200)
Q Consensus         5 ~~~s~~ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~~g~~~~viis~~n~l~~~   84 (200)
                      .+||+++|++||++||++||||||++|++|||.|+.+|.++++++.+||++||++||+||+++|+.++||||+||+++++
T Consensus         2 ~~lS~~~k~rii~kfi~~APPGEfneVf~Dlr~ll~~d~l~~e~~~~A~~qYn~~~~vpv~i~g~~~~viIS~~n~lg~~   81 (282)
T KOG0836|consen    2 SELSDAEKVRIISKFILHAPPGEFNEVFNDLRLLLSNDELLKEAAHEAFAQYNVDQMVPVEIDGGANQVIISEYNDLGNN   81 (282)
T ss_pred             CcccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcchhHHHHHHHHHHHHhchhcceeEecCCCCCceEEecccccCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCeEEEEecccc--------------------------------------------------------------
Q 029035           85 EYLDPRTAQVAIVDHVKQ--------------------------------------------------------------  102 (200)
Q Consensus        85 ~y~Dp~~k~~f~~Dhl~~--------------------------------------------------------------  102 (200)
                      |||||+++++|+|||+++                                                              
T Consensus        82 rf~Dp~~k~sFk~dhl~kea~d~qp~~~~~~~~E~~r~~l~~~l~~y~~~hy~~~~t~~vkk~dg~~~~l~icIesh~y~  161 (282)
T KOG0836|consen   82 RFLDPVNKKSFKYDHLRKEAEDVQPYEAEINIIEIWRYALDAQLKKYVSDHYPKGVTFVVKKSDGEQETLTICIESHQYQ  161 (282)
T ss_pred             eecchhhceeeeHHHHHHHhccCCCcchhhhhhHHHHHHHHHHHHHHHHhccCCCceEEEeccCCcceEEEEEEeecccC
Confidence            999999999999999997                                                              


Q ss_pred             ----------------------------eeeEEEeeceEEEeecccccccccccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 029035          103 ----------------------------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEV  154 (200)
Q Consensus       103 ----------------------------v~vHYyEdGNVqL~s~k~~~~s~~~~~~~~~a~~ivk~I~~~E~~~q~~L~e  154 (200)
                                                  |||||||||||||.++|++.+|+.+++..+.|++|+++|+++||+||++|++
T Consensus       162 pkNfwNG~WRS~w~~~v~~~~~l~G~i~vqvHYyEdGNV~l~s~Kd~qds~~vsn~~q~a~e~~~iI~~~Eneyq~ai~e  241 (282)
T KOG0836|consen  162 PKNFWNGRWRSEWNYDVQPTTELKGRIKVQVHYYEDGNVQLVSSKDIQDSLTVSNEVQTAKEFIKIIEEAENEYQAAISE  241 (282)
T ss_pred             cccccCCceeeeeeeccCchheeeeEEEEEEEEEecCcEEEEecCcchhhheeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                        9999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCChhhhhhhhccCCCCCCcccCCccccchhhHHHhh
Q 029035          155 SYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITK  194 (200)
Q Consensus       155 ~~~~Lse~~FK~LRR~LPvTRsKi~W~ki~~yrlg~d~~~  194 (200)
                      +|++|||+|||+||||||||||||||+||++||||++|..
T Consensus       242 ~yq~lsD~tFKaLRRqLPVTRtkIdW~kilsy~igke~~~  281 (282)
T KOG0836|consen  242 NYQTLSDTTFKALRRQLPVTRTKIDWNKILSYRIGKEMQN  281 (282)
T ss_pred             HHHhcChhHHHHHHhhCCceeeeccHHHhhhHHHHHHhcc
Confidence            9999999999999999999999999999999999999865

>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex

Probab=100.00  E-value=3e-73  Score=498.42  Aligned_cols=181  Identities=38%  Similarity=0.706  Sum_probs=161.4

Q ss_pred             hHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEcCCCCCeEEEccccccCCCeeecCC
Q 029035           11 QKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDPR   90 (200)
Q Consensus        11 ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~~g~~~~viis~~n~l~~~~y~Dp~   90 (200)
                      ||.+||++||++||||||++|++|||.|++||.++++.+++||++||++||+||++||.+++||||+||+++++||+||+
T Consensus         1 ek~~ii~~fl~~aPPGE~~~V~~Dlr~l~~dd~~~~~~i~~a~~~yn~~q~~~v~~~~~~~~viis~~n~~~~~ry~Dp~   80 (271)
T PF01267_consen    1 EKVEIISSFLLQAPPGEFNEVFNDLRTLLGDDSLLKEGIAEAFEQYNEEQFIPVKLPGSDHKVIISKYNKLGGNRYFDPR   80 (271)
T ss_dssp             HHHHHHHHHHHT--TT-HHHHHHHHHHHHT-HHHHHHHSHHHHHHHHHHTTEEE--TTSSS-EEE-GGGBESTTEEEETT
T ss_pred             CHHHHHHHHHHcCCCccHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHCcEEEEeCCCCcceEEecccccCCCeEEEec
Confidence            68999999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             CCeEEEEecccc--------------------------------------------------------------------
Q 029035           91 TAQVAIVDHVKQ--------------------------------------------------------------------  102 (200)
Q Consensus        91 ~k~~f~~Dhl~~--------------------------------------------------------------------  102 (200)
                      ++++|.|||+++                                                                    
T Consensus        81 ~~~~F~~DHl~~~~~d~e~~~~~~~~~e~~R~~l~~~l~~Yv~~hy~~g~~~V~~~~~~~~~~l~i~I~~~k~n~~Nfwn  160 (271)
T PF01267_consen   81 SKKSFSVDHLKQKASDVEPYEPPDEELESYRDALDKALEKYVKEHYPSGACGVYPKSEEDKETLVICIVAHKYNPKNFWN  160 (271)
T ss_dssp             TTEEEEEETTTTEEEEEEE-----TSSHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEETTEEEEEEEEEEEEEEGGGTEE
T ss_pred             cCcEEEEeeeccEEccCccccccccchHHHHHHHHHHHHHHHHHhccCceeEEEeccCCCccEEEEEEEecccccccccC
Confidence            999999999998                                                                    


Q ss_pred             ----------------------eeeEEEeeceEEEeecccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 029035          103 ----------------------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLP  160 (200)
Q Consensus       103 ----------------------v~vHYyEdGNVqL~s~k~~~~s~~~~~~~~~a~~ivk~I~~~E~~~q~~L~e~~~~Ls  160 (200)
                                            |+|||||||||||+++|++..++.++++.++|++||++|+++|++||++|+++|++||
T Consensus       161 G~WrS~w~~~~~~~~~l~G~I~V~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~e~~~~ls  240 (271)
T PF01267_consen  161 GRWRSEWTVDFSSSGTLSGKIKVQVHYYEDGNVQLNSSKEVSETVSVSNDEQFASDIVKAIKEAENKYQTSLNESYNNLS  240 (271)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEEE--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeEEEEEecCCCceEEEEEEeeEEEEeecEEEEEEccccceeeccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                                  9999999999999999999999988888889999999999999999999999999999


Q ss_pred             hhhhhhhhccCCCCCCcccCCccccchhhHH
Q 029035          161 DNTFKDLRRKLPVTRTLFPWHNTSQFSLTRE  191 (200)
Q Consensus       161 e~~FK~LRR~LPvTRsKi~W~ki~~yrlg~d  191 (200)
                      +++||+|||+||||||||||+||++||||+|
T Consensus       241 ~~tFK~LRR~LPVTRsKi~W~ki~~yrlg~d  271 (271)
T PF01267_consen  241 EKTFKALRRQLPVTRSKINWNKIGNYRLGKD  271 (271)
T ss_dssp             HTHHHHHS-SS-TTTSS-SHHHHHTTTS---
T ss_pred             HHHHHHhhhhCCCCCCcccccccccEEecCC
Confidence            9999999999999999999999999999997

The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....

>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex

Probab=91.17  E-value=5.3  Score=35.22  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=48.4

Q ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEc-CCCCCeEEEccccccCC-------
Q 029035           12 KKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQM-PAGAGDVLVTSFGELGE-------   83 (200)
Q Consensus        12 k~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~-~g~~~~viis~~n~l~~-------   83 (200)
                      |.+-+-.|+..=||-.+.+-+++|..|.++   +.+.+...+     +|-..|.- +.....+|.|.||+.++       
T Consensus         1 k~d~aLdLlRRlpP~~ie~nl~~l~~L~Pd---l~edLLssV-----D~PLkv~~d~~~~k~yL~CdYNRDgDSYRSPwS   72 (242)
T PF01115_consen    1 KLDAALDLLRRLPPKKIEKNLSNLIDLVPD---LTEDLLSSV-----DQPLKVARDKETGKDYLLCDYNRDGDSYRSPWS   72 (242)
T ss_dssp             HHHHHHHHHTTS-GGGHHHHHHHHHHHSGG---GHHHHHHHS---------EEEEETTTTEEEEESGGGEETTEEE-TTT
T ss_pred             ChhHHHHHHhhCChHHHHHHHHHHHHHHHH---HHHHHHHhC-----CCcceEEEchhhCCeeEeecccCCcccccCCCC
Confidence            456677899999999999999999999873   344444333     33333333 33446799999999643       


Q ss_pred             CeeecCCC-----CeEEEEecccc
Q 029035           84 NEYLDPRT-----AQVAIVDHVKQ  102 (200)
Q Consensus        84 ~~y~Dp~~-----k~~f~~Dhl~~  102 (200)
                      ++|+-|-.     --.+.-++|++
T Consensus        73 NkY~P~~~~~~~~dg~~PS~~LR~   96 (242)
T PF01115_consen   73 NKYYPPLEGDDLEDGPVPSERLRK   96 (242)
T ss_dssp             --EES--S-----S-----HHHHH
T ss_pred             cccCCCccccccCCCCCChHHHHH
Confidence            46665555     45565666665

The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
1izn_A	286	Crystal Structure Of Actin Filament Capping Protein		1e-13
2kxp_A	275	Solution Nmr Structure Of V-1 Bound To Capping Prot		8e-13
4akr_A	281	Crystal Structure Of The Cytoplasmic Actin Capping		9e-13
4akr_A	281	Crystal Structure Of The Cytoplasmic Actin Capping		1e-10

>pdb|1IZN|A Chain A, Crystal Structure Of Actin Filament Capping Protein Capz Length = 286

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 87  LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
           + P TAQVA V    ++  HY+E+GNVQL +  +  DS    S   +A     I+ + E 
Sbjct: 181 ITPPTAQVAAV---LKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAEN 237
Query: 147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREI 192
           EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +E+
Sbjct: 238 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEM 283

>pdb|2KXP|A Chain A, Solution Nmr Structure Of V-1 Bound To Capping Protein (Cp) Length = 275

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 87  LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
           + P TAQVA V    ++  HY+E+GNVQL +  +  DS    S   +A     I+ + E 
Sbjct: 175 ITPPTAQVAAV---LKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAEN 231
Query: 147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTR 190
           EY  ++  +Y  + D TFK LRR+LPVTRT   W+    + + +
Sbjct: 232 EYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 275

>pdb|4AKR|A Chain A, Crystal Structure Of The Cytoplasmic Actin Capping Protein Cap32_34 From Dictyostelium Discoideum Length = 281

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 14  EIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDV 73
           +IA  FLLN+P  E   V  D+R +L    + + +   +F  YN S M+ +Q   G+   
Sbjct: 9   QIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGSA-- 66
Query: 74  LVTSFGELGENEYLDPRTAQVAIVDHVKQ 102
           L+T  GE+  NEYLDP+  QV   DH+KQ
Sbjct: 67  LITKEGEISNNEYLDPKNKQVITYDHIKQ 95

>pdb|4AKR|A Chain A, Crystal Structure Of The Cytoplasmic Actin Capping Protein Cap32_34 From Dictyostelium Discoideum Length = 281

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
           QV  HYFE+GNVQL+   +   ++       +A++    +   E     +L+ +YS + D
Sbjct: 189 QVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNNYSTMGD 248
Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSLTREITK 194
            TFK LRR LP+ RT   W     F +  E+ K
Sbjct: 249 TTFKALRRALPINRTKINWQKVKNFKIANELNK 281

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
3aa0_A	286	F-actin-capping protein subunit alpha-1; actin cap	1e-29
3aa0_A	286	F-actin-capping protein subunit alpha-1; actin cap	2e-27
4akr_A	281	F-actin-capping protein subunit alpha; actin-bindi	1e-28
4akr_A	281	F-actin-capping protein subunit alpha; actin-bindi	7e-24

>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A Length = 286

 Score =  109 bits (274), Expect = 1e-29
 Identities = 32/93 (34%), Positives = 51/93 (54%)

Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
           ++  HY+E+GNVQL +  +  DS    S   +A     I+ + E EY  ++  +Y  + D
Sbjct: 193 KIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSD 252

Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSLTREITK 194
            TFK LRR+LPVTRT   W+    + + +E+  
Sbjct: 253 TTFKALRRQLPVTRTKIDWNKILSYKIGKEMQN 285

>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A Length = 286

 Score =  103 bits (259), Expect = 2e-27
 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 1   MAE-EVELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKS 59
           MA+ E  ++ ++K  IA  F+ ++P GE   V  D+RL+LN++ +  E  + +F  YN  
Sbjct: 1   MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMD 60

Query: 60  HMICLQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQ 102
               +++      VL+T  G+LG   +LDPR       DH+++
Sbjct: 61  QFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRK 103

>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum} Length = 281

 Score =  107 bits (267), Expect = 1e-28
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 1/108 (0%)

Query: 87  LDPRTAQVAIVDHVKQVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHET 146
             P +  V     V QV  HYFE+GNVQL+   +   ++       +A++    +   E 
Sbjct: 175 FKPGSGNVTSNGKV-QVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAEL 233

Query: 147 EYLASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITK 194
               +L+ +YS + D TFK LRR LP+ RT   W     F +  E+ K
Sbjct: 234 NLHTALDNNYSTMGDTTFKALRRALPINRTKINWQKVKNFKIANELNK 281

>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum} Length = 281

 Score = 94.8 bits (235), Expect = 7e-24
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 10  KQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAG 69
           ++  +IA  FLLN+P  E   V  D+R +L    + + +   +F  YN S M+ +Q    
Sbjct: 5   QELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTS-- 62

Query: 70  AGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQ 102
            G  L+T  GE+  NEYLDP+  QV   DH+KQ
Sbjct: 63  KGSALITKEGEISNNEYLDPKNKQVITYDHIKQ 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
4akr_A	281	F-actin-capping protein subunit alpha; actin-bindi	100.0
3aa0_A	286	F-actin-capping protein subunit alpha-1; actin cap	100.0
3aa0_B	244	F-actin-capping protein subunit beta isoforms 1 A;	93.48
3lk4_B	277	F-actin-capping protein subunit beta isoforms 1 an	92.83
4akr_B	290	F-actin-capping protein subunit beta; actin-bindin	91.15

>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}

Probab=100.00  E-value=4.5e-74  Score=504.50  Aligned_cols=183  Identities=36%  Similarity=0.617  Sum_probs=168.5

Q ss_pred             hhHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEcCCCCCeEEEccccccCCCeeecC
Q 029035           10 KQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDP   89 (200)
Q Consensus        10 ~ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~~g~~~~viis~~n~l~~~~y~Dp   89 (200)
                      +||++||++||++||||||++|++|||.|++||.++++++++||++||++||+||++||.+  ||||+||+++++|||||
T Consensus         5 ~ek~~i~~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~~~~a~~~Yn~~q~~~v~~~g~~--viis~~n~l~~~ry~Dp   82 (281)
T 4akr_A            5 QELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGS--ALITKEGEISNNEYLDP   82 (281)
T ss_dssp             HHHHHHHHHHHHTCCTTCHHHHHHHHHTTCSCTTTTTTTHHHHHHHHHHHHTCEEEETTEE--EECCSTTEEETTEEEEG
T ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHccEEEEeCCCc--EEEeeccccCCCeEEcc
Confidence            7899999999999999999999999999999999999999999999999999999999953  99999999999999999


Q ss_pred             CCCeEEEEecccc-------------------------------------------------------------------
Q 029035           90 RTAQVAIVDHVKQ-------------------------------------------------------------------  102 (200)
Q Consensus        90 ~~k~~f~~Dhl~~-------------------------------------------------------------------  102 (200)
                      +++++|.|||+++                                                                   
T Consensus        83 ~~k~sF~~DHl~~~a~d~~~~~~~~~~~~e~~R~al~~~l~~Yv~~hYp~g~~~Vy~~~~~~~~~l~i~I~~~k~np~NF  162 (281)
T 4akr_A           83 KNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYKPNAF  162 (281)
T ss_dssp             GGTEEEEEETTTTEEEEEEECSSCSCGGGHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEEEEEEEGGGT
T ss_pred             CCCeEEEEeccCCEEcCcccccccCccchHHHHHHHHHHHHHHHHhhCCCCcEEEecccCCCCcEEEEEEEeCccCcccc
Confidence            9999999999987                                                                   


Q ss_pred             ---------------------------eeeEEEeeceEEEeecccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 029035          103 ---------------------------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVS  155 (200)
Q Consensus       103 ---------------------------v~vHYyEdGNVqL~s~k~~~~s~~~~~~~~~a~~ivk~I~~~E~~~q~~L~e~  155 (200)
                                                 |+|||||||||||+++|+++.+++++++.++|++||+.|+++|++||++|+++
T Consensus       163 wnGrWrS~w~~~~~~~~~~l~~~G~I~V~vHYyEDGNVqL~s~k~~~~s~~~~~~~~~a~~iv~~I~~~E~~~q~~l~~~  242 (281)
T 4akr_A          163 YSGRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNN  242 (281)
T ss_dssp             EEEEEEEEEEEEECTTSSEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEEEEecCCCCeEEECCEEEEEEEEeecceEEEEeccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       99999999999999999999999998888899999999999999999999999


Q ss_pred             hccCChhhhhhhhccCCCCCCcccCCccccchhhHHHhh
Q 029035          156 YSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITK  194 (200)
Q Consensus       156 ~~~Lse~~FK~LRR~LPvTRsKi~W~ki~~yrlg~d~~~  194 (200)
                      |++||+++||+||||||||||||||+||++||||+|+++
T Consensus       243 ~~~ls~~tfK~LRR~LPvTRtKidW~ki~~yrlg~d~~~  281 (281)
T 4akr_A          243 YSTMGDTTFKALRRALPINRTKINWQKVKNFKIANELNK  281 (281)
T ss_dssp             HHHHHHTTTTTTSCSSCTTSCCCCTTCC-----------
T ss_pred             HHHhCHHHHHHhhccCCCCCCcccccccccchhhhhhcC
Confidence            999999999999999999999999999999999999964

>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A

Probab=100.00  E-value=1.2e-65  Score=451.90  Aligned_cols=194  Identities=33%  Similarity=0.608  Sum_probs=175.6

Q ss_pred             Ccc-cccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEcCCCCCeEEEcccc
Q 029035            1 MAE-EVELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFG   79 (200)
Q Consensus         1 m~~-~~~~s~~ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~~g~~~~viis~~n   79 (200)
                      ||+ +++||+++|++||.+||.+|||||+++|++||+.|++|+.++++.+++||++||++||+|+++||.+++||||+||
T Consensus         1 m~~~~~~ms~~~k~~ia~~ll~~aPPge~~~v~~Dl~~L~~dd~ll~~~l~~a~~~yn~dq~~pl~v~~~~~~~li~~yn   80 (286)
T 3aa0_A            1 MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHG   80 (286)
T ss_dssp             ------CCCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHHHTTCEECCTTSSSCEECCGGG
T ss_pred             CCccccccChHHHHHHHHHHHHhCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcceeEEecCCCCcEEEEecc
Confidence            888 6789999999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             ccCCCeeecCCCCeEEEEecccc---------------------------------------------------------
Q 029035           80 ELGENEYLDPRTAQVAIVDHVKQ---------------------------------------------------------  102 (200)
Q Consensus        80 ~l~~~~y~Dp~~k~~f~~Dhl~~---------------------------------------------------------  102 (200)
                      ++++++|+||+++++|+|||+++                                                         
T Consensus        81 ~~~~~~Y~dp~s~~~f~~Dh~~~~~~d~~~~~ps~~l~~~r~~~~~~l~~Y~~~~Y~~g~~sVY~~d~e~~~~~a~~I~~  160 (286)
T 3aa0_A           81 DLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIES  160 (286)
T ss_dssp             EEETTEEEETTTTEEEEEETTTTEEEEEEECCCCCTTHHHHHHHHHHHHHHHHHHSSSCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccCCCceeCcccCceEEeecccceeccCCCCCCchhhHHHHHHHHHHHHHHHHHHcCCCceEEEecccCCCceEEEEEEE
Confidence            99999999999999999999976                                                         


Q ss_pred             ---------------------------------eeeEEEeeceEEEeecccccccccccCCcccHHHHHHHHHHHHHHHH
Q 029035          103 ---------------------------------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYL  149 (200)
Q Consensus       103 ---------------------------------v~vHYyEdGNVqL~s~k~~~~s~~~~~~~~~a~~ivk~I~~~E~~~q  149 (200)
                                                       |++||||||||||+++|+++.++.++++.+.|++|++.|+++|++||
T Consensus       161 ~k~~~~nfw~G~W~Si~~~~v~~~~~~l~G~i~v~vHY~EdGNV~L~~~k~~~~~~~~~~~~~~a~~i~~~Ie~~E~~~~  240 (286)
T 3aa0_A          161 HQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQ  240 (286)
T ss_dssp             EEEEGGGTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEEEECCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCccccCceeeeEEEEEeccccceEEEEEEEEEEEecCceEEEeeccccccccccCChHHHHHHHHHHHHHHHHHHH
Confidence                                             78999999999999999999999888878899999999999999999


Q ss_pred             HHHHHHhccCChhhhhhhhccCCCCCCcccCCccccchhhHHHhh
Q 029035          150 ASLEVSYSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITK  194 (200)
Q Consensus       150 ~~L~e~~~~Lse~~FK~LRR~LPvTRsKi~W~ki~~yrlg~d~~~  194 (200)
                      .+|++.|.+|++++||+|||+|||||+||+|+||++||||+||++
T Consensus       241 ~~L~e~y~~ls~~~fk~LRR~LPvtr~ki~W~ki~~y~lg~d~~~  285 (286)
T 3aa0_A          241 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQN  285 (286)
T ss_dssp             HHHHHHHHHHHHTHHHHHCCSSCTTSSCCCHHHHTC---------
T ss_pred             HHHHHHHHHhhHHHHHHHhccCCccccccchhhhcceehhhhhcc
Confidence            999999999999999999999999999999999999999999975

>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B

Probab=93.48  E-value=0.92  Score=38.76  Aligned_cols=66  Identities=15%  Similarity=0.154  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEc-CCCCCeEEEccccccCC
Q 029035           10 KQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQM-PAGAGDVLVTSFGELGE   83 (200)
Q Consensus        10 ~ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~-~g~~~~viis~~n~l~~   83 (200)
                      +++.+-+-.|+..=||-++..-+++|..|+++   +.+.+..     ..+|-..|.- +.....+|.|.||+.++
T Consensus         3 ~~~~d~aLdL~RRLpP~~ie~nl~~l~~L~Pd---l~edLLs-----sVDqPLki~~d~~~~k~yL~CdYNRDgD   69 (244)
T 3aa0_B            3 DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPS---LCEDLLS-----SVDQPLKIARDKVVGKDYLLCDYNRDGD   69 (244)
T ss_dssp             HHHHHHHHHHHTTSCGGGHHHHHHHHHHHCGG---GHHHHHH-----HSCCCCEEEEETTTTEEEEECGGGEETT
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHhChH---HHHHHHh-----ccCCcceEeeccccCCeeeeecccCCCc
Confidence            67789999999999999999999999999974   3333332     2344443333 33347799999999643

>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B

Probab=92.83  E-value=0.67  Score=40.29  Aligned_cols=159  Identities=16%  Similarity=0.194  Sum_probs=95.9

Q ss_pred             hHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEc-CCCCCeEEEccccccCC------
Q 029035           11 QKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQM-PAGAGDVLVTSFGELGE------   83 (200)
Q Consensus        11 ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~-~g~~~~viis~~n~l~~------   83 (200)
                      ++.+-+=.|+..=||-.+.+=+++|..|+++   +.+.+..+     .+|-.-|.- +.....+|.|.||+.++      
T Consensus         4 ~~~daaLdLlRRLpP~~ie~nl~~l~~L~P~---L~edLLss-----VDqPLki~~d~~~~k~yL~CDYNRDgDSYRSPw   75 (277)
T 3lk4_B            4 QQLDCALDLMRRLPPQQIEKNLSDLIDLVPS---LCEDLLSS-----VDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPW   75 (277)
T ss_dssp             CHHHHHHHHHTTSCGGGHHHHHHHHHHHCGG---GHHHHHHH-----SCCCCEEEEETTTTEEEEECGGGEETTEEECTT
T ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHHHhhChH---hHHHHHHh-----CCcCceEeEccccCCeeEeecccCCCccccCCC
Confidence            4688889999999999999999999999974   33344322     344443333 33346799999999643      


Q ss_pred             -CeeecCCCCeEEEEecccc------------------------------------------------------------
Q 029035           84 -NEYLDPRTAQVAIVDHVKQ------------------------------------------------------------  102 (200)
Q Consensus        84 -~~y~Dp~~k~~f~~Dhl~~------------------------------------------------------------  102 (200)
                       ++|+-|-..-.|--++|++                                                            
T Consensus        76 SNkY~Ppl~dg~~PS~~LRkLEi~aN~aFd~Yr~lYYeGGvSSVYlWdld~gFagvvLiKK~~~~~~~~~G~WDSIHV~E  155 (277)
T 3lk4_B           76 SNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVE  155 (277)
T ss_dssp             TCCEESCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETTEEEEEEEEEEECCCGGGEEEEEEEEEEEE
T ss_pred             cCCcCCCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEecCCCeEEEEEEEecCCCccccccceeeeEEEE
Confidence             4555555544444444444                                                            


Q ss_pred             ee-------eEEEeeceEE--Eeeccc--------------ccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHhccC
Q 029035          103 VG-------AHYFEEGNVQ--LDAKHE--------------CGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNL  159 (200)
Q Consensus       103 v~-------vHYyEdGNVq--L~s~k~--------------~~~s~~~~~~~~~a~~ivk~I~~~E~~~q~~L~e~~~~L  159 (200)
                      |.       +||-=-.-|.  |.+.++              .+.+..+.+...-...|=+.|++.|+.+-..|++-|=.=
T Consensus       156 v~~~~~~~~~~YklTSTVmL~l~~~~~~~g~~~LsGsltRq~e~~~~v~~~~~Hi~NiG~mVEdmE~~mRn~L~~VYFgK  235 (277)
T 3lk4_B          156 VQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFGK  235 (277)
T ss_dssp             EEC----CEEEEEEEEEEEEEEEECCSSSSEEEEEEEEEEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             EeeccCCceeEEEEeEEEEEEEEcCCCCcceEeeceeeeeeccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            11       3554333333  222221              112222333334566778999999999999999998765


Q ss_pred             ChhhhhhhhccCCCCCCc
Q 029035          160 PDNTFKDLRRKLPVTRTL  177 (200)
Q Consensus       160 se~~FK~LRR~LPvTRsK  177 (200)
                      .......||..-|+.-.+
T Consensus       236 tkdIv~~lRs~~~~~~~~  253 (277)
T 3lk4_B          236 TKDIVNGLRSIDAIPDNQ  253 (277)
T ss_dssp             HHHHHHTTC---------
T ss_pred             HHHHHHHhhcCCCchhhH
Confidence            566778999888887543

>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}

Probab=91.15  E-value=1.9  Score=37.61  Aligned_cols=159  Identities=15%  Similarity=0.212  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEc-CCCCCeEEEccccccCC-----
Q 029035           10 KQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQM-PAGAGDVLVTSFGELGE-----   83 (200)
Q Consensus        10 ~ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~-~g~~~~viis~~n~l~~-----   83 (200)
                      +++..-+-.|+..=||-.+..-+++|..|.++   +.+.+...     .+|-..|.- +.....+|.|.||+.++     
T Consensus        21 ~~~~daaLdLlRRLpP~~ie~nL~~Li~L~Pd---l~edLLss-----VDqPLki~~d~~~~k~yL~CDYNRDGDSYRSP   92 (290)
T 4akr_B           21 EKQLSCCLDLMRRLPPSQIEDNLAGLLDLVPD---LTEDLLSS-----IDQPLKVAYDAVSKKDYLLCDYNRDADSYRSP   92 (290)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHHHCGG---GHHHHHHH-----CCCCCEEEEETTTTEEEEECGGGEETTEEECT
T ss_pred             hhHHHHHHHHHhhCCHHHHHHHHHHHHhhChH---hHHHHHHh-----CCCcceEeEccccCCeEEeecccCCCccccCC
Confidence            57788999999999999999999999999974   33333322     344443333 33346799999999643     


Q ss_pred             --CeeecCCCCeEEEEecccc-----------------------------------------------------------
Q 029035           84 --NEYLDPRTAQVAIVDHVKQ-----------------------------------------------------------  102 (200)
Q Consensus        84 --~~y~Dp~~k~~f~~Dhl~~-----------------------------------------------------------  102 (200)
                        ++|+-|-..-.|--+.|++                                                           
T Consensus        93 wSNkY~Ppl~dg~~PS~~LRkLEi~aN~aFd~Yr~lYYeGGvSSVYlWdld~gFagvvLiKK~~~~~~~g~~~~G~WDSI  172 (290)
T 4akr_B           93 WSNKYDPPLSGACYPSSKLRDIEVQANEIFEIYLNLYFEGGVSSVYCWDLDDNFAAVVLMKKTQDQSKKGQPMRGTWDSI  172 (290)
T ss_dssp             TTCCEESCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETTEEEEEEEEEEEEC------CEEEEEEEE
T ss_pred             CCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEEecCCCceEEEEEEeccCccccccCCCCceeee
Confidence              4555554443443333333                                                           


Q ss_pred             ----e------eeEEEeeceEE--Eeeccc--------------ccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 029035          103 ----V------GAHYFEEGNVQ--LDAKHE--------------CGDSTLFQSPDDSAISISNILRHHETEYLASLEVSY  156 (200)
Q Consensus       103 ----v------~vHYyEdGNVq--L~s~k~--------------~~~s~~~~~~~~~a~~ivk~I~~~E~~~q~~L~e~~  156 (200)
                          |      ++||==-.-|.  |.+.++              .+.+..+++...-...|=+.|++.|+.+-..|++-|
T Consensus       173 HV~Ev~~~~~~~a~YklTSTVmL~L~t~~~~~g~~~LsGslTRq~e~~~~v~d~~~HI~NiG~mVEdmE~kmRn~L~eVY  252 (290)
T 4akr_B          173 HVVEVKLGKKDKAVYKLTSTVMLSIETDNDNTGKVNLAGSLTRQDEKEYTFNEVDTHCVNIGKMVEDMESKLRQTLETIY  252 (290)
T ss_dssp             EEEEEEEETTTEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecCCCceEEEEeEEEEEEEecCCCCCceEeeeeeeeeecccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                1      24551111111  211121              112223333344566788999999999999999998


Q ss_pred             ccCChhhhhhhhccCCCCCC
Q 029035          157 SNLPDNTFKDLRRKLPVTRT  176 (200)
Q Consensus       157 ~~Lse~~FK~LRR~LPvTRs  176 (200)
                      =.=.....-.||-.-|+.-.
T Consensus       253 FgKtkdIv~~lRs~~~~~~~  272 (290)
T 4akr_B          253 FGKTKEVVNTLRNATGNSEL  272 (290)
T ss_dssp             HTHHHHHHHHHSCTTCCC--
T ss_pred             hHHHHHHHHhhccCCcchhh
Confidence            75555566689888777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1izna_	275	e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallu	5e-31
d1izna_	275	e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallu	3e-30

>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]} Length = 275

class: Multi-domain proteins (alpha and beta)
fold: Subunits of heterodimeric actin filament capping protein Capz
superfamily: Subunits of heterodimeric actin filament capping protein Capz
family: Capz alpha-1 subunit
domain: Capz alpha-1 subunit
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  112 bits (281), Expect = 5e-31
 Identities = 31/87 (35%), Positives = 48/87 (55%)

Query: 102 QVGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSNLPD 161
           ++  HY+E+GNVQL +  +  DS    S   +A     I+ + E EY  ++  +Y  + D
Sbjct: 187 KIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSD 246

Query: 162 NTFKDLRRKLPVTRTLFPWHNTSQFSL 188
            TFK LRR+LPVTRT   W+    + +
Sbjct: 247 TTFKALRRQLPVTRTKIDWNKILSYKI 273

>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]} Length = 275

class: Multi-domain proteins (alpha and beta)
fold: Subunits of heterodimeric actin filament capping protein Capz
superfamily: Subunits of heterodimeric actin filament capping protein Capz
family: Capz alpha-1 subunit
domain: Capz alpha-1 subunit
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  109 bits (275), Expect = 3e-30
 Identities = 29/97 (29%), Positives = 52/97 (53%)

Query: 6   ELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQ 65
            ++ ++K  IA  F+ ++P GE   V  D+RL+LN++ +  E  + +F  YN      ++
Sbjct: 1   RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVK 60

Query: 66  MPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQ 102
           +      VL+T  G+LG   +LDPR       DH+++
Sbjct: 61  IEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRK 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1izna_	275	Capz alpha-1 subunit {Chicken (Gallus gallus) [Tax	100.0
d1iznb_	270	Capz beta-1 subunit {Chicken (Gallus gallus) [TaxI	94.44

>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}

class: Multi-domain proteins (alpha and beta)
fold: Subunits of heterodimeric actin filament capping protein Capz
superfamily: Subunits of heterodimeric actin filament capping protein Capz
family: Capz alpha-1 subunit
domain: Capz alpha-1 subunit
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.8e-75  Score=509.99  Aligned_cols=185  Identities=32%  Similarity=0.607  Sum_probs=181.8

Q ss_pred             cCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEcCCCCCeEEEccccccCCCe
Q 029035            6 ELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENE   85 (200)
Q Consensus         6 ~~s~~ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~~g~~~~viis~~n~l~~~~   85 (200)
                      .||++||++||++||++||||||++|++|||.|++|++++++++++||++||++||+||++||.+++||||+||+++++|
T Consensus         1 ~~s~~ek~~i~~~fi~~aPPGE~~~V~~Dl~~l~~d~~~~~~~~~~a~~~yN~~q~~~v~l~g~~~~viis~~n~l~~~r   80 (275)
T d1izna_           1 RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGR   80 (275)
T ss_dssp             CCCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTEEECCTTSSCCEEECSTTBCSSSE
T ss_pred             CCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCchHHHhhHHHHHHHHHHHheEEEEcCCCCccEEEEeccccCCCE
Confidence            48999999999999999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             eecCCCCeEEEEecccc---------------------------------------------------------------
Q 029035           86 YLDPRTAQVAIVDHVKQ---------------------------------------------------------------  102 (200)
Q Consensus        86 y~Dp~~k~~f~~Dhl~~---------------------------------------------------------------  102 (200)
                      ||||+++++|+|||+++                                                               
T Consensus        81 y~Dp~~k~sF~~DHl~~~~sd~e~~~~~~~~e~~r~al~~~L~~Yv~~hYp~g~~~vy~~~~~~~~~l~i~I~~~~~~p~  160 (275)
T d1izna_          81 FLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPK  160 (275)
T ss_dssp             EECTTTCEEEECCSSSSCCCCCEECCCCCSSHHHHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred             EEccCcceEEEEEcccCeEccCccCCCcchhHHHHHHHHHHHHHHHHHhCCCCceEEEccCCCCCceEEEEEEeCcCCcc
Confidence            99999999999999998                                                               


Q ss_pred             ---------------------------eeeEEEeeceEEEeecccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 029035          103 ---------------------------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVS  155 (200)
Q Consensus       103 ---------------------------v~vHYyEdGNVqL~s~k~~~~s~~~~~~~~~a~~ivk~I~~~E~~~q~~L~e~  155 (200)
                                                 |+|||||||||||+++|+++.++.++++.++|++||+.|+++|++||.+|+++
T Consensus       161 NFwnG~WrS~w~~~~~~~~~~l~G~i~v~vHYyEdGNVqL~s~k~~~~s~~~~~~~~~A~~iv~~I~~~E~~~q~~l~e~  240 (275)
T d1izna_         161 NFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISEN  240 (275)
T ss_dssp             GTEEEEEEEEEEEECCSSEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEECCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCceeEEEEEEEccCCCcEEEEEEEEEEEEEecCeEEEEEccccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       99999999999999999999999999988899999999999999999999999


Q ss_pred             hccCChhhhhhhhccCCCCCCcccCCccccchhhH
Q 029035          156 YSNLPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTR  190 (200)
Q Consensus       156 ~~~Lse~~FK~LRR~LPvTRsKi~W~ki~~yrlg~  190 (200)
                      |++||+++||+||||||||||||||+||++||||+
T Consensus       241 f~~ls~~~FK~LRR~LPVTR~KidW~ki~~yrlgk  275 (275)
T d1izna_         241 YQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK  275 (275)
T ss_dssp             HHHHHHTHHHHHSCSSCTTSSCCCHHHHTTCCSCC
T ss_pred             HHHhCHHHHHHHHhhCCcCCcccchhhhcccccCC
Confidence            99999999999999999999999999999999996

>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}

class: Multi-domain proteins (alpha and beta)
fold: Subunits of heterodimeric actin filament capping protein Capz
superfamily: Subunits of heterodimeric actin filament capping protein Capz
family: Capz beta-1 subunit
domain: Capz beta-1 subunit
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.44  E-value=0.18  Score=41.73  Aligned_cols=175  Identities=16%  Similarity=0.194  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCChhhHHHHhhhHHHHhhhcceeeEcC-CCCCeEEEccccccCC-----
Q 029035           10 KQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMP-AGAGDVLVTSFGELGE-----   83 (200)
Q Consensus        10 ~ek~~ii~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~i~~a~~~yn~~~~~~v~~~-g~~~~viis~~n~l~~-----   83 (200)
                      ++|.+-+-.|+..=||-.+.+-+++|..|.++   +.+.+..     ..+|-..|.-. .....+|.|.||+.++     
T Consensus         2 d~~~daaLdLlRRlpP~~ie~~l~~l~~L~pd---l~edLLs-----sVD~PLki~~d~~~~k~yL~CdyNRDgDSYRSP   73 (270)
T d1iznb_           2 DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPS---LCEDLLS-----SVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSP   73 (270)
T ss_dssp             HHHHHHHHHHHTTSCGGGHHHHHHHHHHHCGG---GHHHHHH-----HSCCCCEEEEETTTTEEEEECGGGEETTEEECT
T ss_pred             chHHHHHHHHHhcCChHHHHHHHHHHHhhCHH---HHHHHHH-----hCCCcceEeEchhhCCeeEeecccCCCccccCC
Confidence            57888999999999999999999999999974   3333332     23444444433 3346799999999643     


Q ss_pred             --CeeecCCCCeEEEEecccc-----------------------------------------------------------
Q 029035           84 --NEYLDPRTAQVAIVDHVKQ-----------------------------------------------------------  102 (200)
Q Consensus        84 --~~y~Dp~~k~~f~~Dhl~~-----------------------------------------------------------  102 (200)
                        ++|+.|...-.|--++|++                                                           
T Consensus        74 wSNkY~P~~edg~~PS~~LR~LEi~aN~~Fd~Yr~lYYegGvSSVYlWdld~gFag~vliKK~~~~~~~~~G~WDsIHV~  153 (270)
T d1iznb_          74 WSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVV  153 (270)
T ss_dssp             TTCCEESCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEECSSEEEEEEEEEEECCTTSSEEEEEEEEEEE
T ss_pred             CCCCcCCCccCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCCCceEEEEEEecCCCCCCceeeeeeeEEE
Confidence              5677665544444444443                                                           


Q ss_pred             --------eeeEEEeeceEEEe--eccc--------------ccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029035          103 --------VGAHYFEEGNVQLD--AKHE--------------CGDSTLFQSPDDSAISISNILRHHETEYLASLEVSYSN  158 (200)
Q Consensus       103 --------v~vHYyEdGNVqL~--s~k~--------------~~~s~~~~~~~~~a~~ivk~I~~~E~~~q~~L~e~~~~  158 (200)
                              -.+||.=.--|-|.  +.+.              .+.+..+++...--..|=+.|+..|+.+-..|.+-|=.
T Consensus       154 ev~~~~s~~~~~YkltSTv~L~l~~~~~~~g~~~LsGsltrq~e~~~~v~~~~~Hi~NiG~mIEdmE~~mR~~L~~VYf~  233 (270)
T d1iznb_         154 EVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFG  233 (270)
T ss_dssp             EEEECTTTSEEEEEEEEEEEEEEEEEEGGGEEEEEEEEEEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeecccCCeEEEEEeeEEEEEEecCCCccceEeecceeeeeecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    13566533333222  2111              22222333333446677799999999999999998864


Q ss_pred             CChhhhhhhhccCCCCCCcccCCccccchhhHHHhhhhcC
Q 029035          159 LPDNTFKDLRRKLPVTRTLFPWHNTSQFSLTREITKELGI  198 (200)
Q Consensus       159 Lse~~FK~LRR~LPvTRsKi~W~ki~~yrlg~d~~~~~~~  198 (200)
                      =-..-...||-.-|+...+ .|.     .+-+++.++|+.
T Consensus       234 KtkdIv~~lRs~~~~~~~~-~~~-----~~~~~l~~~l~~  267 (270)
T d1iznb_         234 KTKDIVNGLRSIDAIPDNQ-KYK-----QLQRELSQVLTQ  267 (270)
T ss_dssp             HHHHHHHHHCCSSCCCCCH-HHH-----HHHHHHHHHHHT
T ss_pred             HHHHHHHhcccCCCCCccc-HHH-----HHHHHHHHHHHh
Confidence            4444678998777765432 222     455566665543